Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26811.t1 | XP_013458336.1 | 95.7 | 253 | 7 | 1 | 6 | 258 | 5 | 253 | 2.20E-120 | 441.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26811.t1 | Q75QI0 | 36.7 | 180 | 75 | 6 | 107 | 251 | 115 | 290 | 5.8e-13 | 76.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26811.t1 | B7FJR2 | 95.7 | 253 | 7 | 1 | 6 | 258 | 5 | 253 | 1.6e-120 | 441.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049756 | MS.gene26811 | 0.80484 | 1.78E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene26811 | 0.822663 | 2.10E-53 | -1.69E-46 |
| MS.gene050317 | MS.gene26811 | 0.812595 | 3.92E-51 | -1.69E-46 |
| MS.gene050992 | MS.gene26811 | 0.826565 | 2.53E-54 | -1.69E-46 |
| MS.gene051245 | MS.gene26811 | 0.817921 | 2.57E-52 | -1.69E-46 |
| MS.gene051451 | MS.gene26811 | 0.80263 | 5.12E-49 | -1.69E-46 |
| MS.gene052286 | MS.gene26811 | 0.806366 | 8.52E-50 | -1.69E-46 |
| MS.gene053109 | MS.gene26811 | 0.819945 | 8.90E-53 | -1.69E-46 |
| MS.gene055424 | MS.gene26811 | 0.822384 | 2.44E-53 | -1.69E-46 |
| MS.gene056580 | MS.gene26811 | 0.80971 | 1.65E-50 | -1.69E-46 |
| MS.gene057094 | MS.gene26811 | 0.80315 | 4.00E-49 | -1.69E-46 |
| MS.gene057234 | MS.gene26811 | 0.849484 | 3.14E-60 | -1.69E-46 |
| MS.gene058055 | MS.gene26811 | 0.821141 | 4.73E-53 | -1.69E-46 |
| MS.gene058182 | MS.gene26811 | 0.809847 | 1.55E-50 | -1.69E-46 |
| MS.gene058238 | MS.gene26811 | 0.804889 | 1.74E-49 | -1.69E-46 |
| MS.gene058906 | MS.gene26811 | 0.805561 | 1.26E-49 | -1.69E-46 |
| MS.gene06001 | MS.gene26811 | 0.802954 | 4.39E-49 | -1.69E-46 |
| MS.gene061225 | MS.gene26811 | 0.867847 | 1.01E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26811.t1 | MTR_4g123060 | 95.652 | 253 | 7 | 1 | 6 | 258 | 5 | 253 | 1.69e-174 | 481 |
| MS.gene26811.t1 | MTR_4g123060 | 95.175 | 228 | 7 | 1 | 31 | 258 | 49 | 272 | 2.50e-154 | 430 |
| MS.gene26811.t1 | MTR_4g123060 | 96.262 | 214 | 4 | 1 | 45 | 258 | 1 | 210 | 1.08e-146 | 409 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26811.t1 | AT5G30490 | 57.709 | 227 | 80 | 4 | 34 | 252 | 16 | 234 | 4.17e-66 | 205 |
| MS.gene26811.t1 | AT5G30490 | 57.709 | 227 | 80 | 4 | 34 | 252 | 16 | 234 | 4.17e-66 | 205 |
| MS.gene26811.t1 | AT5G30490 | 57.709 | 227 | 80 | 4 | 34 | 252 | 16 | 234 | 4.17e-66 | 205 |
Find 55 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAACTGCTAATAACTTTAT+TGG | 0.127150 | 8.2:+10649052 | None:intergenic |
| GTAGAACTGGATGTCTTATT+TGG | 0.132758 | 8.2:-10648878 | MS.gene26811:intron |
| GAAGAGTTCAAACCAGTATT+TGG | 0.182757 | 8.2:-10647811 | MS.gene26811:CDS |
| AAAGGACTGGGGAGAATTTA+AGG | 0.207621 | 8.2:-10647874 | MS.gene26811:CDS |
| TTGCATATCTGGTCGCTTCC+TGG | 0.258995 | 8.2:+10647713 | None:intergenic |
| TAATTCTATACCTTTGGTTT+TGG | 0.279568 | 8.2:+10650538 | None:intergenic |
| ACAGCGTCGTCTTGCATATC+TGG | 0.348328 | 8.2:+10647702 | None:intergenic |
| TTTATTCATTTGTTCCCATA+TGG | 0.359963 | 8.2:+10649082 | None:intergenic |
| AGGAAACCTTATCCAAATAC+TGG | 0.366492 | 8.2:+10647799 | None:intergenic |
| ATCTGTCAAAGAACCTGTTC+CGG | 0.370775 | 8.2:-10649242 | MS.gene26811:CDS |
| GTAATCTGTTCGCTGCAAAA+AGG | 0.374277 | 8.2:+10647779 | None:intergenic |
