Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061182.t1 | XP_003609791.2 | 94.9 | 763 | 15 | 1 | 71 | 809 | 129 | 891 | 0.00E+00 | 1423.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061182.t1 | B8BKI8 | 75.6 | 778 | 152 | 6 | 70 | 809 | 146 | 923 | 0.0e+00 | 1140.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061182.t1 | G7JNY1 | 94.9 | 763 | 15 | 1 | 71 | 809 | 129 | 891 | 0.0e+00 | 1423.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene061182 | MS.gene61735 | 0.986106 | 1.08E-165 | -1.69E-46 |
| MS.gene061182 | MS.gene61736 | 0.98019 | 1.19E-149 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATTATTATTATTATTTGTA+TGG | - | 32477:21770-21789 | MS.gene061182:intron | 10.0% |
| !!! | TATCTTGTTATTTTATTTAT+GGG | - | 32477:18826-18845 | MS.gene061182:intron | 10.0% |
| !! | AACAACAACAAATAATTAAA+TGG | + | 32477:20370-20389 | MS.gene061182:intergenic | 15.0% |
| !! | ATAATGACTTATAAAGTATA+AGG | - | 32477:18547-18566 | MS.gene061182:CDS | 15.0% |
| !! | ATATTCTGATAAAAAATTTC+AGG | - | 32477:20112-20131 | MS.gene061182:intron | 15.0% |
| !!! | AACAAATTATAGAACTTTTT+TGG | - | 32477:19809-19828 | MS.gene061182:CDS | 15.0% |
| !!! | ATCTTGTTATTTTATTTATG+GGG | - | 32477:18827-18846 | MS.gene061182:intron | 15.0% |
| !!! | CTATCTTGTTATTTTATTTA+TGG | - | 32477:18825-18844 | MS.gene061182:intron | 15.0% |
| !! | AAATATCGAATCTTCAAAAA+TGG | + | 32477:18075-18094 | MS.gene061182:intergenic | 20.0% |
| !! | AACAATAATCAACATGAATT+AGG | + | 32477:19723-19742 | MS.gene061182:intergenic | 20.0% |
| !! | ACACTAAGATAAATATTATC+AGG | - | 32477:20926-20945 | MS.gene061182:intron | 20.0% |
| !! | CACTAAGATAAATATTATCA+GGG | - | 32477:20927-20946 | MS.gene061182:intron | 20.0% |
| !! | CGTTATAGAAATAATCTATA+TGG | + | 32477:18326-18345 | MS.gene061182:intergenic | 20.0% |
| !! | TAAAAAAATGCCAAAAGAAA+AGG | + | 32477:22083-22102 | MS.gene061182:intergenic | 20.0% |
| !! | TTTGTGACTAAATAAATTGA+CGG | - | 32477:19836-19855 | MS.gene061182:CDS | 20.0% |
| !!! | AAGTTTTGCAAAATAAGTTA+AGG | - | 32477:19679-19698 | MS.gene061182:intron | 20.0% |
| !!! | ACAAAAGAGATTGAAATTTT+GGG | - | 32477:20276-20295 | MS.gene061182:intron | 20.0% |
| !!! | AGGCTTCTTTTAATTTTTAA+TGG | - | 32477:20606-20625 | MS.gene061182:intron | 20.0% |
| !!! | GAATAAGAATTCTGAAAAAA+CGG | + | 32477:19558-19577 | MS.gene061182:intergenic | 20.0% |
| !!! | TAACTTATTTTGCAAAACTT+TGG | + | 32477:19679-19698 | MS.gene061182:intergenic | 20.0% |
| !!! | TAATTATTTGTTGTTGTTGA+TGG | - | 32477:20372-20391 | MS.gene061182:intron | 20.0% |
| !!! | TTACAAATTACCTTTTCTTT+TGG | - | 32477:22070-22089 | MS.gene061182:intron | 20.0% |
| !!! | TTATTTTATTTATGGGGTTA+TGG | - | 32477:18833-18852 | MS.gene061182:intron | 20.0% |
| !!! | TTTTTTTCCTATAGTTAAAC+CGG | + | 32477:17765-17784 | MS.gene061182:intergenic | 20.0% |
| ! | AAAAGACACAATAAATTAGC+TGG | + | 32477:19107-19126 | MS.gene061182:intergenic | 25.0% |
| ! | AAATACATCTTGAAGTTCTA+AGG | + | 32477:20334-20353 | MS.gene061182:intergenic | 25.0% |
| ! | AAATCACTATAGTAATGTGA+TGG | + | 32477:22111-22130 | MS.gene061182:intergenic | 25.0% |
| ! | AAGAAGCCTATAAATAACAA+AGG | + | 32477:20595-20614 | MS.gene061182:intergenic | 25.0% |
| ! | AATAAGCTGAAAACAGTTTA+TGG | - | 32477:18252-18271 | MS.gene061182:intron | 25.0% |
| ! | ATACAGTTTGAAAGAACTAA+TGG | + | 32477:18296-18315 | MS.gene061182:intergenic | 25.0% |
| ! | ATATCGAAACGAGAAATAAT+AGG | + | 32477:21256-21275 | MS.gene061182:intergenic | 25.0% |
| ! | ATCTACTTTGATATCTACAT+GGG | + | 32477:22326-22345 | MS.gene061182:intergenic | 25.0% |
| ! | CTATACTATAGACAATTTAC+AGG | - | 32477:19897-19916 | MS.gene061182:intron | 25.0% |
| ! | GAAAAAAATTTCATCGACAA+AGG | - | 32477:17777-17796 | MS.gene061182:CDS | 25.0% |
| ! | GAGATACTTAGATTTATTGT+TGG | - | 32477:18509-18528 | MS.gene061182:intron | 25.0% |
