AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06116

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06116.t1 MTR_8g099885 98.202 723 13 0 1 723 1 723 0.0 1483
MS.gene06116.t1 MTR_3g108170 32.331 266 49 6 149 395 12 165 1.75e-19 88.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06116.t1 AT1G55090 82.011 706 124 1 1 703 1 706 0.0 1253

Find 191 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTTCTGCTCCCTCTTTC+TGG 0.065747 4.2:+3957536 MS.gene06116:CDS
CAACATCATTTAAAGAAAAT+TGG 0.105248 4.2:-3956782 None:intergenic
CATGCTGAGCTTGCATTAAA+TGG 0.156645 4.2:+3956352 MS.gene06116:CDS
TACGAGGAACTATCTGTTTA+TGG 0.202343 4.2:+3960372 MS.gene06116:CDS
TTGGACCTGGTTGCTGGTTA+TGG 0.219491 4.2:+3957486 MS.gene06116:CDS
ATCTTGCATTATAAAGAAAT+TGG 0.239593 4.2:-3961739 None:intergenic
GTTATTCACCAGAGGATAAT+AGG 0.260783 4.2:+3961705 MS.gene06116:CDS
GATGACGGCGCCGGCTTGTT+TGG 0.281693 4.2:-3954933 None:intergenic
TGGTCCAGTTTCCATGTTCC+AGG 0.285193 4.2:+3960419 MS.gene06116:CDS
CCATCTTGGTTACTCATCTT+TGG 0.286324 4.2:+3959808 MS.gene06116:CDS
TCCTCTGTTGCTGCGATTGT+TGG 0.297915 4.2:+3957572 MS.gene06116:CDS
CACCTTGATGTTAGCATTGA+TGG 0.301302 4.2:+3958686 MS.gene06116:CDS
TGGACCTGGTTGCTGGTTAT+GGG 0.301739 4.2:+3957487 MS.gene06116:CDS
ACGCCTTTCTGTTCCTCTTA+AGG 0.304612 4.2:+3957047 MS.gene06116:CDS
TGTTCCAGTGTTGTGGTTAA+TGG 0.316625 4.2:+3956738 MS.gene06116:CDS
TCCTCATGTTTCTGAGGCAT+TGG 0.318545 4.2:+3955359 MS.gene06116:CDS
GAGTTATTACGAATGGTTAA+TGG 0.319596 4.2:-3955020 None:intergenic
CAAGATGGCCGTATCAATTT+CGG 0.328849 4.2:+3961756 MS.gene06116:CDS
AAATCAGTTCCATTTGGTTA+TGG 0.330419 4.2:+3955387 MS.gene06116:CDS
GCAGCTTGATGAAGTTGATA+TGG 0.333483 4.2:+3960341 MS.gene06116:intron
TGGAGATGGAGTCTTTGATT+TGG 0.334425 4.2:-3954907 None:intergenic
GTCTTTGATTTGGAGAAGAT+TGG 0.335730 4.2:-3954897 None:intergenic
TGGTAGGTTGCAAGCCTTAG+AGG 0.338452 4.2:+3956928 MS.gene06116:intron
CATCAAGCTTTCTAAGTTGA+TGG 0.339716 4.2:-3956408 None:intergenic
GGCGCCGGCTTGTTTGGATT+TGG 0.343154 4.2:-3954927 None:intergenic
TCAAGTATTATTCGATAAAT+CGG 0.347943 4.2:+3961494 MS.gene06116:CDS
CTCTCGGAACCTTTGATAAT+AGG 0.348000 4.2:-3955192 None:intergenic
TAGCATTTGGACCTGGTTGC+TGG 0.357685 4.2:+3957480 MS.gene06116:CDS
CACAGTATAAAATACTCTTT+TGG 0.361951 4.2:-3958227 None:intergenic
AGCTCCACCCACAGCTGAAC+TGG 0.364040 4.2:+3959844 MS.gene06116:CDS
CCTTGGGTTCACAACAAACC+TGG 0.370888 4.2:+3959369 MS.gene06116:CDS
ATGCTGAGCTTGCATTAAAT+GGG 0.371833 4.2:+3956353 MS.gene06116:CDS
AAAGGAAGACAAAGATTATA+TGG 0.378341 4.2:-3957012 None:intergenic
ATCATTTGCAAGCCACATCT+TGG 0.378781 4.2:-3955265 None:intergenic
TGTTAGCATCACTCTTGCCT+TGG 0.378857 4.2:+3959352 MS.gene06116:CDS
GTGGTCTTCACAGCCATAAC+CGG 0.383872 4.2:-3954981 None:intergenic
TCTTTGTTTCAAACACTTAC+GGG 0.384485 4.2:+3958728 MS.gene06116:CDS
GTCTTTGTTTCAAACACTTA+CGG 0.384605 4.2:+3958727 MS.gene06116:CDS
GACAATAAACTAACCTTAAG+AGG 0.386044 4.2:-3957060 None:intergenic
