Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04997.t1 | XP_024635654.1 | 93 | 242 | 14 | 1 | 1 | 239 | 1 | 242 | 4.90E-119 | 437.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04997.t1 | Q9FJK3 | 63.3 | 177 | 65 | 0 | 1 | 177 | 1 | 177 | 5.1e-56 | 219.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04997.t1 | G7J8R0 | 93.0 | 242 | 14 | 1 | 1 | 239 | 1 | 242 | 3.6e-119 | 437.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene04997.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04997 | MS.gene061542 | 0.839047 | 2.00E-57 | -1.69E-46 |
| MS.gene04997 | MS.gene061545 | 0.92067 | 9.54E-88 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04997.t1 | MTR_3g065100 | 96.281 | 242 | 6 | 1 | 1 | 239 | 1 | 242 | 2.51e-174 | 479 |
| MS.gene04997.t1 | MTR_3g466980 | 54.357 | 241 | 83 | 4 | 1 | 234 | 1 | 221 | 7.42e-83 | 246 |
| MS.gene04997.t1 | MTR_8g036130 | 57.143 | 245 | 94 | 6 | 1 | 235 | 1 | 244 | 3.54e-80 | 241 |
| MS.gene04997.t1 | MTR_4g032620 | 50.847 | 236 | 107 | 4 | 1 | 235 | 1 | 228 | 7.35e-77 | 232 |
| MS.gene04997.t1 | MTR_4g031910 | 49.794 | 243 | 97 | 6 | 1 | 235 | 1 | 226 | 3.24e-65 | 202 |
| MS.gene04997.t1 | MTR_4g032290 | 50.617 | 243 | 97 | 6 | 1 | 235 | 1 | 228 | 9.58e-60 | 188 |
| MS.gene04997.t1 | MTR_3g466830 | 51.899 | 158 | 76 | 0 | 3 | 160 | 2 | 159 | 5.52e-55 | 174 |
| MS.gene04997.t1 | MTR_4g032260 | 61.290 | 155 | 59 | 1 | 1 | 154 | 1 | 155 | 4.42e-54 | 171 |
| MS.gene04997.t1 | MTR_4g063790 | 51.220 | 164 | 79 | 1 | 1 | 163 | 1 | 164 | 1.24e-52 | 168 |
| MS.gene04997.t1 | MTR_2g035610 | 68.033 | 122 | 39 | 0 | 1 | 122 | 1 | 122 | 6.30e-52 | 164 |
| MS.gene04997.t1 | MTR_3g466890 | 49.682 | 157 | 79 | 0 | 3 | 159 | 2 | 158 | 4.54e-49 | 159 |
| MS.gene04997.t1 | MTR_3g467080 | 49.032 | 155 | 78 | 1 | 1 | 154 | 1 | 155 | 1.35e-48 | 157 |
| MS.gene04997.t1 | MTR_5g047580 | 50.000 | 156 | 77 | 1 | 1 | 156 | 1 | 155 | 1.56e-46 | 152 |
| MS.gene04997.t1 | MTR_5g075380 | 42.593 | 162 | 93 | 0 | 1 | 162 | 1 | 162 | 6.66e-46 | 150 |
| MS.gene04997.t1 | MTR_3g031100 | 41.341 | 179 | 100 | 2 | 1 | 178 | 1 | 175 | 1.68e-43 | 147 |
| MS.gene04997.t1 | MTR_2g016210 | 41.294 | 201 | 106 | 3 | 1 | 197 | 1 | 193 | 2.80e-42 | 144 |
| MS.gene04997.t1 | MTR_1g077390 | 46.497 | 157 | 83 | 1 | 1 | 157 | 1 | 156 | 5.58e-42 | 140 |
