Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55835.t1 | XP_013447253.1 | 95.2 | 724 | 12 | 1 | 1 | 701 | 1 | 724 | 0.00E+00 | 1396.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55835.t1 | Q9C723 | 79.0 | 706 | 122 | 2 | 1 | 680 | 1 | 706 | 0.0e+00 | 1171.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55835.t1 | A0A072U616 | 95.2 | 724 | 12 | 1 | 1 | 701 | 1 | 724 | 0.0e+00 | 1396.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene06116 | MS.gene55835 | 0.93708 | 6.19E-98 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55835.t1 | MTR_8g099885 | 95.166 | 724 | 12 | 1 | 1 | 701 | 1 | 724 | 0.0 | 1424 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55835.t1 | AT1G55090 | 79.037 | 706 | 122 | 2 | 1 | 680 | 1 | 706 | 0.0 | 1193 |
Find 204 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTTTCTGCTCCCTCTTTC+TGG | 0.065747 | 4.3:+4182742 | MS.gene55835:CDS |
| CAACATCATTTAAAGAAAAT+TGG | 0.105248 | 4.3:-4181988 | None:intergenic |
| CATGCTGAGCTTGCATTAAA+TGG | 0.156645 | 4.3:+4181558 | MS.gene55835:CDS |
| TACGAGGAACTATCTGTTTA+TGG | 0.202343 | 4.3:+4185578 | MS.gene55835:CDS |
| TTGGACCTGGTTGCTGGTTA+TGG | 0.219491 | 4.3:+4182692 | MS.gene55835:CDS |
| TTACAGAGCTACTGCGCTTT+TGG | 0.230460 | 4.3:+4191346 | MS.gene55835:intron |
| ATCTTGCATTATAAAGAAAT+TGG | 0.239593 | 4.3:-4186945 | None:intergenic |
| GTTATTCACCAGAGGATAAT+AGG | 0.260783 | 4.3:+4186911 | MS.gene55835:CDS |
| GATGACGGCGCCGGCTTGTT+TGG | 0.281693 | 4.3:-4180140 | None:intergenic |
| TGGTCCAGTTTCCATGTTCC+AGG | 0.285193 | 4.3:+4185625 | MS.gene55835:CDS |
| CCATCTTGGTTACTCATCTT+TGG | 0.286324 | 4.3:+4185014 | MS.gene55835:CDS |
| TATGTCTTTGTTTGTAAGAA+TGG | 0.292896 | 4.3:+4190465 | MS.gene55835:CDS |
| TCCTCTGTTGCTGCGATTGT+TGG | 0.297915 | 4.3:+4182778 | MS.gene55835:CDS |
| CACCTTGATGTTAGCATTGA+TGG | 0.301302 | 4.3:+4183892 | MS.gene55835:CDS |
| TGGACCTGGTTGCTGGTTAT+GGG | 0.301739 | 4.3:+4182693 | MS.gene55835:CDS |
| ACGCCTTTCTGTTCCTCTTA+AGG | 0.304612 | 4.3:+4182253 | MS.gene55835:CDS |
| TTCTATCAGATTGGAATAGA+TGG | 0.308245 | 4.3:+4191416 | MS.gene55835:CDS |
| TGTTCCAGTGTTGTGGTTAA+TGG | 0.316625 | 4.3:+4181944 | MS.gene55835:CDS |
| TCCTCATGTTTCTGAGGCAT+TGG | 0.318545 | 4.3:+4180566 | MS.gene55835:CDS |
| GAGTTATTACGAATGGTTAA+TGG | 0.319596 | 4.3:-4180227 | None:intergenic |
| CAAGATGGCCGTATCAATTT+CGG | 0.328849 | 4.3:+4186962 | MS.gene55835:CDS |