| ! | TACCTTAAATTGATGTTTAC+AGG | + | 32477:21533-21552 | MS.gene061182:intergenic | 25.0% |
| ! | TGAATACAATGATTCGAATT+GGG | - | 32477:19448-19467 | MS.gene061182:CDS | 25.0% |
| ! | TTCGAATCATTGTATTCAAA+TGG | + | 32477:19446-19465 | MS.gene061182:intergenic | 25.0% |
| ! | TTCTGATAAAAAATTTCAGG+AGG | - | 32477:20115-20134 | MS.gene061182:intron | 25.0% |
| ! | TTGAATACAATGATTCGAAT+TGG | - | 32477:19447-19466 | MS.gene061182:CDS | 25.0% |
| !! | GACAAAAGAGATTGAAATTT+TGG | - | 32477:20275-20294 | MS.gene061182:intron | 25.0% |
| !! | TTTTCAGAATTCTTATTCAG+AGG | - | 32477:19560-19579 | MS.gene061182:CDS | 25.0% |
| !! | TTTTGCAAAATAAGTTAAGG+AGG | - | 32477:19682-19701 | MS.gene061182:intron | 25.0% |
| !!! | ACCTATCCTTTGTTATTTAT+AGG | - | 32477:20586-20605 | MS.gene061182:intron | 25.0% |
| !!! | ACTATTAGTTTTTCATCCAA+TGG | + | 32477:19400-19419 | MS.gene061182:intergenic | 25.0% |
| !!! | ATTACTATAGTGATTTTGAC+TGG | - | 32477:22115-22134 | MS.gene061182:intron | 25.0% |
| !!! | ATTACTTCTAAAACAGAATG+AGG | + | 32477:19217-19236 | MS.gene061182:intergenic | 25.0% |
| !!! | CTACTTTGACTTGTTTATAT+TGG | - | 32477:20053-20072 | MS.gene061182:CDS | 25.0% |
| !!! | GGTTTAGTTTCAATTTTATG+AGG | - | 32477:21155-21174 | MS.gene061182:intron | 25.0% |
| !!! | TCATTCTGTTTTAGAAGTAA+TGG | - | 32477:19216-19235 | MS.gene061182:CDS | 25.0% |
| !!! | TTGCAAATGCTATGTTTTTT+AGG | - | 32477:18372-18391 | MS.gene061182:CDS | 25.0% |
| !!! | TTTTCAACAAGTTTTGTAGT+TGG | - | 32477:19061-19080 | MS.gene061182:intron | 25.0% |
| !!! | TTTTTTCCTATAGTTAAACC+GGG | + | 32477:17764-17783 | MS.gene061182:intergenic | 25.0% |
| AAAACCATTCTTTGTGTTCA+AGG | + | 32477:20174-20193 | MS.gene061182:intergenic | 30.0% | |
| AAATGAGGATGATCAATATG+AGG | - | 32477:18752-18771 | MS.gene061182:CDS | 30.0% | |
| AATACAATGATTCGAATTGG+GGG | - | 32477:19450-19469 | MS.gene061182:CDS | 30.0% | |
| AATGCTCTTCTCCTAAAATT+CGG | - | 32477:22162-22181 | MS.gene061182:intron | 30.0% | |
| CATCTACTTTGATATCTACA+TGG | + | 32477:22327-22346 | MS.gene061182:intergenic | 30.0% | |
| CTATTGAATGAACATGGATT+AGG | - | 32477:18429-18448 | MS.gene061182:intron | 30.0% | |
| GAATACAATGATTCGAATTG+GGG | - | 32477:19449-19468 | MS.gene061182:CDS | 30.0% | |
| GACATAAATGTTCTTCTTCT+TGG | - | 32477:20524-20543 | MS.gene061182:CDS | 30.0% | |
| GCCTATAAATAACAAAGGAT+AGG | + | 32477:20590-20609 | MS.gene061182:intergenic | 30.0% | |
| GTACAACTATTGAATGAACA+TGG | - | 32477:18423-18442 | MS.gene061182:intron | 30.0% | |
| GTCAAGAAAAGAATGTTGAA+GGG | - | 32477:20483-20502 | MS.gene061182:CDS | 30.0% | |
| GTCAGATATGTTGAAAAAAC+TGG | - | 32477:20665-20684 | MS.gene061182:CDS | 30.0% | |
| TAAGAAATCCTTGAATTTCC+TGG | + | 32477:18960-18979 | MS.gene061182:intergenic | 30.0% | |
| TATTGTTCTTCACTTTGACT+TGG | - | 32477:19736-19755 | MS.gene061182:intron | 30.0% | |
| TCATTTCTACCCAAAAGTTT+GGG | - | 32477:21968-21987 | MS.gene061182:intron | 30.0% | |
| TGAAATCACAAGGATTTGAA+AGG | + | 32477:19654-19673 | MS.gene061182:intergenic | 30.0% | |
| TGCCTGTAAACATCAATTTA+AGG | - | 32477:21528-21547 | MS.gene061182:intron | 30.0% | |
| TGTTCAATATTGACAGTGAA+CGG | + | 32477:19624-19643 | MS.gene061182:intergenic | 30.0% | |
| TTATTTCCATAACCACTACA+GGG | + | 32477:18237-18256 | MS.gene061182:intergenic | 30.0% | |
| TTCATTTCTACCCAAAAGTT+TGG | - | 32477:21967-21986 | MS.gene061182:intron | 30.0% | |
| TTCGTTAAGTAAAAAGAGAC+AGG | + | 32477:21739-21758 | MS.gene061182:intergenic | 30.0% | |
| TTGTGAAAATAACCACTACA+GGG | + | 32477:18140-18159 | MS.gene061182:intergenic | 30.0% | |
| TTTCATCCAATGGAAGATAT+GGG | + | 32477:19390-19409 | MS.gene061182:intergenic | 30.0% | |
| ! | AACTACTGATTACTGATATG+TGG | - | 32477:21134-21153 | MS.gene061182:CDS | 30.0% |
| ! | CAATATCAAGACCGAATTTT+AGG | + | 32477:22176-22195 | MS.gene061182:intergenic | 30.0% |
