Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69883.t1 | XP_024627803.1 | 98.3 | 541 | 8 | 1 | 1 | 540 | 1 | 541 | 2.2e-308 | 1067.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69883.t1 | Q8S528 | 78.4 | 538 | 111 | 2 | 3 | 540 | 2 | 534 | 1.5e-249 | 863.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69883.t1 | A0A072U2G7 | 98.3 | 541 | 8 | 1 | 1 | 540 | 1 | 541 | 1.6e-308 | 1067.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052563 | MS.gene69883 | 0.810385 | 1.18E-50 | -1.69E-46 |
| MS.gene053083 | MS.gene69883 | 0.844142 | 9.08E-59 | -1.69E-46 |
| MS.gene058996 | MS.gene69883 | 0.80237 | 5.79E-49 | -1.69E-46 |
| MS.gene059837 | MS.gene69883 | -0.830569 | 2.73E-55 | -1.69E-46 |
| MS.gene060599 | MS.gene69883 | 0.804475 | 2.12E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69883.t1 | MTR_8g064170 | 98.336 | 541 | 8 | 1 | 1 | 540 | 1 | 541 | 0.0 | 1097 |
| MS.gene69883.t1 | MTR_8g064170 | 92.421 | 541 | 8 | 2 | 1 | 540 | 1 | 509 | 0.0 | 1016 |
| MS.gene69883.t1 | MTR_3g078170 | 75.322 | 543 | 121 | 2 | 10 | 540 | 1 | 542 | 0.0 | 874 |
| MS.gene69883.t1 | MTR_4g107040 | 80.318 | 503 | 98 | 1 | 38 | 540 | 43 | 544 | 0.0 | 870 |
| MS.gene69883.t1 | MTR_3g078170 | 73.407 | 455 | 108 | 2 | 10 | 452 | 1 | 454 | 0.0 | 716 |
| MS.gene69883.t1 | MTR_3g078170 | 73.148 | 432 | 103 | 2 | 10 | 429 | 1 | 431 | 0.0 | 679 |
| MS.gene69883.t1 | MTR_3g078170 | 73.148 | 432 | 103 | 2 | 10 | 429 | 1 | 431 | 0.0 | 679 |
| MS.gene69883.t1 | MTR_6g086300 | 58.058 | 484 | 203 | 0 | 57 | 540 | 19 | 502 | 0.0 | 580 |
| MS.gene69883.t1 | MTR_6g086300 | 58.058 | 484 | 203 | 0 | 57 | 540 | 19 | 502 | 0.0 | 580 |
| MS.gene69883.t1 | MTR_8g083530 | 54.545 | 484 | 220 | 0 | 57 | 540 | 20 | 503 | 0.0 | 564 |
| MS.gene69883.t1 | MTR_6g086340 | 55.785 | 484 | 214 | 0 | 57 | 540 | 17 | 500 | 0.0 | 552 |
| MS.gene69883.t1 | MTR_8g083520 | 51.324 | 491 | 206 | 1 | 50 | 540 | 4 | 461 | 0.0 | 521 |
| MS.gene69883.t1 | MTR_8g083520 | 50.242 | 414 | 173 | 1 | 127 | 540 | 1 | 381 | 3.48e-147 | 428 |
| MS.gene69883.t1 | MTR_8g083530 | 53.636 | 330 | 153 | 0 | 57 | 386 | 20 | 349 | 9.30e-125 | 370 |
| MS.gene69883.t1 | MTR_3g078550 | 38.945 | 493 | 288 | 6 | 57 | 539 | 5 | 494 | 6.78e-115 | 350 |
| MS.gene69883.t1 | MTR_4g106510 | 40.404 | 495 | 282 | 6 | 55 | 539 | 3 | 494 | 6.60e-113 | 345 |
| MS.gene69883.t1 | MTR_3g078550 | 40.397 | 453 | 257 | 6 | 97 | 539 | 15 | 464 | 3.86e-109 | 334 |
| MS.gene69883.t1 | MTR_3g078490 | 38.153 | 498 | 291 | 6 | 54 | 539 | 32 | 524 | 6.88e-109 | 335 |
| MS.gene69883.t1 | MTR_2g067660 | 38.755 | 498 | 297 | 5 | 37 | 530 | 21 | 514 | 2.14e-104 | 323 |
| MS.gene69883.t1 | MTR_1690s0010 | 44.575 | 341 | 184 | 4 | 61 | 399 | 10 | 347 | 4.15e-83 | 263 |
| MS.gene69883.t1 | MTR_3g078490 | 36.443 | 343 | 207 | 5 | 54 | 388 | 2 | 341 | 3.13e-62 | 209 |
| MS.gene69883.t1 | MTR_1g014320 | 31.557 | 488 | 306 | 10 | 65 | 539 | 21 | 493 | 6.54e-61 | 209 |
| MS.gene69883.t1 | MTR_2g034160 | 30.078 | 512 | 319 | 11 | 50 | 531 | 26 | 528 | 3.83e-60 | 209 |
| MS.gene69883.t1 | MTR_2g042330 | 30.867 | 473 | 308 | 11 | 66 | 526 | 23 | 488 | 6.75e-59 | 204 |
| MS.gene69883.t1 | MTR_4g131180 | 30.943 | 488 | 309 | 10 | 65 | 539 | 21 | 493 | 1.64e-58 | 202 |
| MS.gene69883.t1 | MTR_4g131180 | 31.350 | 437 | 281 | 8 | 65 | 493 | 21 | 446 | 1.27e-54 | 191 |
| MS.gene69883.t1 | MTR_2g009750 | 31.276 | 486 | 312 | 11 | 63 | 536 | 18 | 493 | 2.60e-54 | 191 |
| MS.gene69883.t1 | MTR_2g009750 | 31.134 | 485 | 313 | 11 | 63 | 536 | 18 | 492 | 1.86e-53 | 189 |
| MS.gene69883.t1 | MTR_2g009750 | 31.134 | 485 | 313 | 11 | 63 | 536 | 17 | 491 | 2.13e-53 | 189 |
| MS.gene69883.t1 | MTR_4g093170 | 31.200 | 500 | 307 | 13 | 58 | 536 | 37 | 520 | 7.26e-53 | 188 |