| TAGAACTGGATGTCTTATTT+GGG | 0.385492 | 8.2:-10648877 | MS.gene26811:CDS |
| TCTGTCAAAGAACCTGTTCC+GGG | 0.386970 | 8.2:-10649241 | MS.gene26811:CDS |
| CTTTCGTTTCTGCCTCAAGC+AGG | 0.388900 | 8.2:-10648723 | MS.gene26811:CDS |
| TGTACTTGATAAGACCAAAA+AGG | 0.392164 | 8.2:-10647892 | MS.gene26811:CDS |
| AGCAGAAGGTGCAGGAGCTT+TGG | 0.392692 | 8.2:+10647959 | None:intergenic |
| TTCAAACCAGTATTTGGATA+AGG | 0.393487 | 8.2:-10647805 | MS.gene26811:CDS |
| ACTGAGGTTCGAGACTTTGC+TGG | 0.395239 | 8.2:-10648041 | MS.gene26811:CDS |
| CACGATTGGCATTGCAATCC+AGG | 0.397589 | 8.2:-10647731 | MS.gene26811:CDS |
| AAGCTCAAGTTGATGCCATA+TGG | 0.405389 | 8.2:-10649097 | MS.gene26811:CDS |
| CCCTCTCTCGCTCAAATTCA+CGG | 0.409298 | 8.2:+10647757 | None:intergenic |
| GAACGAAAACAGGATGTTAC+TGG | 0.415009 | 8.2:-10649208 | MS.gene26811:intron |
| GGAAAGCCTGGAACGAAAAC+AGG | 0.417120 | 8.2:-10649218 | MS.gene26811:CDS |
| CTGGATGTCTTATTTGGGAT+TGG | 0.424113 | 8.2:-10648872 | MS.gene26811:CDS |
| ATTGTTTCAGATACAATCAA+TGG | 0.433797 | 8.2:-10649277 | MS.gene26811:intron |
| TGCTGCTGCTGCTCTTGCAG+CGG | 0.435556 | 8.2:-10648758 | MS.gene26811:CDS |
| ATATGGGAACAAATGAATAA+AGG | 0.438066 | 8.2:-10649080 | MS.gene26811:CDS |
| CCGGGAGATTCAGTTGTCTT+CGG | 0.450871 | 8.2:+10648847 | None:intergenic |
| AGCTCAAGTTGATGCCATAT+GGG | 0.464195 | 8.2:-10649096 | MS.gene26811:CDS |
| CGAAGATCTCTTCTTTGTTG+TGG | 0.466300 | 8.2:+10649001 | None:intergenic |
| GAATTTAAGGAAGAAAATAA+AGG | 0.476093 | 8.2:-10647861 | MS.gene26811:CDS |
| GCTTGTGGATTCTGATTCAA+AGG | 0.498471 | 8.2:-10647997 | MS.gene26811:CDS |
| TTCGTTTCTGCCTCAAGCAG+GGG | 0.501811 | 8.2:-10648721 | MS.gene26811:CDS |
| GCATCCACAGCAGAAGGTGC+AGG | 0.508516 | 8.2:+10647951 | None:intergenic |
| TTTCGTTTCTGCCTCAAGCA+GGG | 0.511551 | 8.2:-10648722 | MS.gene26811:CDS |
| GCGAGAGAGGGATGCACGAT+TGG | 0.512295 | 8.2:-10647745 | MS.gene26811:CDS |
| CCGAAGACAACTGAATCTCC+CGG | 0.517646 | 8.2:-10648847 | MS.gene26811:CDS |
| AGCTCCTGCACCTTCTGCTG+TGG | 0.517744 | 8.2:-10647955 | MS.gene26811:CDS |
| TTTCGTTCCAGGCTTTCCCC+CGG | 0.529674 | 8.2:+10649223 | None:intergenic |
| CACAACAAAGAAGAGATCTT+CGG | 0.539075 | 8.2:-10649000 | MS.gene26811:intron |
| TCAAAGTGTACCTTGTGTGC+TGG | 0.541270 | 8.2:-10648812 | MS.gene26811:CDS |
| ACTTTGAGAAGCACACTGCC+CGG | 0.542836 | 8.2:+10648828 | None:intergenic |
| TAAGGAAGAAAATAAAGGAC+TGG | 0.554675 | 8.2:-10647856 | MS.gene26811:CDS |
| ACCGTGAATTTGAGCGAGAG+AGG | 0.565595 | 8.2:-10647758 | MS.gene26811:CDS |
| CCGTGAATTTGAGCGAGAGA+GGG | 0.577774 | 8.2:-10647757 | MS.gene26811:CDS |
| CTTTGAGAAGCACACTGCCC+GGG | 0.578324 | 8.2:+10648829 | None:intergenic |
| CGAAGACAACTGAATCTCCC+GGG | 0.586212 | 8.2:-10648846 | MS.gene26811:CDS |
| TCGTTTCTGCCTCAAGCAGG+GGG | 0.596370 | 8.2:-10648720 | MS.gene26811:CDS |
| AGGACAGCATCCACAGCAGA+AGG | 0.596814 | 8.2:+10647945 | None:intergenic |
| GTACTGCCTTCCAGCACACA+AGG | 0.606346 | 8.2:+10648802 | None:intergenic |
| CTGTCAAAGAACCTGTTCCG+GGG | 0.609983 | 8.2:-10649240 | MS.gene26811:CDS |
| TGTGGATTCTGATTCAAAGG+AGG | 0.652024 | 8.2:-10647994 | MS.gene26811:CDS |
| TGTCAAAGAACCTGTTCCGG+GGG | 0.670943 | 8.2:-10649239 | MS.gene26811:CDS |