| AAATCAGTTCCATTTGGTTA+TGG | 0.330419 | 4.3:+4180594 | MS.gene55835:CDS |
| GCAGCTTGATGAAGTTGATA+TGG | 0.333483 | 4.3:+4185547 | MS.gene55835:intron |
| TGGAGATGGAGTCTTTGATT+TGG | 0.334425 | 4.3:-4180114 | None:intergenic |
| GTCTTTGATTTGGAGAAGAT+TGG | 0.335730 | 4.3:-4180104 | None:intergenic |
| TGGTAGGTTGCAAGCCTTAG+AGG | 0.338452 | 4.3:+4182134 | MS.gene55835:intron |
| CCACCATGAACGGCTGTTAC+AGG | 0.338827 | 4.3:-4190500 | None:intergenic |
| CATCAAGCTTTCTAAGTTGA+TGG | 0.339716 | 4.3:-4181614 | None:intergenic |
| GGCGCCGGCTTGTTTGGATT+TGG | 0.343154 | 4.3:-4180134 | None:intergenic |
| TCAAGTATTATTCGATAAAT+CGG | 0.347943 | 4.3:+4186700 | MS.gene55835:CDS |
| CTCTCGGAACCTTTGATAAT+AGG | 0.348000 | 4.3:-4180399 | None:intergenic |
| TAGCATTTGGACCTGGTTGC+TGG | 0.357685 | 4.3:+4182686 | MS.gene55835:CDS |
| AGCTCCACCCACAGCTGAAC+TGG | 0.364040 | 4.3:+4185050 | MS.gene55835:CDS |
| CCTTGGGTTCACAACAAACC+TGG | 0.370888 | 4.3:+4184575 | MS.gene55835:CDS |
| ATGCTGAGCTTGCATTAAAT+GGG | 0.371833 | 4.3:+4181559 | MS.gene55835:CDS |
| ATCATTTGCAAGCCACATCT+TGG | 0.378781 | 4.3:-4180472 | None:intergenic |
| TGTTAGCATCACTCTTGCCT+TGG | 0.378857 | 4.3:+4184558 | MS.gene55835:CDS |
| GTGGTCTTCACAGCCATAAC+CGG | 0.383872 | 4.3:-4180188 | None:intergenic |
| TCTTTGTTTCAAACACTTAC+GGG | 0.384485 | 4.3:+4183934 | MS.gene55835:CDS |
| GTCTTTGTTTCAAACACTTA+CGG | 0.384605 | 4.3:+4183933 | MS.gene55835:CDS |
| GACAATAAACTAACCTTAAG+AGG | 0.386044 | 4.3:-4182266 | None:intergenic |
| GTTAGCATCACTCTTGCCTT+GGG | 0.387419 | 4.3:+4184559 | MS.gene55835:CDS |
| AAGAAATATTGATTGGTGAT+TGG | 0.389174 | 4.3:+4180346 | MS.gene55835:CDS |
| AACATCATTTAAAGAAAATT+GGG | 0.390775 | 4.3:-4181987 | None:intergenic |
| TTACGAAGAAGTGGAGCATC+TGG | 0.393568 | 4.3:+4182721 | MS.gene55835:CDS |
| ATGTCTTTGTTTGTAAGAAT+GGG | 0.396655 | 4.3:+4190466 | MS.gene55835:CDS |
| CCTCATGTTTCTGAGGCATT+GGG | 0.396761 | 4.3:+4180567 | MS.gene55835:CDS |
| ATAACCGGGGATTTCGAGTT+CGG | 0.397139 | 4.3:-4180173 | None:intergenic |
| CGGATTGGAAACTATATAGA+TGG | 0.397855 | 4.3:+4183381 | MS.gene55835:CDS |
| TTTCCTTCAGAAATTGCAAA+TGG | 0.399802 | 4.3:+4183330 | MS.gene55835:intron |
| ACTACATACCTCGGCATGAT+AGG | 0.403171 | 4.3:-4186748 | None:intergenic |
| AAAGGAAGACAAAGACTATA+TGG | 0.406257 | 4.3:-4182218 | None:intergenic |
| CCTGAGGAGGAAATAGCATT+TGG | 0.407961 | 4.3:+4182673 | MS.gene55835:CDS |
| CTTTACAACTTGCTTGCTCT+TGG | 0.410098 | 4.3:-4182172 | None:intergenic |