| MS.gene69883.t1 | MTR_1399s0020 | 28.650 | 363 | 207 | 5 | 168 | 528 | 23 | 335 | 1.32e-39 | 147 |
| MS.gene69883.t1 | MTR_8g076480 | 29.047 | 451 | 284 | 14 | 98 | 531 | 8 | 439 | 3.22e-36 | 141 |
| MS.gene69883.t1 | MTR_1222s0010 | 32.410 | 361 | 215 | 11 | 129 | 476 | 33 | 377 | 2.25e-34 | 138 |
| MS.gene69883.t1 | MTR_1g029840 | 28.868 | 433 | 290 | 11 | 107 | 531 | 24 | 446 | 1.27e-33 | 134 |
| MS.gene69883.t1 | MTR_1g029840 | 28.079 | 406 | 278 | 9 | 133 | 531 | 48 | 446 | 1.85e-31 | 127 |
| MS.gene69883.t1 | MTR_8g094600 | 27.235 | 481 | 326 | 14 | 61 | 531 | 33 | 499 | 2.25e-30 | 125 |
| MS.gene69883.t1 | MTR_2g097950 | 29.103 | 457 | 287 | 16 | 93 | 530 | 14 | 452 | 7.34e-30 | 123 |
| MS.gene69883.t1 | MTR_3g088150 | 27.169 | 438 | 299 | 13 | 103 | 531 | 22 | 448 | 2.12e-29 | 121 |
| MS.gene69883.t1 | MTR_1314s0010 | 29.480 | 346 | 222 | 7 | 197 | 530 | 1 | 336 | 3.76e-28 | 115 |
| MS.gene69883.t1 | MTR_2g097950 | 26.304 | 460 | 279 | 14 | 85 | 530 | 4 | 417 | 1.68e-24 | 107 |
| MS.gene69883.t1 | MTR_4g065040 | 28.401 | 419 | 262 | 15 | 133 | 531 | 38 | 438 | 1.67e-20 | 95.1 |
| MS.gene69883.t1 | MTR_0002s0820 | 45.833 | 120 | 48 | 2 | 240 | 342 | 29 | 148 | 6.72e-20 | 87.4 |
| MS.gene69883.t1 | MTR_4g107940 | 25.061 | 411 | 271 | 15 | 63 | 450 | 54 | 450 | 2.16e-11 | 66.6 |
| MS.gene69883.t1 | MTR_4g107940 | 25.061 | 411 | 271 | 15 | 63 | 450 | 54 | 450 | 2.45e-11 | 66.6 |
| MS.gene69883.t1 | MTR_8g064020 | 89.286 | 28 | 3 | 0 | 513 | 540 | 53 | 80 | 3.82e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69883.t1 | AT3G48000 | 77.009 | 535 | 122 | 1 | 6 | 540 | 5 | 538 | 0.0 | 880 |
| MS.gene69883.t1 | AT1G23800 | 81.275 | 502 | 94 | 0 | 39 | 540 | 33 | 534 | 0.0 | 873 |
| MS.gene69883.t1 | AT1G23800 | 82.081 | 346 | 62 | 0 | 39 | 384 | 33 | 378 | 0.0 | 614 |
| MS.gene69883.t1 | AT3G24503 | 55.556 | 486 | 215 | 1 | 56 | 540 | 16 | 501 | 0.0 | 560 |
| MS.gene69883.t1 | AT3G48170 | 41.935 | 496 | 275 | 6 | 54 | 539 | 2 | 494 | 5.37e-130 | 389 |
| MS.gene69883.t1 | AT1G74920 | 41.309 | 489 | 274 | 6 | 61 | 539 | 9 | 494 | 7.44e-124 | 373 |
| MS.gene69883.t1 | AT1G74920 | 41.513 | 489 | 268 | 7 | 61 | 539 | 9 | 489 | 3.54e-122 | 368 |
| MS.gene69883.t1 | AT1G79440 | 40.381 | 473 | 277 | 4 | 59 | 530 | 52 | 520 | 4.89e-105 | 325 |
| MS.gene69883.t1 | AT2G24270 | 32.114 | 492 | 298 | 11 | 65 | 539 | 21 | 493 | 2.46e-59 | 204 |
| MS.gene69883.t1 | AT2G24270 | 32.114 | 492 | 298 | 11 | 65 | 539 | 21 | 493 | 2.46e-59 | 204 |
| MS.gene69883.t1 | AT2G24270 | 32.114 | 492 | 298 | 11 | 65 | 539 | 21 | 493 | 3.45e-59 | 204 |
| MS.gene69883.t1 | AT1G54100 | 31.263 | 467 | 299 | 12 | 72 | 526 | 31 | 487 | 6.78e-59 | 204 |
| MS.gene69883.t1 | AT1G54100 | 31.263 | 467 | 299 | 12 | 72 | 526 | 31 | 487 | 6.78e-59 | 204 |
| MS.gene69883.t1 | AT2G24270 | 32.114 | 492 | 298 | 11 | 65 | 539 | 61 | 533 | 8.80e-59 | 204 |
| MS.gene69883.t1 | AT3G66658 | 28.487 | 509 | 331 | 10 | 50 | 531 | 26 | 528 | 6.46e-58 | 202 |
| MS.gene69883.t1 | AT3G66658 | 28.487 | 509 | 331 | 10 | 50 | 531 | 26 | 528 | 1.74e-57 | 202 |
| MS.gene69883.t1 | AT2G14170 | 33.030 | 439 | 277 | 10 | 63 | 493 | 8 | 437 | 2.87e-57 | 199 |
| MS.gene69883.t1 | AT2G14170 | 33.030 | 439 | 277 | 10 | 63 | 493 | 117 | 546 | 1.44e-56 | 199 |
| MS.gene69883.t1 | AT2G14170 | 31.417 | 487 | 310 | 12 | 63 | 536 | 117 | 592 | 1.82e-56 | 199 |
| MS.gene69883.t1 | AT1G44170 | 29.054 | 444 | 297 | 12 | 96 | 531 | 9 | 442 | 3.92e-39 | 149 |
| MS.gene69883.t1 | AT1G44170 | 29.054 | 444 | 297 | 12 | 96 | 531 | 9 | 442 | 3.92e-39 | 149 |
| MS.gene69883.t1 | AT1G44170 | 30.259 | 347 | 232 | 8 | 188 | 531 | 40 | 379 | 2.50e-34 | 134 |
