Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061189.t1 | XP_003616539.1 | 96.2 | 213 | 6 | 2 | 1 | 213 | 1 | 211 | 2.30E-115 | 424.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061189.t1 | G7KBU1 | 96.2 | 213 | 6 | 2 | 1 | 213 | 1 | 211 | 1.6e-115 | 424.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene061189 | MS.gene071315 | 0.801518 | 8.67E-49 | -1.69E-46 |
| MS.gene061189 | MS.gene071316 | 0.806384 | 8.45E-50 | -1.69E-46 |
| MS.gene061189 | MS.gene97762 | 0.804946 | 1.69E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061189.t1 | MTR_5g081560 | 96.244 | 213 | 6 | 2 | 1 | 213 | 1 | 211 | 3.31e-151 | 418 |
| MS.gene061189.t1 | MTR_3g069730 | 55.963 | 218 | 69 | 5 | 1 | 213 | 22 | 217 | 4.73e-69 | 210 |
| MS.gene061189.t1 | MTR_7g065920 | 53.202 | 203 | 87 | 5 | 13 | 213 | 38 | 234 | 5.47e-62 | 193 |
| MS.gene061189.t1 | MTR_3g069760 | 53.205 | 156 | 60 | 4 | 59 | 209 | 46 | 193 | 6.01e-41 | 138 |
| MS.gene061189.t1 | MTR_4g086500 | 38.333 | 180 | 79 | 5 | 44 | 211 | 150 | 309 | 2.24e-29 | 111 |
| MS.gene061189.t1 | MTR_2g016520 | 38.686 | 137 | 65 | 3 | 87 | 211 | 153 | 282 | 3.74e-29 | 110 |
| MS.gene061189.t1 | MTR_8g086550 | 37.778 | 180 | 80 | 5 | 44 | 211 | 150 | 309 | 4.19e-28 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061189.t1 | AT5G05830 | 63.580 | 162 | 54 | 3 | 54 | 213 | 45 | 203 | 2.83e-68 | 208 |
| MS.gene061189.t1 | AT5G01070 | 53.077 | 130 | 58 | 1 | 87 | 213 | 75 | 204 | 6.38e-42 | 141 |
| MS.gene061189.t1 | AT2G37950 | 50.769 | 130 | 56 | 3 | 87 | 213 | 81 | 205 | 3.30e-39 | 134 |
| MS.gene061189.t1 | AT5G59000 | 43.671 | 158 | 46 | 4 | 89 | 211 | 80 | 229 | 4.66e-33 | 119 |
| MS.gene061189.t1 | AT2G34200 | 44.944 | 89 | 38 | 2 | 87 | 168 | 99 | 183 | 3.70e-17 | 77.0 |
| MS.gene061189.t1 | AT2G34200 | 44.944 | 89 | 38 | 2 | 87 | 168 | 99 | 183 | 3.70e-17 | 77.0 |
Find 44 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGCTTGGTTCAAGATTAA+AGG | 0.278430 | 5.1:+63744349 | MS.gene061189:CDS |
| TAGGATTTGTCATCTTAGTA+TGG | 0.302408 | 5.1:+63744240 | MS.gene061189:CDS |
| TTCTGATGTTAAGGTGCATT+TGG | 0.316270 | 5.1:+63744198 | MS.gene061189:CDS |
| GAATTTCCTTCTAGCATGTA+TGG | 0.346946 | 5.1:+63746546 | MS.gene061189:CDS |
| GATATGACAAATCATGAATC+TGG | 0.374563 | 5.1:+63744262 | MS.gene061189:CDS |
| ATAAGGTGGAGAGGGATTGT+AGG | 0.391162 | 5.1:+63744221 | MS.gene061189:CDS |
| GATCAAAGGTGTGAGATTGT+AGG | 0.417863 | 5.1:+63744079 | MS.gene061189:CDS |
| TGGTTTAGTTTCTGATGTTA+AGG | 0.429158 | 5.1:+63744189 | MS.gene061189:CDS |