| MS.gene04997.t1 | MTR_7g011950 | 50.955 | 157 | 76 | 1 | 1 | 157 | 1 | 156 | 2.27e-41 | 139 |
| MS.gene04997.t1 | MTR_1g090697 | 42.949 | 156 | 88 | 1 | 1 | 156 | 1 | 155 | 8.37e-41 | 137 |
| MS.gene04997.t1 | MTR_1g084950 | 50.000 | 156 | 77 | 1 | 1 | 156 | 1 | 155 | 6.19e-40 | 135 |
| MS.gene04997.t1 | MTR_1g077320 | 50.318 | 157 | 77 | 1 | 1 | 157 | 1 | 156 | 8.39e-40 | 135 |
| MS.gene04997.t1 | MTR_3g031240 | 40.123 | 162 | 96 | 1 | 1 | 161 | 1 | 162 | 2.93e-39 | 134 |
| MS.gene04997.t1 | MTR_4g028720 | 48.408 | 157 | 80 | 1 | 1 | 157 | 1 | 156 | 6.95e-38 | 130 |
| MS.gene04997.t1 | MTR_1g090710 | 40.127 | 157 | 92 | 2 | 1 | 156 | 1 | 156 | 7.43e-37 | 127 |
| MS.gene04997.t1 | MTR_1g090783 | 41.558 | 154 | 89 | 1 | 3 | 156 | 2 | 154 | 1.03e-36 | 127 |
| MS.gene04997.t1 | MTR_3g466900 | 45.312 | 128 | 70 | 0 | 32 | 159 | 2 | 129 | 3.32e-36 | 125 |
| MS.gene04997.t1 | MTR_3g465410 | 46.923 | 130 | 68 | 1 | 29 | 157 | 1 | 130 | 3.83e-36 | 125 |
| MS.gene04997.t1 | MTR_2g035580 | 43.506 | 154 | 87 | 0 | 1 | 154 | 1 | 154 | 1.04e-35 | 124 |
| MS.gene04997.t1 | MTR_1g077300 | 48.408 | 157 | 78 | 2 | 1 | 157 | 1 | 154 | 1.27e-34 | 121 |
| MS.gene04997.t1 | MTR_3g466930 | 45.312 | 128 | 70 | 0 | 32 | 159 | 2 | 129 | 1.94e-34 | 120 |
| MS.gene04997.t1 | MTR_5g047560 | 41.026 | 156 | 75 | 2 | 1 | 156 | 1 | 139 | 1.16e-30 | 110 |
| MS.gene04997.t1 | MTR_7g055800 | 47.899 | 119 | 34 | 2 | 1 | 119 | 1 | 91 | 1.59e-28 | 103 |
| MS.gene04997.t1 | MTR_4g028800 | 69.444 | 72 | 20 | 1 | 1 | 72 | 1 | 70 | 3.49e-28 | 102 |
| MS.gene04997.t1 | MTR_7g055790 | 51.351 | 111 | 36 | 1 | 1 | 111 | 59 | 151 | 8.62e-26 | 99.0 |
| MS.gene04997.t1 | MTR_4g084780 | 94.000 | 50 | 3 | 0 | 74 | 123 | 1 | 50 | 2.27e-25 | 97.8 |
| MS.gene04997.t1 | MTR_6g018920 | 29.630 | 243 | 133 | 9 | 1 | 233 | 1 | 215 | 2.73e-24 | 99.4 |
| MS.gene04997.t1 | MTR_4g019670 | 38.462 | 117 | 72 | 0 | 3 | 119 | 6 | 122 | 1.09e-23 | 99.4 |
| MS.gene04997.t1 | MTR_7g106510 | 38.525 | 122 | 72 | 1 | 1 | 119 | 1 | 122 | 3.85e-23 | 97.8 |
| MS.gene04997.t1 | MTR_7g055940 | 45.283 | 106 | 30 | 2 | 1 | 106 | 1 | 78 | 4.02e-22 | 87.0 |
| MS.gene04997.t1 | MTR_1g114730 | 27.049 | 244 | 140 | 8 | 1 | 234 | 1 | 216 | 3.78e-20 | 87.8 |
| MS.gene04997.t1 | MTR_3g093900 | 27.564 | 156 | 113 | 0 | 3 | 158 | 6 | 161 | 4.93e-20 | 89.0 |