| AGTGTACCTTGTGTGCTGGA+AGG | 0.675458 | 8.2:-10648808 | MS.gene26811:CDS |
| GAAGGCAGTACAAGTGACGA+AGG | 0.683883 | 8.2:-10648790 | MS.gene26811:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTATTTTATTTTTTTAA+AGG | + | chr8.2:10648103-10648122 | None:intergenic | 0.0% |
| !! | AAAAATAAAAAACAAAACAA+CGG | + | chr8.2:10649276-10649295 | None:intergenic | 10.0% |
| !! | AAACTTGATTAATTAAATAT+AGG | - | chr8.2:10648400-10648419 | MS.gene26811:intron | 10.0% |
| !! | AACTTGATTAATTAAATATA+GGG | - | chr8.2:10648401-10648420 | MS.gene26811:intron | 10.0% |
| !! | ATATATACCTAAAATAATTT+AGG | - | chr8.2:10648579-10648598 | MS.gene26811:intron | 10.0% |
| !! | TATATTTAATTAATCAAGTT+TGG | + | chr8.2:10648401-10648420 | None:intergenic | 10.0% |
| !!! | TTATTTTAGGTATATATTTA+AGG | + | chr8.2:10648576-10648595 | None:intergenic | 10.0% |
| !!! | TTTATTTTTTTAAAGGAAAA+GGG | + | chr8.2:10648096-10648115 | None:intergenic | 10.0% |
| !!! | TTTTATTTTTTTAAAGGAAA+AGG | + | chr8.2:10648097-10648116 | None:intergenic | 10.0% |
| !!! | TTTTTATTTTTTTTGAAAAG+GGG | + | chr8.2:10648127-10648146 | None:intergenic | 10.0% |
| !!! | TTATTTTTTTAAAGGAAAAG+GGG | + | chr8.2:10648095-10648114 | None:intergenic | 15.0% |
| !! | AAAACTGCTAATAACTTTAT+TGG | + | chr8.2:10649191-10649210 | None:intergenic | 20.0% |
| !! | AATTGAATATAAAAAGCTTG+TGG | - | chr8.2:10650228-10650247 | MS.gene26811:intron | 20.0% |
| !! | GAATTTAAGGAAGAAAATAA+AGG | - | chr8.2:10650379-10650398 | MS.gene26811:intron | 20.0% |
| !! | GTTCTATGAATAATGAATAA+TGG | + | chr8.2:10650125-10650144 | None:intergenic | 20.0% |
| !! | TAAATATATGAGGTTAAGTT+CGG | + | chr8.2:10648008-10648027 | None:intergenic | 20.0% |
| !! | TAACCGTAAAAATAAAACAT+TGG | - | chr8.2:10649982-10650001 | MS.gene26811:intron | 20.0% |
| !! | TTCCAATATTTGATATAGTA+GGG | - | chr8.2:10650005-10650024 | MS.gene26811:intron | 20.0% |
| !!! | ATTATAGCTCAAAATGATTT+TGG | + | chr8.2:10647750-10647769 | None:intergenic | 20.0% |
| !!! | GAACCAATGTTTTATTTTTA+CGG | + | chr8.2:10649988-10650007 | None:intergenic | 20.0% |
| !!! | GCAAGTTTAAAATTAAACTT+CGG | + | chr8.2:10648258-10648277 | None:intergenic | 20.0% |
| !!! | TGTTTTATTTTTACGGTTAT+TGG | + | chr8.2:10649981-10650000 | None:intergenic | 20.0% |
| !!! | TTATAGCTCAAAATGATTTT+GGG | + | chr8.2:10647749-10647768 | None:intergenic | 20.0% |
| ! | AAAAACAAATCTAGATGGAT+CGG | + | chr8.2:10648781-10648800 | None:intergenic | 25.0% |
| ! | AAATTCCACTATGTTATAAC+AGG | + | chr8.2:10649827-10649846 | None:intergenic | 25.0% |
| ! | AAGGAAAATGTTAACGATTA+AGG | + | chr8.2:10648557-10648576 | None:intergenic | 25.0% |
| ! | AATTCCACTATGTTATAACA+GGG | + | chr8.2:10649826-10649845 | None:intergenic | 25.0% |
| ! | ATATGAAAAAGGAGTAAAAG+AGG | + | chr8.2:10648872-10648891 | None:intergenic | 25.0% |
| ! | ATATGGGAACAAATGAATAA+AGG | - | chr8.2:10649160-10649179 | MS.gene26811:intron | 25.0% |
| ! | ATTGTTTCAGATACAATCAA+TGG | - | chr8.2:10648963-10648982 | MS.gene26811:intron | 25.0% |
| ! | CAATATCCATGGTTAAAAAA+GGG | - | chr8.2:10648638-10648657 | MS.gene26811:intron | 25.0% |
| ! | CAATTAGTATTGTCAAATAG+CGG | - | chr8.2:10649791-10649810 | MS.gene26811:intron | 25.0% |
