Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071315.t1 | ABN09771.1 | 98.2 | 1122 | 19 | 1 | 1 | 1121 | 124 | 1245 | 0.00E+00 | 2176 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071315.t1 | Q9LXT9 | 85.0 | 1123 | 160 | 6 | 1 | 1121 | 839 | 1955 | 0.0e+00 | 1869.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071315.t1 | G7KWP5 | 98.2 | 1122 | 19 | 1 | 1 | 1121 | 837 | 1958 | 0.0e+00 | 2176.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene071315 | 0.872767 | 2.47E-67 | -1.69E-46 |
| MS.gene049418 | MS.gene071315 | 0.825861 | 3.72E-54 | -1.69E-46 |
| MS.gene049672 | MS.gene071315 | 0.801472 | 8.86E-49 | -1.69E-46 |
| MS.gene049695 | MS.gene071315 | 0.814791 | 1.29E-51 | -1.69E-46 |
| MS.gene049697 | MS.gene071315 | 0.808142 | 3.58E-50 | -1.69E-46 |
| MS.gene049979 | MS.gene071315 | 0.801369 | 9.30E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene071315 | 0.820909 | 5.35E-53 | -1.69E-46 |
| MS.gene050194 | MS.gene071315 | 0.802851 | 4.61E-49 | -1.69E-46 |
| MS.gene050324 | MS.gene071315 | 0.816584 | 5.13E-52 | -1.69E-46 |
| MS.gene050630 | MS.gene071315 | 0.845331 | 4.34E-59 | -1.69E-46 |
| MS.gene050689 | MS.gene071315 | 0.805442 | 1.33E-49 | -1.69E-46 |
| MS.gene050806 | MS.gene071315 | 0.807899 | 4.04E-50 | -1.69E-46 |
| MS.gene050901 | MS.gene071315 | 0.807079 | 6.02E-50 | -1.69E-46 |
| MS.gene051248 | MS.gene071315 | 0.855463 | 6.21E-62 | -1.69E-46 |
| MS.gene051251 | MS.gene071315 | 0.827817 | 1.27E-54 | -1.69E-46 |
| MS.gene051263 | MS.gene071315 | 0.818298 | 2.11E-52 | -1.69E-46 |
| MS.gene051478 | MS.gene071315 | 0.805193 | 1.50E-49 | -1.69E-46 |
| MS.gene05157 | MS.gene071315 | 0.825846 | 3.75E-54 | -1.69E-46 |
| MS.gene051719 | MS.gene071315 | 0.804539 | 2.06E-49 | -1.69E-46 |
| MS.gene051720 | MS.gene071315 | 0.803097 | 4.10E-49 | -1.69E-46 |
| MS.gene051781 | MS.gene071315 | 0.810066 | 1.39E-50 | -1.69E-46 |
| MS.gene052020 | MS.gene071315 | 0.802399 | 5.72E-49 | -1.69E-46 |
| MS.gene052133 | MS.gene071315 | 0.800993 | 1.11E-48 | -1.69E-46 |
| MS.gene052611 | MS.gene071315 | 0.835184 | 1.95E-56 | -1.69E-46 |
| MS.gene052612 | MS.gene071315 | 0.820315 | 7.32E-53 | -1.69E-46 |
| MS.gene052731 | MS.gene071315 | 0.800851 | 1.19E-48 | -1.69E-46 |
| MS.gene052732 | MS.gene071315 | 0.825175 | 5.41E-54 | -1.69E-46 |
| MS.gene052879 | MS.gene071315 | 0.806317 | 8.72E-50 | -1.69E-46 |
| MS.gene052880 | MS.gene071315 | 0.801804 | 7.57E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene071315 | 0.876297 | 1.56E-68 | -1.69E-46 |
| MS.gene053174 | MS.gene071315 | 0.828311 | 9.65E-55 | -1.69E-46 |
| MS.gene053581 | MS.gene071315 | 0.805989 | 1.02E-49 | -1.69E-46 |
| MS.gene054550 | MS.gene071315 | 0.831403 | 1.70E-55 | -1.69E-46 |
| MS.gene054584 | MS.gene071315 | 0.859737 | 3.36E-63 | -1.69E-46 |