| MS.gene69883.t1 | AT4G36250 | 27.851 | 456 | 296 | 16 | 93 | 531 | 2 | 441 | 2.13e-32 | 130 |
| MS.gene69883.t1 | AT4G34240 | 28.736 | 348 | 236 | 8 | 188 | 531 | 24 | 363 | 3.26e-28 | 117 |
| MS.gene69883.t1 | AT4G34240 | 28.736 | 348 | 236 | 8 | 188 | 531 | 166 | 505 | 2.33e-27 | 116 |
| MS.gene69883.t1 | AT4G34240 | 28.736 | 348 | 236 | 8 | 188 | 531 | 151 | 490 | 2.79e-27 | 115 |
| MS.gene69883.t1 | AT4G34240 | 38.065 | 155 | 91 | 4 | 188 | 341 | 166 | 316 | 4.72e-15 | 77.4 |
| MS.gene69883.t1 | AT5G62530 | 24.096 | 415 | 277 | 15 | 60 | 450 | 53 | 453 | 9.37e-11 | 64.7 |
Find 0 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAAATTAAAACAAGAT+TGG | - | 38057:34701-34720 | None:intergenic | 10.0% |
| !! | ATGATAAATTGAATATTGAA+AGG | + | 38057:33631-33650 | MS.gene69883:intron | 15.0% |
| !!! | ATTTCAATTGATGATTAAAA+GGG | + | 38057:33546-33565 | MS.gene69883:intron | 15.0% |
| !!! | CTTTTTATACAATTTTGATT+AGG | + | 38057:33839-33858 | MS.gene69883:intron | 15.0% |
| !!! | TTTTAAGAAAATGATTTTCT+GGG | + | 38057:32986-33005 | MS.gene69883:intron | 15.0% |
| !!! | TTTTTAAGAAAATGATTTTC+TGG | + | 38057:32985-33004 | MS.gene69883:intron | 15.0% |
| !! | ATATTGAAGTATATTAGATC+TGG | + | 38057:35815-35834 | MS.gene69883:CDS | 20.0% |
| !! | CAGATACAATTAAAAACATT+AGG | - | 38057:36000-36019 | None:intergenic | 20.0% |
| !! | GAAATGCATGTTTAAATTAA+CGG | + | 38057:33352-33371 | MS.gene69883:intron | 20.0% |
| !! | TAATTTAAACATGCATTTCA+AGG | - | 38057:33351-33370 | None:intergenic | 20.0% |
| !! | TTTAATCATCAATTGAAATC+AGG | - | 38057:33545-33564 | None:intergenic | 20.0% |
| !!! | AGCAAAGATGATATATTTTA+TGG | - | 38057:34765-34784 | None:intergenic | 20.0% |
| !!! | ATTTTAATGTTGATTGATTC+AGG | + | 38057:36368-36387 | MS.gene69883:intron | 20.0% |
| !!! | CAATATAAAAGCATTGTTTT+TGG | + | 38057:34724-34743 | MS.gene69883:intron | 20.0% |
| !!! | GATAAGATAAGATAAGATTT+TGG | + | 38057:33071-33090 | MS.gene69883:intron | 20.0% |
| !!! | GATTTCAATTGATGATTAAA+AGG | + | 38057:33545-33564 | MS.gene69883:intron | 20.0% |
| !!! | TAATTTGTAATCTTTCTTGT+AGG | + | 38057:34784-34803 | MS.gene69883:intron | 20.0% |
| !!! | TCACTAGAAAATTTTATAAG+AGG | + | 38057:36271-36290 | MS.gene69883:intron | 20.0% |
| !!! | TCAGTTTATGATTTTCATTA+GGG | + | 38057:33574-33593 | MS.gene69883:intron | 20.0% |
| !!! | TTCAGTTTATGATTTTCATT+AGG | + | 38057:33573-33592 | MS.gene69883:intron | 20.0% |
| !!! | TTTAAGAAAATGATTTTCTG+GGG | + | 38057:32987-33006 | MS.gene69883:intron | 20.0% |
| !!! | TTTCAATTGATGATTAAAAG+GGG | + | 38057:33547-33566 | MS.gene69883:intron | 20.0% |
| !!! | TTTCTGTTTATGTGTTTTAT+AGG | + | 38057:34190-34209 | MS.gene69883:intron | 20.0% |
| !!! | TTTTAATGTTGATTGATTCA+GGG | + | 38057:36369-36388 | MS.gene69883:intron | 20.0% |
| !!! | TTTTGAATTTGATTGATGAT+AGG | + | 38057:33013-33032 | MS.gene69883:intron | 20.0% |
| !!! | TTTTTCTTTCATTAATTGCA+TGG | + | 38057:33137-33156 | MS.gene69883:intron | 20.0% |
| ! | AAAAAAAATGTACTTTCAGG+TGG | + | 38057:33654-33673 | MS.gene69883:intron | 25.0% |
| ! | AAGAAAAGAGGATTAACTAA+AGG | + | 38057:33863-33882 | MS.gene69883:intron | 25.0% |
| ! | AGGAAAAAAAATGTACTTTC+AGG | + | 38057:33651-33670 | MS.gene69883:intron | 25.0% |
| ! | ATATAGACTACATTTGATGA+AGG | - | 38057:36175-36194 | None:intergenic | 25.0% |
| ! | ATTGCAAAAGAAGAGATATT+TGG | + | 38057:36046-36065 | MS.gene69883:CDS | 25.0% |
| ! | CATAAACAGAAAAACAAAAG+TGG | - | 38057:34182-34201 | None:intergenic | 25.0% |
| ! | GATTAACTAAAGGAAAAGAA+GGG | + | 38057:33873-33892 | MS.gene69883:intron | 25.0% |
| ! | GGCTATAGTAATATGAAAAT+TGG | + | 38057:33275-33294 | MS.gene69883:intron | 25.0% |
| ! | GTTTGTCAAGTCATTATATT+TGG | + | 38057:34128-34147 | MS.gene69883:intron | 25.0% |