| TTTGATCTTCCTCATTTAAC+CGG | 0.432004 | 5.1:-63744063 | None:intergenic |
| AGGTCCAGTTGGCGGTATAA+TGG | 0.433903 | 5.1:-63746476 | None:intergenic |
| ATAAGCATTGTGCTGAGGCT+TGG | 0.438291 | 5.1:+63744335 | MS.gene061189:CDS |
| CCCTCCATTATACCGCCAAC+TGG | 0.440487 | 5.1:+63746472 | MS.gene061189:CDS |
| ATGTTCTGTGGAGTTGGATC+TGG | 0.449506 | 5.1:+63744159 | MS.gene061189:CDS |
| CGAGTTTCTGATGGCGGTGA+AGG | 0.454167 | 5.1:-63746496 | None:intergenic |
| TTTCAAAATGCAGGTAAATG+AGG | 0.481861 | 5.1:+63743964 | None:intergenic |
| TCATGAATCTGGAATTCCTA+TGG | 0.482383 | 5.1:+63744273 | MS.gene061189:CDS |
| TCTGGAATTCCTATGGAGCT+TGG | 0.510778 | 5.1:+63744280 | MS.gene061189:CDS |
| TGTTAAGGTGCATTTGGATA+AGG | 0.511468 | 5.1:+63744204 | MS.gene061189:CDS |
| TTCCTCATTTAACCGGTCAC+CGG | 0.516076 | 5.1:-63744056 | None:intergenic |
| GTGGAGTTGGATCTGGATGA+TGG | 0.516461 | 5.1:+63744166 | MS.gene061189:CDS |
| ATCAGAATGTTCTGTGGAGT+TGG | 0.519699 | 5.1:+63744153 | MS.gene061189:CDS |
| GGCGGTGAAGGTCCAGTTGG+CGG | 0.522880 | 5.1:-63746484 | None:intergenic |
| GCATTTGGATAAGGTGGAGA+GGG | 0.524811 | 5.1:+63744213 | MS.gene061189:CDS |
| TAAGGTGCATTTGGATAAGG+TGG | 0.527254 | 5.1:+63744207 | MS.gene061189:CDS |
| CATTTGAACTTCCATAGCAC+CGG | 0.554330 | 5.1:-63746422 | None:intergenic |
| GATGTTCTAACTCCGGTGAC+CGG | 0.563674 | 5.1:+63744044 | MS.gene061189:CDS |
| CTCCGGTGACCGGTTAAATG+AGG | 0.569406 | 5.1:+63744054 | MS.gene061189:CDS |
| ACACAATGTAGCCGGTGCTA+TGG | 0.576578 | 5.1:+63746411 | MS.gene061189:CDS |
| TCCAGTTGGCGGTATAATGG+AGG | 0.577296 | 5.1:-63746473 | None:intergenic |
| TAGAACATCGTTCATTACTC+CGG | 0.582687 | 5.1:-63744030 | None:intergenic |
| TCAATTGCACACAATGTAGC+CGG | 0.585989 | 5.1:+63746403 | MS.gene061189:CDS |
| TGCTCATAAGCATTGTGCTG+AGG | 0.590807 | 5.1:+63744330 | MS.gene061189:CDS |
| TGCATTTGGATAAGGTGGAG+AGG | 0.590996 | 5.1:+63744212 | MS.gene061189:CDS |
| GATGGCGGTGAAGGTCCAGT+TGG | 0.603948 | 5.1:-63746487 | None:intergenic |
| AATGAACGATGTTCTAACTC+CGG | 0.609785 | 5.1:+63744037 | MS.gene061189:CDS |
| GAGTTGGATCTGGATGATGG+TGG | 0.610782 | 5.1:+63744169 | MS.gene061189:CDS |
| AAATTTCGAGTTTCTGATGG+CGG | 0.611712 | 5.1:-63746502 | None:intergenic |
| TAGACAACAATGTATGTCAC+CGG | 0.620225 | 5.1:+63744011 | MS.gene061189:CDS |
| CCAGTTGGCGGTATAATGGA+GGG | 0.621956 | 5.1:-63746472 | None:intergenic |
| ATCTGAATCAGAATGTTCTG+TGG | 0.636575 | 5.1:+63744147 | MS.gene061189:CDS |
| AAGTTACACAGGAATTCAAG+AGG | 0.657142 | 5.1:-63746611 | None:intergenic |