| MS.gene04997.t1 | MTR_6g005450 | 26.749 | 243 | 142 | 9 | 1 | 234 | 1 | 216 | 1.16e-19 | 86.7 |
| MS.gene04997.t1 | MTR_2g035590 | 50.562 | 89 | 43 | 1 | 74 | 161 | 1 | 89 | 2.31e-19 | 80.5 |
| MS.gene04997.t1 | MTR_6g005440 | 26.087 | 184 | 120 | 5 | 1 | 178 | 1 | 174 | 1.13e-15 | 75.1 |
| MS.gene04997.t1 | MTR_2g049610 | 24.686 | 239 | 165 | 7 | 1 | 237 | 1 | 226 | 2.10e-12 | 65.1 |
| MS.gene04997.t1 | MTR_4g045977 | 24.623 | 199 | 132 | 5 | 1 | 189 | 1 | 191 | 3.63e-12 | 65.5 |
| MS.gene04997.t1 | MTR_4g107170 | 26.627 | 169 | 113 | 4 | 1 | 166 | 1 | 161 | 1.40e-11 | 62.8 |
| MS.gene04997.t1 | MTR_2g085250 | 27.615 | 239 | 147 | 10 | 3 | 226 | 10 | 237 | 7.89e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04997.t1 | AT5G48670 | 56.164 | 219 | 83 | 3 | 1 | 206 | 1 | 219 | 3.25e-70 | 218 |
| MS.gene04997.t1 | AT1G65300 | 43.678 | 174 | 98 | 0 | 3 | 176 | 2 | 175 | 1.16e-50 | 166 |
| MS.gene04997.t1 | AT1G65330 | 47.222 | 180 | 93 | 1 | 3 | 180 | 2 | 181 | 4.00e-50 | 165 |
| MS.gene04997.t1 | AT3G05860 | 44.505 | 182 | 96 | 2 | 1 | 177 | 1 | 182 | 4.09e-48 | 159 |
| MS.gene04997.t1 | AT3G05860 | 51.007 | 149 | 73 | 0 | 1 | 149 | 1 | 149 | 4.93e-48 | 157 |
| MS.gene04997.t1 | AT5G26630 | 47.120 | 191 | 99 | 2 | 1 | 191 | 1 | 189 | 8.54e-48 | 157 |
| MS.gene04997.t1 | AT3G05860 | 41.709 | 199 | 111 | 2 | 1 | 194 | 1 | 199 | 1.21e-47 | 158 |
| MS.gene04997.t1 | AT5G26650 | 44.654 | 159 | 88 | 0 | 4 | 162 | 2 | 160 | 1.44e-43 | 150 |
| MS.gene04997.t1 | AT5G27960 | 44.025 | 159 | 89 | 0 | 4 | 162 | 2 | 160 | 1.36e-42 | 147 |
| MS.gene04997.t1 | AT1G31630 | 42.405 | 158 | 90 | 1 | 3 | 160 | 2 | 158 | 1.19e-41 | 145 |
| MS.gene04997.t1 | AT5G27810 | 66.667 | 93 | 31 | 0 | 29 | 121 | 1 | 93 | 5.28e-40 | 134 |
| MS.gene04997.t1 | AT1G31640 | 41.875 | 160 | 92 | 1 | 3 | 162 | 2 | 160 | 7.05e-39 | 140 |
| MS.gene04997.t1 | AT2G28700 | 35.135 | 185 | 111 | 4 | 1 | 179 | 1 | 182 | 6.06e-34 | 124 |
| MS.gene04997.t1 | AT5G26580 | 39.375 | 160 | 83 | 1 | 1 | 160 | 1 | 146 | 5.07e-32 | 120 |
| MS.gene04997.t1 | AT1G22590 | 35.714 | 154 | 96 | 1 | 1 | 154 | 1 | 151 | 2.43e-26 | 100 |
| MS.gene04997.t1 | AT2G40210 | 43.902 | 123 | 69 | 0 | 1 | 123 | 1 | 123 | 5.86e-24 | 99.0 |
| MS.gene04997.t1 | AT5G06500 | 37.815 | 119 | 74 | 0 | 1 | 119 | 1 | 119 | 1.53e-21 | 90.1 |
