Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061545.t1 | XP_024635654.1 | 92.2 | 218 | 14 | 1 | 1 | 215 | 1 | 218 | 3.00E-102 | 381.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061545.t1 | Q9FJK3 | 63.3 | 177 | 65 | 0 | 1 | 177 | 1 | 177 | 4.8e-56 | 219.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061545.t1 | G7J8R0 | 92.2 | 218 | 14 | 1 | 1 | 215 | 1 | 218 | 2.2e-102 | 381.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene061545.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04997 | MS.gene061545 | 0.92067 | 9.54E-88 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061545.t1 | MTR_3g065100 | 92.202 | 218 | 14 | 1 | 1 | 215 | 1 | 218 | 1.98e-136 | 382 |
| MS.gene061545.t1 | MTR_3g466980 | 55.093 | 216 | 78 | 2 | 1 | 216 | 1 | 197 | 3.19e-78 | 234 |
| MS.gene061545.t1 | MTR_8g036130 | 59.276 | 221 | 82 | 5 | 1 | 214 | 1 | 220 | 1.44e-75 | 228 |
| MS.gene061545.t1 | MTR_4g032620 | 51.389 | 216 | 98 | 3 | 1 | 215 | 1 | 210 | 2.44e-71 | 217 |
| MS.gene061545.t1 | MTR_4g031910 | 62.195 | 164 | 61 | 1 | 1 | 163 | 1 | 164 | 1.14e-62 | 195 |
| MS.gene061545.t1 | MTR_4g032290 | 55.340 | 206 | 83 | 4 | 1 | 198 | 1 | 205 | 4.43e-58 | 183 |
| MS.gene061545.t1 | MTR_3g466830 | 51.899 | 158 | 76 | 0 | 3 | 160 | 2 | 159 | 2.85e-55 | 174 |
| MS.gene061545.t1 | MTR_4g032260 | 61.290 | 155 | 59 | 1 | 1 | 154 | 1 | 155 | 1.32e-54 | 172 |
| MS.gene061545.t1 | MTR_4g063790 | 52.532 | 158 | 74 | 1 | 1 | 157 | 1 | 158 | 4.16e-53 | 169 |
| MS.gene061545.t1 | MTR_2g035610 | 68.033 | 122 | 39 | 0 | 1 | 122 | 1 | 122 | 1.27e-52 | 166 |
| MS.gene061545.t1 | MTR_3g466890 | 49.682 | 157 | 79 | 0 | 3 | 159 | 2 | 158 | 2.46e-49 | 159 |
| MS.gene061545.t1 | MTR_3g467080 | 49.032 | 155 | 78 | 1 | 1 | 154 | 1 | 155 | 4.10e-49 | 158 |
| MS.gene061545.t1 | MTR_5g047580 | 50.000 | 156 | 77 | 1 | 1 | 156 | 1 | 155 | 8.58e-47 | 152 |
| MS.gene061545.t1 | MTR_5g075380 | 43.396 | 159 | 90 | 0 | 1 | 159 | 1 | 159 | 2.71e-46 | 151 |
| MS.gene061545.t1 | MTR_3g031100 | 38.767 | 227 | 130 | 5 | 1 | 224 | 1 | 221 | 1.30e-44 | 149 |
| MS.gene061545.t1 | MTR_2g016210 | 41.294 | 201 | 106 | 3 | 1 | 197 | 1 | 193 | 1.11e-42 | 144 |
| MS.gene061545.t1 | MTR_1g077390 | 46.497 | 157 | 83 | 1 | 1 | 157 | 1 | 156 | 3.64e-42 | 140 |
| MS.gene061545.t1 | MTR_7g011950 | 50.955 | 157 | 76 | 1 | 1 | 157 | 1 | 156 | 1.17e-41 | 139 |