| AACAGAACTTGTGAAATCTG+CGG | 0.661079 | 5.1:+63746379 | MS.gene061189:intron |
| AGTTACACAGGAATTCAAGA+GGG | 0.673281 | 5.1:-63746610 | None:intergenic |
| GGTTAAATGAGGAAGATCAA+AGG | 0.674298 | 5.1:+63744065 | MS.gene061189:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTGCATATTAAAAAAA+TGG | - | chr5.1:63745628-63745647 | None:intergenic | 10.0% |
| !!! | TATTTTAGTTAACATTAATT+GGG | + | chr5.1:63745858-63745877 | MS.gene061189:intron | 10.0% |
| !!! | TTATTTTAGTTAACATTAAT+TGG | + | chr5.1:63745857-63745876 | MS.gene061189:intron | 10.0% |
| !! | GAAATACATTATTATAAACA+GGG | + | chr5.1:63745212-63745231 | MS.gene061189:intron | 15.0% |
| !! | TGAAATACATTATTATAAAC+AGG | + | chr5.1:63745211-63745230 | MS.gene061189:intron | 15.0% |
| !!! | AATATATTGATTGAATGTAA+AGG | + | chr5.1:63746176-63746195 | MS.gene061189:intron | 15.0% |
| !! | AATGGTTGAAAGAAAAATAT+TGG | + | chr5.1:63745245-63745264 | MS.gene061189:intron | 20.0% |
| !! | ACATATCAACTAAAATATAG+TGG | - | chr5.1:63744450-63744469 | None:intergenic | 20.0% |
| !! | ATTTACAACTTTATTCCAAA+AGG | - | chr5.1:63744399-63744418 | None:intergenic | 20.0% |
| !! | TTTACAACTTTATTCCAAAA+GGG | - | chr5.1:63744398-63744417 | None:intergenic | 20.0% |
| !!! | ATGTTTTTGCAAAAATGATT+TGG | + | chr5.1:63744303-63744322 | MS.gene061189:CDS | 20.0% |
| !!! | TTCTTCTTTTGTAATCAAAA+AGG | + | chr5.1:63745165-63745184 | MS.gene061189:intron | 20.0% |
| ! | AACAAAAATCTTAAGACATC+CGG | - | chr5.1:63744876-63744895 | None:intergenic | 25.0% |
| ! | AAGTCAAATAGCTTAAGATA+AGG | - | chr5.1:63745033-63745052 | None:intergenic | 25.0% |
| ! | AATAGCTTAAGATAAGGTAA+AGG | - | chr5.1:63745027-63745046 | None:intergenic | 25.0% |
| ! | ATCTACAATTTCATTCAATG+TGG | - | chr5.1:63744508-63744527 | None:intergenic | 25.0% |
| ! | CATTATTATAAACAGGGTTT+AGG | + | chr5.1:63745218-63745237 | MS.gene061189:intron | 25.0% |
| ! | TCAAAAATCAAGATACGATA+CGG | + | chr5.1:63745548-63745567 | MS.gene061189:intron | 25.0% |
| ! | TTATGTAATGATCAAACTAC+AGG | + | chr5.1:63746147-63746166 | MS.gene061189:intron | 25.0% |
| !! | ACAATGTATAAGAGTATGTT+TGG | + | chr5.1:63744533-63744552 | MS.gene061189:intron | 25.0% |
| !! | CTCTTATGTTTTTCTTTTTG+TGG | + | chr5.1:63744977-63744996 | MS.gene061189:intron | 25.0% |
| !! | TAACATTAATTGGGAAGTAT+TGG | + | chr5.1:63745867-63745886 | MS.gene061189:intron | 25.0% |
| !! | TTCTTTTTGTGGAAAAATTG+TGG | + | chr5.1:63744988-63745007 | MS.gene061189:intron | 25.0% |