| MS.gene04997.t1 | AT5G55690 | 28.846 | 208 | 112 | 4 | 1 | 187 | 1 | 193 | 5.36e-18 | 81.3 |
| MS.gene04997.t1 | AT5G55690 | 28.846 | 208 | 112 | 4 | 1 | 187 | 1 | 193 | 5.36e-18 | 81.3 |
| MS.gene04997.t1 | AT5G58890 | 30.625 | 160 | 96 | 3 | 1 | 154 | 1 | 151 | 1.31e-13 | 69.3 |
| MS.gene04997.t1 | AT1G77950 | 37.895 | 95 | 58 | 1 | 1 | 95 | 1 | 94 | 4.89e-11 | 61.2 |
| MS.gene04997.t1 | AT1G77950 | 37.895 | 95 | 58 | 1 | 1 | 95 | 1 | 94 | 4.89e-11 | 61.2 |
| MS.gene04997.t1 | AT1G77950 | 37.895 | 95 | 58 | 1 | 1 | 95 | 1 | 94 | 4.89e-11 | 61.2 |
| MS.gene04997.t1 | AT1G77950 | 37.895 | 95 | 58 | 1 | 1 | 95 | 1 | 94 | 4.89e-11 | 61.2 |
| MS.gene04997.t1 | AT1G59930 | 34.211 | 114 | 64 | 3 | 84 | 192 | 1 | 108 | 5.53e-11 | 58.9 |
| MS.gene04997.t1 | AT5G35120 | 32.967 | 91 | 61 | 0 | 84 | 174 | 1 | 91 | 6.46e-11 | 58.2 |
Find 55 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATTATCCTTTCTTTGTT+TGG | 0.241148 | 3.3:+58680911 | None:intergenic |
| TGTCCATTCTCTTCAATCTT+AGG | 0.274749 | 3.3:+58680678 | None:intergenic |
| GATTTGGCCAAAACCCATTT+GGG | 0.290435 | 3.3:+58680532 | None:intergenic |
| TTTATGAACTTGATGAATAA+TGG | 0.322309 | 3.3:-58680594 | MS.gene04997:CDS |
| ATGCTTATATTGTGCATAAC+TGG | 0.326699 | 3.3:+58680843 | None:intergenic |
| GAAGAAAGGTCTAATGAAAA+AGG | 0.328619 | 3.3:-58681144 | MS.gene04997:CDS |
| CATGGTTGATTTGAATGATA+TGG | 0.333296 | 3.3:-58680823 | MS.gene04997:CDS |
| GAGTCATGGTCAACATGTTT+TGG | 0.338044 | 3.3:-58680652 | MS.gene04997:CDS |
| GGATTTGGCCAAAACCCATT+TGG | 0.342692 | 3.3:+58680531 | None:intergenic |
| GAGGTTTGGCCGTCTCCTTT+AGG | 0.389676 | 3.3:-58681050 | MS.gene04997:CDS |
| TGGGGATCAGGCACCTCCTA+TGG | 0.395072 | 3.3:-58680568 | MS.gene04997:CDS |
| GAATAATGGTGGTGGGGATC+AGG | 0.411629 | 3.3:-58680580 | MS.gene04997:CDS |
| AATGGTCGTAGCACCAACTA+TGG | 0.416139 | 3.3:-58680715 | MS.gene04997:CDS |
| ACCTCTGGTTGAGGATCATA+AGG | 0.423494 | 3.3:+58681068 | None:intergenic |
| ATGATCCTCAACCAGAGGTT+TGG | 0.426927 | 3.3:-58681064 | MS.gene04997:CDS |
| AGTATTTGAAAGATATCAAT+AGG | 0.431729 | 3.3:-58680785 | MS.gene04997:CDS |
| AAAGGAGACGGCCAAACCTC+TGG | 0.476094 | 3.3:+58681053 | None:intergenic |
| GTCTCCTTTAGGAGTTCAAA+GGG | 0.477655 | 3.3:-58681039 | MS.gene04997:CDS |