| AGCTACTTAAAGATCCTCTA+AGG | 0.411025 | 4.3:-4182148 | None:intergenic |
| AAGGTACTGGCAGAGGAAAT+TGG | 0.413079 | 4.3:+4183862 | MS.gene55835:CDS |
| TATACCTGGAACATGGAAAC+TGG | 0.415696 | 4.3:-4185629 | None:intergenic |
| AACTTCGATGGTTTACTGCT+TGG | 0.416004 | 4.3:+4180508 | MS.gene55835:CDS |
| TGTTGGACAAACCTTTCCTA+TGG | 0.423047 | 4.3:-4190399 | None:intergenic |
| TTTAAATGATGTTGAGGTTG+TGG | 0.424124 | 4.3:+4181997 | MS.gene55835:CDS |
| CGATGGGCAGCCAGCCATCT+TGG | 0.433435 | 4.3:+4185000 | MS.gene55835:CDS |
| GCTTGCATGTTCTATCAGAT+TGG | 0.434379 | 4.3:+4191407 | MS.gene55835:CDS |
| TTAGATGGTGTTGGTGGAAT+GGG | 0.436891 | 4.3:+4187063 | MS.gene55835:CDS |
| GATGGTGGTCGCCTTTACTA+TGG | 0.445130 | 4.3:+4181711 | MS.gene55835:CDS |
| GAACTCGAAATCCCCGGTTA+TGG | 0.445759 | 4.3:+4180175 | MS.gene55835:CDS |
| ACTTACCTTTCACGACCATC+TGG | 0.449690 | 4.3:-4182810 | None:intergenic |
| TAACCGGGGATTTCGAGTTC+GGG | 0.455865 | 4.3:-4180172 | None:intergenic |
| TTCCTTCAGAAATTGCAAAT+GGG | 0.460972 | 4.3:+4183331 | MS.gene55835:intron |
| TTCCGAGAGATACAATTGTC+AGG | 0.462968 | 4.3:+4180413 | MS.gene55835:CDS |
| CAATCTCAACCAATGGGCTA+TGG | 0.470887 | 4.3:+4180072 | MS.gene55835:CDS |
| TCAGTGGCAGCTTCATTAGA+TGG | 0.472410 | 4.3:+4187048 | MS.gene55835:CDS |
| GTGTTTGAAACAAAGACAAA+AGG | 0.472972 | 4.3:-4183927 | None:intergenic |
| TCATTTGCAAGCCACATCTT+GGG | 0.476765 | 4.3:-4180471 | None:intergenic |
| TGACCTGTAACAGCCGTTCA+TGG | 0.477391 | 4.3:+4190497 | MS.gene55835:CDS |
| GCCGGCGCCGTCATCCGTCT+TGG | 0.477437 | 4.3:+4180148 | MS.gene55835:CDS |
| CGATGAACTCGTACATGAGC+TGG | 0.481111 | 4.3:+4186990 | MS.gene55835:CDS |
| CTCAGAATCTATGTTACAGA+TGG | 0.482926 | 4.3:+4186628 | MS.gene55835:intron |
| GGCTTGTTTGGATTTGGAGA+TGG | 0.485111 | 4.3:-4180128 | None:intergenic |
| GATGGCTGGCTGCCCATCGC+AGG | 0.487074 | 4.3:-4184996 | None:intergenic |
| TGTTTGAAAGAAATATTGAT+TGG | 0.487416 | 4.3:+4180339 | MS.gene55835:CDS |
| GGGAGCTCCAACGTGGATGA+AGG | 0.489079 | 4.3:+4184614 | MS.gene55835:CDS |
| GATAACATAGTGTGTAGTAT+TGG | 0.489547 | 4.3:+4180372 | MS.gene55835:CDS |
| CCAAATGCTATTTCCTCCTC+AGG | 0.490563 | 4.3:-4182673 | None:intergenic |
| ATCTTCGGTCATTCCTGCGA+TGG | 0.492236 | 4.3:+4184983 | MS.gene55835:CDS |
| AATGGTGATGTTGTTGCTCA+AGG | 0.499320 | 4.3:+4181962 | MS.gene55835:CDS |
| TGGCAGAGGAAATTGGTTCA+TGG | 0.503133 | 4.3:+4183869 | MS.gene55835:CDS |