| !! | TTGAATAAAGTGTCAAACTT+AGG | - | chr5.1:63746289-63746308 | None:intergenic | 25.0% |
| !!! | AAGATTTTTGTTTGAAGATG+CGG | + | chr5.1:63744884-63744903 | MS.gene061189:intron | 25.0% |
| !!! | AGCTAGAAATATTAGCTTTT+AGG | + | chr5.1:63744704-63744723 | MS.gene061189:intron | 25.0% |
| !!! | TATGTTTCGAATACTTTTTG+AGG | + | chr5.1:63745385-63745404 | MS.gene061189:intron | 25.0% |
| !!! | TTTTAGGTAGAATTGATTTG+TGG | + | chr5.1:63744720-63744739 | MS.gene061189:intron | 25.0% |
| AAAAAGCCATGATATGACAA+AGG | - | chr5.1:63746578-63746597 | None:intergenic | 30.0% | |
| AAACAAAAGAAACCAGTCAT+AGG | + | chr5.1:63745654-63745673 | MS.gene061189:intron | 30.0% | |
| AAACAGGGTTTAGGTAATAA+TGG | + | chr5.1:63745227-63745246 | MS.gene061189:intron | 30.0% | |
| ACAAACATGGAACTAAACAT+AGG | + | chr5.1:63744830-63744849 | MS.gene061189:intron | 30.0% | |
| ACTATGAAATGTCTTGATAG+TGG | + | chr5.1:63745129-63745148 | MS.gene061189:intron | 30.0% | |
| AGCAAATGAATATACTAAGG+AGG | - | chr5.1:63745073-63745092 | None:intergenic | 30.0% | |
| GATATGACAAATCATGAATC+TGG | + | chr5.1:63744262-63744281 | MS.gene061189:CDS | 30.0% | |
| GCCAAATACTTTGGATAATA+CGG | + | chr5.1:63745093-63745112 | MS.gene061189:intron | 30.0% | |
| GTTTGATCATTACATAAACG+CGG | - | chr5.1:63746144-63746163 | None:intergenic | 30.0% | |
| TAAAGGAGTTGAAGTTTGAA+AGG | + | chr5.1:63746193-63746212 | MS.gene061189:intron | 30.0% | |
| TAGGATTTGTCATCTTAGTA+TGG | + | chr5.1:63744240-63744259 | MS.gene061189:CDS | 30.0% | |
| TGGATATAGTATAACACCTA+TGG | - | chr5.1:63745772-63745791 | None:intergenic | 30.0% | |
| TTGTGGAAAAATTGTGGATA+AGG | + | chr5.1:63744994-63745013 | MS.gene061189:intron | 30.0% | |
| TTTGACTATAGCAACTAGTA+AGG | + | chr5.1:63745448-63745467 | MS.gene061189:intron | 30.0% | |
| TTTGATCTTCCTCATTTAAC+CGG | - | chr5.1:63744066-63744085 | None:intergenic | 30.0% | |
| ! | ACCGTATTATCCAAAGTATT+TGG | - | chr5.1:63745097-63745116 | None:intergenic | 30.0% |
| ! | ACTAACCCAAACATGATTTT+GGG | + | chr5.1:63744803-63744822 | MS.gene061189:intron | 30.0% |
| ! | CAAGTTGAATCATTTGATGT+TGG | + | chr5.1:63746261-63746280 | MS.gene061189:intron | 30.0% |
| ! | CATCAGAAACTCGAAATTTT+TGG | + | chr5.1:63746506-63746525 | MS.gene061189:CDS | 30.0% |
| ! | GGTGTTATACTATATCCAAA+AGG | + | chr5.1:63745774-63745793 | MS.gene061189:intron | 30.0% |
| ! | TGGTTTAGTTTCTGATGTTA+AGG | + | chr5.1:63744189-63744208 | MS.gene061189:CDS | 30.0% |
| ! | TTTTTGCCTTTGTCATATCA+TGG | + | chr5.1:63746569-63746588 | MS.gene061189:CDS | 30.0% |