| ! | GATTGAGTTCTTGATTTTAC+AGG | - | 32477:21346-21365 | MS.gene061182:CDS | 30.0% |
| ! | TTTTCATCCAATGGAAGATA+TGG | + | 32477:19391-19410 | MS.gene061182:intergenic | 30.0% |
| !! | AACTTTGGTTTGAAATCACA+AGG | + | 32477:19664-19683 | MS.gene061182:intergenic | 30.0% |
| !! | GACAAAGGAAAATTTTGATC+TGG | - | 32477:17792-17811 | MS.gene061182:CDS | 30.0% |
| !!! | ATGCTTATTTTAAGCGAGTT+GGG | - | 32477:18484-18503 | MS.gene061182:intron | 30.0% |
| !!! | CCTGCTTTTGAAATTTGATA+GGG | - | 32477:17910-17929 | MS.gene061182:intron | 30.0% |
| !!! | TATGCTTATTTTAAGCGAGT+TGG | - | 32477:18483-18502 | MS.gene061182:intron | 30.0% |
| !!! | TCCTGCTTTTGAAATTTGAT+AGG | - | 32477:17909-17928 | MS.gene061182:intron | 30.0% |
| AAAAAATTTCAGGAGGTCAC+AGG | - | 32477:20122-20141 | MS.gene061182:intron | 35.0% | |
| AACAAACCCTTTCTCCAATT+CGG | + | 32477:20311-20330 | MS.gene061182:intergenic | 35.0% | |
| AAGAAGATGAAGTCTTGGTT+TGG | + | 32477:21088-21107 | MS.gene061182:intergenic | 35.0% | |
| AAGTCTCCATGTTCATTCTT+TGG | + | 32477:18998-19017 | MS.gene061182:intergenic | 35.0% | |
| AATGTTACAATCTCTTCTCC+AGG | + | 32477:20031-20050 | MS.gene061182:intergenic | 35.0% | |
| AGCATAAGCATATCAAAAGC+TGG | - | 32477:20979-20998 | MS.gene061182:CDS | 35.0% | |
| AGTATCACTTCCTTGTATCT+CGG | + | 32477:19980-19999 | MS.gene061182:intergenic | 35.0% | |
| AGTCTCCATGTTCATTCTTT+GGG | + | 32477:18997-19016 | MS.gene061182:intergenic | 35.0% | |
| ATGACCAGATTCGAAATATC+AGG | - | 32477:19332-19351 | MS.gene061182:intron | 35.0% | |
| ATGCTCATTTATATTCTCCG+TGG | - | 32477:22241-22260 | MS.gene061182:CDS | 35.0% | |
| ATTTGACAAGATGAATGACC+AGG | - | 32477:20832-20851 | MS.gene061182:CDS | 35.0% | |
| CATTTCTACCCAAAAGTTTG+GGG | - | 32477:21969-21988 | MS.gene061182:intron | 35.0% | |
| CCCTATCAAATTTCAAAAGC+AGG | + | 32477:17913-17932 | MS.gene061182:intergenic | 35.0% | |
| CTTATTTCCATAACCACTAC+AGG | + | 32477:18238-18257 | MS.gene061182:intergenic | 35.0% | |
| CTTGTGAAAATAACCACTAC+AGG | + | 32477:18141-18160 | MS.gene061182:intergenic | 35.0% | |
| GAAGGTAAGCAAATATGCAA+GGG | - | 32477:21061-21080 | MS.gene061182:CDS | 35.0% | |
| GGCACATTGAATCAATGATA+AGG | - | 32477:21857-21876 | MS.gene061182:intron | 35.0% | |
| GGTCAAGAAAAGAATGTTGA+AGG | - | 32477:20482-20501 | MS.gene061182:CDS | 35.0% | |
| GGTTTCTAATTGAACTCTGT+TGG | - | 32477:21176-21195 | MS.gene061182:intron | 35.0% | |
| GTACTTCTTCAACAGATCTT+GGG | + | 32477:21613-21632 | MS.gene061182:intergenic | 35.0% | |
| GTTACCTGATATTTCGAATC+TGG | + | 32477:19339-19358 | MS.gene061182:intergenic | 35.0% | |
| GTTCACTGTCAATATTGAAC+AGG | - | 32477:19623-19642 | MS.gene061182:intron | 35.0% | |
| TACTTCTTCAACAGATCTTG+GGG | + | 32477:21612-21631 | MS.gene061182:intergenic | 35.0% | |
| TCAAGGAACTCTTAGAGAAT+GGG | - | 32477:18904-18923 | MS.gene061182:intron | 35.0% | |
| TCCAACTACTGATCAAAATG+AGG | - | 32477:18737-18756 | MS.gene061182:CDS | 35.0% | |
| TCTTATTCAGAGGTGAAAGT+TGG | - | 32477:19570-19589 | MS.gene061182:CDS | 35.0% | |
| TGAACTTTGTATTGCAGACA+CGG | - | 32477:18587-18606 | MS.gene061182:CDS | 35.0% | |
| TGAATTTCCTGGCTATGAAA+CGG | + | 32477:18949-18968 | MS.gene061182:intergenic | 35.0% | |
| TGACAAAGAAGATGAAGTCT+TGG | + | 32477:21093-21112 | MS.gene061182:intergenic | 35.0% | |
| TGCAAAATAAGTTAAGGAGG+AGG | - | 32477:19685-19704 | MS.gene061182:intron | 35.0% | |
| TGCTCATTTATATTCTCCGT+GGG | - | 32477:22242-22261 | MS.gene061182:CDS | 35.0% | |
| TTCAACTGTGTATGACTTCT+TGG | - | 32477:17935-17954 | MS.gene061182:intron | 35.0% | |
| TTCAAGGAACTCTTAGAGAA+TGG | - | 32477:18903-18922 | MS.gene061182:intron | 35.0% | |
| TTGTCCTTGAACACAAAGAA+TGG | - | 32477:20167-20186 | MS.gene061182:intron | 35.0% | |
| TTTATGGGGTTATGGAATGT+AGG | - | 32477:18841-18860 | MS.gene061182:intron | 35.0% | |