| MS.gene055465 | MS.gene071315 | 0.801566 | 8.48E-49 | -1.69E-46 |
| MS.gene055466 | MS.gene071315 | 0.817347 | 3.46E-52 | -1.69E-46 |
| MS.gene055537 | MS.gene071315 | 0.807137 | 5.85E-50 | -1.69E-46 |
| MS.gene055580 | MS.gene071315 | -0.822523 | 2.26E-53 | -1.69E-46 |
| MS.gene055890 | MS.gene071315 | 0.839803 | 1.27E-57 | -1.69E-46 |
| MS.gene055891 | MS.gene071315 | 0.820315 | 7.32E-53 | -1.69E-46 |
| MS.gene056228 | MS.gene071315 | 0.852977 | 3.24E-61 | -1.69E-46 |
| MS.gene056368 | MS.gene071315 | 0.830543 | 2.77E-55 | -1.69E-46 |
| MS.gene05638 | MS.gene071315 | 0.811962 | 5.39E-51 | -1.69E-46 |
| MS.gene056396 | MS.gene071315 | 0.826401 | 2.77E-54 | -1.69E-46 |
| MS.gene056542 | MS.gene071315 | 0.831889 | 1.29E-55 | -1.69E-46 |
| MS.gene056543 | MS.gene071315 | 0.830039 | 3.67E-55 | -1.69E-46 |
| MS.gene056545 | MS.gene071315 | 0.834672 | 2.62E-56 | -1.69E-46 |
| MS.gene056553 | MS.gene071315 | 0.832048 | 1.18E-55 | -1.69E-46 |
| MS.gene056584 | MS.gene071315 | 0.803355 | 3.63E-49 | -1.69E-46 |
| MS.gene059154 | MS.gene071315 | 0.87766 | 5.26E-69 | -1.69E-46 |
| MS.gene05978 | MS.gene071315 | 0.804666 | 1.94E-49 | -1.69E-46 |
| MS.gene059937 | MS.gene071315 | 0.800711 | 1.27E-48 | -1.69E-46 |
| MS.gene060194 | MS.gene071315 | 0.841276 | 5.24E-58 | -1.69E-46 |
| MS.gene060587 | MS.gene071315 | 0.824807 | 6.61E-54 | -1.69E-46 |
| MS.gene060884 | MS.gene071315 | 0.828193 | 1.03E-54 | -1.69E-46 |
| MS.gene060886 | MS.gene071315 | 0.838098 | 3.52E-57 | -1.69E-46 |
| MS.gene061176 | MS.gene071315 | 0.82874 | 7.60E-55 | -1.69E-46 |
| MS.gene061177 | MS.gene071315 | 0.826886 | 2.12E-54 | -1.69E-46 |
| MS.gene061178 | MS.gene071315 | 0.828318 | 9.61E-55 | -1.69E-46 |
| MS.gene061189 | MS.gene071315 | 0.801518 | 8.67E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50681 | gene | 6070 | 13730 | 6070 | ID=MS.gene071315 |
| 50681 | mRNA | 6070 | 13730 | 6070 | ID=MS.gene071315.t1;Parent=MS.gene071315 |
| 50681 | exon | 6070 | 6154 | 6070 | ID=MS.gene071315.t1.exon1;Parent=MS.gene071315.t1 |
| 50681 | CDS | 6070 | 6154 | 6070 | ID=cds.MS.gene071315.t1;Parent=MS.gene071315.t1 |
| 50681 | exon | 6242 | 6402 | 6242 | ID=MS.gene071315.t1.exon2;Parent=MS.gene071315.t1 |
| 50681 | CDS | 6242 | 6402 | 6242 | ID=cds.MS.gene071315.t1;Parent=MS.gene071315.t1 |
| 50681 | exon | 6646 | 6769 | 6646 | ID=MS.gene071315.t1.exon3;Parent=MS.gene071315.t1 |
| 50681 | CDS | 6646 | 6769 | 6646 | ID=cds.MS.gene071315.t1;Parent=MS.gene071315.t1 |
| 50681 | exon | 6861 | 6964 | 6861 | ID=MS.gene071315.t1.exon4;Parent=MS.gene071315.t1 |
| 50681 | CDS | 6861 | 6964 | 6861 | ID=cds.MS.gene071315.t1;Parent=MS.gene071315.t1 |
| 50681 | exon | 7051 | 7189 | 7051 | ID=MS.gene071315.t1.exon5;Parent=MS.gene071315.t1 |
| 50681 | CDS | 7051 | 7189 | 7051 | ID=cds.MS.gene071315.t1;Parent=MS.gene071315.t1 |