| !! | CAAAAATTTCGAGTTTCTGA+TGG | - | chr5.1:63746508-63746527 | None:intergenic | 30.0% |
| !!! | TGAGTATAGTGCTTCTTTTT+TGG | - | chr5.1:63745828-63745847 | None:intergenic | 30.0% |
| AACAGAACTTGTGAAATCTG+CGG | + | chr5.1:63746379-63746398 | MS.gene061189:intron | 35.0% | |
| AAGTATGCTTGAACACTAGT+TGG | - | chr5.1:63745300-63745319 | None:intergenic | 35.0% | |
| AATGAACGATGTTCTAACTC+CGG | + | chr5.1:63744037-63744056 | MS.gene061189:CDS | 35.0% | |
| AGAGAATCCTAAAACACTCT+AGG | - | chr5.1:63744961-63744980 | None:intergenic | 35.0% | |
| AGTATGCTTGAACACTAGTT+GGG | - | chr5.1:63745299-63745318 | None:intergenic | 35.0% | |
| ATCTGAATCAGAATGTTCTG+TGG | + | chr5.1:63744147-63744166 | MS.gene061189:CDS | 35.0% | |
| CAAAAACCATACATGCTAGA+AGG | - | chr5.1:63746555-63746574 | None:intergenic | 35.0% | |
| GAAGTGAGAGATACATATAC+CGG | + | chr5.1:63744854-63744873 | MS.gene061189:intron | 35.0% | |
| GAATTTCCTTCTAGCATGTA+TGG | + | chr5.1:63746546-63746565 | MS.gene061189:CDS | 35.0% | |
| GGCAGCAAATGAATATACTA+AGG | - | chr5.1:63745076-63745095 | None:intergenic | 35.0% | |
| GGTTAAATGAGGAAGATCAA+AGG | + | chr5.1:63744065-63744084 | MS.gene061189:CDS | 35.0% | |
| GTGGTTGTTCGTAGTATTAT+GGG | + | chr5.1:63744930-63744949 | MS.gene061189:intron | 35.0% | |
| TAGAACATCGTTCATTACTC+CGG | - | chr5.1:63744033-63744052 | None:intergenic | 35.0% | |
| TAGACAACAATGTATGTCAC+CGG | + | chr5.1:63744011-63744030 | MS.gene061189:CDS | 35.0% | |
| TGTGGTTGTTCGTAGTATTA+TGG | + | chr5.1:63744929-63744948 | MS.gene061189:intron | 35.0% | |
| TGTTAAGGTGCATTTGGATA+AGG | + | chr5.1:63744204-63744223 | MS.gene061189:CDS | 35.0% | |
| TTCCTCCCAAAATCATGTTT+GGG | - | chr5.1:63744811-63744830 | None:intergenic | 35.0% | |
| TTCTGATGTTAAGGTGCATT+TGG | + | chr5.1:63744198-63744217 | MS.gene061189:CDS | 35.0% | |
| ! | AAATCGATTCACTTCTGTGA+CGG | - | chr5.1:63744564-63744583 | None:intergenic | 35.0% |
| ! | AGCACTAACAATGTTCCTTT+TGG | - | chr5.1:63745792-63745811 | None:intergenic | 35.0% |
| ! | AGTACTAGTATACACCCTTT+TGG | + | chr5.1:63744381-63744400 | MS.gene061189:intron | 35.0% |
| ! | GACTAACCCAAACATGATTT+TGG | + | chr5.1:63744802-63744821 | MS.gene061189:intron | 35.0% |
| ! | GGAGTGTCTGAAAAACAAAA+AGG | + | chr5.1:63744100-63744119 | MS.gene061189:CDS | 35.0% |
| ! | TCATGAATCTGGAATTCCTA+TGG | + | chr5.1:63744273-63744292 | MS.gene061189:CDS | 35.0% |
| ! | TCATTTGCTGCCAAATACTT+TGG | + | chr5.1:63745084-63745103 | MS.gene061189:intron | 35.0% |
| ! | TGATACGTATCGAGAAGTAT+CGG | + | chr5.1:63745928-63745947 | MS.gene061189:intron | 35.0% |
