Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061573.t1 | AES70883.2 | 94.3 | 283 | 15 | 1 | 5 | 286 | 6 | 288 | 3.50E-141 | 511.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061573.t1 | F4KGY6 | 47.0 | 281 | 111 | 4 | 15 | 284 | 4 | 257 | 4.5e-52 | 206.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061573.t1 | G7J7Y9 | 94.3 | 283 | 15 | 1 | 5 | 286 | 6 | 288 | 2.6e-141 | 511.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene061573.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053626 | MS.gene061573 | 0.810415 | 1.17E-50 | -1.69E-46 |
| MS.gene059367 | MS.gene061573 | 0.804248 | 2.37E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061573.t1 | MTR_3g064500 | 93.031 | 287 | 19 | 1 | 1 | 286 | 2 | 288 | 0.0 | 517 |
| MS.gene061573.t1 | MTR_5g076960 | 60.000 | 285 | 104 | 5 | 18 | 293 | 4 | 287 | 7.17e-97 | 292 |
| MS.gene061573.t1 | MTR_6g477860 | 45.583 | 283 | 135 | 8 | 1 | 269 | 1 | 278 | 6.57e-51 | 175 |
| MS.gene061573.t1 | MTR_5g076960 | 52.973 | 185 | 78 | 4 | 117 | 293 | 3 | 186 | 4.88e-38 | 137 |
| MS.gene061573.t1 | MTR_1g067000 | 57.143 | 98 | 34 | 1 | 45 | 142 | 36 | 125 | 7.06e-35 | 129 |
| MS.gene061573.t1 | MTR_8g028655 | 40.984 | 183 | 87 | 3 | 16 | 196 | 24 | 187 | 1.53e-32 | 123 |
| MS.gene061573.t1 | MTR_7g118330 | 66.019 | 103 | 33 | 1 | 37 | 137 | 7 | 109 | 1.22e-31 | 125 |
| MS.gene061573.t1 | MTR_0123s0070 | 53.922 | 102 | 39 | 1 | 36 | 137 | 30 | 123 | 1.46e-31 | 119 |
| MS.gene061573.t1 | MTR_0123s0070 | 53.922 | 102 | 39 | 1 | 36 | 137 | 30 | 123 | 2.13e-31 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061573.t1 | AT5G17300 | 50.562 | 267 | 95 | 5 | 15 | 271 | 4 | 243 | 2.00e-58 | 192 |
| MS.gene061573.t1 | AT5G37260 | 46.614 | 251 | 59 | 6 | 33 | 272 | 12 | 198 | 1.96e-52 | 174 |
| MS.gene061573.t1 | AT1G18330 | 52.518 | 139 | 55 | 1 | 43 | 181 | 37 | 164 | 2.84e-34 | 128 |
| MS.gene061573.t1 | AT3G10113 | 52.518 | 139 | 55 | 1 | 43 | 181 | 52 | 179 | 3.44e-34 | 127 |
| MS.gene061573.t1 | AT1G18330 | 52.518 | 139 | 55 | 1 | 43 | 181 | 63 | 190 | 5.94e-34 | 128 |
| MS.gene061573.t1 | AT3G09600 | 55.446 | 101 | 37 | 1 | 37 | 137 | 24 | 116 | 2.28e-33 | 124 |
| MS.gene061573.t1 | AT3G09600 | 55.446 | 101 | 37 | 1 | 37 | 137 | 24 | 116 | 2.28e-33 | 124 |
| MS.gene061573.t1 | AT3G09600 | 55.446 | 101 | 37 | 1 | 37 | 137 | 24 | 116 | 2.32e-33 | 124 |
| MS.gene061573.t1 | AT3G09600 | 55.446 | 101 | 37 | 1 | 37 | 137 | 24 | 116 | 2.32e-33 | 124 |
| MS.gene061573.t1 | AT3G09600 | 55.446 | 101 | 37 | 1 | 37 | 137 | 24 | 116 | 2.45e-33 | 124 |
| MS.gene061573.t1 | AT1G01520 | 42.045 | 176 | 82 | 5 | 20 | 195 | 26 | 181 | 9.17e-33 | 122 |
| MS.gene061573.t1 | AT1G01520 | 42.045 | 176 | 82 | 5 | 20 | 195 | 26 | 181 | 9.17e-33 | 122 |
| MS.gene061573.t1 | AT1G01520 | 42.045 | 176 | 82 | 5 | 20 | 195 | 26 | 181 | 1.20e-32 | 122 |
| MS.gene061573.t1 | AT1G01520 | 42.045 | 176 | 82 | 5 | 20 | 195 | 26 | 181 | 1.20e-32 | 122 |
| MS.gene061573.t1 | AT4G01280 | 53.913 | 115 | 43 | 2 | 23 | 137 | 28 | 132 | 1.00e-31 | 120 |