| CGTCTCCTTTAGGAGTTCAA+AGG | 0.479690 | 3.3:-58681040 | MS.gene04997:CDS |
| GGAAGGCAACATTCAAGAAA+AGG | 0.489208 | 3.3:-58681166 | MS.gene04997:CDS |
| TCAATTGACCAAACAAAGAA+AGG | 0.490968 | 3.3:-58680919 | MS.gene04997:CDS |
| GCACCAACTATGGTGGCTAA+TGG | 0.492096 | 3.3:-58680705 | MS.gene04997:CDS |
| TTTGAGGCAGCGGATTCAAA+AGG | 0.492900 | 3.3:-58680949 | MS.gene04997:CDS |
| GGAGGGTTGAAATGTTGAGC+AGG | 0.493102 | 3.3:-58680764 | MS.gene04997:CDS |
| CTACCTAAGATTGAAGAGAA+TGG | 0.512642 | 3.3:-58680681 | MS.gene04997:CDS |
| AGGTCAAGGTCAAACTCAAA+TGG | 0.513312 | 3.3:-58680733 | MS.gene04997:CDS |
| AGCACCCTTTGAACTCCTAA+AGG | 0.514637 | 3.3:+58681035 | None:intergenic |
| GTTGAAATGTTGAGCAGGAA+TGG | 0.522645 | 3.3:-58680759 | MS.gene04997:CDS |
| GGGGATCAGGCACCTCCTAT+GGG | 0.527561 | 3.3:-58680567 | MS.gene04997:CDS |
| AATCAACGACTCTGCGAGGA+AGG | 0.536639 | 3.3:-58681183 | MS.gene04997:CDS |
| AGTCCATTAGCCACCATAGT+TGG | 0.539716 | 3.3:+58680702 | None:intergenic |
| TTTGAAAGATATCAATAGGA+GGG | 0.549226 | 3.3:-58680781 | MS.gene04997:CDS |
| AACTTGATGAATAATGGTGG+TGG | 0.552012 | 3.3:-58680588 | MS.gene04997:CDS |
| AGCAGGAATGGTCAAGGTCA+AGG | 0.553703 | 3.3:-58680747 | MS.gene04997:CDS |
| GAGAATGGACAAGGGAGTCA+TGG | 0.556512 | 3.3:-58680666 | MS.gene04997:CDS |
| ACATTCAAGAAAAGGAAGAA+AGG | 0.560908 | 3.3:-58681158 | MS.gene04997:CDS |
| GACGGCCAAACCTCTGGTTG+AGG | 0.565198 | 3.3:+58681059 | None:intergenic |
| GGATTGACATTTCCCATAGG+AGG | 0.571905 | 3.3:+58680555 | None:intergenic |
| ATTTGGCCAAAACCCATTTG+GGG | 0.587386 | 3.3:+58680533 | None:intergenic |
| TTTGGCCAAAACCCATTTGG+GGG | 0.595235 | 3.3:+58680534 | None:intergenic |
| ATTTGAAAGATATCAATAGG+AGG | 0.602830 | 3.3:-58680782 | MS.gene04997:CDS |
| TCCTTATGATCCTCAACCAG+AGG | 0.603338 | 3.3:-58681069 | MS.gene04997:CDS |
| GCATAACTGGATCAGCACTA+AGG | 0.605501 | 3.3:+58680856 | None:intergenic |
| AAGATTGAAGAGAATGGACA+AGG | 0.608283 | 3.3:-58680675 | MS.gene04997:CDS |
| ACTTGATGAATAATGGTGGT+GGG | 0.616834 | 3.3:-58680587 | MS.gene04997:CDS |
| ATGAACTTGATGAATAATGG+TGG | 0.624781 | 3.3:-58680591 | MS.gene04997:CDS |
| AGTGAACTCAGTACTCTATG+TGG | 0.630043 | 3.3:-58681119 | MS.gene04997:CDS |
| CTTGATGAATAATGGTGGTG+GGG | 0.636670 | 3.3:-58680586 | MS.gene04997:CDS |
| CTTTGAACTCCTAAAGGAGA+CGG | 0.641014 | 3.3:+58681041 | None:intergenic |
