Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061225.t1 | XP_013458336.1 | 94.9 | 257 | 9 | 1 | 1 | 257 | 1 | 253 | 4.40E-121 | 444.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061225.t1 | Q75QI0 | 36.7 | 180 | 75 | 6 | 106 | 250 | 115 | 290 | 5.7e-13 | 76.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061225.t1 | B7FJR2 | 94.9 | 257 | 9 | 1 | 1 | 257 | 1 | 253 | 3.1e-121 | 444.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene061225 | MS.gene26811 | 0.867847 | 1.01E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061225.t1 | MTR_4g123060 | 94.942 | 257 | 9 | 1 | 1 | 257 | 1 | 253 | 4.12e-176 | 484 |
| MS.gene061225.t1 | MTR_4g123060 | 94.298 | 228 | 9 | 1 | 30 | 257 | 49 | 272 | 1.11e-152 | 426 |
| MS.gene061225.t1 | MTR_4g123060 | 95.327 | 214 | 6 | 1 | 44 | 257 | 1 | 210 | 1.72e-145 | 405 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061225.t1 | AT5G30490 | 57.269 | 227 | 81 | 4 | 33 | 251 | 16 | 234 | 2.50e-65 | 203 |
| MS.gene061225.t1 | AT5G30490 | 57.269 | 227 | 81 | 4 | 33 | 251 | 16 | 234 | 2.50e-65 | 203 |
| MS.gene061225.t1 | AT5G30490 | 57.269 | 227 | 81 | 4 | 33 | 251 | 16 | 234 | 2.50e-65 | 203 |
Find 55 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAACTGCTAATAACTTTAT+TGG | 0.127150 | 8.3:+5807054 | None:intergenic |
| GTAGAACTGGATGTCTTATT+TGG | 0.132758 | 8.3:-5806880 | MS.gene061225:intron |
| GAAGAGTTCAAACCAGTATT+TGG | 0.182757 | 8.3:-5805813 | MS.gene061225:CDS |
| AAAGGACTGGGGAGAATTTA+AGG | 0.207621 | 8.3:-5805876 | MS.gene061225:CDS |
| TTGCATATCTGGTTGCTTCC+TGG | 0.264763 | 8.3:+5805715 | None:intergenic |
| ACAGCGTCGTCTTGCATATC+TGG | 0.286334 | 8.3:+5805704 | None:intergenic |
| TTTATTCATTTGTTCCCATA+TGG | 0.359963 | 8.3:+5807084 | None:intergenic |
| AGGAAACCTTATCCAAATAC+TGG | 0.366492 | 8.3:+5805801 | None:intergenic |
| ATCTGTCAAAGAACCTGTTC+CGG | 0.370775 | 8.3:-5807242 | MS.gene061225:CDS |
| GTAATCTGTTCGCTGCAAAA+AGG | 0.374277 | 8.3:+5805781 | None:intergenic |
| TAGAACTGGATGTCTTATTT+GGG | 0.385492 | 8.3:-5806879 | MS.gene061225:CDS |
| TCTGTCAAAGAACCTGTTCC+GGG | 0.386970 | 8.3:-5807241 | MS.gene061225:CDS |
| CTTTCGTTTCTGCCTCAAGC+AGG | 0.388900 | 8.3:-5806725 | MS.gene061225:CDS |
| TGTACTTGATAAGACCAAAA+AGG | 0.392164 | 8.3:-5805894 | MS.gene061225:CDS |
| AGCAGAAGGTGCAGGAGCTT+TGG | 0.392692 | 8.3:+5805961 | None:intergenic |
| TTCAAACCAGTATTTGGATA+AGG | 0.393487 | 8.3:-5805807 | MS.gene061225:CDS |
| ACTGAGGTTCGAGACTTTGC+TGG | 0.395239 | 8.3:-5806043 | MS.gene061225:CDS |
| CACGATTGGCATTGCAATCC+AGG | 0.397589 | 8.3:-5805733 | MS.gene061225:CDS |