| ! | CTATGAAAAACAAATCTAGA+TGG | + | chr8.2:10648786-10648805 | None:intergenic | 25.0% |
| ! | GAAACTCAAATGTAATATGT+AGG | + | chr8.2:10650147-10650166 | None:intergenic | 25.0% |
| ! | GTTCCAATATTTGATATAGT+AGG | - | chr8.2:10650004-10650023 | MS.gene26811:intron | 25.0% |
| ! | TGGAAAATTGTAGTGAATTA+GGG | + | chr8.2:10648849-10648868 | None:intergenic | 25.0% |
| ! | TTTATTCATTTGTTCCCATA+TGG | + | chr8.2:10649161-10649180 | None:intergenic | 25.0% |
| !! | AAGGGATGATTAAATTTTGA+TGG | + | chr8.2:10647958-10647977 | None:intergenic | 25.0% |
| !! | ATTCAACTTGGTCTAAAATA+AGG | + | chr8.2:10647801-10647820 | None:intergenic | 25.0% |
| !! | TTTTCATTATCAGATTACTG+AGG | - | chr8.2:10650183-10650202 | MS.gene26811:intron | 25.0% |
| !!! | AAATGATTTTGGGATTTTAG+TGG | + | chr8.2:10647739-10647758 | None:intergenic | 25.0% |
| !!! | GATTTGTTTTTCATAGTGAT+TGG | - | chr8.2:10648790-10648809 | MS.gene26811:CDS | 25.0% |
| !!! | TAATTCTATACCTTTGGTTT+TGG | + | chr8.2:10647705-10647724 | None:intergenic | 25.0% |
| !!! | TTTTCTTCTTGATTTGTTCA+AGG | + | chr8.2:10650318-10650337 | None:intergenic | 25.0% |
| AAAATAAGAAGGAAGGTTTC+TGG | - | chr8.2:10648666-10648685 | MS.gene26811:intron | 30.0% | |
| AAAGGGATACGAAAATAAGA+AGG | - | chr8.2:10648655-10648674 | MS.gene26811:intron | 30.0% | |
| AAGTGGTTTGAATTCATGTT+TGG | - | chr8.2:10650088-10650107 | MS.gene26811:intron | 30.0% | |
| AATTTGAGCATACCATACAA+TGG | - | chr8.2:10650050-10650069 | MS.gene26811:intron | 30.0% | |
| ACATTCACAATTTGAGTAGA+AGG | + | chr8.2:10649344-10649363 | None:intergenic | 30.0% | |
| ACCTAAAATAATTTAGGTCG+TGG | - | chr8.2:10648585-10648604 | MS.gene26811:intron | 30.0% | |
| AGCCCTACTATATCAAATAT+TGG | + | chr8.2:10650010-10650029 | None:intergenic | 30.0% | |
| ATCAAAATGCATCTATGAAG+AGG | + | chr8.2:10647844-10647863 | None:intergenic | 30.0% | |
| ATCCAAGAAAATTGTGACAT+AGG | - | chr8.2:10649734-10649753 | MS.gene26811:intron | 30.0% | |
| ATGGAAAATTGTCCATTGTA+TGG | + | chr8.2:10650065-10650084 | None:intergenic | 30.0% | |
| ATTAGCACCTGACTAAAAAT+AGG | + | chr8.2:10649583-10649602 | None:intergenic | 30.0% | |
| ATTGTATGGTATGCTCAAAT+TGG | + | chr8.2:10650051-10650070 | None:intergenic | 30.0% | |
| CGCTATTTGACAATACTAAT+TGG | + | chr8.2:10649793-10649812 | None:intergenic | 30.0% | |
| GCAATATCCATGGTTAAAAA+AGG | - | chr8.2:10648637-10648656 | MS.gene26811:intron | 30.0% | |
| GTGGAAAATTGTAGTGAATT+AGG | + | chr8.2:10648850-10648869 | None:intergenic | 30.0% | |
| TAAGGAAGAAAATAAAGGAC+TGG | - | chr8.2:10650384-10650403 | MS.gene26811:intron | 30.0% | |
| TCAAATTGTGAATGTAGAAC+TGG | - | chr8.2:10649349-10649368 | MS.gene26811:intron | 30.0% | |
| TGAATTCAAACCACTTCAAA+TGG | + | chr8.2:10650084-10650103 | None:intergenic | 30.0% | |
| TGAGGATAATTCTATACCTT+TGG | + | chr8.2:10647711-10647730 | None:intergenic | 30.0% | |
| TGTACTTGATAAGACCAAAA+AGG | - | chr8.2:10650348-10650367 | MS.gene26811:intron | 30.0% | |
| TGTAGTTTAGCGATAATGTA+GGG | + | chr8.2:10648164-10648183 | None:intergenic | 30.0% | |
| TTCAAACCAGTATTTGGATA+AGG | - | chr8.2:10650435-10650454 | MS.gene26811:intron | 30.0% | |