| ! | TATAGACTACATTTGATGAA+GGG | - | 38057:36174-36193 | None:intergenic | 25.0% |
| ! | TTATATTCTCATCTTTGCAA+AGG | + | 38057:35957-35976 | MS.gene69883:intron | 25.0% |
| ! | TTTGAATCAATCTGATTGTT+TGG | - | 38057:35782-35801 | None:intergenic | 25.0% |
| ! | TTTGTACATGTTTAGATTGA+TGG | + | 38057:33298-33317 | MS.gene69883:intron | 25.0% |
| !! | AAAAAAATGTACTTTCAGGT+GGG | + | 38057:33655-33674 | MS.gene69883:intron | 25.0% |
| !! | AATTTCAATATGGTTTGTAC+TGG | - | 38057:36073-36092 | None:intergenic | 25.0% |
| !! | ATTTTTGTTAAGTCCATCTT+TGG | - | 38057:33431-33450 | None:intergenic | 25.0% |
| !! | CAGTTTATGATTTTCATTAG+GGG | + | 38057:33575-33594 | MS.gene69883:intron | 25.0% |
| !! | GTTTATGTGTTTTATAGGAA+AGG | + | 38057:34195-34214 | MS.gene69883:intron | 25.0% |
| !!! | ATAAATCAAATAGCACTGAT+TGG | + | 38057:35365-35384 | MS.gene69883:intron | 25.0% |
| !!! | TATAAAAGCATTGTTTTTGG+TGG | + | 38057:34727-34746 | MS.gene69883:intron | 25.0% |
| !!! | TATAAGAGGTGTATTTTACA+AGG | + | 38057:36285-36304 | MS.gene69883:intron | 25.0% |
| !!! | TTTAATCGGTTTTTCATCAA+TGG | - | 38057:33727-33746 | None:intergenic | 25.0% |
| !!! | TTTTGATTAGGAAAGAAAAG+AGG | + | 38057:33851-33870 | MS.gene69883:intron | 25.0% |
| ACTTTATGATTGAACATACC+TGG | - | 38057:35318-35337 | None:intergenic | 30.0% | |
| AGAGCAAACAATTCAAAGTA+TGG | + | 38057:36412-36431 | MS.gene69883:CDS | 30.0% | |
| AGGTAAAACATTTCCAACAT+TGG | + | 38057:33938-33957 | MS.gene69883:intron | 30.0% | |
| ATTGAAAGTTGGAACAGTTT+GGG | + | 38057:36492-36511 | MS.gene69883:CDS | 30.0% | |
| CAAAAGAGTCACAAACATTA+AGG | - | 38057:35723-35742 | None:intergenic | 30.0% | |
| CTTCTTCAATCAAAATCTCA+AGG | + | 38057:32764-32783 | MS.gene69883:CDS | 30.0% | |
| GATATTATGTTCAAAACACC+AGG | - | 38057:34821-34840 | None:intergenic | 30.0% | |
| GGATTAACTAAAGGAAAAGA+AGG | + | 38057:33872-33891 | MS.gene69883:intron | 30.0% | |
| GTCTCACTTGAATTTCAATA+TGG | - | 38057:36083-36102 | None:intergenic | 30.0% | |
| TAAAAACTACTTGCAAGTGA+AGG | + | 38057:36603-36622 | MS.gene69883:CDS | 30.0% | |
| TAATTTACCACGAGAAAACA+AGG | - | 38057:32830-32849 | None:intergenic | 30.0% | |
| TATTCGTTGTAATTTACCTG+AGG | - | 38057:35542-35561 | None:intergenic | 30.0% | |
| TCATGATTAATCTTAGAGCT+TGG | + | 38057:35577-35596 | MS.gene69883:intron | 30.0% | |
| TCTTTCATTAATTGCATGGT+TGG | + | 38057:33141-33160 | MS.gene69883:intron | 30.0% | |
| TGAAAAACCGATTAAACCAT+CGG | + | 38057:33731-33750 | MS.gene69883:CDS | 30.0% | |
| TTCGCAAAAATCGTCAAATT+GGG | - | 38057:36221-36240 | None:intergenic | 30.0% | |
| TTTAAACATGCATTTCAAGG+TGG | - | 38057:33348-33367 | None:intergenic | 30.0% | |
| TTTCGCAAAAATCGTCAAAT+TGG | - | 38057:36222-36241 | None:intergenic | 30.0% | |
| ! | ATGATTTTCATTAGGGGTTT+AGG | + | 38057:33581-33600 | MS.gene69883:intron | 30.0% |
| ! | ATGCCTTCAATCTAAAATGT+CGG | - | 38057:34981-35000 | None:intergenic | 30.0% |
| ! | GTTTAGATTGATGGTCTATT+TGG | + | 38057:33307-33326 | MS.gene69883:intron | 30.0% |
| ! | TGTATTTTCATATTTACCCC+AGG | + | 38057:34432-34451 | MS.gene69883:intron | 30.0% |
| ! | TTGAACATAATATCTGGCTT+TGG | + | 38057:34827-34846 | MS.gene69883:CDS | 30.0% |
| ! | TTTTGTGGTATCTTACCTTT+TGG | + | 38057:33900-33919 | MS.gene69883:intron | 30.0% |
| !! | GGTGTTTTGAACATAATATC+TGG | + | 38057:34821-34840 | MS.gene69883:CDS | 30.0% |
| !! | TTGGTTTTCCTAATTCTCTA+CGG | + | 38057:35596-35615 | MS.gene69883:intron | 30.0% |
| !!! | TAAGAGTGCTACTACTTTTT+TGG | + | 38057:33254-33273 | MS.gene69883:intron | 30.0% |
| !!! | TAGGGGTTTAGGTTTTTTAA+AGG | + | 38057:33592-33611 | MS.gene69883:intron | 30.0% |
| ACATACCTGGTTGAAGAATA+AGG | - | 38057:35305-35324 | None:intergenic | 35.0% | |
| AGCAATGATCATACATAAGC+TGG | - | 38057:34077-34096 | None:intergenic | 35.0% | |