| AAGCTCAAGTTGATGCCATA+TGG | 0.405389 | 8.3:-5807099 | MS.gene061225:CDS |
| CCCTCTCTCGCTCAAATTCA+CGG | 0.409298 | 8.3:+5805759 | None:intergenic |
| GAACGAAAACAGGATGTTAC+TGG | 0.415009 | 8.3:-5807208 | MS.gene061225:intron |
| GGAAAGCCTGGAACGAAAAC+AGG | 0.417120 | 8.3:-5807218 | MS.gene061225:CDS |
| CTGGATGTCTTATTTGGGAT+TGG | 0.424113 | 8.3:-5806874 | MS.gene061225:CDS |
| ATTGTTTCAGATACAATCAA+TGG | 0.433797 | 8.3:-5807277 | MS.gene061225:intron |
| TGCTGCTGCTGCTCTTGCAG+CGG | 0.435556 | 8.3:-5806760 | MS.gene061225:CDS |
| ATATGGGAACAAATGAATAA+AGG | 0.438066 | 8.3:-5807082 | MS.gene061225:CDS |
| CCGGGAGATTCAGTTGTCTT+CGG | 0.450871 | 8.3:+5806849 | None:intergenic |
| AGCTCAAGTTGATGCCATAT+GGG | 0.464195 | 8.3:-5807098 | MS.gene061225:CDS |
| CGAAGATCTCTTCTTTGTTG+TGG | 0.466300 | 8.3:+5807003 | None:intergenic |
| GAATTTAAGGAAGAAAATAA+AGG | 0.476093 | 8.3:-5805863 | MS.gene061225:CDS |
| GCTTGTGGATTCTGATTCAA+AGG | 0.498471 | 8.3:-5805999 | MS.gene061225:CDS |
| TTCGTTTCTGCCTCAAGCAG+GGG | 0.501811 | 8.3:-5806723 | MS.gene061225:CDS |
| GCATCCACAGCAGAAGGTGC+AGG | 0.508516 | 8.3:+5805953 | None:intergenic |
| TTTCGTTTCTGCCTCAAGCA+GGG | 0.511551 | 8.3:-5806724 | MS.gene061225:CDS |
| GCGAGAGAGGGATGCACGAT+TGG | 0.512295 | 8.3:-5805747 | MS.gene061225:CDS |
| CCGAAGACAACTGAATCTCC+CGG | 0.517646 | 8.3:-5806849 | MS.gene061225:CDS |
| AGCTCCTGCACCTTCTGCTG+TGG | 0.517744 | 8.3:-5805957 | MS.gene061225:CDS |
| TTTCGTTCCAGGCTTTCCCC+CGG | 0.529674 | 8.3:+5807223 | None:intergenic |
| CACAACAAAGAAGAGATCTT+CGG | 0.539075 | 8.3:-5807002 | MS.gene061225:intron |
| TCAAAGTGTACCTTGTGTGC+TGG | 0.541270 | 8.3:-5806814 | MS.gene061225:CDS |
| ACTTTGAGAAGCACACTGCC+CGG | 0.542836 | 8.3:+5806830 | None:intergenic |
| TAAGGAAGAAAATAAAGGAC+TGG | 0.554675 | 8.3:-5805858 | MS.gene061225:CDS |
| ACCGTGAATTTGAGCGAGAG+AGG | 0.565595 | 8.3:-5805760 | MS.gene061225:CDS |
| CCGTGAATTTGAGCGAGAGA+GGG | 0.577774 | 8.3:-5805759 | MS.gene061225:CDS |
| CTTTGAGAAGCACACTGCCC+GGG | 0.578324 | 8.3:+5806831 | None:intergenic |
| CGAAGACAACTGAATCTCCC+GGG | 0.586212 | 8.3:-5806848 | MS.gene061225:CDS |
| TCGTTTCTGCCTCAAGCAGG+GGG | 0.596370 | 8.3:-5806722 | MS.gene061225:CDS |
| AGGACAGCATCCACAGCAGA+AGG | 0.596814 | 8.3:+5805947 | None:intergenic |
| GTACTGCCTTCCAGCACACA+AGG | 0.606346 | 8.3:+5806804 | None:intergenic |
| CTGTCAAAGAACCTGTTCCG+GGG | 0.609983 | 8.3:-5807240 | MS.gene061225:CDS |
| GCGGGAGTGATGAGTTCCGC+CGG | 0.635632 | 8.3:-5807520 | None:intergenic |
| TGTGGATTCTGATTCAAAGG+AGG | 0.652024 | 8.3:-5805996 | MS.gene061225:CDS |