| MS.gene061573.t1 | AT4G01280 | 53.913 | 115 | 43 | 2 | 23 | 137 | 28 | 132 | 1.11e-31 | 120 |
| MS.gene061573.t1 | AT5G02840 | 56.989 | 93 | 32 | 1 | 45 | 137 | 37 | 121 | 2.32e-31 | 118 |
| MS.gene061573.t1 | AT5G02840 | 56.989 | 93 | 32 | 1 | 45 | 137 | 37 | 121 | 2.35e-31 | 119 |
| MS.gene061573.t1 | AT5G02840 | 56.989 | 93 | 32 | 1 | 45 | 137 | 37 | 121 | 2.35e-31 | 119 |
| MS.gene061573.t1 | AT5G02840 | 56.989 | 93 | 32 | 1 | 45 | 137 | 37 | 121 | 2.52e-31 | 119 |
| MS.gene061573.t1 | AT5G02840 | 56.989 | 93 | 32 | 1 | 45 | 137 | 37 | 121 | 3.83e-31 | 118 |
| MS.gene061573.t1 | AT5G52660 | 54.455 | 101 | 38 | 1 | 37 | 137 | 53 | 145 | 3.86e-31 | 119 |
| MS.gene061573.t1 | AT5G52660 | 54.455 | 101 | 38 | 1 | 37 | 137 | 53 | 145 | 4.06e-31 | 119 |
| MS.gene061573.t1 | AT1G01060 | 57.937 | 126 | 50 | 2 | 45 | 167 | 13 | 138 | 1.25e-30 | 122 |
| MS.gene061573.t1 | AT1G01060 | 57.937 | 126 | 50 | 2 | 45 | 167 | 13 | 138 | 1.27e-30 | 122 |
| MS.gene061573.t1 | AT1G01060 | 57.937 | 126 | 50 | 2 | 45 | 167 | 13 | 138 | 1.27e-30 | 122 |
| MS.gene061573.t1 | AT1G01060 | 57.937 | 126 | 50 | 2 | 45 | 167 | 13 | 138 | 1.27e-30 | 122 |
| MS.gene061573.t1 | AT1G01060 | 57.937 | 126 | 50 | 2 | 45 | 167 | 13 | 138 | 1.27e-30 | 122 |
| MS.gene061573.t1 | AT1G01060 | 57.937 | 126 | 50 | 2 | 45 | 167 | 13 | 138 | 1.27e-30 | 122 |
| MS.gene061573.t1 | AT2G46830 | 46.465 | 198 | 86 | 7 | 37 | 221 | 5 | 195 | 1.40e-30 | 121 |
| MS.gene061573.t1 | AT5G17300 | 46.073 | 191 | 76 | 4 | 81 | 271 | 5 | 168 | 1.46e-23 | 98.6 |
| MS.gene061573.t1 | AT3G09600 | 51.562 | 64 | 23 | 1 | 74 | 137 | 5 | 60 | 2.46e-16 | 77.4 |
| MS.gene061573.t1 | AT3G09600 | 51.562 | 64 | 23 | 1 | 74 | 137 | 5 | 60 | 2.46e-16 | 77.4 |
| MS.gene061573.t1 | AT3G09600 | 51.562 | 64 | 23 | 1 | 74 | 137 | 5 | 60 | 2.70e-16 | 77.0 |
| MS.gene061573.t1 | AT3G09600 | 51.562 | 64 | 23 | 1 | 74 | 137 | 5 | 60 | 2.70e-16 | 77.0 |
Find 58 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCCCGGCCATACAGCTTTA+AGG | 0.174526 | 3.2:-60086566 | None:intergenic |
| CGCGAATGATTATGCTCTTA+AGG | 0.273107 | 3.2:+60086360 | MS.gene061573:CDS |
| CTCTGTTTCGATATAGTATA+TGG | 0.282091 | 3.2:-60086502 | None:intergenic |
| AGAAATTTCAATCCCGAAAA+AGG | 0.302937 | 3.2:+60087091 | MS.gene061573:CDS |
| GGAGGAAAATTGGAACTTCT+TGG | 0.327774 | 3.2:+60087634 | MS.gene061573:CDS |
| TAGAAAGGGAGGAGGAAAAT+TGG | 0.340113 | 3.2:+60087624 | MS.gene061573:CDS |
| AGGAATTTCAATTGATTCCT+TGG | 0.346980 | 3.2:-60087000 | None:intergenic |
| AAGTGTAGATAAAACTGATT+TGG | 0.347735 | 3.2:-60087168 | None:intergenic |
| GCCTCAATTGTTGGAAAAGA+TGG | 0.348970 | 3.2:-60087575 | None:intergenic |
| TCTTACTCTTAATTGAGATA+TGG | 0.349705 | 3.2:-60087683 | None:intergenic |
| TCTGAGCATGACTTCGAATC+TGG | 0.349813 | 3.2:-60086749 | None:intergenic |
| ATAAAACTGATTTGGGAGAT+TGG | 0.361687 | 3.2:-60087160 | None:intergenic |
| TCTAACATGTATGTCATGAT+TGG | 0.376918 | 3.2:-60087605 | None:intergenic |
| CTGAGTTGAATATGAGTAAC+AGG | 0.381118 | 3.2:-60086322 | None:intergenic |
| TCAACTAGCTTGCGAGGATA+AGG | 0.387638 | 3.2:-60087053 | None:intergenic |