| MS.gene061545.t1 | MTR_1g090697 | 42.949 | 156 | 88 | 1 | 1 | 156 | 1 | 155 | 3.71e-41 | 137 |
| MS.gene061545.t1 | MTR_1g077320 | 50.318 | 157 | 77 | 1 | 1 | 157 | 1 | 156 | 3.94e-40 | 135 |
| MS.gene061545.t1 | MTR_1g084950 | 50.000 | 156 | 77 | 1 | 1 | 156 | 1 | 155 | 4.11e-40 | 135 |
| MS.gene061545.t1 | MTR_3g031240 | 40.123 | 162 | 96 | 1 | 1 | 161 | 1 | 162 | 1.97e-39 | 134 |
| MS.gene061545.t1 | MTR_4g028720 | 48.408 | 157 | 80 | 1 | 1 | 157 | 1 | 156 | 3.12e-38 | 130 |
| MS.gene061545.t1 | MTR_1g090710 | 40.127 | 157 | 92 | 2 | 1 | 156 | 1 | 156 | 3.69e-37 | 127 |
| MS.gene061545.t1 | MTR_1g090783 | 41.558 | 154 | 89 | 1 | 3 | 156 | 2 | 154 | 3.79e-37 | 127 |
| MS.gene061545.t1 | MTR_3g465410 | 46.923 | 130 | 68 | 1 | 29 | 157 | 1 | 130 | 1.77e-36 | 125 |
| MS.gene061545.t1 | MTR_3g466900 | 45.312 | 128 | 70 | 0 | 32 | 159 | 2 | 129 | 1.91e-36 | 125 |
| MS.gene061545.t1 | MTR_2g035580 | 43.506 | 154 | 87 | 0 | 1 | 154 | 1 | 154 | 4.51e-36 | 125 |
| MS.gene061545.t1 | MTR_1g077300 | 48.408 | 157 | 78 | 2 | 1 | 157 | 1 | 154 | 8.16e-35 | 121 |
| MS.gene061545.t1 | MTR_3g466930 | 45.312 | 128 | 70 | 0 | 32 | 159 | 2 | 129 | 8.31e-35 | 120 |
| MS.gene061545.t1 | MTR_5g047560 | 41.026 | 156 | 75 | 2 | 1 | 156 | 1 | 139 | 6.12e-31 | 111 |
| MS.gene061545.t1 | MTR_4g028800 | 69.444 | 72 | 20 | 1 | 1 | 72 | 1 | 70 | 4.98e-29 | 104 |
| MS.gene061545.t1 | MTR_7g055800 | 47.899 | 119 | 34 | 2 | 1 | 119 | 1 | 91 | 7.90e-29 | 104 |
| MS.gene061545.t1 | MTR_7g055790 | 51.351 | 111 | 36 | 1 | 1 | 111 | 59 | 151 | 8.80e-26 | 98.2 |
| MS.gene061545.t1 | MTR_4g084780 | 94.000 | 50 | 3 | 0 | 74 | 123 | 1 | 50 | 2.11e-25 | 97.4 |
| MS.gene061545.t1 | MTR_4g019670 | 39.344 | 122 | 71 | 1 | 1 | 119 | 1 | 122 | 2.57e-23 | 97.8 |
| MS.gene061545.t1 | MTR_7g106510 | 38.525 | 122 | 72 | 1 | 1 | 119 | 1 | 122 | 7.99e-23 | 96.3 |
| MS.gene061545.t1 | MTR_7g055940 | 45.283 | 106 | 30 | 2 | 1 | 106 | 1 | 78 | 1.20e-22 | 87.8 |
| MS.gene061545.t1 | MTR_6g018920 | 28.700 | 223 | 125 | 7 | 1 | 217 | 1 | 195 | 4.16e-21 | 90.1 |
| MS.gene061545.t1 | MTR_2g035590 | 50.562 | 89 | 43 | 1 | 74 | 161 | 1 | 89 | 1.43e-19 | 80.5 |
| MS.gene061545.t1 | MTR_3g093900 | 34.167 | 120 | 79 | 0 | 3 | 122 | 6 | 125 | 1.80e-19 | 86.7 |
| MS.gene061545.t1 | MTR_1g114730 | 35.398 | 113 | 66 | 3 | 1 | 107 | 1 | 112 | 1.91e-17 | 80.1 |
| MS.gene061545.t1 | MTR_6g005450 | 26.818 | 220 | 139 | 7 | 1 | 213 | 1 | 205 | 4.50e-17 | 79.0 |