GTTAGCATCACTCTTGCCTT+GGG 0.387419 4.2:+3959353 MS.gene06116:CDS
AAGAAATATTGATTGGTGAT+TGG 0.389174 4.2:+3955139 MS.gene06116:CDS
AACATCATTTAAAGAAAATT+GGG 0.390775 4.2:-3956781 None:intergenic
TTACGAAGAAGTGGAGCATC+TGG 0.393568 4.2:+3957515 MS.gene06116:CDS
CCTCATGTTTCTGAGGCATT+GGG 0.396761 4.2:+3955360 MS.gene06116:CDS
ATAACCGGGGATTTCGAGTT+CGG 0.397139 4.2:-3954966 None:intergenic
CGGATTGGAAACTATATAGA+TGG 0.397855 4.2:+3958175 MS.gene06116:CDS
TTTCCTTCAGAAATTGCAAA+TGG 0.399802 4.2:+3958124 MS.gene06116:intron
ACTACATACCTCGGCATGAT+AGG 0.403171 4.2:-3961542 None:intergenic
CCTGAGGAGGAAATAGCATT+TGG 0.407961 4.2:+3957467 MS.gene06116:CDS
CTTTACAACTTGCTTGCTCT+TGG 0.410098 4.2:-3956966 None:intergenic
AGCTACTTAAAGATCCTCTA+AGG 0.411025 4.2:-3956942 None:intergenic
AAGGTACTGGCAGAGGAAAT+TGG 0.413079 4.2:+3958656 MS.gene06116:CDS
TATACCTGGAACATGGAAAC+TGG 0.415696 4.2:-3960423 None:intergenic
AACTTCGATGGTTTACTGCT+TGG 0.416004 4.2:+3955301 MS.gene06116:CDS
TTTAAATGATGTTGAGGTTG+TGG 0.424124 4.2:+3956791 MS.gene06116:CDS
CGATGGGCAGCCAGCCATCT+TGG 0.433435 4.2:+3959794 MS.gene06116:CDS
TTAGATGGTGTTGGTGGAAT+GGG 0.436891 4.2:+3961857 MS.gene06116:CDS
GATGGTGGTCGCCTTTACTA+TGG 0.445130 4.2:+3956505 MS.gene06116:CDS
GAACTCGAAATCCCCGGTTA+TGG 0.445759 4.2:+3954968 MS.gene06116:CDS
ACTTACCTTTCACGACCATC+TGG 0.449690 4.2:-3957604 None:intergenic
TAACCGGGGATTTCGAGTTC+GGG 0.455865 4.2:-3954965 None:intergenic
TTCCTTCAGAAATTGCAAAT+GGG 0.460972 4.2:+3958125 MS.gene06116:intron
TTCCGAGAGATACAATTGTC+AGG 0.462968 4.2:+3955206 MS.gene06116:CDS
CAATCTCAACCAATGGGCTA+TGG 0.470887 4.2:+3954865 MS.gene06116:CDS
TCAGTGGCAGCTTCATTAGA+TGG 0.472410 4.2:+3961842 MS.gene06116:CDS
GTGTTTGAAACAAAGACAAA+AGG 0.472972 4.2:-3958721 None:intergenic
TCATTTGCAAGCCACATCTT+GGG 0.476765 4.2:-3955264 None:intergenic
GCCGGCGCCGTCATCCGTCT+TGG 0.477437 4.2:+3954941 MS.gene06116:CDS
CGATGAACTCGTACATGAGC+TGG 0.481111 4.2:+3961784 MS.gene06116:CDS
CTCAGAATCTATGTTACAGA+TGG 0.482926 4.2:+3961422 MS.gene06116:intron
GGCTTGTTTGGATTTGGAGA+TGG 0.485111 4.2:-3954921 None:intergenic
GATGGCTGGCTGCCCATCGC+AGG 0.487074 4.2:-3959790 None:intergenic
TGTTTGAAAGAAATATTGAT+TGG 0.487416 4.2:+3955132 MS.gene06116:CDS
GGGAGCTCCAACGTGGATGA+AGG 0.489079 4.2:+3959408 MS.gene06116:CDS
GATAACATAGTGTGTAGTAT+TGG 0.489547 4.2:+3955165 MS.gene06116:CDS
TGTTTATGGGATCTGAAAAC+AGG 0.489699 4.2:+3958248 MS.gene06116:CDS
CCAAATGCTATTTCCTCCTC+AGG 0.490563 4.2:-3957467 None:intergenic
ATCTTCGGTCATTCCTGCGA+TGG 0.492236 4.2:+3959777 MS.gene06116:CDS
AATGGTGATGTTGTTGCTCA+AGG 0.499320 4.2:+3956756 MS.gene06116:CDS
TGGCAGAGGAAATTGGTTCA+TGG 0.503133 4.2:+3958663 MS.gene06116:CDS
TTAACAAAACCATAACCAAA+TGG 0.503166 4.2:-3955396 None:intergenic
ACTTCCTCCTCATGTTTCTG+AGG 0.509841 4.2:+3955353 MS.gene06116:CDS
CTGCTTACTTATACTGCCAA+TGG 0.510061 4.2:-3959753 None:intergenic
GTATAAGTAAGCAGGATCTT+CGG 0.511899 4.2:+3959762 MS.gene06116:CDS
ATTAGATGGTGTTGGTGGAA+TGG 0.513323 4.2:+3961856 MS.gene06116:CDS