| TCATGATGAGAAACCTCTTC+TGG | 0.400783 | 3.2:+60087340 | MS.gene061573:CDS |
| ATCGGATGAACCAAGGCTTT+CGG | 0.424992 | 3.2:-60087195 | None:intergenic |
| CGGGCCTGGCGACGCATTGA+AGG | 0.426529 | 3.2:+60086583 | MS.gene061573:CDS |
| GGGTGCATAGGCTTACGTTT+TGG | 0.427838 | 3.2:-60087032 | None:intergenic |
| AGTGTAGATAAAACTGATTT+GGG | 0.427868 | 3.2:-60087167 | None:intergenic |
| CTTGAAGCCTTAAAGCTGTA+TGG | 0.441266 | 3.2:+60086559 | MS.gene061573:CDS |
| TCCGTTTGGTGTATCTGAAT+CGG | 0.446379 | 3.2:-60087213 | None:intergenic |
| GGTTTGCATGCCTCAATTGT+TGG | 0.453490 | 3.2:-60087584 | None:intergenic |
| CAGGTCTGAAAACACTTGCT+TGG | 0.457820 | 3.2:-60087265 | None:intergenic |
| CAACTAGCTTGCGAGGATAA+GGG | 0.462388 | 3.2:-60087052 | None:intergenic |
| TTCAAAATGTAGGATCAAGA+TGG | 0.466323 | 3.2:+60086247 | MS.gene061573:intron |
| TAAAGCTGTATGGCCGGGCC+TGG | 0.467187 | 3.2:+60086569 | MS.gene061573:CDS |
| CATACAGCTTTAAGGCTTCA+AGG | 0.472400 | 3.2:-60086558 | None:intergenic |
| TGGACACAACTAATCGATAT+CGG | 0.474217 | 3.2:-60087245 | None:intergenic |
| ATCGGAGATAAACTTCCGTT+TGG | 0.476291 | 3.2:-60087227 | None:intergenic |
| CCAGCTACATTTCCTACTGC+AGG | 0.478856 | 3.2:-60086292 | None:intergenic |
| CTTCAATGCGTCGCCAGGCC+CGG | 0.484298 | 3.2:-60086582 | None:intergenic |
| TCATGACATACATGTTAGAA+AGG | 0.487347 | 3.2:+60087609 | MS.gene061573:CDS |
| CATACCTTCAATGCGTCGCC+AGG | 0.491595 | 3.2:-60086587 | None:intergenic |
| AAGCCTTAAAGCTGTATGGC+CGG | 0.499730 | 3.2:+60086563 | MS.gene061573:CDS |
| AGGAAGTTAGTTACCAGAAG+AGG | 0.529786 | 3.2:-60087353 | None:intergenic |
| ACACTTGGTTCCGAAAGCCT+TGG | 0.534605 | 3.2:+60087185 | MS.gene061573:CDS |
| AGCCTAGCTTCTTCCTCTGA+TGG | 0.534831 | 3.2:-60087302 | None:intergenic |
| TATCGAAACAGAGAGAAAGA+TGG | 0.552512 | 3.2:+60086512 | MS.gene061573:CDS |
| TCCTACTGCAGGGCTAACAC+TGG | 0.552965 | 3.2:-60086281 | None:intergenic |
| AGCCTTAAAGCTGTATGGCC+GGG | 0.555613 | 3.2:+60086564 | MS.gene061573:CDS |
| CATGACATACATGTTAGAAA+GGG | 0.558691 | 3.2:+60087610 | MS.gene061573:CDS |
| CGCCATCAGAGGAAGAAGCT+AGG | 0.562418 | 3.2:+60087300 | MS.gene061573:CDS |
| TCCTCGCAAGCTAGTTGAGA+TGG | 0.569053 | 3.2:+60087058 | MS.gene061573:CDS |
| TCCGATTCAGATACACCAAA+CGG | 0.581293 | 3.2:+60087212 | MS.gene061573:CDS |
| TTGCGAGGATAAGGGTGCAT+AGG | 0.596615 | 3.2:-60087044 | None:intergenic |
| GACATACATGTTAGAAAGGG+AGG | 0.598447 | 3.2:+60087613 | MS.gene061573:CDS |
| TTTCTCGACACAGAATATGT+CGG | 0.599822 | 3.2:+60086711 | MS.gene061573:intron |
| CCTGCAGTAGGAAATGTAGC+TGG | 0.607570 | 3.2:+60086292 | MS.gene061573:CDS |
| TGAATTCAAAACGCCATCAG+AGG | 0.625902 | 3.2:+60087289 | MS.gene061573:CDS |
| CGCAAGCTAGTTGAGATGGT+CGG | 0.633361 | 3.2:+60087062 | MS.gene061573:CDS |
| ATACATGTTAGAAAGGGAGG+AGG | 0.634259 | 3.2:+60087616 | MS.gene061573:CDS |
| ACCATCTCAACTAGCTTGCG+AGG | 0.635742 | 3.2:-60087059 | None:intergenic |
| CAGCTACATTTCCTACTGCA+GGG | 0.637750 | 3.2:-60086291 | None:intergenic |
| TATCTGAATCGGATGAACCA+AGG | 0.665190 | 3.2:-60087202 | None:intergenic |