| TGTCAAAGAACCTGTTCCGG+GGG | 0.670943 | 8.3:-5807239 | MS.gene061225:CDS |
| AGTGTACCTTGTGTGCTGGA+AGG | 0.675458 | 8.3:-5806810 | MS.gene061225:CDS |
| GAAGGCAGTACAAGTGACGA+AGG | 0.683883 | 8.3:-5806792 | MS.gene061225:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAAAAAACAAAACAA+CGG | + | chr8.3:5806245-5806264 | None:intergenic | 10.0% |
| !! | AAAACTGCTAATAACTTTAT+TGG | + | chr8.3:5806160-5806179 | None:intergenic | 20.0% |
| !! | AATTGAATATAAAAAGCTTG+TGG | - | chr8.3:5807197-5807216 | MS.gene061225:intron | 20.0% |
| !! | GAATTTAAGGAAGAAAATAA+AGG | - | chr8.3:5807348-5807367 | MS.gene061225:intron | 20.0% |
| !! | GTTCTATGAATAATGAATAA+TGG | + | chr8.3:5807094-5807113 | None:intergenic | 20.0% |
| !! | TAACCGTAAAAATAAAACAT+TGG | - | chr8.3:5806951-5806970 | MS.gene061225:intron | 20.0% |
| !! | TTCCAATATTTGATATAGTA+GGG | - | chr8.3:5806974-5806993 | MS.gene061225:intron | 20.0% |
| !!! | GAACCAATGTTTTATTTTTA+CGG | + | chr8.3:5806957-5806976 | None:intergenic | 20.0% |
| !!! | TGTTTTATTTTTACGGTTAT+TGG | + | chr8.3:5806950-5806969 | None:intergenic | 20.0% |
| ! | AAAAACAAATCTAGATGGAT+CGG | + | chr8.3:5805748-5805767 | None:intergenic | 25.0% |
| ! | AAATTCCACTATGTTATAAC+AGG | + | chr8.3:5806796-5806815 | None:intergenic | 25.0% |
| ! | AATTCCACTATGTTATAACA+GGG | + | chr8.3:5806795-5806814 | None:intergenic | 25.0% |
| ! | ATATGAAAAAGGAGTAAAAG+AGG | + | chr8.3:5805839-5805858 | None:intergenic | 25.0% |
| ! | ATATGGGAACAAATGAATAA+AGG | - | chr8.3:5806129-5806148 | MS.gene061225:intron | 25.0% |
| ! | ATTGTTTCAGATACAATCAA+TGG | - | chr8.3:5805934-5805953 | MS.gene061225:CDS | 25.0% |
| ! | CAATTAGTATTGTCAAATAG+CGG | - | chr8.3:5806760-5806779 | MS.gene061225:CDS | 25.0% |
| ! | CTATGAAAAACAAATCTAGA+TGG | + | chr8.3:5805753-5805772 | None:intergenic | 25.0% |
| ! | GAAACTCAAATGTAATATGT+AGG | + | chr8.3:5807116-5807135 | None:intergenic | 25.0% |
| ! | GTTCCAATATTTGATATAGT+AGG | - | chr8.3:5806973-5806992 | MS.gene061225:intron | 25.0% |
| ! | TGGAAAATTGTAGTGAATTA+GGG | + | chr8.3:5805816-5805835 | None:intergenic | 25.0% |
| ! | TTTATTCATTTGTTCCCATA+TGG | + | chr8.3:5806130-5806149 | None:intergenic | 25.0% |
| !! | TTTTCATTATCAGATTACTG+AGG | - | chr8.3:5807152-5807171 | MS.gene061225:intron | 25.0% |
| !!! | GATTTGTTTTTCATAGTGAT+TGG | - | chr8.3:5805757-5805776 | MS.gene061225:CDS | 25.0% |
| !!! | TTTTCTTCTTGATTTGTTCA+AGG | + | chr8.3:5807287-5807306 | None:intergenic | 25.0% |
| AAGTGGTTTGAATTCATGTT+TGG | - | chr8.3:5807057-5807076 | MS.gene061225:CDS | 30.0% | |
| AATTTGAGCATACCATACAA+TGG | - | chr8.3:5807019-5807038 | MS.gene061225:CDS | 30.0% | |