| TTTCATAGCCAGGAAATTCA+AGG | - | 32477:18949-18968 | MS.gene061182:intron | 35.0% | |
| TTTCGAATCTGGTCATAAAC+TGG | + | 32477:19328-19347 | MS.gene061182:intergenic | 35.0% | |
| ! | ATAATTTGCCTCAACAACAG+TGG | + | 32477:20207-20226 | MS.gene061182:intergenic | 35.0% |
| ! | ATCTATTTTCTTACCGATCC+TGG | + | 32477:20853-20872 | MS.gene061182:intergenic | 35.0% |
| ! | GACTTGTTTATATTGGTCGT+GGG | - | 32477:20060-20079 | MS.gene061182:CDS | 35.0% |
| !! | TCCTCATTTTGATCAGTAGT+TGG | + | 32477:18741-18760 | MS.gene061182:intergenic | 35.0% |
| !! | TGACTTGTTTATATTGGTCG+TGG | - | 32477:20059-20078 | MS.gene061182:CDS | 35.0% |
| !!! | AGGATTTTGATGATGAAGCT+GGG | - | 32477:18864-18883 | MS.gene061182:intron | 35.0% |
| !!! | TCTGTGACTCAAAGCTTTTT+TGG | - | 32477:21569-21588 | MS.gene061182:intron | 35.0% |
| !!! | TGCTTATTTTAAGCGAGTTG+GGG | - | 32477:18485-18504 | MS.gene061182:intron | 35.0% |
| !!! | TTTTTTAGGCAACTTCACTC+TGG | - | 32477:18386-18405 | MS.gene061182:CDS | 35.0% |
| AAATCAGCGTCATGTAACCT+TGG | + | 32477:21663-21682 | MS.gene061182:intergenic | 40.0% | |
| AAGGTCACAAAGACACTCAA+GGG | - | 32477:18707-18726 | MS.gene061182:intron | 40.0% | |
| AAGTATGACTGTGGCAAATG+TGG | - | 32477:19519-19538 | MS.gene061182:CDS | 40.0% | |
| AATCAGCGTCATGTAACCTT+GGG | + | 32477:21662-21681 | MS.gene061182:intergenic | 40.0% | |
| ACAAACCCTTTCTCCAATTC+GGG | + | 32477:20310-20329 | MS.gene061182:intergenic | 40.0% | |
| ACAAGATGAATGACCAGGAT+CGG | - | 32477:20837-20856 | MS.gene061182:CDS | 40.0% | |
| ACATTACCTTCACAATGCAG+AGG | + | 32477:21279-21298 | MS.gene061182:intergenic | 40.0% | |
| ACCAAAGATTGATGGAGCAA+TGG | + | 32477:20420-20439 | MS.gene061182:intergenic | 40.0% | |
| ACTGTGTATGACTTCTTGGA+TGG | - | 32477:17939-17958 | MS.gene061182:intron | 40.0% | |
| AGGAATTTAGTAAGGACCTC+TGG | + | 32477:21503-21522 | MS.gene061182:intergenic | 40.0% | |
| AGTATGACTGTGGCAAATGT+GGG | - | 32477:19520-19539 | MS.gene061182:CDS | 40.0% | |
| ATACTTCACCTGTTGCAACA+GGG | + | 32477:19505-19524 | MS.gene061182:intergenic | 40.0% | |
| ATAGTTGCCTTATATCGAGC+AGG | - | 32477:19415-19434 | MS.gene061182:intron | 40.0% | |
| CAAGTGACAATGATCTTGAC+GGG | - | 32477:18667-18686 | MS.gene061182:intron | 40.0% | |
| CACTTCAAGTCACAACCTAA+GGG | - | 32477:21422-21441 | MS.gene061182:intron | 40.0% | |
| CATTTGGAAGACATTCTCAC+TGG | - | 32477:22283-22302 | MS.gene061182:CDS | 40.0% | |
| CCAAGTGACAATGATCTTGA+CGG | - | 32477:18666-18685 | MS.gene061182:intron | 40.0% | |
| CGTAACCAATGCTTTGCATT+TGG | - | 32477:22267-22286 | MS.gene061182:CDS | 40.0% | |
| CGTACTTCTTCAACAGATCT+TGG | + | 32477:21614-21633 | MS.gene061182:intergenic | 40.0% | |
| CTGATAAGCAAAATGGTGTC+AGG | - | 32477:19031-19050 | MS.gene061182:CDS | 40.0% | |
| CTGGTCATAAACTGGTAAGT+TGG | + | 32477:19320-19339 | MS.gene061182:intergenic | 40.0% | |
| GAGTCATTATTAGCACCCTT+AGG | + | 32477:21440-21459 | MS.gene061182:intergenic | 40.0% | |
| GATTTGCGAATAAGATACGC+CGG | + | 32477:17685-17704 | MS.gene061182:intergenic | 40.0% | |
| GGAAGGTAAGCAAATATGCA+AGG | - | 32477:21060-21079 | MS.gene061182:CDS | 40.0% | |
| GGAATTTAGTAAGGACCTCT+GGG | + | 32477:21502-21521 | MS.gene061182:intergenic | 40.0% | |
| GGATATATCACAATTCGCTC+TGG | - | 32477:18450-18469 | MS.gene061182:intron | 40.0% | |
| GGCATTCATGGAATTTGTAC+TGG | - | 32477:22136-22155 | MS.gene061182:intron | 40.0% | |
| GTCAACCCAAAGAATGAACA+TGG | - | 32477:18989-19008 | MS.gene061182:CDS | 40.0% | |
| GTCTTCCAAATGCAAAGCAT+TGG | + | 32477:22275-22294 | MS.gene061182:intergenic | 40.0% | |
| TACACTCCCATATCTTCCAT+TGG | - | 32477:19381-19400 | MS.gene061182:intron | 40.0% | |
| TATGAGATGTACCGTGTTCA+AGG | - | 32477:18887-18906 | MS.gene061182:intron | 40.0% | |
| TCAACAACAGTGGAAAACAC+TGG | + | 32477:20197-20216 | MS.gene061182:intergenic | 40.0% | |
| TCAATGTGCCTTACAGCAAT+GGG | + | 32477:21847-21866 | MS.gene061182:intergenic | 40.0% | |