| !! | AAATTTCGAGTTTCTGATGG+CGG | - | chr5.1:63746505-63746524 | None:intergenic | 35.0% |
| !! | TATCTCAAAAAGAGCACCAT+AGG | + | chr5.1:63745753-63745772 | MS.gene061189:intron | 35.0% |
| !!! | AGAAACTCGAAATTTTTGGC+AGG | + | chr5.1:63746510-63746529 | MS.gene061189:CDS | 35.0% |
| !!! | CGTCATCCATTTTGAAGTAT+CGG | + | chr5.1:63746056-63746075 | MS.gene061189:intron | 35.0% |
| !!! | GAAACTCGAAATTTTTGGCA+GGG | + | chr5.1:63746511-63746530 | MS.gene061189:CDS | 35.0% |
| !!! | GTCATCCATTTTGAAGTATC+GGG | + | chr5.1:63746057-63746076 | MS.gene061189:intron | 35.0% |
| !!! | TCATCCATTTTGAAGTATCG+GGG | + | chr5.1:63746058-63746077 | MS.gene061189:intron | 35.0% |
| AACACTAGTTGGGATGAGAA+TGG | - | chr5.1:63745289-63745308 | None:intergenic | 40.0% | |
| ACACTAGTTGGGATGAGAAT+GGG | - | chr5.1:63745288-63745307 | None:intergenic | 40.0% | |
| ATACTCTCCTGATACGTATC+GGG | + | chr5.1:63745988-63746007 | MS.gene061189:intron | 40.0% | |
| ATCAGAATGTTCTGTGGAGT+TGG | + | chr5.1:63744153-63744172 | MS.gene061189:CDS | 40.0% | |
| CAAAAACATCCAAGCTCCAT+AGG | - | chr5.1:63744292-63744311 | None:intergenic | 40.0% | |
| CATTCTTCCTGTCAATTGTG+TGG | + | chr5.1:63744911-63744930 | MS.gene061189:intron | 40.0% | |
| CATTTGAACTTCCATAGCAC+CGG | - | chr5.1:63746425-63746444 | None:intergenic | 40.0% | |
| GATACTCTCCTGATACGTAT+CGG | + | chr5.1:63745987-63746006 | MS.gene061189:intron | 40.0% | |
| GATACTTCTCGATACGTATC+AGG | - | chr5.1:63745929-63745948 | None:intergenic | 40.0% | |
| GGAATCATTTCTGCAACTGA+AGG | + | chr5.1:63744746-63744765 | MS.gene061189:intron | 40.0% | |
| GTTCCTCCCAAAATCATGTT+TGG | - | chr5.1:63744812-63744831 | None:intergenic | 40.0% | |
| TAAGGTGCATTTGGATAAGG+TGG | + | chr5.1:63744207-63744226 | MS.gene061189:CDS | 40.0% | |
| TATCGGTGCAGGATAACTAT+CGG | + | chr5.1:63745896-63745915 | MS.gene061189:intron | 40.0% | |
| TATCGTATCGTATCCGTATC+CGG | - | chr5.1:63745499-63745518 | None:intergenic | 40.0% | |
| TCAATTGCACACAATGTAGC+CGG | + | chr5.1:63746403-63746422 | MS.gene061189:CDS | 40.0% | |
| TCATTACATAAACGCGGACT+TGG | - | chr5.1:63746138-63746157 | None:intergenic | 40.0% | |
| ! | AACCCAAACATGATTTTGGG+AGG | + | chr5.1:63744806-63744825 | MS.gene061189:intron | 40.0% |
| ! | GAGGCTTGGTTCAAGATTAA+AGG | + | chr5.1:63744349-63744368 | MS.gene061189:CDS | 40.0% |
| ! | GATCAAAGGTGTGAGATTGT+AGG | + | chr5.1:63744079-63744098 | MS.gene061189:CDS | 40.0% |
| ! | TGATACGTATCGGGAAGTAT+CGG | + | chr5.1:63745997-63746016 | MS.gene061189:intron | 40.0% |