| TTAACAAAACCATAACCAAA+TGG | 0.503166 | 4.3:-4180603 | None:intergenic |
| ACTTCCTCCTCATGTTTCTG+AGG | 0.509841 | 4.3:+4180560 | MS.gene55835:CDS |
| CTGCTTACTTATACTGCCAA+TGG | 0.510061 | 4.3:-4184959 | None:intergenic |
| GTATAAGTAAGCAGGATCTT+CGG | 0.511899 | 4.3:+4184968 | MS.gene55835:CDS |
| ATTAGATGGTGTTGGTGGAA+TGG | 0.513323 | 4.3:+4187062 | MS.gene55835:CDS |
| AATCACGATGAGGCTCTTGA+AGG | 0.517734 | 4.3:+4180039 | None:intergenic |
| CATTGGCAGTATAAGTAAGC+AGG | 0.517825 | 4.3:+4184960 | MS.gene55835:CDS |
| TCCAAGACGGATGACGGCGC+CGG | 0.522702 | 4.3:-4180149 | None:intergenic |
| AAAGCTGATGCAATACGGAT+TGG | 0.522800 | 4.3:+4183366 | MS.gene55835:CDS |
| GGCGACCACCATCACAGCCT+TGG | 0.524751 | 4.3:-4181701 | None:intergenic |
| AATTTCTTTATAATGCAAGA+TGG | 0.525324 | 4.3:+4186947 | MS.gene55835:CDS |
| GTTTACTGCTTGGAAACAAA+GGG | 0.526848 | 4.3:+4180518 | MS.gene55835:CDS |
| AAGGTCGCGAGCCAAGGTAC+TGG | 0.527618 | 4.3:+4183849 | MS.gene55835:CDS |
| TACTTGCAATCTCAACCAAT+GGG | 0.527623 | 4.3:+4180066 | MS.gene55835:CDS |
| CTTGGGTTCACAACAAACCT+GGG | 0.529526 | 4.3:+4184576 | MS.gene55835:CDS |
| TCCTTCAGAAATTGCAAATG+GGG | 0.529905 | 4.3:+4183332 | MS.gene55835:intron |
| TGTTTGAAACAAAGACAAAA+GGG | 0.530094 | 4.3:-4183926 | None:intergenic |
| AACCTGACAATTGTATCTCT+CGG | 0.530713 | 4.3:-4180415 | None:intergenic |
| CTGTCTGCTCCACCAGAAAG+AGG | 0.531787 | 4.3:-4182754 | None:intergenic |
| TGGGATTATTTACGAAGAAG+TGG | 0.532803 | 4.3:+4182712 | MS.gene55835:CDS |
| TGGTCTTCACAGCCATAACC+GGG | 0.535392 | 4.3:-4180187 | None:intergenic |
| AAGTTAAAGCTGATGCAATA+CGG | 0.540512 | 4.3:+4183361 | MS.gene55835:CDS |
| TGCTTACTTATACTGCCAAT+GGG | 0.542445 | 4.3:-4184958 | None:intergenic |
| AATTTCCTCTGCCAGTACCT+TGG | 0.542921 | 4.3:-4183860 | None:intergenic |
| GCAAGCAAGTTGTAAAGTCA+AGG | 0.543230 | 4.3:+4182178 | MS.gene55835:CDS |
| ATTGGAATGCCTATTATCAA+AGG | 0.545628 | 4.3:+4180390 | MS.gene55835:CDS |
| TTTCTGCTCCCTCTTTCTGG+TGG | 0.545789 | 4.3:+4182745 | MS.gene55835:CDS |
| ATCTGATAGAACATGCAAGC+AGG | 0.546979 | 4.3:-4191404 | None:intergenic |
| CAGCTTGATGAAGTTGATAT+GGG | 0.547546 | 4.3:+4185548 | MS.gene55835:intron |
| AGATCAAACCTATTATCCTC+TGG | 0.548297 | 4.3:-4186919 | None:intergenic |
| GGTTTACTGCTTGGAAACAA+AGG | 0.548451 | 4.3:+4180517 | MS.gene55835:CDS |
| GGCTCCAGTTCAGCTGTGGG+TGG | 0.548598 | 4.3:-4185054 | None:intergenic |
| CTCCATCAATGCTAACATCA+AGG | 0.548950 | 4.3:-4183894 | None:intergenic |