| TCACTTCAAGTCACAACCTA+AGG | - | 32477:21421-21440 | MS.gene061182:intron | 40.0% | |
| TCATCGTGACCAAAGATTGA+TGG | + | 32477:20428-20447 | MS.gene061182:intergenic | 40.0% | |
| TCCATTGCTCCATCAATCTT+TGG | - | 32477:20416-20435 | MS.gene061182:CDS | 40.0% | |
| TCCTATAGTTAAACCGGGTA+CGG | + | 32477:17759-17778 | MS.gene061182:intergenic | 40.0% | |
| TGGAATTGTCACATCTCTTC+AGG | - | 32477:20999-21018 | MS.gene061182:CDS | 40.0% | |
| TGTAGCTAACAAGTGCAGTT+TGG | - | 32477:19129-19148 | MS.gene061182:intron | 40.0% | |
| TGTATATGCAGAACTGCAGA+AGG | - | 32477:21698-21717 | MS.gene061182:intron | 40.0% | |
| TGTGCGTCTGATAAGCAAAA+TGG | - | 32477:19024-19043 | MS.gene061182:CDS | 40.0% | |
| TTACCTTCCTCCAATTGGAT+TGG | + | 32477:21049-21068 | MS.gene061182:intergenic | 40.0% | |
| TTCAATGTGCCTTACAGCAA+TGG | + | 32477:21848-21867 | MS.gene061182:intergenic | 40.0% | |
| TTGACCTCCAAACATAGCTA+AGG | + | 32477:20468-20487 | MS.gene061182:intergenic | 40.0% | |
| TTTCATAAGCTACCCTGTAG+TGG | - | 32477:18125-18144 | MS.gene061182:CDS | 40.0% | |
| TTTGCTTACCTTCCTCCAAT+TGG | + | 32477:21054-21073 | MS.gene061182:intergenic | 40.0% | |
| ! | AGTGTTTTCCACTGTTGTTG+AGG | - | 32477:20196-20215 | MS.gene061182:intron | 40.0% |
| ! | ATAGCCTTAGCTATGTTTGG+AGG | - | 32477:20461-20480 | MS.gene061182:CDS | 40.0% |
| ! | CTCTAAGAGTTCCTTGAACA+CGG | + | 32477:18901-18920 | MS.gene061182:intergenic | 40.0% |
| ! | GCAATAGCCTTAGCTATGTT+TGG | - | 32477:20458-20477 | MS.gene061182:CDS | 40.0% |
| ! | TCTCTTGTTTAGCACGAACA+AGG | - | 32477:21817-21836 | MS.gene061182:intron | 40.0% |
| ! | TGGGAGTGTAATACATCAGT+TGG | + | 32477:19371-19390 | MS.gene061182:intergenic | 40.0% |
| ! | TTTCTGCACCCCAAACTTTT+GGG | + | 32477:21980-21999 | MS.gene061182:intergenic | 40.0% |
| !!! | GAGGATTTTGATGATGAAGC+TGG | - | 32477:18863-18882 | MS.gene061182:intron | 40.0% |
| !!! | GTGATTTTGACTGGCATTCA+TGG | - | 32477:22124-22143 | MS.gene061182:intron | 40.0% |
| AAACCCTTTCTCCAATTCGG+GGG | + | 32477:20308-20327 | MS.gene061182:intergenic | 45.0% | |
| AAGATCCAGTCACAAGGGAA+TGG | - | 32477:20753-20772 | MS.gene061182:CDS | 45.0% | |
| AAGCTACCCTGTAGTGGTTA+TGG | - | 32477:18131-18150 | MS.gene061182:CDS | 45.0% | |
| ACAGACGAGGATGAGGAATT+TGG | - | 32477:17709-17728 | MS.gene061182:CDS | 45.0% | |
| ACAGTTACAGGCCCTCTAAA+AGG | - | 32477:18616-18635 | MS.gene061182:CDS | 45.0% | |
| AGCTAGCCAAATGGCAATGT+TGG | + | 32477:19188-19207 | MS.gene061182:intergenic | 45.0% | |
| ATGGACACAGAGATGAGTGT+TGG | - | 32477:17958-17977 | MS.gene061182:intron | 45.0% | |
| ATGGGGTTATGGAATGTAGG+AGG | - | 32477:18844-18863 | MS.gene061182:intron | 45.0% | |
| ATTGCTGCTGCCAATCCAAT+TGG | - | 32477:21036-21055 | MS.gene061182:CDS | 45.0% | |
| CAAACCCTTTCTCCAATTCG+GGG | + | 32477:20309-20328 | MS.gene061182:intergenic | 45.0% | |
| CAACAGGTGAAGTATGACTG+TGG | - | 32477:19510-19529 | MS.gene061182:CDS | 45.0% | |
| CAATGTGCCTTACAGCAATG+GGG | + | 32477:21846-21865 | MS.gene061182:intergenic | 45.0% | |
| CAGACAGCATGTCATACAAG+AGG | - | 32477:21909-21928 | MS.gene061182:intron | 45.0% | |
| CATACAAGAGGATGTGGACA+TGG | - | 32477:21921-21940 | MS.gene061182:intron | 45.0% | |
| CATACTTCACCTGTTGCAAC+AGG | + | 32477:19506-19525 | MS.gene061182:intergenic | 45.0% | |
| CCACAAAGATCCAGTCACAA+GGG | - | 32477:20748-20767 | MS.gene061182:CDS | 45.0% | |
| CCGTCAAGATCATTGTCACT+TGG | + | 32477:18669-18688 | MS.gene061182:intergenic | 45.0% | |
| CCTATAGTTAAACCGGGTAC+GGG | + | 32477:17758-17777 | MS.gene061182:intergenic | 45.0% | |
| CGATATCCTCTGCATTGTGA+AGG | - | 32477:21270-21289 | MS.gene061182:CDS | 45.0% | |
| CTATAGTTAAACCGGGTACG+GGG | + | 32477:17757-17776 | MS.gene061182:intergenic | 45.0% | |
| CTGTATACACCACTGGCAAA+GGG | - | 32477:20696-20715 | MS.gene061182:CDS | 45.0% | |