| TTGTAGTTTAGCGATAATGT+AGG | + | chr8.2:10648165-10648184 | None:intergenic | 30.0% | |
| ! | ACCACGACCTAAATTATTTT+AGG | + | chr8.2:10648589-10648608 | None:intergenic | 30.0% |
| ! | TGACAATACTAATTGGTGAT+TGG | + | chr8.2:10649786-10649805 | None:intergenic | 30.0% |
| !! | CATTGATTACACAGCTTTTA+AGG | + | chr8.2:10648482-10648501 | None:intergenic | 30.0% |
| !! | GGATGATTAAATTTTGATGG+TGG | + | chr8.2:10647955-10647974 | None:intergenic | 30.0% |
| !! | GTTGCTTTGGATTACAATTT+TGG | - | chr8.2:10648937-10648956 | MS.gene26811:intron | 30.0% |
| !! | TACAAAGTGTTGTCAAATAG+CGG | - | chr8.2:10649883-10649902 | MS.gene26811:intron | 30.0% |
| !! | TAGAACTGGATGTCTTATTT+GGG | - | chr8.2:10649363-10649382 | MS.gene26811:intron | 30.0% |
| !!! | ATTTTGGGATTTTAGTGGTT+TGG | + | chr8.2:10647734-10647753 | None:intergenic | 30.0% |
| AAATAGCGGTTATAGCATTG+CGG | - | chr8.2:10649897-10649916 | MS.gene26811:intron | 35.0% | |
| AACAAATCGTCATTGTTCTG+CGG | - | chr8.2:10649848-10649867 | MS.gene26811:intron | 35.0% | |
| AGAAAATTGTGACATAGGAC+TGG | - | chr8.2:10649739-10649758 | MS.gene26811:intron | 35.0% | |
| AGGAAACCTTATCCAAATAC+TGG | + | chr8.2:10650444-10650463 | None:intergenic | 35.0% | |
| ATTCCGTACATTTCAGTTTG+TGG | + | chr8.2:10648355-10648374 | None:intergenic | 35.0% | |
| CACAACAAAGAAGAGATCTT+CGG | - | chr8.2:10649240-10649259 | MS.gene26811:CDS | 35.0% | |
| GAAGAGTTCAAACCAGTATT+TGG | - | chr8.2:10650429-10650448 | MS.gene26811:intron | 35.0% | |
| GGATACGAAAATAAGAAGGA+AGG | - | chr8.2:10648659-10648678 | MS.gene26811:intron | 35.0% | |
| GTAGTTTAGCGATAATGTAG+GGG | + | chr8.2:10648163-10648182 | None:intergenic | 35.0% | |
| GTTTGTGGTGCAATTTGATT+CGG | + | chr8.2:10648064-10648083 | None:intergenic | 35.0% | |
| TATGGTATGCTCAAATTGGT+TGG | + | chr8.2:10650047-10650066 | None:intergenic | 35.0% | |
| TCTTACCAATGCTCTTGATT+TGG | - | chr8.2:10648186-10648205 | MS.gene26811:intron | 35.0% | |
| TGAAAAAGGAGTAAAAGAGG+TGG | + | chr8.2:10648869-10648888 | None:intergenic | 35.0% | |
| TGATAAGACCAAAAAGGACT+GGG | - | chr8.2:10650354-10650373 | MS.gene26811:intron | 35.0% | |
| TTCCCACAAACTGAAATGTA+CGG | - | chr8.2:10648349-10648368 | MS.gene26811:intron | 35.0% | |
| TTCCGTACATTTCAGTTTGT+GGG | + | chr8.2:10648354-10648373 | None:intergenic | 35.0% | |
| TTGATAAGACCAAAAAGGAC+TGG | - | chr8.2:10650353-10650372 | MS.gene26811:intron | 35.0% | |
| TTGCTTCCTTAACTAGTGTT+CGG | + | chr8.2:10648444-10648463 | None:intergenic | 35.0% | |
| ! | CTAATCCAAATCAAGAGCAT+TGG | + | chr8.2:10648194-10648213 | None:intergenic | 35.0% |
| ! | GGACAATTTTCCATTTGAAG+TGG | - | chr8.2:10650071-10650090 | MS.gene26811:intron | 35.0% |
| ! | GTAGAACTGGATGTCTTATT+TGG | - | chr8.2:10649362-10649381 | MS.gene26811:intron | 35.0% |
| ! | GTCCTATGTCACAATTTTCT+TGG | + | chr8.2:10649739-10649758 | None:intergenic | 35.0% |
| ! | GTGGTTTTTGCAGTAGATTT+AGG | + | chr8.2:10649223-10649242 | None:intergenic | 35.0% |
| ! | TTTCATGCTAGTTGTTGCTT+TGG | - | chr8.2:10648924-10648943 | MS.gene26811:intron | 35.0% |
| !! | GATGCATTTTGATGCTTCTA+AGG | - | chr8.2:10647851-10647870 | MS.gene26811:CDS | 35.0% |
| !! | TGAGACTTTGAGATTCAACT+TGG | + | chr8.2:10647813-10647832 | None:intergenic | 35.0% |