| AGCTAAAAGCAATCTTAAGC+CGG | + | 38057:35195-35214 | MS.gene69883:CDS | 35.0% | |
| ATCTGAGCAGATTGTTCATA+TGG | - | 38057:34305-34324 | None:intergenic | 35.0% | |
| ATCTGTGTGACATGAAAGAA+AGG | + | 38057:33110-33129 | MS.gene69883:intron | 35.0% | |
| ATTATGTTCAAAACACCAGG+AGG | - | 38057:34818-34837 | None:intergenic | 35.0% | |
| ATTGACACTAGATCCAAAGA+TGG | + | 38057:33415-33434 | MS.gene69883:intron | 35.0% | |
| CAAAAGATTGTCCAAGATTC+AGG | - | 38057:35122-35141 | None:intergenic | 35.0% | |
| CATACATAAGCTGGAAACTT+AGG | - | 38057:34068-34087 | None:intergenic | 35.0% | |
| CATTGAAAGTTGGAACAGTT+TGG | + | 38057:36491-36510 | MS.gene69883:CDS | 35.0% | |
| CCAAAAACTCATGTTTGTGT+TGG | + | 38057:33503-33522 | MS.gene69883:intron | 35.0% | |
| CTCATCTTATATCCACCAAA+AGG | - | 38057:36550-36569 | None:intergenic | 35.0% | |
| CTCTACAAATCAAGACTCAT+TGG | - | 38057:36105-36124 | None:intergenic | 35.0% | |
| TACCAGCATAGTAACGAATT+AGG | - | 38057:34349-34368 | None:intergenic | 35.0% | |
| TACTGTCTTCTCAAATGTTC+AGG | + | 38057:35907-35926 | MS.gene69883:CDS | 35.0% | |
| TAGTCACATGGATGTTGATA+AGG | + | 38057:34874-34893 | MS.gene69883:CDS | 35.0% | |
| TCAGATTGAAATTCCAATGC+TGG | + | 38057:34319-34338 | MS.gene69883:CDS | 35.0% | |
| TGAACATTTGAGAAGACAGT+AGG | - | 38057:35908-35927 | None:intergenic | 35.0% | |
| TGTAGCAAAACTATTTCACG+AGG | + | 38057:34662-34681 | MS.gene69883:CDS | 35.0% | |
| TGTATCTGTAACAATCATCC+AGG | + | 38057:36012-36031 | MS.gene69883:intron | 35.0% | |
| TTGTAATCTTTCTTGTAGGC+TGG | + | 38057:34788-34807 | MS.gene69883:intron | 35.0% | |
| TTGTGATGTTCAGATACTAG+AGG | + | 38057:35622-35641 | MS.gene69883:intron | 35.0% | |
| TTTCATATTTACCCCAGGTT+GGG | + | 38057:34437-34456 | MS.gene69883:intron | 35.0% | |
| ! | AAACTCATGTTTGTGTTGGT+TGG | + | 38057:33507-33526 | MS.gene69883:intron | 35.0% |
| ! | CAATCTAAAATGTCGGTACA+TGG | - | 38057:34974-34993 | None:intergenic | 35.0% |
| ! | CCAACACAAACATGAGTTTT+TGG | - | 38057:33506-33525 | None:intergenic | 35.0% |
| ! | CTACAAATTTGCCATCGATT+AGG | - | 38057:33779-33798 | None:intergenic | 35.0% |
| ! | TTGATGAAGGGTGCATTAAA+GGG | - | 38057:36162-36181 | None:intergenic | 35.0% |
| ! | TTTGATGAAGGGTGCATTAA+AGG | - | 38057:36163-36182 | None:intergenic | 35.0% |
| ! | TTTGATGCTGCAATTCCTTT+TGG | + | 38057:36532-36551 | MS.gene69883:CDS | 35.0% |
| ! | TTTGGTGGATATAAGATGAG+TGG | + | 38057:36550-36569 | MS.gene69883:CDS | 35.0% |
| ! | TTTTCATATTTACCCCAGGT+TGG | + | 38057:34436-34455 | MS.gene69883:intron | 35.0% |
| !! | ATTAGATCTGGCGTTGATAA+TGG | + | 38057:35827-35846 | MS.gene69883:CDS | 35.0% |
| !! | GTACCGACATTTTAGATTGA+AGG | + | 38057:34975-34994 | MS.gene69883:intron | 35.0% |
| !! | TTGACTAGAGCATTGAAAGT+TGG | + | 38057:36481-36500 | MS.gene69883:CDS | 35.0% |
| !! | TTTACTGGTTCAACTGATAC+TGG | + | 38057:35151-35170 | MS.gene69883:CDS | 35.0% |
| !!! | GAAAAGAAGGGTTGTTTTTG+TGG | + | 38057:33885-33904 | MS.gene69883:intron | 35.0% |
| AAATTGCAGCACTTGAGACT+TGG | + | 38057:34267-34286 | MS.gene69883:CDS | 40.0% | |
| AAATTTGTAGATGCTGCTGC+TGG | + | 38057:33789-33808 | MS.gene69883:CDS | 40.0% | |
| AATTGCAGCACTTGAGACTT+GGG | + | 38057:34268-34287 | MS.gene69883:CDS | 40.0% | |
| ATGTACAAATGTTCGAGACC+CGG | - | 38057:35426-35445 | None:intergenic | 40.0% | |
| CAATCTTAAGCCGGTAACTT+TGG | + | 38057:35204-35223 | MS.gene69883:CDS | 40.0% | |
| CACAATGACCGTAGAGAATT+AGG | - | 38057:35607-35626 | None:intergenic | 40.0% | |
| CACTTGAGACTTGGGATAAT+GGG | + | 38057:34276-34295 | MS.gene69883:CDS | 40.0% | |
| CATTTCCAACATTGGATCCA+AGG | + | 38057:33946-33965 | MS.gene69883:CDS | 40.0% | |
| CGGTGAGATGAATGTAATCA+CGG | + | 38057:33372-33391 | MS.gene69883:intron | 40.0% | |