| ACATTCACAATTTGAGTAGA+AGG | + | chr8.3:5806313-5806332 | None:intergenic | 30.0% | |
| AGCCCTACTATATCAAATAT+TGG | + | chr8.3:5806979-5806998 | None:intergenic | 30.0% | |
| ATCCAAGAAAATTGTGACAT+AGG | - | chr8.3:5806703-5806722 | MS.gene061225:intron | 30.0% | |
| ATGGAAAATTGTCCATTGTA+TGG | + | chr8.3:5807034-5807053 | None:intergenic | 30.0% | |
| ATTAGCACCTGACTAAAAAT+AGG | + | chr8.3:5806552-5806571 | None:intergenic | 30.0% | |
| ATTGTATGGTATGCTCAAAT+TGG | + | chr8.3:5807020-5807039 | None:intergenic | 30.0% | |
| CGCTATTTGACAATACTAAT+TGG | + | chr8.3:5806762-5806781 | None:intergenic | 30.0% | |
| GTGGAAAATTGTAGTGAATT+AGG | + | chr8.3:5805817-5805836 | None:intergenic | 30.0% | |
| TAAGGAAGAAAATAAAGGAC+TGG | - | chr8.3:5807353-5807372 | MS.gene061225:intron | 30.0% | |
| TCAAATTGTGAATGTAGAAC+TGG | - | chr8.3:5806318-5806337 | MS.gene061225:intron | 30.0% | |
| TGAATTCAAACCACTTCAAA+TGG | + | chr8.3:5807053-5807072 | None:intergenic | 30.0% | |
| TGTACTTGATAAGACCAAAA+AGG | - | chr8.3:5807317-5807336 | MS.gene061225:intron | 30.0% | |
| TTCAAACCAGTATTTGGATA+AGG | - | chr8.3:5807404-5807423 | MS.gene061225:intron | 30.0% | |
| ! | TGACAATACTAATTGGTGAT+TGG | + | chr8.3:5806755-5806774 | None:intergenic | 30.0% |
| !! | GTTGCTTTGGATTACAATTT+TGG | - | chr8.3:5805908-5805927 | MS.gene061225:CDS | 30.0% |
| !! | TACAAAGTGTTGTCAAATAG+CGG | - | chr8.3:5806852-5806871 | MS.gene061225:CDS | 30.0% |
| !! | TAGAACTGGATGTCTTATTT+GGG | - | chr8.3:5806332-5806351 | MS.gene061225:intron | 30.0% |
| AAATAGCGGTTATAGCATTG+CGG | - | chr8.3:5806866-5806885 | MS.gene061225:CDS | 35.0% | |
| AACAAATCGTCATTGTTCTG+CGG | - | chr8.3:5806817-5806836 | MS.gene061225:CDS | 35.0% | |
| AGAAAATTGTGACATAGGAC+TGG | - | chr8.3:5806708-5806727 | MS.gene061225:intron | 35.0% | |
| AGGAAACCTTATCCAAATAC+TGG | + | chr8.3:5807413-5807432 | None:intergenic | 35.0% | |
| CACAACAAAGAAGAGATCTT+CGG | - | chr8.3:5806209-5806228 | MS.gene061225:intron | 35.0% | |
| GAAGAGTTCAAACCAGTATT+TGG | - | chr8.3:5807398-5807417 | MS.gene061225:intron | 35.0% | |
| TATGGTATGCTCAAATTGGT+TGG | + | chr8.3:5807016-5807035 | None:intergenic | 35.0% | |
| TGAAAAAGGAGTAAAAGAGG+TGG | + | chr8.3:5805836-5805855 | None:intergenic | 35.0% | |
| TGATAAGACCAAAAAGGACT+GGG | - | chr8.3:5807323-5807342 | MS.gene061225:intron | 35.0% | |
| TTGATAAGACCAAAAAGGAC+TGG | - | chr8.3:5807322-5807341 | MS.gene061225:intron | 35.0% | |
| ! | GGACAATTTTCCATTTGAAG+TGG | - | chr8.3:5807040-5807059 | MS.gene061225:CDS | 35.0% |