| !!! | TCGTATCCCTTTTTTAACCA+TGG | + | chr8.2:10648647-10648666 | None:intergenic | 35.0% |
| AAAACAGGATGTTACTGGTG+AGG | - | chr8.2:10649037-10649056 | MS.gene26811:CDS | 40.0% | |
| AAACAGGATGTTACTGGTGA+GGG | - | chr8.2:10649038-10649057 | MS.gene26811:CDS | 40.0% | |
| AAAGGACTGGGGAGAATTTA+AGG | - | chr8.2:10650366-10650385 | MS.gene26811:intron | 40.0% | |
| AAAGGGGATGTCTATGTTTG+TGG | + | chr8.2:10648079-10648098 | None:intergenic | 40.0% | |
| ACCTTGTGCATTTAGGCAAT+AGG | - | chr8.2:10649621-10649640 | MS.gene26811:intron | 40.0% | |
| ATCCCTTCCACGAAAACTTT+AGG | - | chr8.2:10647971-10647990 | MS.gene26811:CDS | 40.0% | |
| ATCTGTCAAAGAACCTGTTC+CGG | - | chr8.2:10648998-10649017 | MS.gene26811:intron | 40.0% | |
| ATGTTGTCAATTGCGGATCA+CGG | + | chr8.2:10649953-10649972 | None:intergenic | 40.0% | |
| CCTTGTGCATTTAGGCAATA+GGG | - | chr8.2:10649622-10649641 | MS.gene26811:intron | 40.0% | |
| CGAAGATCTCTTCTTTGTTG+TGG | + | chr8.2:10649242-10649261 | None:intergenic | 40.0% | |
| GAACGAAAACAGGATGTTAC+TGG | - | chr8.2:10649032-10649051 | MS.gene26811:CDS | 40.0% | |
| GATAAGACCAAAAAGGACTG+GGG | - | chr8.2:10650355-10650374 | MS.gene26811:intron | 40.0% | |
| GCAACCCTGTTATAACATAG+TGG | - | chr8.2:10649819-10649838 | MS.gene26811:intron | 40.0% | |
| GCTTGTGGATTCTGATTCAA+AGG | - | chr8.2:10650243-10650262 | MS.gene26811:intron | 40.0% | |
| GGAACCAATGTTGTCAATTG+CGG | + | chr8.2:10649960-10649979 | None:intergenic | 40.0% | |
| GGGAAAAACCTTGTGCATTT+AGG | - | chr8.2:10649614-10649633 | MS.gene26811:intron | 40.0% | |
| GTAATCTGTTCGCTGCAAAA+AGG | + | chr8.2:10650464-10650483 | None:intergenic | 40.0% | |
| TGATCCGCAATTGACAACAT+TGG | - | chr8.2:10649953-10649972 | MS.gene26811:intron | 40.0% | |
| TGCTTCCTTAACTAGTGTTC+GGG | + | chr8.2:10648443-10648462 | None:intergenic | 40.0% | |
| TGTGGATTCTGATTCAAAGG+AGG | - | chr8.2:10650246-10650265 | MS.gene26811:intron | 40.0% | |
| ! | AAATTCTCCCCAGTCCTTTT+TGG | + | chr8.2:10650365-10650384 | None:intergenic | 40.0% |
| ! | ACTCCTAAAGTTTTCGTGGA+AGG | + | chr8.2:10647977-10647996 | None:intergenic | 40.0% |
| ! | CTCCTAAAGTTTTCGTGGAA+GGG | + | chr8.2:10647976-10647995 | None:intergenic | 40.0% |
| ! | CTGACTAAAAATAGGAGCAC+TGG | + | chr8.2:10649575-10649594 | None:intergenic | 40.0% |
| ! | GATGACTCCTAAAGTTTTCG+TGG | + | chr8.2:10647981-10648000 | None:intergenic | 40.0% |
| ! | TAACATCCTGTTTTCGTTCC+AGG | + | chr8.2:10649031-10649050 | None:intergenic | 40.0% |
| !! | AAGAAGGAAGGTTTCTGGTT+CGG | - | chr8.2:10648671-10648690 | MS.gene26811:intron | 40.0% |
| !! | AAGCTCAAGTTGATGCCATA+TGG | - | chr8.2:10649143-10649162 | MS.gene26811:intron | 40.0% |
| !! | AGCTCAAGTTGATGCCATAT+GGG | - | chr8.2:10649144-10649163 | MS.gene26811:intron | 40.0% |
| !! | CTGGATGTCTTATTTGGGAT+TGG | - | chr8.2:10649368-10649387 | MS.gene26811:intron | 40.0% |
| !! | GCATTTTGATGCTTCTAAGG+TGG | - | chr8.2:10647854-10647873 | MS.gene26811:CDS | 40.0% |
| !!! | CAGTGCTCCTATTTTTAGTC+AGG | - | chr8.2:10649573-10649592 | MS.gene26811:intron | 40.0% |
| AAGCGAGCAAGCAATATCCA+TGG | - | chr8.2:10648627-10648646 | MS.gene26811:intron | 45.0% | |
| AGTGTCCCGAACACTAGTTA+AGG | - | chr8.2:10648435-10648454 | MS.gene26811:intron | 45.0% | |