| !! | ATTTTCCCGTATCGACGTAT+CGG | - | chr5.1:63745527-63745546 | None:intergenic | 40.0% |
| !! | GATTTTGGGAGGAACAAACA+TGG | + | chr5.1:63744817-63744836 | MS.gene061189:intron | 40.0% |
| !! | GGATGATCCTAGAGTGTTTT+AGG | + | chr5.1:63744951-63744970 | MS.gene061189:intron | 40.0% |
| !! | GGTAGAATTGATTTGTGGAC+TGG | + | chr5.1:63744725-63744744 | MS.gene061189:intron | 40.0% |
| !!! | GAAATTTTTGGCAGGGACAT+CGG | + | chr5.1:63746518-63746537 | MS.gene061189:CDS | 40.0% |
| ATAAGGTGGAGAGGGATTGT+AGG | + | chr5.1:63744221-63744240 | MS.gene061189:CDS | 45.0% | |
| ATCGTATCGTATCCGTATCC+GGG | - | chr5.1:63745498-63745517 | None:intergenic | 45.0% | |
| ATGTTCTGTGGAGTTGGATC+TGG | + | chr5.1:63744159-63744178 | MS.gene061189:CDS | 45.0% | |
| CGAACAACCACACAATTGAC+AGG | - | chr5.1:63744921-63744940 | None:intergenic | 45.0% | |
| GAAGCCCCGATACTTCAAAA+TGG | - | chr5.1:63746065-63746084 | None:intergenic | 45.0% | |
| GAGTATTTACCTGTGAAGCC+CGG | + | chr5.1:63745477-63745496 | MS.gene061189:intron | 45.0% | |
| GATACTTCCCGATACGTATC+AGG | - | chr5.1:63745998-63746017 | None:intergenic | 45.0% | |
| GCATTTGGATAAGGTGGAGA+GGG | + | chr5.1:63744213-63744232 | MS.gene061189:CDS | 45.0% | |
| TGCATTTGGATAAGGTGGAG+AGG | + | chr5.1:63744212-63744231 | MS.gene061189:CDS | 45.0% | |
| TTCCTCATTTAACCGGTCAC+CGG | - | chr5.1:63744059-63744078 | None:intergenic | 45.0% | |
| ! | ATAAGCATTGTGCTGAGGCT+TGG | + | chr5.1:63744335-63744354 | MS.gene061189:CDS | 45.0% |
| ! | TCTGGAATTCCTATGGAGCT+TGG | + | chr5.1:63744280-63744299 | MS.gene061189:CDS | 45.0% |
| ! | TGCTCATAAGCATTGTGCTG+AGG | + | chr5.1:63744330-63744349 | MS.gene061189:CDS | 45.0% |
| !! | GATACGTATCGGGAAGTATC+GGG | + | chr5.1:63745998-63746017 | MS.gene061189:intron | 45.0% |
| !! | TAATTGGGAAGTATTGGCGC+AGG | + | chr5.1:63745873-63745892 | MS.gene061189:intron | 45.0% |
| !! | TGAAGTATCGGGGCTTCAAA+AGG | + | chr5.1:63746068-63746087 | MS.gene061189:intron | 45.0% |
| !! | AAAAAATAAAATTTAATCTT+CGG | + | chr5.1:63745965-63745984 | MS.gene061189:intron | 5.0% |
| AGGTCCAGTTGGCGGTATAA+TGG | - | chr5.1:63746479-63746498 | None:intergenic | 50.0% | |
| ATGTGCTACGAGCCTATGAC+TGG | - | chr5.1:63745669-63745688 | None:intergenic | 50.0% | |
| GATGTTCTAACTCCGGTGAC+CGG | + | chr5.1:63744044-63744063 | MS.gene061189:CDS | 50.0% | |
| GTGGAGTTGGATCTGGATGA+TGG | + | chr5.1:63744166-63744185 | MS.gene061189:CDS | 50.0% | |
| TCCAGTTGGCGGTATAATGG+AGG | - | chr5.1:63746476-63746495 | None:intergenic | 50.0% | |