AATCACGATGAGGCTCTTGA+AGG 0.517734 4.2:+3954832 None:intergenic
CATTGGCAGTATAAGTAAGC+AGG 0.517825 4.2:+3959754 MS.gene06116:CDS
TCCAAGACGGATGACGGCGC+CGG 0.522702 4.2:-3954942 None:intergenic
AAAGCTGATGCAATACGGAT+TGG 0.522800 4.2:+3958160 MS.gene06116:CDS
GGCGACCACCATCACAGCCT+TGG 0.524751 4.2:-3956495 None:intergenic
AATTTCTTTATAATGCAAGA+TGG 0.525324 4.2:+3961741 MS.gene06116:CDS
GTTTACTGCTTGGAAACAAA+GGG 0.526848 4.2:+3955311 MS.gene06116:CDS
AAGGTCGCGAGCCAAGGTAC+TGG 0.527618 4.2:+3958643 MS.gene06116:CDS
TACTTGCAATCTCAACCAAT+GGG 0.527623 4.2:+3954859 MS.gene06116:CDS
CTTGGGTTCACAACAAACCT+GGG 0.529526 4.2:+3959370 MS.gene06116:CDS
TCCTTCAGAAATTGCAAATG+GGG 0.529905 4.2:+3958126 MS.gene06116:intron
TGTTTGAAACAAAGACAAAA+GGG 0.530094 4.2:-3958720 None:intergenic
AACCTGACAATTGTATCTCT+CGG 0.530713 4.2:-3955208 None:intergenic
CTGTCTGCTCCACCAGAAAG+AGG 0.531787 4.2:-3957548 None:intergenic
TGGGATTATTTACGAAGAAG+TGG 0.532803 4.2:+3957506 MS.gene06116:CDS
GCAAATTCTGTGCTGTCTGT+AGG 0.533182 4.2:-3958205 None:intergenic
TGGTCTTCACAGCCATAACC+GGG 0.535392 4.2:-3954980 None:intergenic
AAGTTAAAGCTGATGCAATA+CGG 0.540512 4.2:+3958155 MS.gene06116:CDS
TGCTTACTTATACTGCCAAT+GGG 0.542445 4.2:-3959752 None:intergenic
AATTTCCTCTGCCAGTACCT+TGG 0.542921 4.2:-3958654 None:intergenic
GCAAGCAAGTTGTAAAGTCA+AGG 0.543230 4.2:+3956972 MS.gene06116:CDS
ATTGGAATGCCTATTATCAA+AGG 0.545628 4.2:+3955183 MS.gene06116:CDS
TTTCTGCTCCCTCTTTCTGG+TGG 0.545789 4.2:+3957539 MS.gene06116:CDS
CAGCTTGATGAAGTTGATAT+GGG 0.547546 4.2:+3960342 MS.gene06116:intron
AGATCAAACCTATTATCCTC+TGG 0.548297 4.2:-3961713 None:intergenic
GGTTTACTGCTTGGAAACAA+AGG 0.548451 4.2:+3955310 MS.gene06116:CDS
GGCTCCAGTTCAGCTGTGGG+TGG 0.548598 4.2:-3959848 None:intergenic
CTCCATCAATGCTAACATCA+AGG 0.548950 4.2:-3958688 None:intergenic
CTACTTGCAATCTCAACCAA+TGG 0.551398 4.2:+3954858 MS.gene06116:CDS
TCAGAATCTATGTTACAGAT+GGG 0.553971 4.2:+3961423 MS.gene06116:intron
GCGAGCCAAGGTACTGGCAG+AGG 0.554709 4.2:+3958649 MS.gene06116:CDS
GCAGCTTCATTAGATGGTGT+TGG 0.556086 4.2:+3961848 MS.gene06116:CDS
TGACTGTAGTTAGAACGTAT+AGG 0.558038 4.2:-3959869 None:intergenic
GGGAAAGCGACCACGCTACA+AGG 0.558835 4.2:+3958748 MS.gene06116:CDS
AATCGAATTCCATAGCCCAT+TGG 0.559414 4.2:-3954874 None:intergenic
GAAGTTGAAAATCATCAAGT+TGG 0.562415 4.2:-3955335 None:intergenic
TTCGGGTCCAAGACGGATGA+CGG 0.562754 4.2:-3954948 None:intergenic
GTAATTACAGAGAACTTCGA+TGG 0.562942 4.2:+3955289 MS.gene06116:CDS
AGTAATCACCAAGGCTGTGA+TGG 0.563160 4.2:+3956487 MS.gene06116:CDS
GCTTCATTAGATGGTGTTGG+TGG 0.563347 4.2:+3961851 MS.gene06116:CDS
TATACGTTCTAACTACAGTC+AGG 0.563485 4.2:+3959871 MS.gene06116:CDS
ATCTCCAAATCCAAACAAGC+CGG 0.565116 4.2:+3954923 MS.gene06116:CDS
TATAGGCTCCAGTTCAGCTG+TGG 0.566047 4.2:-3959852 None:intergenic
CCAGGTTTGTTGTGAACCCA+AGG 0.567416 4.2:-3959369 None:intergenic
CATGAGATATACCTGGAACA+TGG 0.570810 4.2:-3960430 None:intergenic
TCTTCGGTCATTCCTGCGAT+GGG 0.572859 4.2:+3959778 MS.gene06116:CDS