| CAATTGCGGATCACGGAAAA+TGG | + | chr8.2:10649946-10649965 | None:intergenic | 45.0% | |
| CCCTATTGCCTAAATGCACA+AGG | + | chr8.2:10649625-10649644 | None:intergenic | 45.0% | |
| TCAAAGTGTACCTTGTGTGC+TGG | - | chr8.2:10649428-10649447 | MS.gene26811:intron | 45.0% | |
| TCTGTCAAAGAACCTGTTCC+GGG | - | chr8.2:10648999-10649018 | MS.gene26811:intron | 45.0% | |
| TGCATTTAGGCAATAGGGAG+AGG | - | chr8.2:10649627-10649646 | MS.gene26811:intron | 45.0% | |
| TTAACTAGTGTTCGGGACAC+TGG | + | chr8.2:10648436-10648455 | None:intergenic | 45.0% | |
| TTTCGTTTCTGCCTCAAGCA+GGG | - | chr8.2:10649518-10649537 | MS.gene26811:intron | 45.0% | |
| ! | AAGGTTTTTCCCACTTCAGC+TGG | + | chr8.2:10649606-10649625 | None:intergenic | 45.0% |
| !!! | GGGATTTTAGTGGTTTGGTG+AGG | + | chr8.2:10647729-10647748 | None:intergenic | 45.0% |
| !! | TATATATATAAATATGAAAA+AGG | + | chr8.2:10648883-10648902 | None:intergenic | 5.0% |
| !! | TTTAAATAATTAAATATATG+AGG | + | chr8.2:10648018-10648037 | None:intergenic | 5.0% |
| !!! | TTTTTTATTTTTTTTGAAAA+GGG | + | chr8.2:10648128-10648147 | None:intergenic | 5.0% |
| !!! | TTTTTTTATTTTTTTTGAAA+AGG | + | chr8.2:10648129-10648148 | None:intergenic | 5.0% |
| ACAGCGTCGTCTTGCATATC+TGG | + | chr8.2:10650541-10650560 | None:intergenic | 50.0% | |
| ACCGTGAATTTGAGCGAGAG+AGG | - | chr8.2:10650482-10650501 | MS.gene26811:intron | 50.0% | |
| ACTGAGGTTCGAGACTTTGC+TGG | - | chr8.2:10650199-10650218 | MS.gene26811:intron | 50.0% | |
| AGGTGCTAATCCAGCTGAAG+TGG | - | chr8.2:10649593-10649612 | MS.gene26811:intron | 50.0% | |
| AGTGTACCTTGTGTGCTGGA+AGG | - | chr8.2:10649432-10649451 | MS.gene26811:intron | 50.0% | |
| CACGATTGGCATTGCAATCC+AGG | - | chr8.2:10650509-10650528 | MS.gene26811:intron | 50.0% | |
| CCCTCTCTCGCTCAAATTCA+CGG | + | chr8.2:10650486-10650505 | None:intergenic | 50.0% | |
| CCGAAGACAACTGAATCTCC+CGG | - | chr8.2:10649393-10649412 | MS.gene26811:intron | 50.0% | |
| CCGGGAGATTCAGTTGTCTT+CGG | + | chr8.2:10649396-10649415 | None:intergenic | 50.0% | |
| CCGTGAATTTGAGCGAGAGA+GGG | - | chr8.2:10650483-10650502 | MS.gene26811:intron | 50.0% | |
| CGAAGACAACTGAATCTCCC+GGG | - | chr8.2:10649394-10649413 | MS.gene26811:intron | 50.0% | |
| CTGTCAAAGAACCTGTTCCG+GGG | - | chr8.2:10649000-10649019 | MS.gene26811:intron | 50.0% | |
| CTTTCGTTTCTGCCTCAAGC+AGG | - | chr8.2:10649517-10649536 | MS.gene26811:intron | 50.0% | |
| GAAGGCAGTACAAGTGACGA+AGG | - | chr8.2:10649450-10649469 | MS.gene26811:intron | 50.0% | |
| GGAAAGCCTGGAACGAAAAC+AGG | - | chr8.2:10649022-10649041 | MS.gene26811:CDS | 50.0% | |
| GGATCACGGAAAATGGCAGT+TGG | + | chr8.2:10649939-10649958 | None:intergenic | 50.0% | |
| GGTGCTAATCCAGCTGAAGT+GGG | - | chr8.2:10649594-10649613 | MS.gene26811:intron | 50.0% | |
| TGTCAAAGAACCTGTTCCGG+GGG | - | chr8.2:10649001-10649020 | MS.gene26811:CDS | 50.0% | |
| TTCGTTTCTGCCTCAAGCAG+GGG | - | chr8.2:10649519-10649538 | MS.gene26811:intron | 50.0% | |
| TTGCATATCTGGTCGCTTCC+TGG | + | chr8.2:10650530-10650549 | None:intergenic | 50.0% | |
| ! | ACTTTGAGAAGCACACTGCC+CGG | + | chr8.2:10649415-10649434 | None:intergenic | 50.0% |