| GAAGGTCACAAAGACACTCA+AGG | - | 32477:18706-18725 | MS.gene061182:intron | 45.0% | |
| GCAAGCATTTCATCAGTGAC+TGG | + | 32477:21383-21402 | MS.gene061182:intergenic | 45.0% | |
| GCAGCAGCAGGAATTTAGTA+AGG | + | 32477:21511-21530 | MS.gene061182:intergenic | 45.0% | |
| GCATGTCATACAAGAGGATG+TGG | - | 32477:21915-21934 | MS.gene061182:intron | 45.0% | |
| GCTAGCCAAATGGCAATGTT+GGG | + | 32477:19187-19206 | MS.gene061182:intergenic | 45.0% | |
| GGATGAATAGTTCACCTGGA+AGG | - | 32477:18688-18707 | MS.gene061182:intron | 45.0% | |
| GGTAAGTATCCATGAAGCCA+TGG | - | 32477:20948-20967 | MS.gene061182:intron | 45.0% | |
| GTATGACTGTGGCAAATGTG+GGG | - | 32477:19521-19540 | MS.gene061182:CDS | 45.0% | |
| GTCTTCCTGTGTAAGTTCGT+AGG | + | 32477:20258-20277 | MS.gene061182:intergenic | 45.0% | |
| TAAGTTCGTAGGCAGAGAAG+AGG | + | 32477:20247-20266 | MS.gene061182:intergenic | 45.0% | |
| TACTTCACCTGTTGCAACAG+GGG | + | 32477:19504-19523 | MS.gene061182:intergenic | 45.0% | |
| TATAGTTAAACCGGGTACGG+GGG | + | 32477:17756-17775 | MS.gene061182:intergenic | 45.0% | |
| TCCACAAAGATCCAGTCACA+AGG | - | 32477:20747-20766 | MS.gene061182:CDS | 45.0% | |
| TCCATCCCAACATTGCCATT+TGG | - | 32477:19179-19198 | MS.gene061182:CDS | 45.0% | |
| TCCTCTGTCAGCTAGAACAA+GGG | + | 32477:20795-20814 | MS.gene061182:intergenic | 45.0% | |
| TGTATACACCACTGGCAAAG+GGG | - | 32477:20697-20716 | MS.gene061182:CDS | 45.0% | |
| TGTCCCGAGTGTCAATCAAA+AGG | - | 32477:19597-19616 | MS.gene061182:intron | 45.0% | |
| TTCCTCTGTCAGCTAGAACA+AGG | + | 32477:20796-20815 | MS.gene061182:intergenic | 45.0% | |
| ! | CAGTTACAGGCCCTCTAAAA+GGG | - | 32477:18617-18636 | MS.gene061182:CDS | 45.0% |
| ! | CTTTCTGCACCCCAAACTTT+TGG | + | 32477:21981-22000 | MS.gene061182:intergenic | 45.0% |
| ! | GTTCTTCTTCTTGGTGATCC+AGG | - | 32477:20533-20552 | MS.gene061182:CDS | 45.0% |
| !! | AATCGAGACTTTGCTGTTCC+TGG | + | 32477:20554-20573 | MS.gene061182:intergenic | 45.0% |
| !! | ACAGAGATGAGTGTTGGTCA+AGG | - | 32477:17964-17983 | MS.gene061182:intron | 45.0% |
| !! | CGGTCCTTTTGATTGACACT+CGG | + | 32477:19604-19623 | MS.gene061182:intergenic | 45.0% |
| !! | GGTCCTTTTGATTGACACTC+GGG | + | 32477:19603-19622 | MS.gene061182:intergenic | 45.0% |
| !! | TTTTGATTGACACTCGGGAC+AGG | + | 32477:19598-19617 | MS.gene061182:intergenic | 45.0% |
| !! | ATTATTATTATTATTTGTAT+GGG | - | 32477:21771-21790 | MS.gene061182:intron | 5.0% |
| AAGACCCCCGAATTGGAGAA+AGG | - | 32477:20301-20320 | MS.gene061182:intron | 50.0% | |
| AAGGAGTCCCCATTGCTGTA+AGG | - | 32477:21836-21855 | MS.gene061182:intron | 50.0% | |
| ACAAGGGAATGGACCCTTGA+GGG | - | 32477:20764-20783 | MS.gene061182:CDS | 50.0% | |
| ACACGGACGATGACAGTTAC+AGG | - | 32477:18604-18623 | MS.gene061182:CDS | 50.0% | |
| ACTTCACCTGTTGCAACAGG+GGG | + | 32477:19503-19522 | MS.gene061182:intergenic | 50.0% | |
| AGAAGACCTGTGATCAGCTC+TGG | + | 32477:18643-18662 | MS.gene061182:intergenic | 50.0% | |
| AGACCCCCGAATTGGAGAAA+GGG | - | 32477:20302-20321 | MS.gene061182:intron | 50.0% | |
| AGGTGCATCAGCTAGCCAAA+TGG | + | 32477:19197-19216 | MS.gene061182:intergenic | 50.0% | |
| CAGAGAGCTGTATACACCAC+TGG | - | 32477:20689-20708 | MS.gene061182:CDS | 50.0% | |
| CCCGTACCCGGTTTAACTAT+AGG | - | 32477:17755-17774 | MS.gene061182:CDS | 50.0% | |
| CCCTTGTGACTGGATCTTTG+TGG | + | 32477:20751-20770 | MS.gene061182:intergenic | 50.0% | |
| CTCTGCCTACGAACTTACAC+AGG | - | 32477:20250-20269 | MS.gene061182:intron | 50.0% | |
| CTGCCAATCCAATTGGAGGA+AGG | - | 32477:21043-21062 | MS.gene061182:CDS | 50.0% | |
| GACGGGATGAATAGTTCACC+TGG | - | 32477:18684-18703 | MS.gene061182:intron | 50.0% | |
| GAGTGTCTTTGTGACCTTCC+AGG | + | 32477:18705-18724 | MS.gene061182:intergenic | 50.0% | |
| GCCAAATGGCAATGTTGGGA+TGG | + | 32477:19183-19202 | MS.gene061182:intergenic | 50.0% | |