| MS.gene061545.t1 | MTR_6g005440 | 26.087 | 184 | 120 | 5 | 1 | 178 | 1 | 174 | 2.16e-15 | 73.9 |
| MS.gene061545.t1 | MTR_2g049610 | 25.333 | 225 | 150 | 8 | 1 | 220 | 1 | 212 | 1.32e-12 | 65.5 |
| MS.gene061545.t1 | MTR_4g045977 | 24.500 | 200 | 133 | 5 | 1 | 190 | 1 | 192 | 6.11e-12 | 64.7 |
| MS.gene061545.t1 | MTR_4g107170 | 26.627 | 169 | 113 | 4 | 1 | 166 | 1 | 161 | 1.41e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061545.t1 | AT5G48670 | 56.164 | 219 | 83 | 3 | 1 | 206 | 1 | 219 | 1.21e-70 | 218 |
| MS.gene061545.t1 | AT1G65300 | 43.678 | 174 | 98 | 0 | 3 | 176 | 2 | 175 | 1.10e-50 | 166 |
| MS.gene061545.t1 | AT1G65330 | 47.222 | 180 | 93 | 1 | 3 | 180 | 2 | 181 | 2.94e-50 | 165 |
| MS.gene061545.t1 | AT5G26630 | 47.120 | 191 | 99 | 2 | 1 | 191 | 1 | 189 | 1.62e-48 | 159 |
| MS.gene061545.t1 | AT3G05860 | 44.505 | 182 | 96 | 2 | 1 | 177 | 1 | 182 | 2.29e-48 | 159 |
| MS.gene061545.t1 | AT3G05860 | 51.007 | 149 | 73 | 0 | 1 | 149 | 1 | 149 | 2.56e-48 | 158 |
| MS.gene061545.t1 | AT3G05860 | 41.709 | 199 | 111 | 2 | 1 | 194 | 1 | 199 | 5.44e-48 | 159 |
| MS.gene061545.t1 | AT5G26650 | 44.654 | 159 | 88 | 0 | 4 | 162 | 2 | 160 | 1.44e-43 | 150 |
| MS.gene061545.t1 | AT5G27960 | 44.025 | 159 | 89 | 0 | 4 | 162 | 2 | 160 | 1.46e-42 | 146 |
| MS.gene061545.t1 | AT1G31630 | 42.405 | 158 | 90 | 1 | 3 | 160 | 2 | 158 | 1.42e-41 | 144 |
| MS.gene061545.t1 | AT5G27810 | 66.667 | 93 | 31 | 0 | 29 | 121 | 1 | 93 | 2.45e-40 | 134 |
| MS.gene061545.t1 | AT1G31640 | 42.138 | 159 | 91 | 1 | 3 | 161 | 2 | 159 | 1.13e-38 | 139 |
| MS.gene061545.t1 | AT2G28700 | 35.135 | 185 | 111 | 4 | 1 | 179 | 1 | 182 | 3.35e-34 | 125 |
| MS.gene061545.t1 | AT5G26580 | 39.375 | 160 | 83 | 1 | 1 | 160 | 1 | 146 | 1.10e-31 | 118 |
| MS.gene061545.t1 | AT1G22590 | 35.256 | 156 | 98 | 1 | 1 | 156 | 1 | 153 | 1.72e-26 | 100 |
| MS.gene061545.t1 | AT2G40210 | 43.902 | 123 | 69 | 0 | 1 | 123 | 1 | 123 | 1.13e-23 | 97.4 |
| MS.gene061545.t1 | AT5G06500 | 37.815 | 119 | 74 | 0 | 1 | 119 | 1 | 119 | 2.41e-21 | 89.0 |
| MS.gene061545.t1 | AT5G55690 | 28.846 | 208 | 112 | 4 | 1 | 187 | 1 | 193 | 7.87e-18 | 80.5 |
| MS.gene061545.t1 | AT5G55690 | 28.846 | 208 | 112 | 4 | 1 | 187 | 1 | 193 | 7.87e-18 | 80.5 |
| MS.gene061545.t1 | AT5G58890 | 36.036 | 111 | 64 | 2 | 1 | 105 | 1 | 110 | 1.85e-13 | 68.6 |