| GATCACAGACAAACTCCAAA+AGG | - | 38057:33918-33937 | None:intergenic | 40.0% | |
| GCATCGTCGCAAACAATAAA+CGG | - | 38057:35247-35266 | None:intergenic | 40.0% | |
| GCTACATACAAAGCAGACAA+TGG | - | 38057:34648-34667 | None:intergenic | 40.0% | |
| GGATATAAGATGAGTGGACA+GGG | + | 38057:36556-36575 | MS.gene69883:CDS | 40.0% | |
| GGTGTTCTTTCTGACATTCA+GGG | + | 38057:35386-35405 | MS.gene69883:intron | 40.0% | |
| GTTGGGCAGATAAGATTCAT+GGG | + | 38057:34454-34473 | MS.gene69883:CDS | 40.0% | |
| TCCAAGCAAACATGAGAAGA+GGG | - | 38057:34566-34585 | None:intergenic | 40.0% | |
| TCTGTAACAATCATCCAGGA+TGG | + | 38057:36016-36035 | MS.gene69883:intron | 40.0% | |
| TCTTCTCATGTTTGCTTGGA+AGG | + | 38057:34566-34585 | MS.gene69883:CDS | 40.0% | |
| TGAGATGAATGTAATCACGG+TGG | + | 38057:33375-33394 | MS.gene69883:intron | 40.0% | |
| TGCAATGTCTGCACATGATA+TGG | - | 38057:34501-34520 | None:intergenic | 40.0% | |
| TGGAAAAGTTGTCCTTCAAC+TGG | + | 38057:35171-35190 | MS.gene69883:CDS | 40.0% | |
| TGGATATAAGATGAGTGGAC+AGG | + | 38057:36555-36574 | MS.gene69883:CDS | 40.0% | |
| TGGTCTATTTGGCAGAATCA+CGG | + | 38057:33318-33337 | MS.gene69883:intron | 40.0% | |
| TGGTGTTCTTTCTGACATTC+AGG | + | 38057:35385-35404 | MS.gene69883:intron | 40.0% | |
| TTCAAGTCAGGAACAGAACA+AGG | + | 38057:35515-35534 | MS.gene69883:CDS | 40.0% | |
| TTCCAAGCAAACATGAGAAG+AGG | - | 38057:34567-34586 | None:intergenic | 40.0% | |
| TTTACCACGAGAAAACAAGG+AGG | - | 38057:32827-32846 | None:intergenic | 40.0% | |
| ! | AATGTACTTTCAGGTGGGAA+TGG | + | 38057:33660-33679 | MS.gene69883:intron | 40.0% |
| ! | ACTTGCACCGATGGTTTAAT+CGG | - | 38057:33741-33760 | None:intergenic | 40.0% |
| ! | CACGCAAAGCATTTGATCAA+GGG | + | 38057:34036-34055 | MS.gene69883:CDS | 40.0% |
| ! | CTTTGCCTTATTCTTCAACC+AGG | + | 38057:35297-35316 | MS.gene69883:CDS | 40.0% |
| ! | CTTTTGCAGCTTGCATTTAC+TGG | + | 38057:35136-35155 | MS.gene69883:intron | 40.0% |
| ! | GTGATGCTTTGTTCTCAATC+TGG | - | 38057:36255-36274 | None:intergenic | 40.0% |
| ! | TGTTCTGTTCCTGACTTGAA+TGG | - | 38057:35515-35534 | None:intergenic | 40.0% |
| ! | TTTGGAGTTTGTCTGTGATC+AGG | + | 38057:33918-33937 | MS.gene69883:intron | 40.0% |
| !! | CATGGTTGGTACTACTTTTG+TGG | + | 38057:33155-33174 | MS.gene69883:intron | 40.0% |
| !! | GGAGTTTGTTGAGAAAGCAA+AGG | + | 38057:35460-35479 | MS.gene69883:CDS | 40.0% |
| !!! | CACAAACATGAGTTTTTGGC+AGG | - | 38057:33502-33521 | None:intergenic | 40.0% |
| AACATTGGATCCAAGGACAG+GGG | + | 38057:33953-33972 | MS.gene69883:CDS | 45.0% | |
| AATCTTATCTGCCCAACCTG+GGG | - | 38057:34451-34470 | None:intergenic | 45.0% | |
| AATGGCGCTACACTTGAAAC+TGG | + | 38057:35845-35864 | MS.gene69883:CDS | 45.0% | |
| ACATGATATGGTCCATCAGC+TGG | - | 38057:34489-34508 | None:intergenic | 45.0% | |
| AGCCATGCTGGATTCTTCAA+AGG | - | 38057:36640-36659 | None:intergenic | 45.0% | |
| AGTGATTGCTCATGTTGCTG+AGG | + | 38057:33977-33996 | MS.gene69883:CDS | 45.0% | |
| ATGAGAAGAGGGAAGTTCCA+TGG | - | 38057:34555-34574 | None:intergenic | 45.0% | |
| ATTGTCCAAGATTCAGGCAC+TGG | - | 38057:35116-35135 | None:intergenic | 45.0% | |
| CAACATTGGATCCAAGGACA+GGG | + | 38057:33952-33971 | MS.gene69883:CDS | 45.0% | |
| CAGACATTGCACGAACCAAT+TGG | + | 38057:34510-34529 | MS.gene69883:CDS | 45.0% | |
| CGCCTAATTCGTTACTATGC+TGG | + | 38057:34344-34363 | MS.gene69883:CDS | 45.0% | |
| CTACAGCACGTTTCAAAGCA+CGG | - | 38057:35487-35506 | None:intergenic | 45.0% | |
| CTCATGTTTGCTTGGAAGGT+TGG | + | 38057:34570-34589 | MS.gene69883:CDS | 45.0% | |
| CTCTTTGAATCACCTCACCA+AGG | - | 38057:36396-36415 | None:intergenic | 45.0% | |
| GAAACTGGAGGAGAAAGACT+TGG | + | 38057:35860-35879 | MS.gene69883:CDS | 45.0% | |
| GAATCTTATCTGCCCAACCT+GGG | - | 38057:34452-34471 | None:intergenic | 45.0% | |