| AGTTATGCACAATATAAGCA+TGG | 0.643634 | 3.3:-58680841 | MS.gene04997:CDS |
| TTGATTTGAATGATATGGCA+TGG | 0.644556 | 3.3:-58680818 | MS.gene04997:CDS |
| ATGTTGAGCAGGAATGGTCA+AGG | 0.649347 | 3.3:-58680753 | MS.gene04997:CDS |
| GGTCGTAGCACCAACTATGG+TGG | 0.652064 | 3.3:-58680712 | MS.gene04997:CDS |
| TCATAATCAACGACTCTGCG+AGG | 0.671801 | 3.3:-58681187 | MS.gene04997:CDS |
| AGATTGAAGAGAATGGACAA+GGG | 0.691703 | 3.3:-58680674 | MS.gene04997:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTATTTGAAAGATATCAAT+AGG | - | chr3.3:58680948-58680967 | MS.gene04997:CDS | 20.0% |
| !! | TTTATGAACTTGATGAATAA+TGG | - | chr3.3:58681139-58681158 | MS.gene04997:CDS | 20.0% |
| ! | ATTTGAAAGATATCAATAGG+AGG | - | chr3.3:58680951-58680970 | MS.gene04997:CDS | 25.0% |
| ! | TCTATTATCCTTTCTTTGTT+TGG | + | chr3.3:58680825-58680844 | None:intergenic | 25.0% |
| ! | TTTGAAAGATATCAATAGGA+GGG | - | chr3.3:58680952-58680971 | MS.gene04997:CDS | 25.0% |
| ACATTCAAGAAAAGGAAGAA+AGG | - | chr3.3:58680575-58680594 | MS.gene04997:CDS | 30.0% | |
| AGTTATGCACAATATAAGCA+TGG | - | chr3.3:58680892-58680911 | MS.gene04997:CDS | 30.0% | |
| ATGAACTTGATGAATAATGG+TGG | - | chr3.3:58681142-58681161 | MS.gene04997:CDS | 30.0% | |
| ATGCTTATATTGTGCATAAC+TGG | + | chr3.3:58680893-58680912 | None:intergenic | 30.0% | |
| ATTGGAACAAAGCAAAAAGA+TGG | - | chr3.3:58680745-58680764 | MS.gene04997:CDS | 30.0% | |
| GAAGAAAGGTCTAATGAAAA+AGG | - | chr3.3:58680589-58680608 | MS.gene04997:CDS | 30.0% | |
| TCAATTGACCAAACAAAGAA+AGG | - | chr3.3:58680814-58680833 | MS.gene04997:CDS | 30.0% | |
| ! | TTGATTTGAATGATATGGCA+TGG | - | chr3.3:58680915-58680934 | MS.gene04997:CDS | 30.0% |
| !! | CATGGTTGATTTGAATGATA+TGG | - | chr3.3:58680910-58680929 | MS.gene04997:CDS | 30.0% |
| !! | TTTTTGCTTTGTTCCAATTC+AGG | + | chr3.3:58680743-58680762 | None:intergenic | 30.0% |
| AACTTGATGAATAATGGTGG+TGG | - | chr3.3:58681145-58681164 | MS.gene04997:CDS | 35.0% | |
| AAGATTGAAGAGAATGGACA+AGG | - | chr3.3:58681058-58681077 | MS.gene04997:CDS | 35.0% | |
| ACTTGATGAATAATGGTGGT+GGG | - | chr3.3:58681146-58681165 | MS.gene04997:CDS | 35.0% | |
| AGATTGAAGAGAATGGACAA+GGG | - | chr3.3:58681059-58681078 | MS.gene04997:CDS | 35.0% | |
| CTACCTAAGATTGAAGAGAA+TGG | - | chr3.3:58681052-58681071 | MS.gene04997:CDS | 35.0% | |