| TTACCTGTGAAGCCCGGATA+CGG | + | chr5.1:63745483-63745502 | MS.gene061189:intron | 50.0% | |
| ! | ACACAATGTAGCCGGTGCTA+TGG | + | chr5.1:63746411-63746430 | MS.gene061189:CDS | 50.0% |
| ! | ACTGCACCGATACGTCGATA+CGG | + | chr5.1:63745518-63745537 | MS.gene061189:intron | 50.0% |
| ! | CCAGTTGGCGGTATAATGGA+GGG | - | chr5.1:63746475-63746494 | None:intergenic | 50.0% |
| ! | GAGTTGGATCTGGATGATGG+TGG | + | chr5.1:63744169-63744188 | MS.gene061189:CDS | 50.0% |
| !! | GGAAGTATTGGCGCAGGTAT+CGG | + | chr5.1:63745879-63745898 | MS.gene061189:intron | 50.0% |
| CCCTCCATTATACCGCCAAC+TGG | + | chr5.1:63746472-63746491 | MS.gene061189:CDS | 55.0% | |
| CTCCGGTGACCGGTTAAATG+AGG | + | chr5.1:63744054-63744073 | MS.gene061189:CDS | 55.0% | |
| TATCCGTATCCGGGCTTCAC+AGG | - | chr5.1:63745489-63745508 | None:intergenic | 55.0% | |
| TATCGGTGCAGGATACGCAG+GGG | + | chr5.1:63746025-63746044 | MS.gene061189:intron | 55.0% | |
| ! | CTGCACCGATACGTCGATAC+GGG | + | chr5.1:63745519-63745538 | MS.gene061189:intron | 55.0% |
| ! | GTATCGGTGCAGGATACGCA+GGG | + | chr5.1:63746024-63746043 | MS.gene061189:intron | 55.0% |
| !! | CGAGTTTCTGATGGCGGTGA+AGG | - | chr5.1:63746499-63746518 | None:intergenic | 55.0% |
| !! | GGGAAGTATCGGGCAGGTAT+CGG | + | chr5.1:63746008-63746027 | MS.gene061189:intron | 55.0% |
| ! | GATGGCGGTGAAGGTCCAGT+TGG | - | chr5.1:63746490-63746509 | None:intergenic | 60.0% |
| !! | ATTGGCGCAGGTATCGGTGC+AGG | + | chr5.1:63745885-63745904 | MS.gene061189:intron | 60.0% |
| !! | CGTATCGGGAAGTATCGGGC+AGG | + | chr5.1:63746002-63746021 | MS.gene061189:intron | 60.0% |
| !! | GGTATCGGTGCAGGATACGC+AGG | + | chr5.1:63746023-63746042 | MS.gene061189:intron | 60.0% |
| !! | TATCGGGCAGGTATCGGTGC+AGG | + | chr5.1:63746014-63746033 | MS.gene061189:intron | 60.0% |
| GGCGGTGAAGGTCCAGTTGG+CGG | - | chr5.1:63746487-63746506 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 63743971 | 63746618 | 63743971 | ID=MS.gene061189 |
| chr5.1 | mRNA | 63743971 | 63746618 | 63743971 | ID=MS.gene061189.t1;Parent=MS.gene061189 |
| chr5.1 | exon | 63743971 | 63744377 | 63743971 | ID=MS.gene061189.t1.exon1;Parent=MS.gene061189.t1 |
| chr5.1 | CDS | 63743971 | 63744377 | 63743971 | ID=cds.MS.gene061189.t1;Parent=MS.gene061189.t1 |
| chr5.1 | exon | 63746384 | 63746618 | 63746384 | ID=MS.gene061189.t1.exon2;Parent=MS.gene061189.t1 |
| chr5.1 | CDS | 63746384 | 63746618 | 63746384 | ID=cds.MS.gene061189.t1;Parent=MS.gene061189.t1 |
| Gene Sequence |
| Protein sequence |