| GCTGTATACACCACTGGCAA+AGG | - | 32477:20695-20714 | MS.gene061182:CDS | 50.0% | |
| GGATCTGCCTGCTCGATATA+AGG | + | 32477:19425-19444 | MS.gene061182:intergenic | 50.0% | |
| GTCACAAAGACACTCAAGGG+AGG | - | 32477:18710-18729 | MS.gene061182:intron | 50.0% | |
| TGATGTTTACAGGCAGCAGC+AGG | + | 32477:21523-21542 | MS.gene061182:intergenic | 50.0% | |
| TGGCATGCCAGATGCATCTT+CGG | + | 32477:21474-21493 | MS.gene061182:intergenic | 50.0% | |
| TTCCTCATCCTCGTCTGTGT+CGG | + | 32477:17707-17726 | MS.gene061182:intergenic | 50.0% | |
| ! | AGTTTTCCCCCTGTTGCAAC+AGG | - | 32477:19494-19513 | MS.gene061182:CDS | 50.0% |
| ! | GAAGGGAAGCATAGACTACG+AGG | - | 32477:20500-20519 | MS.gene061182:CDS | 50.0% |
| ! | GGCAAATGTGGGGCAGTTTT+GGG | - | 32477:19531-19550 | MS.gene061182:CDS | 50.0% |
| ! | TCTGAGATGCATTCGCGCAT+GGG | + | 32477:21893-21912 | MS.gene061182:intergenic | 50.0% |
| ! | TGGCAAATGTGGGGCAGTTT+TGG | - | 32477:19530-19549 | MS.gene061182:CDS | 50.0% |
| !! | AAGCATTGGTTACGAGCCCA+CGG | + | 32477:22261-22280 | MS.gene061182:intergenic | 50.0% |
| !! | ATCAGCTCTGGCCCTTTTAG+AGG | + | 32477:18631-18650 | MS.gene061182:intergenic | 50.0% |
| !! | GGTGCAGAAAGCACTGCAAA+AGG | - | 32477:21990-22009 | MS.gene061182:intron | 50.0% |
| !! | GTCCTGCAGGAAGTATTCCA+GGG | + | 32477:19952-19971 | MS.gene061182:intergenic | 50.0% |
| !! | TCAGCTCTGGCCCTTTTAGA+GGG | + | 32477:18630-18649 | MS.gene061182:intergenic | 50.0% |
| AAAGGGCCAGAGCTGATCAC+AGG | - | 32477:18634-18653 | MS.gene061182:intron | 55.0% | |
| AAGGGAATGGACCCTTGAGG+GGG | - | 32477:20766-20785 | MS.gene061182:CDS | 55.0% | |
| AAGTGCGCCGTTTCATAGCC+AGG | - | 32477:18939-18958 | MS.gene061182:intron | 55.0% | |
| AGCCCTGGAATACTTCCTGC+AGG | - | 32477:19947-19966 | MS.gene061182:intron | 55.0% | |
| AGCGAGTCCGAAGATGCATC+TGG | - | 32477:21464-21483 | MS.gene061182:intron | 55.0% | |
| AGGACGACTGCCGAGATACA+AGG | - | 32477:19967-19986 | MS.gene061182:intron | 55.0% | |
| AGGGTCCATTCCCTTGTGAC+TGG | + | 32477:20761-20780 | MS.gene061182:intergenic | 55.0% | |
| ATCCGACACAGACGAGGATG+AGG | - | 32477:17702-17721 | MS.gene061182:CDS | 55.0% | |
| CAAGGGAATGGACCCTTGAG+GGG | - | 32477:20765-20784 | MS.gene061182:CDS | 55.0% | |
| CACAAGGGAATGGACCCTTG+AGG | - | 32477:20763-20782 | MS.gene061182:CDS | 55.0% | |
| CTCACTCTTCAAGAGAGCCC+TGG | - | 32477:19932-19951 | MS.gene061182:intron | 55.0% | |
| CTGATTGACTGTGCTCGACC+TGG | - | 32477:20010-20029 | MS.gene061182:CDS | 55.0% | |
| GCTGCTGCCAATCCAATTGG+AGG | - | 32477:21039-21058 | MS.gene061182:CDS | 55.0% | |
| GCTTATGCTCTGCTGCTCCA+TGG | + | 32477:20968-20987 | MS.gene061182:intergenic | 55.0% | |
| GGAGTTGTAACCAGACGCTC+TGG | - | 32477:19471-19490 | MS.gene061182:CDS | 55.0% | |
| GTAAGGACCTCTGGGTCAGT+TGG | + | 32477:21494-21513 | MS.gene061182:intergenic | 55.0% | |
| TCGCAAATCCGACACAGACG+AGG | - | 32477:17696-17715 | MS.gene061182:CDS | 55.0% | |
| TCGCTGTCGAGGGGATATTC+CGG | - | 32477:17663-17682 | MS.gene061182:CDS | 55.0% | |
| TCTGCTGCTCCATGGCTTCA+TGG | + | 32477:20960-20979 | MS.gene061182:intergenic | 55.0% | |
| TTGGGCAAAGACCCCCGAAT+TGG | - | 32477:20294-20313 | MS.gene061182:intron | 55.0% | |
| ! | GCCCTTGTTCTAGCTGACAG+AGG | - | 32477:20791-20810 | MS.gene061182:CDS | 55.0% |
| ! | GTCTGAGATGCATTCGCGCA+TGG | + | 32477:21894-21913 | MS.gene061182:intergenic | 55.0% |
| !! | CGTCCTGCAGGAAGTATTCC+AGG | + | 32477:19953-19972 | MS.gene061182:intergenic | 55.0% |
| AACAAGGGCTCCCCCCTCAA+GGG | + | 32477:20780-20799 | MS.gene061182:intergenic | 60.0% | |
| AGCAGAAGCCCCTTTGCCAG+TGG | + | 32477:20708-20727 | MS.gene061182:intergenic | 60.0% | |
| AGGGAATGGACCCTTGAGGG+GGG | - | 32477:20767-20786 | MS.gene061182:CDS | 60.0% | |
| GGCAAAGGGGCTTCTGCTGT+GGG | - | 32477:20710-20729 | MS.gene061182:CDS | 60.0% | |
| TATCTCGGCAGTCGTCCTGC+AGG | + | 32477:19965-19984 | MS.gene061182:intergenic | 60.0% | |