| CTACTTGCAATCTCAACCAA+TGG | 0.551398 | 4.3:+4180065 | MS.gene55835:CDS |
| GTTGGACAAACCTTTCCTAT+GGG | 0.551765 | 4.3:-4190398 | None:intergenic |
| TCAGAATCTATGTTACAGAT+GGG | 0.553971 | 4.3:+4186629 | MS.gene55835:intron |
| GCGAGCCAAGGTACTGGCAG+AGG | 0.554709 | 4.3:+4183855 | MS.gene55835:CDS |
| GCAGCTTCATTAGATGGTGT+TGG | 0.556086 | 4.3:+4187054 | MS.gene55835:CDS |
| TGACTGTAGTTAGAACGTAT+AGG | 0.558038 | 4.3:-4185075 | None:intergenic |
| GGGAAAGCGACCACGCTACA+AGG | 0.558835 | 4.3:+4183954 | MS.gene55835:CDS |
| AATCGAATTCCATAGCCCAT+TGG | 0.559414 | 4.3:-4180081 | None:intergenic |
| GATCTCACCGCCACCATGAA+CGG | 0.561234 | 4.3:-4190510 | None:intergenic |
| GAAGTTGAAAATCATCAAGT+TGG | 0.562415 | 4.3:-4180542 | None:intergenic |
| TTCGGGTCCAAGACGGATGA+CGG | 0.562754 | 4.3:-4180155 | None:intergenic |
| GTAATTACAGAGAACTTCGA+TGG | 0.562942 | 4.3:+4180496 | MS.gene55835:CDS |
| AGTAATCACCAAGGCTGTGA+TGG | 0.563160 | 4.3:+4181693 | MS.gene55835:CDS |
| GCTTCATTAGATGGTGTTGG+TGG | 0.563347 | 4.3:+4187057 | MS.gene55835:CDS |
| TATACGTTCTAACTACAGTC+AGG | 0.563485 | 4.3:+4185077 | MS.gene55835:CDS |
| ATCTCCAAATCCAAACAAGC+CGG | 0.565116 | 4.3:+4180130 | MS.gene55835:CDS |
| TATAGGCTCCAGTTCAGCTG+TGG | 0.566047 | 4.3:-4185058 | None:intergenic |
| CCAGGTTTGTTGTGAACCCA+AGG | 0.567416 | 4.3:-4184575 | None:intergenic |
| TCAATTCATTCCCATAGGAA+AGG | 0.569580 | 4.3:+4190388 | MS.gene55835:CDS |
| CATGAGATATACCTGGAACA+TGG | 0.570810 | 4.3:-4185636 | None:intergenic |
| TCTTCGGTCATTCCTGCGAT+GGG | 0.572859 | 4.3:+4184984 | MS.gene55835:CDS |
| AATGACAAGGTCGCGAGCCA+AGG | 0.572991 | 4.3:+4183843 | MS.gene55835:CDS |
| ATGAAGCTGCCACTGACTCA+TGG | 0.573520 | 4.3:-4187041 | None:intergenic |
| AGATGAGTAACCAAGATGGC+TGG | 0.577528 | 4.3:-4185010 | None:intergenic |
| GTAACAGCCGTTCATGGTGG+CGG | 0.578337 | 4.3:+4190503 | MS.gene55835:CDS |
| TTGTTTATACAGGTAGATGG+TGG | 0.580190 | 4.3:+4184470 | MS.gene55835:intron |
| TTTCGAGTTCGGGTCCAAGA+CGG | 0.582536 | 4.3:-4180162 | None:intergenic |
| ATCACCATTAACCACAACAC+TGG | 0.583409 | 4.3:-4181948 | None:intergenic |
| CATACCTCGGCATGATAGGA+AGG | 0.583769 | 4.3:-4186744 | None:intergenic |
| GGAATGGGAGTTGCTGCCGC+AGG | 0.585359 | 4.3:+4187078 | MS.gene55835:CDS |
| CATTCAAGCTCGAATCAGAA+TGG | 0.587686 | 4.3:+4184523 | MS.gene55835:CDS |
| ATAGGCTCCAGTTCAGCTGT+GGG | 0.591935 | 4.3:-4185057 | None:intergenic |