| ! | GAGAGAAAAAAGAGCGCGCA+AGG | + | chr8.2:10648755-10648774 | None:intergenic | 50.0% |
| !! | AAGAGCGCGCAAGGTTTTAC+CGG | + | chr8.2:10648746-10648765 | None:intergenic | 50.0% |
| AGGACAGCATCCACAGCAGA+AGG | + | chr8.2:10650298-10650317 | None:intergenic | 55.0% | |
| CACAACTTTCCCCCTGCTTG+AGG | + | chr8.2:10649532-10649551 | None:intergenic | 55.0% | |
| CTCAAGCAGGGGGAAAGTTG+TGG | - | chr8.2:10649530-10649549 | MS.gene26811:intron | 55.0% | |
| GGCGTGACGATAGATAGCGA+AGG | + | chr8.2:10648704-10648723 | None:intergenic | 55.0% | |
| GTACTGCCTTCCAGCACACA+AGG | + | chr8.2:10649441-10649460 | None:intergenic | 55.0% | |
| TCGTTTCTGCCTCAAGCAGG+GGG | - | chr8.2:10649520-10649539 | MS.gene26811:intron | 55.0% | |
| TTTCGTTCCAGGCTTTCCCC+CGG | + | chr8.2:10649020-10649039 | None:intergenic | 55.0% | |
| ! | AGCAGAAGGTGCAGGAGCTT+TGG | + | chr8.2:10650284-10650303 | None:intergenic | 55.0% |
| ! | CTTTGAGAAGCACACTGCCC+GGG | + | chr8.2:10649414-10649433 | None:intergenic | 55.0% |
| AGCTCCTGCACCTTCTGCTG+TGG | - | chr8.2:10650285-10650304 | MS.gene26811:intron | 60.0% | |
| CGCTATCTATCGTCACGCCG+CGG | - | chr8.2:10648705-10648724 | MS.gene26811:intron | 60.0% | |
| GCGAGAGAGGGATGCACGAT+TGG | - | chr8.2:10650495-10650514 | MS.gene26811:intron | 60.0% | |
| GCTATCTATCGTCACGCCGC+GGG | - | chr8.2:10648706-10648725 | MS.gene26811:intron | 60.0% | |
| TGCTGCTGCTGCTCTTGCAG+CGG | - | chr8.2:10649482-10649501 | MS.gene26811:intron | 60.0% | |
| ! | AGCGCGCAAGGTTTTACCGG+CGG | + | chr8.2:10648743-10648762 | None:intergenic | 60.0% |
| ! | GCATCCACAGCAGAAGGTGC+AGG | + | chr8.2:10650292-10650311 | None:intergenic | 60.0% |
| ACCTGTTCCGGGGGAAAGCC+TGG | - | chr8.2:10649010-10649029 | MS.gene26811:CDS | 65.0% | |
| GCGGGAGTGATGAGTTCCGC+CGG | - | chr8.2:10648724-10648743 | MS.gene26811:CDS | 65.0% | |
| GGCGGAACTCATCACTCCCG+CGG | + | chr8.2:10648725-10648744 | None:intergenic | 65.0% | |
| TCCAGGCTTTCCCCCGGAAC+AGG | + | chr8.2:10649014-10649033 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 10647698 | 10650564 | 10647698 | ID=MS.gene26811 |
| chr8.2 | mRNA | 10647698 | 10650564 | 10647698 | ID=MS.gene26811.t1;Parent=MS.gene26811 |
| chr8.2 | exon | 10650549 | 10650564 | 10650549 | ID=MS.gene26811.t1.exon1;Parent=MS.gene26811.t1 |
| chr8.2 | CDS | 10650549 | 10650564 | 10650549 | ID=cds.MS.gene26811.t1;Parent=MS.gene26811.t1 |
| chr8.2 | exon | 10649209 | 10649289 | 10649209 | ID=MS.gene26811.t1.exon2;Parent=MS.gene26811.t1 |
| chr8.2 | CDS | 10649209 | 10649289 | 10649209 | ID=cds.MS.gene26811.t1;Parent=MS.gene26811.t1 |
| chr8.2 | exon | 10649001 | 10649125 | 10649001 | ID=MS.gene26811.t1.exon3;Parent=MS.gene26811.t1 |
| chr8.2 | CDS | 10649001 | 10649125 | 10649001 | ID=cds.MS.gene26811.t1;Parent=MS.gene26811.t1 |
| chr8.2 | exon | 10648711 | 10648896 | 10648711 | ID=MS.gene26811.t1.exon4;Parent=MS.gene26811.t1 |
| chr8.2 | CDS | 10648711 | 10648896 | 10648711 | ID=cds.MS.gene26811.t1;Parent=MS.gene26811.t1 |
| chr8.2 | exon | 10647698 | 10648066 | 10647698 | ID=MS.gene26811.t1.exon5;Parent=MS.gene26811.t1 |
| chr8.2 | CDS | 10647698 | 10648066 | 10647698 | ID=cds.MS.gene26811.t1;Parent=MS.gene26811.t1 |
| Gene Sequence |
| Protein sequence |