| MS.gene061545.t1 | AT1G77950 | 37.895 | 95 | 58 | 1 | 1 | 95 | 1 | 94 | 4.98e-11 | 61.2 |
| MS.gene061545.t1 | AT1G77950 | 37.895 | 95 | 58 | 1 | 1 | 95 | 1 | 94 | 4.98e-11 | 61.2 |
| MS.gene061545.t1 | AT1G77950 | 37.895 | 95 | 58 | 1 | 1 | 95 | 1 | 94 | 4.98e-11 | 61.2 |
| MS.gene061545.t1 | AT1G77950 | 37.895 | 95 | 58 | 1 | 1 | 95 | 1 | 94 | 4.98e-11 | 61.2 |
| MS.gene061545.t1 | AT5G35120 | 32.967 | 91 | 61 | 0 | 84 | 174 | 1 | 91 | 5.06e-11 | 58.2 |
| MS.gene061545.t1 | AT1G59930 | 34.211 | 114 | 64 | 3 | 84 | 192 | 1 | 108 | 5.55e-11 | 58.9 |
Find 44 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATTATCCTTTCTTTGTT+TGG | 0.241148 | 3.2:+60488928 | None:intergenic |
| TGTCCATTCTCTTCAATCTT+AGG | 0.274749 | 3.2:+60488695 | None:intergenic |
| TTTATGAACTTGATGAATAA+TGG | 0.322309 | 3.2:-60488611 | MS.gene061545:CDS |
| ATGCTTATATTGTGCATAAC+TGG | 0.326699 | 3.2:+60488860 | None:intergenic |
| GAAGAAAGGTCTAATGAAAA+AGG | 0.328619 | 3.2:-60489161 | MS.gene061545:CDS |
| CATGGTTGATTTGAATGATA+TGG | 0.333296 | 3.2:-60488840 | MS.gene061545:CDS |
| GAGTCATGGTCAACATGTTT+TGG | 0.338044 | 3.2:-60488669 | MS.gene061545:CDS |
| GAGGTTTGGCCGTCTCCTTT+AGG | 0.389676 | 3.2:-60489067 | MS.gene061545:CDS |
| AATGGTCGTAGCACCAACTA+TGG | 0.416139 | 3.2:-60488732 | MS.gene061545:CDS |
| ACCTCTGGTTGAGGATCATA+AGG | 0.423494 | 3.2:+60489085 | None:intergenic |
| ATGATCCTCAACCAGAGGTT+TGG | 0.426927 | 3.2:-60489081 | MS.gene061545:CDS |
| AGTATTTGAAAGATATCAAT+AGG | 0.431729 | 3.2:-60488802 | MS.gene061545:CDS |
| AAAGGAGACGGCCAAACCTC+TGG | 0.476094 | 3.2:+60489070 | None:intergenic |
| GTCTCCTTTAGGAGTTCAAA+GGG | 0.477655 | 3.2:-60489056 | MS.gene061545:CDS |
| CGTCTCCTTTAGGAGTTCAA+AGG | 0.479690 | 3.2:-60489057 | MS.gene061545:CDS |
| GGAAGGCAACATTCAAGAAA+AGG | 0.489208 | 3.2:-60489183 | MS.gene061545:CDS |
| TCAATTGACCAAACAAAGAA+AGG | 0.490968 | 3.2:-60488936 | MS.gene061545:CDS |
| GCACCAACTATGGTGGCTAA+TGG | 0.492096 | 3.2:-60488722 | MS.gene061545:CDS |
| TTTGAGGCAGCGGATTCAAA+AGG | 0.492900 | 3.2:-60488966 | MS.gene061545:CDS |
| GGAGGGTTGAAATGTTGAGC+AGG | 0.493102 | 3.2:-60488781 | MS.gene061545:CDS |
| CTACCTAAGATTGAAGAGAA+TGG | 0.512642 | 3.2:-60488698 | MS.gene061545:CDS |
| AGGTCAAGGTCAAACTCAAA+TGG | 0.513312 | 3.2:-60488750 | MS.gene061545:CDS |
| AGCACCCTTTGAACTCCTAA+AGG | 0.514637 | 3.2:+60489052 | None:intergenic |