| TCCAGTGTTAGCCCTGCAGT+AGG | 0.679374 | 3.2:+60086280 | MS.gene061573:CDS |
| TGCAAGCATTACAAACACCA+AGG | 0.703682 | 3.2:+60086983 | MS.gene061573:CDS |
| ATATGTCGGTTCAAAGACTG+CGG | 0.730672 | 3.2:+60086725 | MS.gene061573:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACTTAATAAATATTGT+AGG | - | chr3.2:60084749-60084768 | None:intergenic | 10.0% |
| !! | AAAAGTTTAAATAAGTAAAA+TGG | + | chr3.2:60084669-60084688 | MS.gene061573:intron | 10.0% |
| !! | TTAAAAATAAAAATCATGTT+TGG | - | chr3.2:60085483-60085502 | None:intergenic | 10.0% |
| !!! | TAATAATTTTTTTGTAGAAA+TGG | + | chr3.2:60084838-60084857 | MS.gene061573:intron | 10.0% |
| !! | CAAATAATGGTATAATTATA+GGG | + | chr3.2:60085055-60085074 | MS.gene061573:intron | 15.0% |
| !! | TCAAATAATGGTATAATTAT+AGG | + | chr3.2:60085054-60085073 | MS.gene061573:intron | 15.0% |
| !!! | AAAAGTATGGATTAATTTTA+TGG | - | chr3.2:60084793-60084812 | None:intergenic | 15.0% |
| !!! | AATAATATTGAGATTTTTGT+GGG | - | chr3.2:60085673-60085692 | None:intergenic | 15.0% |
| !!! | ATATTGTCATAATTTTTTAG+AGG | + | chr3.2:60084994-60085013 | MS.gene061573:intron | 15.0% |
| !!! | ATTTTTCTATTTCAAAATGT+AGG | + | chr3.2:60086237-60086256 | MS.gene061573:intron | 15.0% |
| !!! | TAATAATATTGAGATTTTTG+TGG | - | chr3.2:60085674-60085693 | None:intergenic | 15.0% |
| !!! | TTTTTCATAAAATAAGTTAG+CGG | - | chr3.2:60085113-60085132 | None:intergenic | 15.0% |
| !! | ACAAGGAAATTAATTAATGA+AGG | + | chr3.2:60086649-60086668 | MS.gene061573:intron | 20.0% |
| !! | AGCAAAAATTATACAATGAA+AGG | - | chr3.2:60086047-60086066 | None:intergenic | 20.0% |
| !! | TAATTGTGAATAAGATGAAA+TGG | - | chr3.2:60087382-60087401 | None:intergenic | 20.0% |
| !! | TAGAAATGTTGAATTGAAAA+GGG | - | chr3.2:60085631-60085650 | None:intergenic | 20.0% |
| !! | TCAAATGTTGGTATATTTAA+TGG | - | chr3.2:60084716-60084735 | None:intergenic | 20.0% |
| !! | TTAGAAATGTTGAATTGAAA+AGG | - | chr3.2:60085632-60085651 | None:intergenic | 20.0% |
| !!! | AATTTTCTTTGTACTTCAAT+AGG | + | chr3.2:60086471-60086490 | MS.gene061573:intron | 20.0% |
| !!! | AGAACTTGATTCTAAAAATA+TGG | + | chr3.2:60085441-60085460 | MS.gene061573:intron | 20.0% |
| !!! | ATTGTTTTGTTTATGGTTTA+TGG | - | chr3.2:60086815-60086834 | None:intergenic | 20.0% |
| !!! | TAAAAAATAATCCCTACTTT+TGG | + | chr3.2:60085530-60085549 | MS.gene061573:intron | 20.0% |
| !!! | TGATTTGGTATAATTGATTT+TGG | + | chr3.2:60085398-60085417 | MS.gene061573:intron | 20.0% |
| ! | AAGTGTAGATAAAACTGATT+TGG | - | chr3.2:60087171-60087190 | None:intergenic | 25.0% |
| ! | ACTTAACTTAGATATCCTAT+AGG | - | chr3.2:60086855-60086874 | None:intergenic | 25.0% |
| ! | AGCTATACTTTCCTAATAAA+TGG | - | chr3.2:60086628-60086647 | None:intergenic | 25.0% |
| ! | CTTAACTTAGATATCCTATA+GGG | - | chr3.2:60086854-60086873 | None:intergenic | 25.0% |
| ! | GGAGAACTAAAATCAAATAA+TGG | + | chr3.2:60085042-60085061 | MS.gene061573:intron | 25.0% |
| ! | GTTCGAAATTTCCATTTATT+AGG | + | chr3.2:60086614-60086633 | MS.gene061573:intron | 25.0% |
| ! | TAAATGATTTCTGTTCTAGT+AGG | + | chr3.2:60086147-60086166 | MS.gene061573:intron | 25.0% |