| GCACTTGAGACTTGGGATAA+TGG | + | 38057:34275-34294 | MS.gene69883:CDS | 45.0% | |
| GGTTGGGCAGATAAGATTCA+TGG | + | 38057:34453-34472 | MS.gene69883:intron | 45.0% | |
| GTAGGAGATCCATTCAAGTC+AGG | + | 38057:35503-35522 | MS.gene69883:CDS | 45.0% | |
| GTGATTGCTCATGTTGCTGA+GGG | + | 38057:33978-33997 | MS.gene69883:CDS | 45.0% | |
| TAAGCTGGAAACTTAGGCCA+CGG | - | 38057:34062-34081 | None:intergenic | 45.0% | |
| TACAGCACGTTTCAAAGCAC+GGG | - | 38057:35486-35505 | None:intergenic | 45.0% | |
| TCAGGTGGGAATGGTTATCT+GGG | + | 38057:33669-33688 | MS.gene69883:intron | 45.0% | |
| TCCCTCTTCTCATGTTTGCT+TGG | + | 38057:34562-34581 | MS.gene69883:CDS | 45.0% | |
| TGAATCTTATCTGCCCAACC+TGG | - | 38057:34453-34472 | None:intergenic | 45.0% | |
| TGTACATGAACGTGTGCATG+AGG | + | 38057:35439-35458 | MS.gene69883:CDS | 45.0% | |
| TTCAGGTGGGAATGGTTATC+TGG | + | 38057:33668-33687 | MS.gene69883:intron | 45.0% | |
| TTGCTGGTCAGATCATTCCA+TGG | + | 38057:34535-34554 | MS.gene69883:CDS | 45.0% | |
| ! | AGGAGAAAGACTTGGTAGCA+AGG | + | 38057:35868-35887 | MS.gene69883:CDS | 45.0% |
| ! | CACCTTTGAAGAATCCAGCA+TGG | + | 38057:36635-36654 | MS.gene69883:CDS | 45.0% |
| ! | GATGCTGCAATTCCTTTTGG+TGG | + | 38057:36535-36554 | MS.gene69883:CDS | 45.0% |
| ! | GCACGCAAAGCATTTGATCA+AGG | + | 38057:34035-34054 | MS.gene69883:CDS | 45.0% |
| ! | GGAGAAAGACTTGGTAGCAA+GGG | + | 38057:35869-35888 | MS.gene69883:CDS | 45.0% |
| ! | GTTGATTGATTCAGGGACCT+TGG | + | 38057:36376-36395 | MS.gene69883:intron | 45.0% |
| ! | TCAAAGTATGGTCTTGCAGC+AGG | + | 38057:36424-36443 | MS.gene69883:CDS | 45.0% |
| !! | TGCTTTTAGCTGCCAGTTGA+AGG | - | 38057:35186-35205 | None:intergenic | 45.0% |
| !! | AAAAAAAGAAAATAAAAATA+GGG | - | 38057:36330-36349 | None:intergenic | 5.0% |
| !! | TAAAAAAAGAAAATAAAAAT+AGG | - | 38057:36331-36350 | None:intergenic | 5.0% |
| AAGCATTTGATCAAGGGCCG+TGG | + | 38057:34042-34061 | MS.gene69883:CDS | 50.0% | |
| ACCACGAGAAAACAAGGAGG+TGG | - | 38057:32824-32843 | None:intergenic | 50.0% | |
| AGGAACAGAACAAGGTCCTC+AGG | + | 38057:35523-35542 | MS.gene69883:CDS | 50.0% | |
| AGTGGACAGGGCAGAGAAAA+AGG | + | 38057:36568-36587 | MS.gene69883:CDS | 50.0% | |
| ATCTGACCAGCAACGCCAAT+TGG | - | 38057:34528-34547 | None:intergenic | 50.0% | |
| CACACTCAGCTCCTAATCGA+TGG | + | 38057:33765-33784 | MS.gene69883:CDS | 50.0% | |
| CCAACATTGGATCCAAGGAC+AGG | + | 38057:33951-33970 | MS.gene69883:CDS | 50.0% | |
| CCACCAAGCTCCAAAGTTAC+CGG | - | 38057:35217-35236 | None:intergenic | 50.0% | |
| CCTGTCCTTGGATCCAATGT+TGG | - | 38057:33954-33973 | None:intergenic | 50.0% | |
| CGAATTAGGCGAACCAGCAT+TGG | - | 38057:34335-34354 | None:intergenic | 50.0% | |
| CGTTACTATGCTGGTACGTG+CGG | + | 38057:34353-34372 | MS.gene69883:intron | 50.0% | |
| TGCTGCTCTTGCTAGTCACA+TGG | + | 38057:34862-34881 | MS.gene69883:CDS | 50.0% | |
| TTGATTCAGGGACCTTGGTG+AGG | + | 38057:36381-36400 | MS.gene69883:intron | 50.0% | |
| TTGCAATCTGCATGCCATCC+TGG | - | 38057:36033-36052 | None:intergenic | 50.0% | |
| TTGGAAGGTTGGACCTGCAT+TGG | + | 38057:34581-34600 | MS.gene69883:CDS | 50.0% | |
| ! | CATCGATTAGGAGCTGAGTG+TGG | - | 38057:33767-33786 | None:intergenic | 50.0% |
| !! | AAGCCGGTAACTTTGGAGCT+TGG | + | 38057:35211-35230 | MS.gene69883:CDS | 50.0% |
| !! | CGGTAACTTTGGAGCTTGGT+GGG | + | 38057:35215-35234 | MS.gene69883:CDS | 50.0% |
| !! | CGTGCTTTGAAACGTGCTGT+AGG | + | 38057:35485-35504 | MS.gene69883:CDS | 50.0% |
| !!! | TCCACCTCCTTGTTTTCTCG+TGG | + | 38057:32820-32839 | MS.gene69883:CDS | 50.0% |
| AGGGACAATGTTGCTGTGCC+GGG | + | 38057:35405-35424 | MS.gene69883:intron | 55.0% | |
| CACGAACCAATTGGCGTTGC+TGG | + | 38057:34519-34538 | MS.gene69883:CDS | 55.0% | |