AATGACAAGGTCGCGAGCCA+AGG 0.572991 4.2:+3958637 MS.gene06116:CDS
ATGAAGCTGCCACTGACTCA+TGG 0.573520 4.2:-3961835 None:intergenic
AGATGAGTAACCAAGATGGC+TGG 0.577528 4.2:-3959804 None:intergenic
TTGTTTATACAGGTAGATGG+TGG 0.580190 4.2:+3959264 MS.gene06116:intron
TTTCGAGTTCGGGTCCAAGA+CGG 0.582536 4.2:-3954955 None:intergenic
ATCACCATTAACCACAACAC+TGG 0.583409 4.2:-3956742 None:intergenic
CATACCTCGGCATGATAGGA+AGG 0.583769 4.2:-3961538 None:intergenic
GGAATGGGAGTTGCTGCCGC+AGG 0.585359 4.2:+3961872 MS.gene06116:CDS
CATTCAAGCTCGAATCAGAA+TGG 0.587686 4.2:+3959317 MS.gene06116:CDS
ATAGGCTCCAGTTCAGCTGT+GGG 0.591935 4.2:-3959851 None:intergenic
AAGATGTGGCTTGCAAATGA+TGG 0.599672 4.2:+3955267 MS.gene06116:CDS
TAATGCAAGCTCAGCATGAG+GGG 0.602155 4.2:-3956347 None:intergenic
TGGTGTCGAGTTCTAAGAAG+TGG 0.603974 4.2:-3955000 None:intergenic
TAATCCCATAACCAGCAACC+AGG 0.604169 4.2:-3957491 None:intergenic
AGATGGATGTTCCAGTGTTG+TGG 0.609611 4.2:+3956731 MS.gene06116:intron
TGTCTGCTCCACCAGAAAGA+GGG 0.609748 4.2:-3957547 None:intergenic
TTTAATGCAAGCTCAGCATG+AGG 0.609788 4.2:-3956349 None:intergenic
GGAGCTCCAACGTGGATGAA+GGG 0.610939 4.2:+3959409 MS.gene06116:CDS
AAAATATCACTCTCCTGAGG+AGG 0.616399 4.2:+3957454 MS.gene06116:CDS
TTATGATACGACCCAAGATG+TGG 0.618671 4.2:+3955253 MS.gene06116:CDS
TCAGCGGATATAAATCCCAT+TGG 0.619764 4.2:+3959737 MS.gene06116:CDS
GAGGAAATAGCATTTGGACC+TGG 0.620903 4.2:+3957473 MS.gene06116:CDS
TGTTGGATGCATGTGCCAGA+TGG 0.622175 4.2:+3957589 MS.gene06116:CDS
TAACCTTAAGAGGAACAGAA+AGG 0.625303 4.2:-3957050 None:intergenic
ATCAGCAAACCATGAGTCAG+TGG 0.626159 4.2:+3961826 MS.gene06116:CDS
TTAATGCAAGCTCAGCATGA+GGG 0.627773 4.2:-3956348 None:intergenic
AATCACCAAGGCTGTGATGG+TGG 0.627776 4.2:+3956490 MS.gene06116:CDS
ACGCAACCCTTCATCCACGT+TGG 0.629155 4.2:-3959415 None:intergenic
AAAATTGACTCCATCACAAG+TGG 0.630195 4.2:+3961450 MS.gene06116:CDS
GAAGTGTTTATGAATGCAAG+CGG 0.632138 4.2:+3956379 MS.gene06116:CDS
ATAGGTGCTACTCATACTCG+TGG 0.632910 4.2:+3956448 MS.gene06116:CDS
CATTCTTAGAGCTATTGCAG+TGG 0.633093 4.2:+3956294 MS.gene06116:intron
TGCTGAGCTTGCATTAAATG+GGG 0.634241 4.2:+3956354 MS.gene06116:CDS
TTATATGGTACATCTACTGA+AGG 0.636830 4.2:-3956997 None:intergenic
CTTGCAGAGTTATTCACCAG+AGG 0.641776 4.2:+3961697 MS.gene06116:intron
AACGTGGATGAAGGGTTGCG+TGG 0.643125 4.2:+3959417 MS.gene06116:CDS
CCAAAGATGAGTAACCAAGA+TGG 0.644012 4.2:-3959808 None:intergenic
GGACCCGAACTCGAAATCCC+CGG 0.648427 4.2:+3954962 MS.gene06116:CDS
GACACCTTCCTATCATGCCG+AGG 0.650724 4.2:+3961534 MS.gene06116:CDS
CAGAATCTATGTTACAGATG+GGG 0.651806 4.2:+3961424 MS.gene06116:intron
AATTCAGTCACCTTGTAGCG+TGG 0.653429 4.2:-3958758 None:intergenic
TGTCTTGGGGAGCTCCAACG+TGG 0.667789 4.2:+3959401 MS.gene06116:CDS
CCCAATGCCTCAGAAACATG+AGG 0.670620 4.2:-3955360 None:intergenic
AATGCAAGCTCAGCATGAGG+GGG 0.672892 4.2:-3956346 None:intergenic
GGCATGATAGGAAGGTGTCA+AGG 0.674042 4.2:-3961530 None:intergenic