| ! | TCACTTAGAAAAAGTTTGAA+GGG | + | chr3.2:60085958-60085977 | MS.gene061573:intron | 25.0% |
| ! | TGGAAATTGCAAAATTGATT+TGG | + | chr3.2:60085383-60085402 | MS.gene061573:intron | 25.0% |
| ! | TTCACTTAGAAAAAGTTTGA+AGG | + | chr3.2:60085957-60085976 | MS.gene061573:intron | 25.0% |
| !! | AAACAATGCTAAGATTTTGA+TGG | + | chr3.2:60086828-60086847 | MS.gene061573:intron | 25.0% |
| !! | AGTGTAGATAAAACTGATTT+GGG | - | chr3.2:60087170-60087189 | None:intergenic | 25.0% |
| !! | ATTTTATGGATGGAAAATGT+TGG | - | chr3.2:60084779-60084798 | None:intergenic | 25.0% |
| !! | GTCAAACTCTTAAACTTTTT+GGG | + | chr3.2:60087522-60087541 | MS.gene061573:CDS | 25.0% |
| !! | TCAATTTTGCAATTTCCAAA+AGG | - | chr3.2:60085381-60085400 | None:intergenic | 25.0% |
| !! | TGAATAAGATGAAATGGATT+AGG | - | chr3.2:60087376-60087395 | None:intergenic | 25.0% |
| !!! | AAATCAGTTTTATCTACACT+TGG | + | chr3.2:60087170-60087189 | MS.gene061573:CDS | 25.0% |
| !!! | GTATGGATTAATTTTATGGA+TGG | - | chr3.2:60084789-60084808 | None:intergenic | 25.0% |
| !!! | TCTCATATGTCTTTTTTTGT+TGG | - | chr3.2:60085255-60085274 | None:intergenic | 25.0% |
| !!! | TCTTAGCATTGTTTTGTTTA+TGG | - | chr3.2:60086822-60086841 | None:intergenic | 25.0% |
| ACATCATACATGTATTCATG+TGG | + | chr3.2:60086083-60086102 | MS.gene061573:intron | 30.0% | |
| AGAAATTTCAATCCCGAAAA+AGG | + | chr3.2:60087091-60087110 | MS.gene061573:CDS | 30.0% | |
| CAAACAATATGCAGTACTTA+GGG | + | chr3.2:60086019-60086038 | MS.gene061573:intron | 30.0% | |
| CATGACATACATGTTAGAAA+GGG | + | chr3.2:60087610-60087629 | MS.gene061573:CDS | 30.0% | |
| CTCTGTTTCGATATAGTATA+TGG | - | chr3.2:60086505-60086524 | None:intergenic | 30.0% | |
| GACAATGCATAATATATGCA+AGG | + | chr3.2:60085210-60085229 | MS.gene061573:intron | 30.0% | |
| GGATGACTAAAATCAAATGT+TGG | - | chr3.2:60084728-60084747 | None:intergenic | 30.0% | |
| GTTAGACTGACTAAAAAGTA+TGG | - | chr3.2:60084806-60084825 | None:intergenic | 30.0% | |
| TCAAACAATATGCAGTACTT+AGG | + | chr3.2:60086018-60086037 | MS.gene061573:intron | 30.0% | |
| TCATGACATACATGTTAGAA+AGG | + | chr3.2:60087609-60087628 | MS.gene061573:CDS | 30.0% | |
| TCTAACATGTATGTCATGAT+TGG | - | chr3.2:60087608-60087627 | None:intergenic | 30.0% | |
| TTCAAAATGTAGGATCAAGA+TGG | + | chr3.2:60086247-60086266 | MS.gene061573:intron | 30.0% | |
| TTTGTAGAACACTTTGATTG+TGG | + | chr3.2:60084519-60084538 | MS.gene061573:intron | 30.0% | |
| ! | AAAAGCCTGAGGAATATTTT+AGG | + | chr3.2:60085021-60085040 | MS.gene061573:intron | 30.0% |
| ! | AAGTACTGCATATTGTTTGA+GGG | - | chr3.2:60086018-60086037 | None:intergenic | 30.0% |
| ! | AGGAATTTCAATTGATTCCT+TGG | - | chr3.2:60087003-60087022 | None:intergenic | 30.0% |
| ! | ATTTTGCAATTTCCAAAAGG+TGG | - | chr3.2:60085378-60085397 | None:intergenic | 30.0% |
| ! | CGTCAAACTCTTAAACTTTT+TGG | + | chr3.2:60087521-60087540 | MS.gene061573:CDS | 30.0% |
| ! | GCAACTTATTTGAGATAGAA+GGG | + | chr3.2:60086883-60086902 | MS.gene061573:intron | 30.0% |
| ! | TAAGTACTGCATATTGTTTG+AGG | - | chr3.2:60086019-60086038 | None:intergenic | 30.0% |