| TGCATCTTCGGACTCGCTCG+CGG | + | 32477:21462-21481 | MS.gene061182:intergenic | 60.0% | |
| TGGCAAAGGGGCTTCTGCTG+TGG | - | 32477:20709-20728 | MS.gene061182:CDS | 60.0% | |
| TGGCATGCCAACTGACCCAG+AGG | - | 32477:21484-21503 | MS.gene061182:intron | 60.0% | |
| ! | GGGGAAAACTCCAGAGCGTC+TGG | + | 32477:19484-19503 | MS.gene061182:intergenic | 60.0% |
| GAACAAGGGCTCCCCCCTCA+AGG | + | 32477:20781-20800 | MS.gene061182:intergenic | 65.0% | |
| CGCAGTACGACCCCCGTACC+CGG | - | 32477:17743-17762 | MS.gene061182:CDS | 70.0% | |
| GGTACGGGGGTCGTACTGCG+TGG | + | 32477:17743-17762 | MS.gene061182:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 32477 | gene | 17657 | 22360 | 17657 | ID=MS.gene061182 |
| 32477 | mRNA | 17657 | 22360 | 17657 | ID=MS.gene061182.t1;Parent=MS.gene061182 |
| 32477 | exon | 22204 | 22360 | 22204 | ID=MS.gene061182.t1.exon1;Parent=MS.gene061182.t1 |
| 32477 | CDS | 22204 | 22360 | 22204 | ID=cds.MS.gene061182.t1;Parent=MS.gene061182.t1 |
| 32477 | exon | 22032 | 22086 | 22032 | ID=MS.gene061182.t1.exon2;Parent=MS.gene061182.t1 |
| 32477 | CDS | 22032 | 22086 | 22032 | ID=cds.MS.gene061182.t1;Parent=MS.gene061182.t1 |
| 32477 | exon | 21244 | 21413 | 21244 | ID=MS.gene061182.t1.exon3;Parent=MS.gene061182.t1 |
| 32477 | CDS | 21244 | 21413 | 21244 | ID=cds.MS.gene061182.t1;Parent=MS.gene061182.t1 |
| 32477 | exon | 20965 | 21154 | 20965 | ID=MS.gene061182.t1.exon4;Parent=MS.gene061182.t1 |
| 32477 | CDS | 20965 | 21154 | 20965 | ID=cds.MS.gene061182.t1;Parent=MS.gene061182.t1 |
| 32477 | exon | 20664 | 20883 | 20664 | ID=MS.gene061182.t1.exon5;Parent=MS.gene061182.t1 |
| 32477 | CDS | 20664 | 20883 | 20664 | ID=cds.MS.gene061182.t1;Parent=MS.gene061182.t1 |
| 32477 | exon | 20373 | 20580 | 20373 | ID=MS.gene061182.t1.exon6;Parent=MS.gene061182.t1 |
| 32477 | CDS | 20373 | 20580 | 20373 | ID=cds.MS.gene061182.t1;Parent=MS.gene061182.t1 |
| 32477 | exon | 19975 | 20109 | 19975 | ID=MS.gene061182.t1.exon7;Parent=MS.gene061182.t1 |
| 32477 | CDS | 19975 | 20109 | 19975 | ID=cds.MS.gene061182.t1;Parent=MS.gene061182.t1 |
| 32477 | exon | 19764 | 19883 | 19764 | ID=MS.gene061182.t1.exon8;Parent=MS.gene061182.t1 |
| 32477 | CDS | 19764 | 19883 | 19764 | ID=cds.MS.gene061182.t1;Parent=MS.gene061182.t1 |
| 32477 | exon | 19438 | 19610 | 19438 | ID=MS.gene061182.t1.exon9;Parent=MS.gene061182.t1 |
| 32477 | CDS | 19438 | 19610 | 19438 | ID=cds.MS.gene061182.t1;Parent=MS.gene061182.t1 |
| 32477 | exon | 19159 | 19347 | 19159 | ID=MS.gene061182.t1.exon10;Parent=MS.gene061182.t1 |
| 32477 | CDS | 19159 | 19347 | 19159 | ID=cds.MS.gene061182.t1;Parent=MS.gene061182.t1 |
| 32477 | exon | 18953 | 19069 | 18953 | ID=MS.gene061182.t1.exon11;Parent=MS.gene061182.t1 |
| 32477 | CDS | 18953 | 19069 | 18953 | ID=cds.MS.gene061182.t1;Parent=MS.gene061182.t1 |
| 32477 | exon | 18726 | 18810 | 18726 | ID=MS.gene061182.t1.exon12;Parent=MS.gene061182.t1 |
| 32477 | CDS | 18726 | 18810 | 18726 | ID=cds.MS.gene061182.t1;Parent=MS.gene061182.t1 |
| 32477 | exon | 18512 | 18649 | 18512 | ID=MS.gene061182.t1.exon13;Parent=MS.gene061182.t1 |
| 32477 | CDS | 18512 | 18649 | 18512 | ID=cds.MS.gene061182.t1;Parent=MS.gene061182.t1 |
| 32477 | exon | 18289 | 18414 | 18289 | ID=MS.gene061182.t1.exon14;Parent=MS.gene061182.t1 |
| 32477 | CDS | 18289 | 18414 | 18289 | ID=cds.MS.gene061182.t1;Parent=MS.gene061182.t1 |
| 32477 | exon | 18006 | 18188 | 18006 | ID=MS.gene061182.t1.exon15;Parent=MS.gene061182.t1 |
| 32477 | CDS | 18006 | 18188 | 18006 | ID=cds.MS.gene061182.t1;Parent=MS.gene061182.t1 |
| 32477 | exon | 17657 | 17818 | 17657 | ID=MS.gene061182.t1.exon16;Parent=MS.gene061182.t1 |
| 32477 | CDS | 17657 | 17818 | 17657 | ID=cds.MS.gene061182.t1;Parent=MS.gene061182.t1 |
| Gene Sequence |
| Protein sequence |