GATAAAATATCACTCTCCTG+AGG 0.674234 4.2:+3957451 MS.gene06116:intron
ATGTGCCAGATGGTCGTGAA+AGG 0.676922 4.2:+3957599 MS.gene06116:CDS
GTTGCAGTTCGGAAATGACA+AGG 0.688965 4.2:+3958624 MS.gene06116:intron
ACATGGAAACTGGACCACAA+CGG 0.692287 4.2:-3960413 None:intergenic
CCCAAGACAAGATAAAACCC+AGG 0.699587 4.2:-3959387 None:intergenic
ACAGTATGATTGCAGCTCAG+CGG 0.700171 4.2:+3959721 MS.gene06116:intron
TCCAACAATCGCAGCAACAG+AGG 0.708792 4.2:-3957573 None:intergenic
AATGCCTCAGAAACATGAGG+AGG 0.716948 4.2:-3955357 None:intergenic
GGTGCTACTCATACTCGTGG+AGG 0.717392 4.2:+3956451 MS.gene06116:CDS
ATGATAGGAAGGTGTCAAGG+TGG 0.717838 4.2:-3961527 None:intergenic
TGCTCAGATAGATCTTGACG+TGG 0.724663 4.2:+3956815 MS.gene06116:CDS
GTTGCGTGGCTACTTGACGA+AGG 0.727374 4.2:+3959431 MS.gene06116:CDS
TATATGTACAGTAATCACCA+AGG 0.733738 4.2:+3956478 MS.gene06116:CDS
GGTCTTCACAGCCATAACCG+GGG 0.753301 4.2:-3954979 None:intergenic
TGATATGGGAATGACTTACG+AGG 0.757080 4.2:+3960356 MS.gene06116:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr4.2 gene 3954839 3962269 3954839 ID=MS.gene06116
chr4.2 mRNA 3954839 3962269 3954839 ID=MS.gene06116.t1;Parent=MS.gene06116
chr4.2 exon 3954839 3955032 3954839 ID=MS.gene06116.t1.exon1;Parent=MS.gene06116.t1
chr4.2 CDS 3954839 3955032 3954839 ID=cds.MS.gene06116.t1;Parent=MS.gene06116.t1
chr4.2 exon 3955125 3955430 3955125 ID=MS.gene06116.t1.exon2;Parent=MS.gene06116.t1
chr4.2 CDS 3955125 3955430 3955125 ID=cds.MS.gene06116.t1;Parent=MS.gene06116.t1
chr4.2 exon 3956303 3956526 3956303 ID=MS.gene06116.t1.exon3;Parent=MS.gene06116.t1
chr4.2 CDS 3956303 3956526 3956303 ID=cds.MS.gene06116.t1;Parent=MS.gene06116.t1
chr4.2 exon 3956733 3956836 3956733 ID=MS.gene06116.t1.exon4;Parent=MS.gene06116.t1
chr4.2 CDS 3956733 3956836 3956733 ID=cds.MS.gene06116.t1;Parent=MS.gene06116.t1
chr4.2 exon 3956934 3957068 3956934 ID=MS.gene06116.t1.exon5;Parent=MS.gene06116.t1
chr4.2 CDS 3956934 3957068 3956934 ID=cds.MS.gene06116.t1;Parent=MS.gene06116.t1
chr4.2 exon 3957452 3957620 3957452 ID=MS.gene06116.t1.exon6;Parent=MS.gene06116.t1
chr4.2 CDS 3957452 3957620 3957452 ID=cds.MS.gene06116.t1;Parent=MS.gene06116.t1
chr4.2 exon 3958134 3958269 3958134 ID=MS.gene06116.t1.exon7;Parent=MS.gene06116.t1
chr4.2 CDS 3958134 3958269 3958134 ID=cds.MS.gene06116.t1;Parent=MS.gene06116.t1
chr4.2 exon 3958631 3958769 3958631 ID=MS.gene06116.t1.exon8;Parent=MS.gene06116.t1
chr4.2 CDS 3958631 3958769 3958631 ID=cds.MS.gene06116.t1;Parent=MS.gene06116.t1
chr4.2 exon 3959276 3959452 3959276 ID=MS.gene06116.t1.exon9;Parent=MS.gene06116.t1
chr4.2 CDS 3959276 3959452 3959276 ID=cds.MS.gene06116.t1;Parent=MS.gene06116.t1
chr4.2 exon 3959725 3959892 3959725 ID=MS.gene06116.t1.exon10;Parent=MS.gene06116.t1
chr4.2 CDS 3959725 3959892 3959725 ID=cds.MS.gene06116.t1;Parent=MS.gene06116.t1
chr4.2 exon 3960345 3960440 3960345 ID=MS.gene06116.t1.exon11;Parent=MS.gene06116.t1
chr4.2 CDS 3960345 3960440 3960345 ID=cds.MS.gene06116.t1;Parent=MS.gene06116.t1