| ! | TGCAACTTATTTGAGATAGA+AGG | + | chr3.2:60086882-60086901 | MS.gene061573:intron | 30.0% |
| ! | TGTCTATAGGTGTAGTTTTT+AGG | - | chr3.2:60085145-60085164 | None:intergenic | 30.0% |
| ! | TTAGAGTTCATTGCCTTTTT+CGG | - | chr3.2:60087107-60087126 | None:intergenic | 30.0% |
| ! | TTAGGAAAGTATAGCTAACA+AGG | + | chr3.2:60086632-60086651 | MS.gene061573:intron | 30.0% |
| !! | ATAAAACTGATTTGGGAGAT+TGG | - | chr3.2:60087163-60087182 | None:intergenic | 30.0% |
| !! | TATAGGTGTAGTTTTTAGGA+TGG | - | chr3.2:60085141-60085160 | None:intergenic | 30.0% |
| !! | TTTTGGTACTGAAATGGATA+TGG | + | chr3.2:60085547-60085566 | MS.gene061573:intron | 30.0% |
| !!! | ATGGACCATATACTTTTTCA+AGG | - | chr3.2:60084697-60084716 | None:intergenic | 30.0% |
| !!! | GTATTTTTTGTTCCACCTTT+TGG | + | chr3.2:60085363-60085382 | MS.gene061573:intron | 30.0% |
| !!! | TGCTCAGAAGTTTTTTTCTA+AGG | + | chr3.2:60086764-60086783 | MS.gene061573:CDS | 30.0% |
| !!! | TGGACCATATACTTTTTCAA+GGG | - | chr3.2:60084696-60084715 | None:intergenic | 30.0% |
| ACACCTATAGACATAGACAT+AGG | + | chr3.2:60085152-60085171 | MS.gene061573:intron | 35.0% | |
| AGTACTGCATATTGTTTGAG+GGG | - | chr3.2:60086017-60086036 | None:intergenic | 35.0% | |
| ATAGGAGATCTTGTCTTTGT+GGG | + | chr3.2:60085170-60085189 | MS.gene061573:intron | 35.0% | |
| ATTAAACACACTTTCTCTGC+GGG | - | chr3.2:60085724-60085743 | None:intergenic | 35.0% | |
| CAGAAATCATTTATCCACCA+AGG | - | chr3.2:60086140-60086159 | None:intergenic | 35.0% | |
| CATAATATATGCAAGGTTCG+AGG | + | chr3.2:60085217-60085236 | MS.gene061573:intron | 35.0% | |
| CATACATGTATTCATGTGGA+GGG | + | chr3.2:60086087-60086106 | MS.gene061573:intron | 35.0% | |
| CATTAAACACACTTTCTCTG+CGG | - | chr3.2:60085725-60085744 | None:intergenic | 35.0% | |
| CCATTTCAGTACCAAAAGTA+GGG | - | chr3.2:60085544-60085563 | None:intergenic | 35.0% | |
| CCATTTCTAAGCCTATGTTA+AGG | - | chr3.2:60085885-60085904 | None:intergenic | 35.0% | |
| CCTGATATGGAATCAAACAA+AGG | - | chr3.2:60086947-60086966 | None:intergenic | 35.0% | |
| CCTTAACATAGGCTTAGAAA+TGG | + | chr3.2:60085882-60085901 | MS.gene061573:intron | 35.0% | |
| GTAGCTAAACTCTCATCATT+GGG | + | chr3.2:60085806-60085825 | MS.gene061573:intron | 35.0% | |
| GTTCTCCTAAAATATTCCTC+AGG | - | chr3.2:60085029-60085048 | None:intergenic | 35.0% | |
| TACAGAGATGAATGATTCCT+TGG | + | chr3.2:60086120-60086139 | MS.gene061573:intron | 35.0% | |
| TAGCTAAACTCTCATCATTG+GGG | + | chr3.2:60085807-60085826 | MS.gene061573:intron | 35.0% | |
| TATCGAAACAGAGAGAAAGA+TGG | + | chr3.2:60086512-60086531 | MS.gene061573:CDS | 35.0% | |
| TATGCTCTTAAGGTTCTCTA+TGG | + | chr3.2:60086370-60086389 | MS.gene061573:intron | 35.0% | |
| TATGGATGGAAAATGTTGGA+GGG | - | chr3.2:60084775-60084794 | None:intergenic | 35.0% | |
| TCATACATGTATTCATGTGG+AGG | + | chr3.2:60086086-60086105 | MS.gene061573:intron | 35.0% | |
| TCCATTTCAGTACCAAAAGT+AGG | - | chr3.2:60085545-60085564 | None:intergenic | 35.0% | |
| TCTCCTATGTCTATGTCTAT+AGG | - | chr3.2:60085158-60085177 | None:intergenic | 35.0% | |