| ! | GTAGAACTGGATGTCTTATT+TGG | - | chr8.3:5806331-5806350 | MS.gene061225:intron | 35.0% |
| ! | GTCCTATGTCACAATTTTCT+TGG | + | chr8.3:5806708-5806727 | None:intergenic | 35.0% |
| ! | GTGGTTTTTGCAGTAGAATT+AGG | + | chr8.3:5806192-5806211 | None:intergenic | 35.0% |
| ! | TTTCATGCTAGTTGTTGCTT+TGG | - | chr8.3:5805895-5805914 | MS.gene061225:CDS | 35.0% |
| AAAACAGGATGTTACTGGTG+AGG | - | chr8.3:5806008-5806027 | MS.gene061225:CDS | 40.0% | |
| AAACAGGATGTTACTGGTGA+GGG | - | chr8.3:5806009-5806028 | MS.gene061225:CDS | 40.0% | |
| AAAGGACTGGGGAGAATTTA+AGG | - | chr8.3:5807335-5807354 | MS.gene061225:intron | 40.0% | |
| ACCTTGTGCATTTAGGCAAT+AGG | - | chr8.3:5806590-5806609 | MS.gene061225:intron | 40.0% | |
| ATCTGTCAAAGAACCTGTTC+CGG | - | chr8.3:5805969-5805988 | MS.gene061225:CDS | 40.0% | |
| ATGTTGTCAATTGCGGATCA+CGG | + | chr8.3:5806922-5806941 | None:intergenic | 40.0% | |
| CCTTGTGCATTTAGGCAATA+GGG | - | chr8.3:5806591-5806610 | MS.gene061225:intron | 40.0% | |
| CGAAGATCTCTTCTTTGTTG+TGG | + | chr8.3:5806211-5806230 | None:intergenic | 40.0% | |
| GAACGAAAACAGGATGTTAC+TGG | - | chr8.3:5806003-5806022 | MS.gene061225:CDS | 40.0% | |
| GATAAGACCAAAAAGGACTG+GGG | - | chr8.3:5807324-5807343 | MS.gene061225:intron | 40.0% | |
| GCAACCCTGTTATAACATAG+TGG | - | chr8.3:5806788-5806807 | MS.gene061225:CDS | 40.0% | |
| GCTTGTGGATTCTGATTCAA+AGG | - | chr8.3:5807212-5807231 | MS.gene061225:CDS | 40.0% | |
| GGAACCAATGTTGTCAATTG+CGG | + | chr8.3:5806929-5806948 | None:intergenic | 40.0% | |
| GGGAAAAACCTTGTGCATTT+AGG | - | chr8.3:5806583-5806602 | MS.gene061225:intron | 40.0% | |
| GTAATCTGTTCGCTGCAAAA+AGG | + | chr8.3:5807433-5807452 | None:intergenic | 40.0% | |
| TGATCCGCAATTGACAACAT+TGG | - | chr8.3:5806922-5806941 | MS.gene061225:intron | 40.0% | |
| TGTGGATTCTGATTCAAAGG+AGG | - | chr8.3:5807215-5807234 | MS.gene061225:CDS | 40.0% | |
| ! | AAATTCTCCCCAGTCCTTTT+TGG | + | chr8.3:5807334-5807353 | None:intergenic | 40.0% |
| ! | TAACATCCTGTTTTCGTTCC+AGG | + | chr8.3:5806002-5806021 | None:intergenic | 40.0% |
| !! | AAGCTCAAGTTGATGCCATA+TGG | - | chr8.3:5806112-5806131 | MS.gene061225:intron | 40.0% |
| !! | AGCTCAAGTTGATGCCATAT+GGG | - | chr8.3:5806113-5806132 | MS.gene061225:intron | 40.0% |
| !! | CTGGATGTCTTATTTGGGAT+TGG | - | chr8.3:5806337-5806356 | MS.gene061225:intron | 40.0% |
| !!! | CAGTGCTCCTATTTTTAGTC+AGG | - | chr8.3:5806542-5806561 | MS.gene061225:intron | 40.0% |
| CAATTGCGGATCACGGAAAA+TGG | + | chr8.3:5806915-5806934 | None:intergenic | 45.0% | |
| CCCTATTGCCTAAATGCACA+AGG | + | chr8.3:5806594-5806613 | None:intergenic | 45.0% | |