| GTTGAAATGTTGAGCAGGAA+TGG | 0.522645 | 3.2:-60488776 | MS.gene061545:CDS |
| AATCAACGACTCTGCGAGGA+AGG | 0.536639 | 3.2:-60489200 | MS.gene061545:CDS |
| AGTCCATTAGCCACCATAGT+TGG | 0.539716 | 3.2:+60488719 | None:intergenic |
| TTTGAAAGATATCAATAGGA+GGG | 0.549226 | 3.2:-60488798 | MS.gene061545:CDS |
| AGCAGGAATGGTCAAGGTCA+AGG | 0.553703 | 3.2:-60488764 | MS.gene061545:CDS |
| GAGAATGGACAAGGGAGTCA+TGG | 0.556512 | 3.2:-60488683 | MS.gene061545:CDS |
| ACATTCAAGAAAAGGAAGAA+AGG | 0.560908 | 3.2:-60489175 | MS.gene061545:CDS |
| GACGGCCAAACCTCTGGTTG+AGG | 0.565198 | 3.2:+60489076 | None:intergenic |
| ATTTGAAAGATATCAATAGG+AGG | 0.602830 | 3.2:-60488799 | MS.gene061545:CDS |
| TCCTTATGATCCTCAACCAG+AGG | 0.603338 | 3.2:-60489086 | MS.gene061545:CDS |
| GCATAACTGGATCAGCACTA+AGG | 0.605501 | 3.2:+60488873 | None:intergenic |
| AAGATTGAAGAGAATGGACA+AGG | 0.608283 | 3.2:-60488692 | MS.gene061545:CDS |
| ATGAACTTGATGAATAATGG+TGG | 0.624781 | 3.2:-60488608 | MS.gene061545:intron |
| AGTGAACTCAGTACTCTATG+TGG | 0.630043 | 3.2:-60489136 | MS.gene061545:CDS |
| CTTTGAACTCCTAAAGGAGA+CGG | 0.641014 | 3.2:+60489058 | None:intergenic |
| AGTTATGCACAATATAAGCA+TGG | 0.643634 | 3.2:-60488858 | MS.gene061545:CDS |
| TTGATTTGAATGATATGGCA+TGG | 0.644556 | 3.2:-60488835 | MS.gene061545:CDS |
| ATGTTGAGCAGGAATGGTCA+AGG | 0.649347 | 3.2:-60488770 | MS.gene061545:CDS |
| GGTCGTAGCACCAACTATGG+TGG | 0.652064 | 3.2:-60488729 | MS.gene061545:CDS |
| TCATAATCAACGACTCTGCG+AGG | 0.671801 | 3.2:-60489204 | MS.gene061545:CDS |
| AGATTGAAGAGAATGGACAA+GGG | 0.691703 | 3.2:-60488691 | MS.gene061545:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATTCTTATAAACAATAC+AGG | + | chr3.2:60489124-60489143 | None:intergenic | 20.0% |
| !! | AGTATTTGAAAGATATCAAT+AGG | - | chr3.2:60488677-60488696 | MS.gene061545:CDS | 20.0% |
| !! | TTTATGAACTTGATGAATAA+TGG | - | chr3.2:60488868-60488887 | MS.gene061545:CDS | 20.0% |
| !!! | AAGTTGAATAAATATCGTTT+TGG | - | chr3.2:60489164-60489183 | MS.gene061545:CDS | 20.0% |
| !!! | TTATAAGAATGTTTGATTTC+TGG | - | chr3.2:60489131-60489150 | MS.gene061545:CDS | 20.0% |
| ! | ATTTGAAAGATATCAATAGG+AGG | - | chr3.2:60488680-60488699 | MS.gene061545:CDS | 25.0% |
| ! | TCTATTATCCTTTCTTTGTT+TGG | + | chr3.2:60488554-60488573 | None:intergenic | 25.0% |
| ! | TTAAGACAAAAATAAGTGAC+TGG | - | chr3.2:60489040-60489059 | MS.gene061545:CDS | 25.0% |