| TCTTTGTACTTCAATAGGCA+AGG | + | chr3.2:60086476-60086495 | MS.gene061573:intron | 35.0% | |
| TGGACACAACTAATCGATAT+CGG | - | chr3.2:60087248-60087267 | None:intergenic | 35.0% | |
| TGTAGCTAAACTCTCATCAT+TGG | + | chr3.2:60085805-60085824 | MS.gene061573:intron | 35.0% | |
| TTAGCGGCACAATTTCTTTA+GGG | - | chr3.2:60085097-60085116 | None:intergenic | 35.0% | |
| TTATGGATGGAAAATGTTGG+AGG | - | chr3.2:60084776-60084795 | None:intergenic | 35.0% | |
| TTTCTCGACACAGAATATGT+CGG | + | chr3.2:60086711-60086730 | MS.gene061573:intron | 35.0% | |
| ! | ACCATCTTTTCCAACAATTG+AGG | + | chr3.2:60087574-60087593 | MS.gene061573:CDS | 35.0% |
| ! | CAGAAGCTTTGGTACATAAT+AGG | - | chr3.2:60085787-60085806 | None:intergenic | 35.0% |
| ! | CCTTTGTTTGATTCCATATC+AGG | + | chr3.2:60086944-60086963 | MS.gene061573:intron | 35.0% |
| ! | CTGAGTTGAATATGAGTAAC+AGG | - | chr3.2:60086325-60086344 | None:intergenic | 35.0% |
| ! | TAGAGTTCATTGCCTTTTTC+GGG | - | chr3.2:60087106-60087125 | None:intergenic | 35.0% |
| ! | TGGTCCCTTGAAAAAGTATA+TGG | + | chr3.2:60084689-60084708 | MS.gene061573:intron | 35.0% |
| !! | TAAGATTTTGATGGCCCTAT+AGG | + | chr3.2:60086837-60086856 | MS.gene061573:intron | 35.0% |
| AAGCTTGTACAACTTGTAGC+TGG | + | chr3.2:60085303-60085322 | MS.gene061573:intron | 40.0% | |
| AGAGATGAATGATTCCTTGG+TGG | + | chr3.2:60086123-60086142 | MS.gene061573:intron | 40.0% | |
| AGCTAAACTCTCATCATTGG+GGG | + | chr3.2:60085808-60085827 | MS.gene061573:intron | 40.0% | |
| AGGAAGTTAGTTACCAGAAG+AGG | - | chr3.2:60087356-60087375 | None:intergenic | 40.0% | |
| ATACATGTTAGAAAGGGAGG+AGG | + | chr3.2:60087616-60087635 | MS.gene061573:CDS | 40.0% | |
| ATCGGAGATAAACTTCCGTT+TGG | - | chr3.2:60087230-60087249 | None:intergenic | 40.0% | |
| CACAAGTACTATTCACTTGG+AGG | + | chr3.2:60085759-60085778 | MS.gene061573:intron | 40.0% | |
| CATAGGAGATCTTGTCTTTG+TGG | + | chr3.2:60085169-60085188 | MS.gene061573:intron | 40.0% | |
| CGCGAATGATTATGCTCTTA+AGG | + | chr3.2:60086360-60086379 | MS.gene061573:CDS | 40.0% | |
| CTCCAAGTGAATAGTACTTG+TGG | - | chr3.2:60085761-60085780 | None:intergenic | 40.0% | |
| CTCCACAAGTACTATTCACT+TGG | + | chr3.2:60085756-60085775 | MS.gene061573:intron | 40.0% | |
| CTTGAAGCCTTAAAGCTGTA+TGG | + | chr3.2:60086559-60086578 | MS.gene061573:CDS | 40.0% | |
| GACATACATGTTAGAAAGGG+AGG | + | chr3.2:60087613-60087632 | MS.gene061573:CDS | 40.0% | |
| GAGTTTAGCTACAGAAGCTT+TGG | - | chr3.2:60085798-60085817 | None:intergenic | 40.0% | |
| GCCTCAATTGTTGGAAAAGA+TGG | - | chr3.2:60087578-60087597 | None:intergenic | 40.0% | |
| GGAGGAAAATTGGAACTTCT+TGG | + | chr3.2:60087634-60087653 | MS.gene061573:CDS | 40.0% | |
| GTGAATAGTACTTGTGGAGT+AGG | - | chr3.2:60085755-60085774 | None:intergenic | 40.0% | |
| GTTAGCGGCACAATTTCTTT+AGG | - | chr3.2:60085098-60085117 | None:intergenic | 40.0% | |
| TAGAAAGGGAGGAGGAAAAT+TGG | + | chr3.2:60087624-60087643 | MS.gene061573:CDS | 40.0% | |
| TATCTGAATCGGATGAACCA+AGG | - | chr3.2:60087205-60087224 | None:intergenic | 40.0% | |
| TCATGATGAGAAACCTCTTC+TGG | + | chr3.2:60087340-60087359 | MS.gene061573:CDS | 40.0% | |