chr4.2 exon 3961427 3961555 3961427 ID=MS.gene06116.t1.exon12;Parent=MS.gene06116.t1
chr4.2 CDS 3961427 3961555 3961427 ID=cds.MS.gene06116.t1;Parent=MS.gene06116.t1
chr4.2 exon 3961704 3961893 3961704 ID=MS.gene06116.t1.exon13;Parent=MS.gene06116.t1
chr4.2 CDS 3961704 3961893 3961704 ID=cds.MS.gene06116.t1;Parent=MS.gene06116.t1
chr4.2 exon 3962241 3962269 3962241 ID=MS.gene06116.t1.exon14;Parent=MS.gene06116.t1
chr4.2 CDS 3962241 3962269 3962241 ID=cds.MS.gene06116.t1;Parent=MS.gene06116.t1
Gene Sequence

>MS.gene06116

ATGAGGCTCTTGAAGGTAGCTACTTGCAATCTCAACCAATGGGCTATGGAATTCGATTCCAATCTTCTCCAAATCAAAGACTCCATCTCCAAATCCAAACAAGCCGGCGCCGTCATCCGTCTTGGACCCGAACTCGAAATCCCCGGTTATGGCTGTGAAGACCACTTCTTAGAACTCGACACCATTAACCATTCGTAATAACTCTCTCTTTTTCTTCTTTTTCACACATGTCAAAGAGTGTTTTTCTGTTCAGTTTTTGTCACTGAAATTGGTTTTGTTGCTGCAGATGGGAATGTTTGAAAGAAATATTGATTGGTGATTGGACTGATAACATAGTGTGTAGTATTGGAATGCCTATTATCAAAGGTTCCGAGAGATACAATTGTCAGGTTTTGTGTTTCAATCGAAAGATTATTATGATACGACCCAAGATGTGGCTTGCAAATGATGGTAATTACAGAGAACTTCGATGGTTTACTGCTTGGAAACAAAGGGACCAACTTGATGATTTTCAACTTCCTCCTCATGTTTCTGAGGCATTGGGACAAAAATCAGTTCCATTTGGTTATGGTTTTGTTAAGTTTCAAGACACGTAAGTGCCATATTCACACGTTATTTTTGTTTCACTTAACATAGTGTTTGCTATGATGCACTTACACCGACACGAACACGGGTCATGACACCGACATGTAGACACCAGTAATGATTTGAGAAATTACAAGTGTCAATGTCATTTGGTGTCCGATGCTCAAATTTTCCTTCAACGGAAGTGTTGGTGATATGTAGTGTTTGGGTTGATGCATAGGTTAAAGAGCCGCACTAACTTTTTTAGTTTAAGAGCACATGTTAAGGAATCTACAAACAGTAGTATGTCTTGAAAAAAAAAAACATTTTTTAACTTTTTGAGAAATAGAATGCACAATTTCCAATACAAAATTTCTATAACAAGTGTCATAAGGGTACATGTTAGCATTTCCCTAGGTTAAAATATGACACAATAGTTATATGTTTTGTGCATGTTGAAAGTAGAACATGCCATGACATAATGTAAAAAGAAATGGTACACTGGTTGTAGGTGAAACCAGAGATAGCAAAACAAAATACGCTGTCCTGTTGTACCGTTCTGTTCTCCATCAGACACTAATGTTACGTCCTTACTTTCCCTGGCTCTCTTTTTCTATTATTATTGTTTGACGGTGTCGACGATGTGTTTACTCGGCTGAGTTGAATTATTTGTTGGTCACTGATACCTTTTACGCTCATGCATTCTAAAGTTATATGCATCAGCATTGCATCCATGCGGCAATCTTGTGATTGACATATCTACATATTCTTTCATACACCTAAGTAGTGTGTTCAAACTATTGTGTGTGTATGTGTTTCATTTATGTTTTTGGGGCTTTCCAACTTATACTCAGATGTTTATTATTATGTGCTTAACATAAAGCATTTTCCCATTCTTAGAGCTATTGCAGTGGAAGTTTGTGAAGAACTTTTTACTCCATCTCCCCCTCATGCTGAGCTTGCATTAAATGGGGTTGAAGTGTTTATGAATGCAAGCGGAAGTCACCATCAACTTAGAAAGCTTGATGTTCGTCTTCGTGCTTTTATAGGTGCTACTCATACTCGTGGAGGTGTCTATATGTACAGTAATCACCAAGGCTGTGATGGTGGTCGCCTTTACTATGGTAGGAAAATATTTCCCTTAACAGAATTCCGTTCGTCTTTTTTCACATTTAATATCCATTGTGTGTTTGGGAGGGCGAGGTAAATTCAACATTCAGGAAATCCGTATAAGGATATTTATTTTCCATTTAGATTGTTTAAATGTCAATTATATAGGATTTTTTCATTTGTCTAAAATTTATCTTGTTTTTCATTTCATTTGTAACAGATGGATGTTCCAGTGTTGTGGTTAATGGTGATGTTGTTGCTCAAGGTTCCCAATTTTCTTTAAATGATGTTGAGGTTGTGGTTGCTCAGATAGATCTTGACGTGGTATGCATTAGTTTCCATATTTAAATGCTTGCAATGCAAAGTCATTTTGACCATAAACATTAAAGGATTTACATCAGATTGGTTCCTTTACTGGTAGGTTGCAAGCCTTAGAGGATCTTTAAGTAGCTTCCAAGAGCAAGCAAGTTGTAAAGTCAAGGTTCCTTCAGTAGATGTACCATATAATCTTTGTCTTCCTTTTGACCTTAAAATACGCCTTTCTGTTCCTCTTAAGGTTAGTTTATTGTCATTTTGAGTTGCAATTTTCAGTTAGCTAAACATTATGAGCTTTAAAGGTGCACCTATGATGTCGCCATGAATACCGTATTCCCTTAAAAGAGTATTTGGCTCCAAGGTTTTATTTTTCACCAAAAGTTTTAATCTTTATATGTGCTTGTTTGGATTTGAGTTAAAAATCACATCACGTTGAAATACCGCATCCAAAGCAGTGAAATTGTGAAAATTTAGAAGCTGCTATTTGGAGCTTTCACGTTGCCGTGACTTTTTGTCGCACATTTGATCAAATCCACACAAGCACTTTATTGATTTAATAATGTTACTGCTGAAATTAATCAGGCCTCCAAGTTACTAAGTTGAAACATGATTATATATTTATAGATAAAATATCACTCTCCTGAGGAGGAAATAGCATTTGGACCTGGTTGCTGGTTATGGGATTATTTACGAAGAAGTGGAGCATCTGGCTTTCTGCTCCCTCTTTCTGGTGGAGCAGACAGTTCCTCTGTTGCTGCGATTGTTGGATGCATGTGCCAGATGGTCGTGAAAGGTAAGTTCAAATGCAATGACAACTGCAGTTAGATTGGATTGTGGAATGTGAATTACCTTTCTTATCAACTTGCGACAGTATTTTAAAGCTACATTATTGTGTATACTATTATAGGACTGCTTATTTAGTAATAAACAAATGATTCACGCGACCACTATAAAGATCTCAAAGAAGATTAGTTAAGAGGTCACACATATAATTGACCGACAGCTGAATTAATTGGAGAAACAGACCTGAATGTTTATATTTCCTTTCTCAAAAGTCTTGCAAAATTGCTTGAATATAGAGCATAGTGTCCTTTTAGTAGTTCACCGTGCTTTACTTCTTACAGAAAAACTGAGTTGTGTAATCATGGTCTATAGTTAAAATGATACTGACTATTTACCTCTCCTTTTCTCTTTCATTTACAATTTTTGAACGTGGCAGAGGTGAAATAAACAACATTATTTGACCTTACAAATCCGAACCTTGTAGTTTGGATATCATTAACTAGTGATTCATATTTTCCTTCAGAAATTGCAAATGGGGATGAACAAGTTAAAGCTGATGCAATACGGATTGGAAACTATATAGATGGACAGTATCCTACAGACAGCACAGAATTTGCCAAAAGAGTATTTTATACTGTGTTTATGGGATCTGAAAACAGGTAAGTGATAATTTTCATGTTCTAGTGTTTTACAATCATTGGCTGTGTCTATCTAAGTTTCCATATCGGCTATATTCCTTCAATACTTCATCAATGATATTGCAGATGTATGACCGTTAATATTTTTTCAATCCAATGTGTTTTAATGGGGTTGAGACTTGATAAGGTGCTTTTCATAACTTTAAACAATTAGAATAGTAATTCTATTCTACTGTACAGTGTAATACCTGAAGAAATCCTTTTATTTTGTCGATCAGTTTAAGTTCAAACAGAAGAACACATTCTAATATGTTATTTGAAATCAACTGGAAAAAAAACCCTCTTTAGATGTTATGGTGCACTAACAGTATTCACGTTGCAGTTCGGAAATGACAAGGTCGCGAGCCAAGGTACTGGCAGAGGAAATTGGTTCATGGCACCTTGATGTTAGCATTGATGGAGTCATATCTGCCCTTTTGTCTTTGTTTCAAACACTTACGGGAAAGCGACCACGCTACAAGGTGACTGAATTATGGACTAGTGCATTATTTCAATCATAAATACAATTCCAGAACTGTGTAGTCTATGATGTGGTTGCTTGTCACACTTGATTTTTCCACCGGAGTATGTTGATATTAATGAAAAATGGTATTTTGATTTTAAAACAAGTCAACATAGAACTCCACCTCAGGACCTCTGATAGGACACCGAATGAGAAAGTGGGCTCAGCGGGACAGTTAGCACATCAGTTGCCCAAACCAAAAGTCTGTGGATATTTGATGTTAAAAGAAATACTGAAGGGCATGATGGGAATATCACATGACTTATCCTATTGTATTTTCCTTTGTGTTTATGAAATAACAGTCTTTATTTTCCATTATTGCTCTGTTTTCTTCTATAAACTGTTTCTGTAATCCAGATTCGTATCAATGCCGGACTAAGATTAAGTTCATGTTATATTTCTAATGATATTTTTTGTCATCTTGTAGCCTCAAATGATATTTTTTGTATGATTTTGTTTATACAGGTAGATGGTGGATCTAATGTTGAGAATTTAAGCTTGCAAAACATTCAAGCTCGAATCAGAATGGTGCTAGCTTTCATGTTAGCATCACTCTTGCCTTGGGTTCACAACAAACCTGGGTTTTATCTTGTCTTGGGGAGCTCCAACGTGGATGAAGGGTTGCGTGGCTACTTGACGAAGGTATCTCAATACATCGTTAGATTACACGTTTTTATAGGGGACCTATAGTTGAACTTATAGGGTACCTATAAGTTCAAAACATGTCGCTTTATTTTCACTTTGTTTTTTGGCTGAATCTATGGAAACAAGAAACAAATAAAAAATAAGATGATATTTTTGTAATTATTAGTCAAACATAAAATAGTAACATAAATTTTGTCTTCAAATGGCCACTTAGTTTCTCATTATTGTGGTCTGCTACACTCTAGTTATCAAAGTTCATCTTCTTACAGTATGATTGCAGCTCAGCGGATATAAATCCCATTGGCAGTATAAGTAAGCAGGATCTTCGGTCATTCCTGCGATGGGCAGCCAGCCATCTTGGTTACTCATCTTTGGCAGATATTGAAGCAGCTCCACCCACAGCTGAACTGGAGCCTATACGTTCTAACTACAGTCAGGTAGTGTTATGTTCTGTTACACTTTTCAGTACTCACCGGTCTTGAAACATCTCAATGAATCCTTTCATTTGCATATGTGTTGGCATACTGTATTTGGGACGTTATTTTTGTCTATGCTACAATGTTAGATGGAAGACAAGAGACAATTCAACAGAAGCAAGAGCTTAATTATCAGCTCACAATAACCTTTTAAAAATGTCTTGACTTCTATCTATCCAGACATTTTCTGGCAATCTGTTATAAGGGTGATGGTTTTGGGTGAAGTCTTGGAACTAGTTTACTCATTTGTTCTCCCTTTAACAGTATCTATTAGTTTTTGGTTATTGTGTATTTGACTTTTCAGTGGCCTTGTTCTCCTGGGTATTTTTTATTTTTTTGTATCCATTAGTAATATATTTTTGATCAATTTTTAAAATTATAATTGAATACCTCACTCGTTCTTAATTGAGCAGCTTGATGAAGTTGATATGGGAATGACTTACGAGGAACTATCTGTTTATGGAAGACTACGCAAAATTTTCCGTTGTGGTCCAGTTTCCATGTTCCAGGTATATCTCATGTTTGTCCATCCTATCTATTGACTTCTTTAACCTTTCCCTTGATTTTTGTCGTTTTTGTATTTTTCATATTAAAATGGTTGAAGGAACAGTGAAAGCATGTGGTAATCTTATGCATGACCATCTCACAATATCAATCTTTGTTAGGCCAGATACAATGAAGAATGATGCAAAGCCGAGAAAGATAAACCCCATAGGCTATAAGCCTATAACTAACTTACCTGCATGTCATTTGACAGGTCGATGAAATTGGTTTTATTGTTCGCTGGTCCTGCAAGGCCAAAATAAGTTCAATATCAGTAACTTATTGACTCATTTTTTCTGTTGGCAAGAAACTAGAGTAAACTGTCATTTTGCTCTTTAAATTTGTTAGTCACTGTCACAGTAGTCTTTGGACGTATCAACATTACAAAGGCATACCAAATGTGTCTTTTGTTAATCATTTTGGTCCTCGAATATGTCTTACGTTAATCAATTTGGTCCATAATATTACTAGCAAAAGAGACACTTAGGGATGTGTTTGTAATTTCGCACCTACAACTGTCTGTAAAAACACAATACCAGATCTTGTCTATATATTGAACAGACGGACATATCAAACATCCAGTTACAAAACTTTACCTGCTTTTTTGAAAATAAAAGAGGAGTTCCTTGTGTGAGCTTTTATTGCAAAAGGCTATTTATCTGAAAAATGGTTAGAAGTTAGCATTTTTTTTCTTTAGGACGAGAGCTAATGAAATAACAAAAGAATTCACATTTTTTATGCTAAGTATCACTAGAAGAAACTCCTTACCATGTATCCTAAGTCACATTAGATTGATTTTAGAACTGCCATGTTTTCAATCGATACGGAGAGCTCTACTTGGTAGAAGATTTTTGCATCTACTAGTTAGCAGTCTCTGTAGAAGCTTGTAATTTAAGGCTGTCCATCTTTAAGTTCAGTCCTAACCTTTTTTTTTTTTAATTTGCCATCTCAGAATCTATGTTACAGATGGGGTGCAAAATTGACTCCATCACAAGTGGCTGAAAAAGTAAAACACTTCTTCAAGTATTATTCGATAAATCGGCACAAAATGACCACCTTGACACCTTCCTATCATGCCGAGGTATGTAGTTCTTATGATTTAAAGTCAGGGTTGAATTGCTAGGTAGCTATTCACGCTCCTAAAGATTTTGGCCGGTTCTCTCTCTCTCTGTTTTTTTTTTTTTTTTTTTTGACTGATGAAAATGCACAATCTTTCACTCAACTTGCAGAGTTATTCACCAGAGGATAATAGGTTTGATCTTCGCCAATTTCTTTATAATGCAAGATGGCCGTATCAATTTCGGAAAATCGATGAACTCGTACATGAGCTGGATGTCAAAAATGTTCAAGAATCAGCAAACCATGAGTCAGTGGCAGCTTCATTAGATGGTGTTGGTGGAATGGGAGTTGCTGCCGCAGGTTCAGGCAATCCAAATGTCGGAATCTAATTGAAATTAACCTCCCCTAATAAAACAAAATAAAGTAAATTATAGATTTGCATGTGCAAGACTGCAAATCTGGCCCAAACAAATATATAGATTCCATATTTTTATAGCACACTATGTGAATAATGAAACTCCCTTTCATCCCATGTGTAGTGTAAAAACATTTTTAAATTATCATTGAGTGTTTTGATTTATTACAAAGAGAAAGATTTAGATGACGATGCAATATGAAAGGAAAAGTTCAGATTTGACAACAACTATAACAAACTGAACTTGTTGGTTGTGATTCTTTAGTCTTATGCTAAAAAATTTATGGTGAAGGATTCTCAACTGAGTTGATTCTATCGTAA
Protein sequence

>MS.gene06116.t1

MRLLKVATCNLNQWAMEFDSNLLQIKDSISKSKQAGAVIRLGPELEIPGYGCEDHFLELDTINHSWECLKEILIGDWTDNIVCSIGMPIIKGSERYNCQVLCFNRKIIMIRPKMWLANDGNYRELRWFTAWKQRDQLDDFQLPPHVSEALGQKSVPFGYGFVKFQDTAIAVEVCEELFTPSPPHAELALNGVEVFMNASGSHHQLRKLDVRLRAFIGATHTRGGVYMYSNHQGCDGGRLYYDGCSSVVVNGDVVAQGSQFSLNDVEVVVAQIDLDVVASLRGSLSSFQEQASCKVKVPSVDVPYNLCLPFDLKIRLSVPLKIKYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQMVVKEIANGDEQVKADAIRIGNYIDGQYPTDSTEFAKRVFYTVFMGSENSSEMTRSRAKVLAEEIGSWHLDVSIDGVISALLSLFQTLTGKRPRYKVDGGSNVENLSLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRSFLRWAASHLGYSSLADIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKIFRCGPVSMFQNLCYRWGAKLTPSQVAEKVKHFFKYYSINRHKMTTLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVHELDVKNVQESANHESVAASLDGVGGMGVAAAGFSTELILS