| TCAAAGTGTACCTTGTGTGC+TGG | - | chr8.3:5806397-5806416 | MS.gene061225:intron | 45.0% | |
| TCTGTCAAAGAACCTGTTCC+GGG | - | chr8.3:5805970-5805989 | MS.gene061225:CDS | 45.0% | |
| TGCATTTAGGCAATAGGGAG+AGG | - | chr8.3:5806596-5806615 | MS.gene061225:intron | 45.0% | |
| TTGCATATCTGGTTGCTTCC+TGG | + | chr8.3:5807499-5807518 | None:intergenic | 45.0% | |
| TTTCGTTTCTGCCTCAAGCA+GGG | - | chr8.3:5806487-5806506 | MS.gene061225:intron | 45.0% | |
| ! | AAGGTTTTTCCCACTTCAGC+TGG | + | chr8.3:5806575-5806594 | None:intergenic | 45.0% |
| !! | TATATATATAAATATGAAAA+AGG | + | chr8.3:5805850-5805869 | None:intergenic | 5.0% |
| ACAGCGTCGTCTTGCATATC+TGG | + | chr8.3:5807510-5807529 | None:intergenic | 50.0% | |
| ACCGTGAATTTGAGCGAGAG+AGG | - | chr8.3:5807451-5807470 | MS.gene061225:intron | 50.0% | |
| ACTGAGGTTCGAGACTTTGC+TGG | - | chr8.3:5807168-5807187 | MS.gene061225:intron | 50.0% | |
| AGGTGCTAATCCAGCTGAAG+TGG | - | chr8.3:5806562-5806581 | MS.gene061225:intron | 50.0% | |
| AGTGTACCTTGTGTGCTGGA+AGG | - | chr8.3:5806401-5806420 | MS.gene061225:intron | 50.0% | |
| CACGATTGGCATTGCAATCC+AGG | - | chr8.3:5807478-5807497 | MS.gene061225:intron | 50.0% | |
| CCCTCTCTCGCTCAAATTCA+CGG | + | chr8.3:5807455-5807474 | None:intergenic | 50.0% | |
| CCGAAGACAACTGAATCTCC+CGG | - | chr8.3:5806362-5806381 | MS.gene061225:intron | 50.0% | |
| CCGGGAGATTCAGTTGTCTT+CGG | + | chr8.3:5806365-5806384 | None:intergenic | 50.0% | |
| CCGTGAATTTGAGCGAGAGA+GGG | - | chr8.3:5807452-5807471 | MS.gene061225:intron | 50.0% | |
| CGAAGACAACTGAATCTCCC+GGG | - | chr8.3:5806363-5806382 | MS.gene061225:intron | 50.0% | |
| CTGTCAAAGAACCTGTTCCG+GGG | - | chr8.3:5805971-5805990 | MS.gene061225:CDS | 50.0% | |
| CTTTCGTTTCTGCCTCAAGC+AGG | - | chr8.3:5806486-5806505 | MS.gene061225:intron | 50.0% | |
| GAAGGCAGTACAAGTGACGA+AGG | - | chr8.3:5806419-5806438 | MS.gene061225:intron | 50.0% | |
| GGAAAGCCTGGAACGAAAAC+AGG | - | chr8.3:5805993-5806012 | MS.gene061225:CDS | 50.0% | |
| GGATCACGGAAAATGGCAGT+TGG | + | chr8.3:5806908-5806927 | None:intergenic | 50.0% | |
| GGTGCTAATCCAGCTGAAGT+GGG | - | chr8.3:5806563-5806582 | MS.gene061225:intron | 50.0% | |
| TGTCAAAGAACCTGTTCCGG+GGG | - | chr8.3:5805972-5805991 | MS.gene061225:CDS | 50.0% | |
| TTCGTTTCTGCCTCAAGCAG+GGG | - | chr8.3:5806488-5806507 | MS.gene061225:intron | 50.0% | |
| ! | ACTTTGAGAAGCACACTGCC+CGG | + | chr8.3:5806384-5806403 | None:intergenic | 50.0% |
| ! | GAGAGAAAAAAGAGCGCGCA+AGG | + | chr8.3:5805722-5805741 | None:intergenic | 50.0% |
| !! | AAGAGCGCGCAAGGTTTTAC+CGG | + | chr8.3:5805713-5805732 | None:intergenic | 50.0% |