| TGTCCATTCTCTTCAATCTT+AGG | + | chr3.3:58681058-58681077 | None:intergenic | 35.0% | |
| ! | GTTCCAATTCAGGCATTTTT+CGG | + | chr3.3:58680733-58680752 | None:intergenic | 35.0% |
| !! | ACATGTTTTGGACATGAACA+TGG | - | chr3.3:58681093-58681112 | MS.gene04997:CDS | 35.0% |
| !!! | TGAACCAAGAGAGTTTTTTG+AGG | - | chr3.3:58680768-58680787 | MS.gene04997:CDS | 35.0% |
| AGGTCAAGGTCAAACTCAAA+TGG | - | chr3.3:58681000-58681019 | MS.gene04997:CDS | 40.0% | |
| AGTGAACTCAGTACTCTATG+TGG | - | chr3.3:58680614-58680633 | MS.gene04997:CDS | 40.0% | |
| ATTTGGCCAAAACCCATTTG+GGG | + | chr3.3:58681203-58681222 | None:intergenic | 40.0% | |
| CTTTGAACTCCTAAAGGAGA+CGG | + | chr3.3:58680695-58680714 | None:intergenic | 40.0% | |
| GAAATGTCAATCCCCCAAAT+GGG | - | chr3.3:58681188-58681207 | MS.gene04997:CDS | 40.0% | |
| GATTTGGCCAAAACCCATTT+GGG | + | chr3.3:58681204-58681223 | None:intergenic | 40.0% | |
| GGAAGGCAACATTCAAGAAA+AGG | - | chr3.3:58680567-58680586 | MS.gene04997:CDS | 40.0% | |
| GTTCCGAAAAATGCCTGAAT+TGG | - | chr3.3:58680727-58680746 | MS.gene04997:CDS | 40.0% | |
| GTTGAAATGTTGAGCAGGAA+TGG | - | chr3.3:58680974-58680993 | MS.gene04997:CDS | 40.0% | |
| ! | CTTGATGAATAATGGTGGTG+GGG | - | chr3.3:58681147-58681166 | MS.gene04997:CDS | 40.0% |
| ! | GAGTCATGGTCAACATGTTT+TGG | - | chr3.3:58681081-58681100 | MS.gene04997:CDS | 40.0% |
| ! | GTCTCCTTTAGGAGTTCAAA+GGG | - | chr3.3:58680694-58680713 | MS.gene04997:CDS | 40.0% |
| !!! | AAGAGAGTTTTTTGAGGCAG+CGG | - | chr3.3:58680774-58680793 | MS.gene04997:CDS | 40.0% |
| AATGGTCGTAGCACCAACTA+TGG | - | chr3.3:58681018-58681037 | MS.gene04997:CDS | 45.0% | |
| ACCTCTGGTTGAGGATCATA+AGG | + | chr3.3:58680668-58680687 | None:intergenic | 45.0% | |
| AGCACCCTTTGAACTCCTAA+AGG | + | chr3.3:58680701-58680720 | None:intergenic | 45.0% | |
| AGTCCATTAGCCACCATAGT+TGG | + | chr3.3:58681034-58681053 | None:intergenic | 45.0% | |
| ATGATCCTCAACCAGAGGTT+TGG | - | chr3.3:58680669-58680688 | MS.gene04997:CDS | 45.0% | |
| ATGTTGAGCAGGAATGGTCA+AGG | - | chr3.3:58680980-58680999 | MS.gene04997:CDS | 45.0% | |
| GCATAACTGGATCAGCACTA+AGG | + | chr3.3:58680880-58680899 | None:intergenic | 45.0% | |
| GCTGCCTCAAAAAACTCTCT+TGG | + | chr3.3:58680775-58680794 | None:intergenic | 45.0% | |
| GGAAATGTCAATCCCCCAAA+TGG | - | chr3.3:58681187-58681206 | MS.gene04997:CDS | 45.0% | |