| ! | TTTGAAAGATATCAATAGGA+GGG | - | chr3.2:60488681-60488700 | MS.gene061545:CDS | 25.0% |
| !! | TTCAACGAAAAAAATGGATT+TGG | + | chr3.2:60488949-60488968 | None:intergenic | 25.0% |
| AACAACCAAATACAAAACGA+TGG | + | chr3.2:60488996-60489015 | None:intergenic | 30.0% | |
| ACATTCAAGAAAAGGAAGAA+AGG | - | chr3.2:60488304-60488323 | MS.gene061545:intron | 30.0% | |
| AGTTATGCACAATATAAGCA+TGG | - | chr3.2:60488621-60488640 | MS.gene061545:CDS | 30.0% | |
| ATGAACTTGATGAATAATGG+TGG | - | chr3.2:60488871-60488890 | MS.gene061545:CDS | 30.0% | |
| ATGCTTATATTGTGCATAAC+TGG | + | chr3.2:60488622-60488641 | None:intergenic | 30.0% | |
| ATTGGAACAAAGCAAAAAGA+TGG | - | chr3.2:60488474-60488493 | MS.gene061545:intron | 30.0% | |
| GAAGAAAGGTCTAATGAAAA+AGG | - | chr3.2:60488318-60488337 | MS.gene061545:intron | 30.0% | |
| TCAATTGACCAAACAAAGAA+AGG | - | chr3.2:60488543-60488562 | MS.gene061545:intron | 30.0% | |
| TGACTCTTCAACGAAAAAAA+TGG | + | chr3.2:60488955-60488974 | None:intergenic | 30.0% | |
| ! | TGTTACCATCGTTTTGTATT+TGG | - | chr3.2:60488988-60489007 | MS.gene061545:CDS | 30.0% |
| ! | TTGATTTGAATGATATGGCA+TGG | - | chr3.2:60488644-60488663 | MS.gene061545:CDS | 30.0% |
| !! | CATGGTTGATTTGAATGATA+TGG | - | chr3.2:60488639-60488658 | MS.gene061545:CDS | 30.0% |
| !! | TTTTTGCTTTGTTCCAATTC+AGG | + | chr3.2:60488472-60488491 | None:intergenic | 30.0% |
| AACTTGATGAATAATGGTGG+TGG | - | chr3.2:60488874-60488893 | MS.gene061545:CDS | 35.0% | |
| AAGATTGAAGAGAATGGACA+AGG | - | chr3.2:60488787-60488806 | MS.gene061545:CDS | 35.0% | |
| ACTTGATGAATAATGGTGGT+GGG | - | chr3.2:60488875-60488894 | MS.gene061545:CDS | 35.0% | |
| AGATTGAAGAGAATGGACAA+GGG | - | chr3.2:60488788-60488807 | MS.gene061545:CDS | 35.0% | |
| CTACCTAAGATTGAAGAGAA+TGG | - | chr3.2:60488781-60488800 | MS.gene061545:CDS | 35.0% | |
| TGTCCATTCTCTTCAATCTT+AGG | + | chr3.2:60488787-60488806 | None:intergenic | 35.0% | |
| ! | GTTCCAATTCAGGCATTTTT+CGG | + | chr3.2:60488462-60488481 | None:intergenic | 35.0% |
| ! | TTTTTCGTTGAAGAGTCATG+TGG | - | chr3.2:60488957-60488976 | MS.gene061545:CDS | 35.0% |
| !! | ACATGTTTTGGACATGAACA+TGG | - | chr3.2:60488822-60488841 | MS.gene061545:CDS | 35.0% |
| !!! | TGAACCAAGAGAGTTTTTTG+AGG | - | chr3.2:60488497-60488516 | MS.gene061545:intron | 35.0% |
| AACATGCAAATCCTAGACCA+TGG | + | chr3.2:60489076-60489095 | None:intergenic | 40.0% | |
| AGGTCAAGGTCAAACTCAAA+TGG | - | chr3.2:60488729-60488748 | MS.gene061545:CDS | 40.0% | |