| 50681 | exon | 7272 | 7423 | 7272 | ID=MS.gene071315.t1.exon6;Parent=MS.gene071315.t1 |
| 50681 | CDS | 7272 | 7423 | 7272 | ID=cds.MS.gene071315.t1;Parent=MS.gene071315.t1 |
| 50681 | exon | 7942 | 8051 | 7942 | ID=MS.gene071315.t1.exon7;Parent=MS.gene071315.t1 |
| 50681 | CDS | 7942 | 8051 | 7942 | ID=cds.MS.gene071315.t1;Parent=MS.gene071315.t1 |
| 50681 | exon | 8152 | 8283 | 8152 | ID=MS.gene071315.t1.exon8;Parent=MS.gene071315.t1 |
| 50681 | CDS | 8152 | 8283 | 8152 | ID=cds.MS.gene071315.t1;Parent=MS.gene071315.t1 |
| 50681 | exon | 8494 | 8562 | 8494 | ID=MS.gene071315.t1.exon9;Parent=MS.gene071315.t1 |
| 50681 | CDS | 8494 | 8562 | 8494 | ID=cds.MS.gene071315.t1;Parent=MS.gene071315.t1 |
| 50681 | exon | 8692 | 8878 | 8692 | ID=MS.gene071315.t1.exon10;Parent=MS.gene071315.t1 |
| 50681 | CDS | 8692 | 8878 | 8692 | ID=cds.MS.gene071315.t1;Parent=MS.gene071315.t1 |
| 50681 | exon | 8993 | 9143 | 8993 | ID=MS.gene071315.t1.exon11;Parent=MS.gene071315.t1 |
| 50681 | CDS | 8993 | 9143 | 8993 | ID=cds.MS.gene071315.t1;Parent=MS.gene071315.t1 |
| 50681 | exon | 10224 | 10343 | 10224 | ID=MS.gene071315.t1.exon12;Parent=MS.gene071315.t1 |
| 50681 | CDS | 10224 | 10343 | 10224 | ID=cds.MS.gene071315.t1;Parent=MS.gene071315.t1 |
| 50681 | exon | 10428 | 10546 | 10428 | ID=MS.gene071315.t1.exon13;Parent=MS.gene071315.t1 |
| 50681 | CDS | 10428 | 10546 | 10428 | ID=cds.MS.gene071315.t1;Parent=MS.gene071315.t1 |
| 50681 | exon | 10624 | 10707 | 10624 | ID=MS.gene071315.t1.exon14;Parent=MS.gene071315.t1 |
| 50681 | CDS | 10624 | 10707 | 10624 | ID=cds.MS.gene071315.t1;Parent=MS.gene071315.t1 |
| 50681 | exon | 10904 | 11016 | 10904 | ID=MS.gene071315.t1.exon15;Parent=MS.gene071315.t1 |
| 50681 | CDS | 10904 | 11016 | 10904 | ID=cds.MS.gene071315.t1;Parent=MS.gene071315.t1 |
| 50681 | exon | 11109 | 11338 | 11109 | ID=MS.gene071315.t1.exon16;Parent=MS.gene071315.t1 |
| 50681 | CDS | 11109 | 11338 | 11109 | ID=cds.MS.gene071315.t1;Parent=MS.gene071315.t1 |
| 50681 | exon | 11589 | 12389 | 11589 | ID=MS.gene071315.t1.exon17;Parent=MS.gene071315.t1 |
| 50681 | CDS | 11589 | 12389 | 11589 | ID=cds.MS.gene071315.t1;Parent=MS.gene071315.t1 |
| 50681 | exon | 12479 | 12529 | 12479 | ID=MS.gene071315.t1.exon18;Parent=MS.gene071315.t1 |
| 50681 | CDS | 12479 | 12529 | 12479 | ID=cds.MS.gene071315.t1;Parent=MS.gene071315.t1 |
| 50681 | exon | 12715 | 12900 | 12715 | ID=MS.gene071315.t1.exon19;Parent=MS.gene071315.t1 |
| 50681 | CDS | 12715 | 12900 | 12715 | ID=cds.MS.gene071315.t1;Parent=MS.gene071315.t1 |
| 50681 | exon | 13482 | 13730 | 13482 | ID=MS.gene071315.t1.exon20;Parent=MS.gene071315.t1 |
| 50681 | CDS | 13482 | 13730 | 13482 | ID=cds.MS.gene071315.t1;Parent=MS.gene071315.t1 |
| Gene Sequence |
| Protein sequence |