| CAGGGACAATGTTGCTGTGC+CGG | + | 38057:35404-35423 | MS.gene69883:intron | 55.0% | |
| CCTGTCCAGTGCCTGAATCT+TGG | + | 38057:35108-35127 | MS.gene69883:intron | 55.0% | |
| GCAATCACTTCCCCTGTCCT+TGG | - | 38057:33966-33985 | None:intergenic | 55.0% | |
| GGCGCTACACTTGAAACTGG+AGG | + | 38057:35848-35867 | MS.gene69883:CDS | 55.0% | |
| GGTGGGAATGGTTATCTGGG+TGG | + | 38057:33672-33691 | MS.gene69883:intron | 55.0% | |
| TGCTTTGCGTGCAGCTGCAA+CGG | - | 38057:34027-34046 | None:intergenic | 55.0% | |
| TTGTAGGCTGGACTTCCTCC+TGG | + | 38057:34800-34819 | MS.gene69883:intron | 55.0% | |
| !! | CCAAGATTCAGGCACTGGAC+AGG | - | 38057:35111-35130 | None:intergenic | 55.0% |
| !! | CCGGTAACTTTGGAGCTTGG+TGG | + | 38057:35214-35233 | MS.gene69883:CDS | 55.0% |
| !! | TCTGGCTTTGGTCCAACTGC+AGG | + | 38057:34839-34858 | MS.gene69883:CDS | 55.0% |
| CTATGCTGGTACGTGCGGTG+TGG | + | 38057:34358-34377 | MS.gene69883:intron | 60.0% | |
| GCAAGAGCAGCACCTGCAGT+TGG | - | 38057:34854-34873 | None:intergenic | 60.0% | |
| GGGCTCACAGTTCCAGCTGA+TGG | + | 38057:34474-34493 | MS.gene69883:CDS | 60.0% | |
| GTGTTGCCACACGCCAATGC+AGG | - | 38057:34597-34616 | None:intergenic | 60.0% | |
| ! | GTTGGACCTGCATTGGCGTG+TGG | + | 38057:34588-34607 | MS.gene69883:CDS | 60.0% |
| !! | GTGTGGTCGACTTGCACCGA+TGG | - | 38057:33750-33769 | None:intergenic | 60.0% |
| GCTGGTACGTGCGGTGTGGA+AGG | + | 38057:34362-34381 | MS.gene69883:intron | 65.0% | |
| GGTACGTGCGGTGTGGAAGG+TGG | + | 38057:34365-34384 | MS.gene69883:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 38057 | gene | 32760 | 36663 | 32760 | ID=MS.gene69883 |
| 38057 | mRNA | 32760 | 36663 | 32760 | ID=MS.gene69883.t1;Parent=MS.gene69883 |
| 38057 | exon | 32760 | 32841 | 32760 | ID=MS.gene69883.t1.exon1;Parent=MS.gene69883.t1 |
| 38057 | CDS | 32760 | 32841 | 32760 | ID=cds.MS.gene69883.t1;Parent=MS.gene69883.t1 |
| 38057 | exon | 33673 | 33810 | 33673 | ID=MS.gene69883.t1.exon2;Parent=MS.gene69883.t1 |
| 38057 | CDS | 33673 | 33810 | 33673 | ID=cds.MS.gene69883.t1;Parent=MS.gene69883.t1 |
| 38057 | exon | 33940 | 34082 | 33940 | ID=MS.gene69883.t1.exon3;Parent=MS.gene69883.t1 |
| 38057 | CDS | 33940 | 34082 | 33940 | ID=cds.MS.gene69883.t1;Parent=MS.gene69883.t1 |
| 38057 | exon | 34212 | 34365 | 34212 | ID=MS.gene69883.t1.exon4;Parent=MS.gene69883.t1 |
| 38057 | CDS | 34212 | 34365 | 34212 | ID=cds.MS.gene69883.t1;Parent=MS.gene69883.t1 |
| 38057 | exon | 34454 | 34683 | 34454 | ID=MS.gene69883.t1.exon5;Parent=MS.gene69883.t1 |
| 38057 | CDS | 34454 | 34683 | 34454 | ID=cds.MS.gene69883.t1;Parent=MS.gene69883.t1 |
| 38057 | exon | 34806 | 34895 | 34806 | ID=MS.gene69883.t1.exon6;Parent=MS.gene69883.t1 |
| 38057 | CDS | 34806 | 34895 | 34806 | ID=cds.MS.gene69883.t1;Parent=MS.gene69883.t1 |
| 38057 | exon | 35145 | 35318 | 35145 | ID=MS.gene69883.t1.exon7;Parent=MS.gene69883.t1 |
| 38057 | CDS | 35145 | 35318 | 35145 | ID=cds.MS.gene69883.t1;Parent=MS.gene69883.t1 |
| 38057 | exon | 35407 | 35544 | 35407 | ID=MS.gene69883.t1.exon8;Parent=MS.gene69883.t1 |
| 38057 | CDS | 35407 | 35544 | 35407 | ID=cds.MS.gene69883.t1;Parent=MS.gene69883.t1 |
| 38057 | exon | 35791 | 35928 | 35791 | ID=MS.gene69883.t1.exon9;Parent=MS.gene69883.t1 |
| 38057 | CDS | 35791 | 35928 | 35791 | ID=cds.MS.gene69883.t1;Parent=MS.gene69883.t1 |
| 38057 | exon | 36034 | 36095 | 36034 | ID=MS.gene69883.t1.exon10;Parent=MS.gene69883.t1 |
| 38057 | CDS | 36034 | 36095 | 36034 | ID=cds.MS.gene69883.t1;Parent=MS.gene69883.t1 |
| 38057 | exon | 36390 | 36663 | 36390 | ID=MS.gene69883.t1.exon11;Parent=MS.gene69883.t1 |
| 38057 | CDS | 36390 | 36663 | 36390 | ID=cds.MS.gene69883.t1;Parent=MS.gene69883.t1 |
| Gene Sequence |
| Protein sequence |