| AGTGAACTCAGTACTCTATG+TGG | - | chr3.2:60488343-60488362 | MS.gene061545:intron | 40.0% | |
| ATTTGGCCAAAACCCATTTG+GGG | + | chr3.2:60488932-60488951 | None:intergenic | 40.0% | |
| CTTTGAACTCCTAAAGGAGA+CGG | + | chr3.2:60488424-60488443 | None:intergenic | 40.0% | |
| GAAATGTCAATCCCCCAAAT+GGG | - | chr3.2:60488917-60488936 | MS.gene061545:CDS | 40.0% | |
| GATTTGGCCAAAACCCATTT+GGG | + | chr3.2:60488933-60488952 | None:intergenic | 40.0% | |
| GGAAGGCAACATTCAAGAAA+AGG | - | chr3.2:60488296-60488315 | MS.gene061545:intron | 40.0% | |
| GTTCCGAAAAATGCCTGAAT+TGG | - | chr3.2:60488456-60488475 | MS.gene061545:intron | 40.0% | |
| GTTGAAATGTTGAGCAGGAA+TGG | - | chr3.2:60488703-60488722 | MS.gene061545:CDS | 40.0% | |
| ! | CTTGATGAATAATGGTGGTG+GGG | - | chr3.2:60488876-60488895 | MS.gene061545:CDS | 40.0% |
| ! | GAGTCATGGTCAACATGTTT+TGG | - | chr3.2:60488810-60488829 | MS.gene061545:CDS | 40.0% |
| ! | GTCTCCTTTAGGAGTTCAAA+GGG | - | chr3.2:60488423-60488442 | MS.gene061545:intron | 40.0% |
| !!! | AAGAGAGTTTTTTGAGGCAG+CGG | - | chr3.2:60488503-60488522 | MS.gene061545:intron | 40.0% |
| AATGGTCGTAGCACCAACTA+TGG | - | chr3.2:60488747-60488766 | MS.gene061545:CDS | 45.0% | |
| ACCTCTGGTTGAGGATCATA+AGG | + | chr3.2:60488397-60488416 | None:intergenic | 45.0% | |
| AGCACCCTTTGAACTCCTAA+AGG | + | chr3.2:60488430-60488449 | None:intergenic | 45.0% | |
| AGTCCATTAGCCACCATAGT+TGG | + | chr3.2:60488763-60488782 | None:intergenic | 45.0% | |
| ATGATCCTCAACCAGAGGTT+TGG | - | chr3.2:60488398-60488417 | MS.gene061545:intron | 45.0% | |
| ATGTTGAGCAGGAATGGTCA+AGG | - | chr3.2:60488709-60488728 | MS.gene061545:CDS | 45.0% | |
| GATTTGTCCATCCATGGTCT+AGG | - | chr3.2:60489062-60489081 | MS.gene061545:CDS | 45.0% | |
| GCATAACTGGATCAGCACTA+AGG | + | chr3.2:60488609-60488628 | None:intergenic | 45.0% | |
| GCTGCCTCAAAAAACTCTCT+TGG | + | chr3.2:60488504-60488523 | None:intergenic | 45.0% | |
| GGAAATGTCAATCCCCCAAA+TGG | - | chr3.2:60488916-60488935 | MS.gene061545:CDS | 45.0% | |
| GGATTGACATTTCCCATAGG+AGG | + | chr3.2:60488910-60488929 | None:intergenic | 45.0% | |
| GGATTTGGCCAAAACCCATT+TGG | + | chr3.2:60488934-60488953 | None:intergenic | 45.0% | |
| TCATAATCAACGACTCTGCG+AGG | - | chr3.2:60488275-60488294 | MS.gene061545:intron | 45.0% | |
| TCCTTATGATCCTCAACCAG+AGG | - | chr3.2:60488393-60488412 | MS.gene061545:intron | 45.0% | |