| AAGATGTGGCTTGCAAATGA+TGG | 0.599672 | 4.3:+4180474 | MS.gene55835:CDS |
| CTATATGGTACATCTACTGA+AGG | 0.601918 | 4.3:-4182203 | None:intergenic |
| TAATGCAAGCTCAGCATGAG+GGG | 0.602155 | 4.3:-4181553 | None:intergenic |
| TGGTGTCGAGTTCTAAGAAG+TGG | 0.603974 | 4.3:-4180207 | None:intergenic |
| TAATCCCATAACCAGCAACC+AGG | 0.604169 | 4.3:-4182697 | None:intergenic |
| AGATGGATGTTCCAGTGTTG+TGG | 0.609611 | 4.3:+4181937 | MS.gene55835:intron |
| TGTCTGCTCCACCAGAAAGA+GGG | 0.609748 | 4.3:-4182753 | None:intergenic |
| TTTAATGCAAGCTCAGCATG+AGG | 0.609788 | 4.3:-4181555 | None:intergenic |
| GGAGCTCCAACGTGGATGAA+GGG | 0.610939 | 4.3:+4184615 | MS.gene55835:CDS |
| AAAATATCACTCTCCTGAGG+AGG | 0.616399 | 4.3:+4182660 | MS.gene55835:CDS |
| GCTGTTCAATTCATTCCCAT+AGG | 0.617992 | 4.3:+4190383 | MS.gene55835:CDS |
| TTATGATACGACCCAAGATG+TGG | 0.618671 | 4.3:+4180460 | MS.gene55835:CDS |
| TCAGCGGATATAAATCCCAT+TGG | 0.619764 | 4.3:+4184943 | MS.gene55835:CDS |
| GAGGAAATAGCATTTGGACC+TGG | 0.620903 | 4.3:+4182679 | MS.gene55835:CDS |
| TGTTGGATGCATGTGCCAGA+TGG | 0.622175 | 4.3:+4182795 | MS.gene55835:CDS |
| TAACCTTAAGAGGAACAGAA+AGG | 0.625303 | 4.3:-4182256 | None:intergenic |
| ATCAGCAAACCATGAGTCAG+TGG | 0.626159 | 4.3:+4187032 | MS.gene55835:CDS |
| TTAATGCAAGCTCAGCATGA+GGG | 0.627773 | 4.3:-4181554 | None:intergenic |
| AATCACCAAGGCTGTGATGG+TGG | 0.627776 | 4.3:+4181696 | MS.gene55835:CDS |
| ACGCAACCCTTCATCCACGT+TGG | 0.629155 | 4.3:-4184621 | None:intergenic |
| AAAATTGACTCCATCACAAG+TGG | 0.630195 | 4.3:+4186656 | MS.gene55835:CDS |
| GAAGTGTTTATGAATGCAAG+CGG | 0.632138 | 4.3:+4181585 | MS.gene55835:CDS |
| ATAGGTGCTACTCATACTCG+TGG | 0.632910 | 4.3:+4181654 | MS.gene55835:CDS |
| CATTCTTAGAGCTATTGCAG+TGG | 0.633093 | 4.3:+4181500 | MS.gene55835:intron |
| TGCTGAGCTTGCATTAAATG+GGG | 0.634241 | 4.3:+4181560 | MS.gene55835:CDS |
| CTTGCAGAGTTATTCACCAG+AGG | 0.641776 | 4.3:+4186903 | MS.gene55835:intron |
| AACGTGGATGAAGGGTTGCG+TGG | 0.643125 | 4.3:+4184623 | MS.gene55835:CDS |
| CCAAAGATGAGTAACCAAGA+TGG | 0.644012 | 4.3:-4185014 | None:intergenic |
| GGACCCGAACTCGAAATCCC+CGG | 0.648427 | 4.3:+4180169 | MS.gene55835:CDS |
| GACACCTTCCTATCATGCCG+AGG | 0.650724 | 4.3:+4186740 | MS.gene55835:CDS |
| CAGAATCTATGTTACAGATG+GGG | 0.651806 | 4.3:+4186630 | MS.gene55835:intron |
| AATTCAGTCACCTTGTAGCG+TGG | 0.653429 | 4.3:-4183964 | None:intergenic |
| TGTCTTGGGGAGCTCCAACG+TGG | 0.667789 | 4.3:+4184607 | MS.gene55835:CDS |