| GGATTGACATTTCCCATAGG+AGG | + | chr3.3:58681181-58681200 | None:intergenic | 45.0% | |
| GGATTTGGCCAAAACCCATT+TGG | + | chr3.3:58681205-58681224 | None:intergenic | 45.0% | |
| TCATAATCAACGACTCTGCG+AGG | - | chr3.3:58680546-58680565 | MS.gene04997:CDS | 45.0% | |
| TCCTTATGATCCTCAACCAG+AGG | - | chr3.3:58680664-58680683 | MS.gene04997:CDS | 45.0% | |
| TTTGGCCAAAACCCATTTGG+GGG | + | chr3.3:58681202-58681221 | None:intergenic | 45.0% | |
| ! | CGTCTCCTTTAGGAGTTCAA+AGG | - | chr3.3:58680693-58680712 | MS.gene04997:CDS | 45.0% |
| ! | TTTGAGGCAGCGGATTCAAA+AGG | - | chr3.3:58680784-58680803 | MS.gene04997:CDS | 45.0% |
| !! | TCAATCCCCCAAATGGGTTT+TGG | - | chr3.3:58681194-58681213 | MS.gene04997:CDS | 45.0% |
| AATCAACGACTCTGCGAGGA+AGG | - | chr3.3:58680550-58680569 | MS.gene04997:CDS | 50.0% | |
| AGCAGGAATGGTCAAGGTCA+AGG | - | chr3.3:58680986-58681005 | MS.gene04997:CDS | 50.0% | |
| GAGAATGGACAAGGGAGTCA+TGG | - | chr3.3:58681067-58681086 | MS.gene04997:CDS | 50.0% | |
| GCACCAACTATGGTGGCTAA+TGG | - | chr3.3:58681028-58681047 | MS.gene04997:CDS | 50.0% | |
| GGAGGGTTGAAATGTTGAGC+AGG | - | chr3.3:58680969-58680988 | MS.gene04997:CDS | 50.0% | |
| GGGGGATTGACATTTCCCAT+AGG | + | chr3.3:58681184-58681203 | None:intergenic | 50.0% | |
| !! | GAATAATGGTGGTGGGGATC+AGG | - | chr3.3:58681153-58681172 | MS.gene04997:CDS | 50.0% |
| AAAGGAGACGGCCAAACCTC+TGG | + | chr3.3:58680683-58680702 | None:intergenic | 55.0% | |
| GAGGTTTGGCCGTCTCCTTT+AGG | - | chr3.3:58680683-58680702 | MS.gene04997:CDS | 55.0% | |
| GGTCGTAGCACCAACTATGG+TGG | - | chr3.3:58681021-58681040 | MS.gene04997:CDS | 55.0% | |
| GACGGCCAAACCTCTGGTTG+AGG | + | chr3.3:58680677-58680696 | None:intergenic | 60.0% | |
| GGGGATCAGGCACCTCCTAT+GGG | - | chr3.3:58681166-58681185 | MS.gene04997:CDS | 60.0% | |
| TGGGGATCAGGCACCTCCTA+TGG | - | chr3.3:58681165-58681184 | MS.gene04997:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 58680518 | 58681237 | 58680518 | ID=MS.gene04997 |
| chr3.3 | mRNA | 58680518 | 58681237 | 58680518 | ID=MS.gene04997.t1;Parent=MS.gene04997 |
| chr3.3 | exon | 58680518 | 58681237 | 58680518 | ID=MS.gene04997.t1.exon1;Parent=MS.gene04997.t1 |
| chr3.3 | CDS | 58680518 | 58681237 | 58680518 | ID=cds.MS.gene04997.t1;Parent=MS.gene04997.t1 |
| Gene Sequence |
| Protein sequence |