| TGACTGGATTTGTCCATCCA+TGG | - | chr3.2:60489056-60489075 | MS.gene061545:CDS | 45.0% | |
| TGCAAATCCTAGACCATGGA+TGG | + | chr3.2:60489072-60489091 | None:intergenic | 45.0% | |
| TTTGGCCAAAACCCATTTGG+GGG | + | chr3.2:60488931-60488950 | None:intergenic | 45.0% | |
| ! | CGTCTCCTTTAGGAGTTCAA+AGG | - | chr3.2:60488422-60488441 | MS.gene061545:intron | 45.0% |
| ! | TTTGAGGCAGCGGATTCAAA+AGG | - | chr3.2:60488513-60488532 | MS.gene061545:intron | 45.0% |
| !! | TCAATCCCCCAAATGGGTTT+TGG | - | chr3.2:60488923-60488942 | MS.gene061545:CDS | 45.0% |
| AATCAACGACTCTGCGAGGA+AGG | - | chr3.2:60488279-60488298 | MS.gene061545:intron | 50.0% | |
| AGCAGGAATGGTCAAGGTCA+AGG | - | chr3.2:60488715-60488734 | MS.gene061545:CDS | 50.0% | |
| GAGAATGGACAAGGGAGTCA+TGG | - | chr3.2:60488796-60488815 | MS.gene061545:CDS | 50.0% | |
| GCACCAACTATGGTGGCTAA+TGG | - | chr3.2:60488757-60488776 | MS.gene061545:CDS | 50.0% | |
| GGAGGGTTGAAATGTTGAGC+AGG | - | chr3.2:60488698-60488717 | MS.gene061545:CDS | 50.0% | |
| GGGGGATTGACATTTCCCAT+AGG | + | chr3.2:60488913-60488932 | None:intergenic | 50.0% | |
| !! | GAATAATGGTGGTGGGGATC+AGG | - | chr3.2:60488882-60488901 | MS.gene061545:CDS | 50.0% |
| AAAGGAGACGGCCAAACCTC+TGG | + | chr3.2:60488412-60488431 | None:intergenic | 55.0% | |
| GAGGTTTGGCCGTCTCCTTT+AGG | - | chr3.2:60488412-60488431 | MS.gene061545:intron | 55.0% | |
| GGTCGTAGCACCAACTATGG+TGG | - | chr3.2:60488750-60488769 | MS.gene061545:CDS | 55.0% | |
| GACGGCCAAACCTCTGGTTG+AGG | + | chr3.2:60488406-60488425 | None:intergenic | 60.0% | |
| GGGGATCAGGCACCTCCTAT+GGG | - | chr3.2:60488895-60488914 | MS.gene061545:CDS | 60.0% | |
| TGGGGATCAGGCACCTCCTA+TGG | - | chr3.2:60488894-60488913 | MS.gene061545:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 60488247 | 60489254 | 60488247 | ID=MS.gene061545 |
| chr3.2 | mRNA | 60488247 | 60489254 | 60488247 | ID=MS.gene061545.t1;Parent=MS.gene061545 |
| chr3.2 | exon | 60488609 | 60489254 | 60488609 | ID=MS.gene061545.t1.exon1;Parent=MS.gene061545.t1 |
| chr3.2 | CDS | 60488609 | 60489254 | 60488609 | ID=cds.MS.gene061545.t1;Parent=MS.gene061545.t1 |
| chr3.2 | exon | 60488247 | 60488275 | 60488247 | ID=MS.gene061545.t1.exon2;Parent=MS.gene061545.t1 |
| chr3.2 | CDS | 60488247 | 60488275 | 60488247 | ID=cds.MS.gene061545.t1;Parent=MS.gene061545.t1 |
| Gene Sequence |
| Protein sequence |