| CCCAATGCCTCAGAAACATG+AGG | 0.670620 | 4.3:-4180567 | None:intergenic |
| AATGCAAGCTCAGCATGAGG+GGG | 0.672892 | 4.3:-4181552 | None:intergenic |
| GGCATGATAGGAAGGTGTCA+AGG | 0.674042 | 4.3:-4186736 | None:intergenic |
| GATAAAATATCACTCTCCTG+AGG | 0.674234 | 4.3:+4182657 | MS.gene55835:intron |
| ATGTGCCAGATGGTCGTGAA+AGG | 0.676922 | 4.3:+4182805 | MS.gene55835:CDS |
| GACAAGAGTGCATAGTCACA+CGG | 0.683244 | 4.3:+4191451 | MS.gene55835:CDS |
| CCTGTAACAGCCGTTCATGG+TGG | 0.686578 | 4.3:+4190500 | MS.gene55835:CDS |
| GTTGCAGTTCGGAAATGACA+AGG | 0.688965 | 4.3:+4183830 | MS.gene55835:intron |
| ACATGGAAACTGGACCACAA+CGG | 0.692287 | 4.3:-4185619 | None:intergenic |
| CCCAAGACAAGATAAAACCC+AGG | 0.699587 | 4.3:-4184593 | None:intergenic |
| ACAGTATGATTGCAGCTCAG+CGG | 0.700171 | 4.3:+4184927 | MS.gene55835:intron |
| TCCAACAATCGCAGCAACAG+AGG | 0.708792 | 4.3:-4182779 | None:intergenic |
| AATGCCTCAGAAACATGAGG+AGG | 0.716948 | 4.3:-4180564 | None:intergenic |
| GGTGCTACTCATACTCGTGG+AGG | 0.717392 | 4.3:+4181657 | MS.gene55835:CDS |
| ATGATAGGAAGGTGTCAAGG+TGG | 0.717838 | 4.3:-4186733 | None:intergenic |
| TGCTCAGATAGATCTTGACG+TGG | 0.724663 | 4.3:+4182021 | MS.gene55835:CDS |
| GTTGCGTGGCTACTTGACGA+AGG | 0.727374 | 4.3:+4184637 | MS.gene55835:CDS |
| TATATGTACAGTAATCACCA+AGG | 0.733738 | 4.3:+4181684 | MS.gene55835:CDS |
| GGTCTTCACAGCCATAACCG+GGG | 0.753301 | 4.3:-4180186 | None:intergenic |
| TGATATGGGAATGACTTACG+AGG | 0.757080 | 4.3:+4185562 | MS.gene55835:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 4180046 | 4191484 | 4180046 | ID=MS.gene55835 |
| chr4.3 | mRNA | 4180046 | 4191484 | 4180046 | ID=MS.gene55835.t1;Parent=MS.gene55835 |
| chr4.3 | exon | 4180046 | 4180239 | 4180046 | ID=MS.gene55835.t1.exon1;Parent=MS.gene55835.t1 |
| chr4.3 | CDS | 4180046 | 4180239 | 4180046 | ID=cds.MS.gene55835.t1;Parent=MS.gene55835.t1 |
| chr4.3 | exon | 4180332 | 4180637 | 4180332 | ID=MS.gene55835.t1.exon2;Parent=MS.gene55835.t1 |
| chr4.3 | CDS | 4180332 | 4180637 | 4180332 | ID=cds.MS.gene55835.t1;Parent=MS.gene55835.t1 |
| chr4.3 | exon | 4181509 | 4181732 | 4181509 | ID=MS.gene55835.t1.exon3;Parent=MS.gene55835.t1 |
| chr4.3 | CDS | 4181509 | 4181732 | 4181509 | ID=cds.MS.gene55835.t1;Parent=MS.gene55835.t1 |
| chr4.3 | exon | 4181939 | 4182042 | 4181939 | ID=MS.gene55835.t1.exon4;Parent=MS.gene55835.t1 |
| chr4.3 | CDS | 4181939 | 4182042 | 4181939 | ID=cds.MS.gene55835.t1;Parent=MS.gene55835.t1 |