| AGGACAGCATCCACAGCAGA+AGG | + | chr8.3:5807267-5807286 | None:intergenic | 55.0% | |
| CACAACTTTCCCCCTGCTTG+AGG | + | chr8.3:5806501-5806520 | None:intergenic | 55.0% | |
| CTCAAGCAGGGGGAAAGTTG+TGG | - | chr8.3:5806499-5806518 | MS.gene061225:intron | 55.0% | |
| GTACTGCCTTCCAGCACACA+AGG | + | chr8.3:5806410-5806429 | None:intergenic | 55.0% | |
| TCGTTTCTGCCTCAAGCAGG+GGG | - | chr8.3:5806489-5806508 | MS.gene061225:intron | 55.0% | |
| TTTCGTTCCAGGCTTTCCCC+CGG | + | chr8.3:5805991-5806010 | None:intergenic | 55.0% | |
| ! | AGCAGAAGGTGCAGGAGCTT+TGG | + | chr8.3:5807253-5807272 | None:intergenic | 55.0% |
| ! | CTTTGAGAAGCACACTGCCC+GGG | + | chr8.3:5806383-5806402 | None:intergenic | 55.0% |
| AGCTCCTGCACCTTCTGCTG+TGG | - | chr8.3:5807254-5807273 | MS.gene061225:CDS | 60.0% | |
| GCGAGAGAGGGATGCACGAT+TGG | - | chr8.3:5807464-5807483 | MS.gene061225:intron | 60.0% | |
| TGCTGCTGCTGCTCTTGCAG+CGG | - | chr8.3:5806451-5806470 | MS.gene061225:intron | 60.0% | |
| ! | AGCGCGCAAGGTTTTACCGG+CGG | + | chr8.3:5805710-5805729 | None:intergenic | 60.0% |
| ! | GCATCCACAGCAGAAGGTGC+AGG | + | chr8.3:5807261-5807280 | None:intergenic | 60.0% |
| ACCTGTTCCGGGGGAAAGCC+TGG | - | chr8.3:5805981-5806000 | MS.gene061225:CDS | 65.0% | |
| TCCAGGCTTTCCCCCGGAAC+AGG | + | chr8.3:5805985-5806004 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 5805700 | 5807533 | 5805700 | ID=MS.gene061225 |
| chr8.3 | mRNA | 5805700 | 5807533 | 5805700 | ID=MS.gene061225.t1;Parent=MS.gene061225 |
| chr8.3 | exon | 5807521 | 5807533 | 5807521 | ID=MS.gene061225.t1.exon1;Parent=MS.gene061225.t1 |
| chr8.3 | CDS | 5807521 | 5807533 | 5807521 | ID=cds.MS.gene061225.t1;Parent=MS.gene061225.t1 |
| chr8.3 | exon | 5807209 | 5807289 | 5807209 | ID=MS.gene061225.t1.exon2;Parent=MS.gene061225.t1 |
| chr8.3 | CDS | 5807209 | 5807289 | 5807209 | ID=cds.MS.gene061225.t1;Parent=MS.gene061225.t1 |
| chr8.3 | exon | 5807003 | 5807127 | 5807003 | ID=MS.gene061225.t1.exon3;Parent=MS.gene061225.t1 |
| chr8.3 | CDS | 5807003 | 5807127 | 5807003 | ID=cds.MS.gene061225.t1;Parent=MS.gene061225.t1 |
| chr8.3 | exon | 5806713 | 5806898 | 5806713 | ID=MS.gene061225.t1.exon4;Parent=MS.gene061225.t1 |
| chr8.3 | CDS | 5806713 | 5806898 | 5806713 | ID=cds.MS.gene061225.t1;Parent=MS.gene061225.t1 |
| chr8.3 | exon | 5805700 | 5806068 | 5805700 | ID=MS.gene061225.t1.exon5;Parent=MS.gene061225.t1 |
| chr8.3 | CDS | 5805700 | 5806068 | 5805700 | ID=cds.MS.gene061225.t1;Parent=MS.gene061225.t1 |
| Gene Sequence |
| Protein sequence |