| chr4.3 | exon | 4182140 | 4182274 | 4182140 | ID=MS.gene55835.t1.exon5;Parent=MS.gene55835.t1 |
| chr4.3 | CDS | 4182140 | 4182274 | 4182140 | ID=cds.MS.gene55835.t1;Parent=MS.gene55835.t1 |
| chr4.3 | exon | 4182658 | 4182826 | 4182658 | ID=MS.gene55835.t1.exon6;Parent=MS.gene55835.t1 |
| chr4.3 | CDS | 4182658 | 4182826 | 4182658 | ID=cds.MS.gene55835.t1;Parent=MS.gene55835.t1 |
| chr4.3 | exon | 4183340 | 4183406 | 4183340 | ID=MS.gene55835.t1.exon7;Parent=MS.gene55835.t1 |
| chr4.3 | CDS | 4183340 | 4183406 | 4183340 | ID=cds.MS.gene55835.t1;Parent=MS.gene55835.t1 |
| chr4.3 | exon | 4183837 | 4183975 | 4183837 | ID=MS.gene55835.t1.exon8;Parent=MS.gene55835.t1 |
| chr4.3 | CDS | 4183837 | 4183975 | 4183837 | ID=cds.MS.gene55835.t1;Parent=MS.gene55835.t1 |
| chr4.3 | exon | 4184482 | 4184658 | 4184482 | ID=MS.gene55835.t1.exon9;Parent=MS.gene55835.t1 |
| chr4.3 | CDS | 4184482 | 4184658 | 4184482 | ID=cds.MS.gene55835.t1;Parent=MS.gene55835.t1 |
| chr4.3 | exon | 4184931 | 4185098 | 4184931 | ID=MS.gene55835.t1.exon10;Parent=MS.gene55835.t1 |
| chr4.3 | CDS | 4184931 | 4185098 | 4184931 | ID=cds.MS.gene55835.t1;Parent=MS.gene55835.t1 |
| chr4.3 | exon | 4185551 | 4185646 | 4185551 | ID=MS.gene55835.t1.exon11;Parent=MS.gene55835.t1 |
| chr4.3 | CDS | 4185551 | 4185646 | 4185551 | ID=cds.MS.gene55835.t1;Parent=MS.gene55835.t1 |
| chr4.3 | exon | 4186633 | 4186761 | 4186633 | ID=MS.gene55835.t1.exon12;Parent=MS.gene55835.t1 |
| chr4.3 | CDS | 4186633 | 4186761 | 4186633 | ID=cds.MS.gene55835.t1;Parent=MS.gene55835.t1 |
| chr4.3 | exon | 4186910 | 4187099 | 4186910 | ID=MS.gene55835.t1.exon13;Parent=MS.gene55835.t1 |
| chr4.3 | CDS | 4186910 | 4187099 | 4186910 | ID=cds.MS.gene55835.t1;Parent=MS.gene55835.t1 |
| chr4.3 | exon | 4190366 | 4190409 | 4190366 | ID=MS.gene55835.t1.exon14;Parent=MS.gene55835.t1 |
| chr4.3 | CDS | 4190366 | 4190409 | 4190366 | ID=cds.MS.gene55835.t1;Parent=MS.gene55835.t1 |
| chr4.3 | exon | 4190454 | 4190524 | 4190454 | ID=MS.gene55835.t1.exon15;Parent=MS.gene55835.t1 |
| chr4.3 | CDS | 4190454 | 4190524 | 4190454 | ID=cds.MS.gene55835.t1;Parent=MS.gene55835.t1 |
| chr4.3 | exon | 4191352 | 4191484 | 4191352 | ID=MS.gene55835.t1.exon16;Parent=MS.gene55835.t1 |
| chr4.3 | CDS | 4191352 | 4191484 | 4191352 | ID=cds.MS.gene55835.t1;Parent=MS.gene55835.t1 |
| Gene Sequence |
| Protein sequence |