| TCCGATTCAGATACACCAAA+CGG | + | chr3.2:60087212-60087231 | MS.gene061573:CDS | 40.0% | |
| TCTGTTCTAGTAGGCTCTTA+AGG | + | chr3.2:60086156-60086175 | MS.gene061573:intron | 40.0% | |
| TGAATTCAAAACGCCATCAG+AGG | + | chr3.2:60087289-60087308 | MS.gene061573:CDS | 40.0% | |
| TGCAAGCATTACAAACACCA+AGG | + | chr3.2:60086983-60087002 | MS.gene061573:CDS | 40.0% | |
| TTAGAGGAATCAAAAGCCTG+AGG | + | chr3.2:60085010-60085029 | MS.gene061573:intron | 40.0% | |
| ! | TGAAGGAGTATGATTGTGCT+TGG | + | chr3.2:60086666-60086685 | MS.gene061573:intron | 40.0% |
| !! | ATAGGCTTACGTTTTGGTCT+AGG | - | chr3.2:60087029-60087048 | None:intergenic | 40.0% |
| !! | ATATGTCGGTTCAAAGACTG+CGG | + | chr3.2:60086725-60086744 | MS.gene061573:CDS | 40.0% |
| !! | CATACAGCTTTAAGGCTTCA+AGG | - | chr3.2:60086561-60086580 | None:intergenic | 40.0% |
| !! | CCCTACTTTTGGTACTGAAA+TGG | + | chr3.2:60085541-60085560 | MS.gene061573:intron | 40.0% |
| !! | TCCGTTTGGTGTATCTGAAT+CGG | - | chr3.2:60087216-60087235 | None:intergenic | 40.0% |
| !!! | ATGTCTTTTTTTGTTGGCCG+AGG | - | chr3.2:60085249-60085268 | None:intergenic | 40.0% |
| AACCCAACACGCCTTAACAT+AGG | + | chr3.2:60085871-60085890 | MS.gene061573:intron | 45.0% | |
| AAGCCTATGTTAAGGCGTGT+TGG | - | chr3.2:60085877-60085896 | None:intergenic | 45.0% | |
| AAGCCTTAAAGCTGTATGGC+CGG | + | chr3.2:60086563-60086582 | MS.gene061573:CDS | 45.0% | |
| AAGGTTCGAGGTTGAAACCT+CGG | + | chr3.2:60085229-60085248 | MS.gene061573:intron | 45.0% | |
| AGCCTATGTTAAGGCGTGTT+GGG | - | chr3.2:60085876-60085895 | None:intergenic | 45.0% | |
| ATCGGATGAACCAAGGCTTT+CGG | - | chr3.2:60087198-60087217 | None:intergenic | 45.0% | |
| CAGCTACATTTCCTACTGCA+GGG | - | chr3.2:60086294-60086313 | None:intergenic | 45.0% | |
| CAGGTCTGAAAACACTTGCT+TGG | - | chr3.2:60087268-60087287 | None:intergenic | 45.0% | |
| CTAGCGATAAGATCAAGTGC+AGG | - | chr3.2:60087438-60087457 | None:intergenic | 45.0% | |
| GGTTTGCATGCCTCAATTGT+TGG | - | chr3.2:60087587-60087606 | None:intergenic | 45.0% | |
| TCTGAGCATGACTTCGAATC+TGG | - | chr3.2:60086752-60086771 | None:intergenic | 45.0% | |
| ! | CAACTAGCTTGCGAGGATAA+GGG | - | chr3.2:60087055-60087074 | None:intergenic | 45.0% |
| ! | TCAACTAGCTTGCGAGGATA+AGG | - | chr3.2:60087056-60087075 | None:intergenic | 45.0% |
| ! | TTAAGGCGTGTTGGGTTTTG+CGG | - | chr3.2:60085868-60085887 | None:intergenic | 45.0% |
| !! | GATGGCGTTTTGAATTCAGC+AGG | - | chr3.2:60087287-60087306 | None:intergenic | 45.0% |
| !! | TTACGTTTTGGTCTAGGAGG+AGG | - | chr3.2:60087023-60087042 | None:intergenic | 45.0% |
| !! | AAAATTATTAAAAAATATGA+AGG | - | chr3.2:60084828-60084847 | None:intergenic | 5.0% |
| !!! | AATTTTCTATTTTATTTTTT+AGG | - | chr3.2:60085340-60085359 | None:intergenic | 5.0% |
| !!! | GTTAAAAAAATTATAATTTT+TGG | + | chr3.2:60084968-60084987 | MS.gene061573:intron | 5.0% |
| ACACTTGGTTCCGAAAGCCT+TGG | + | chr3.2:60087185-60087204 | MS.gene061573:CDS | 50.0% | |
| AGCCTAGCTTCTTCCTCTGA+TGG | - | chr3.2:60087305-60087324 | None:intergenic | 50.0% | |
| AGCCTTAAAGCTGTATGGCC+GGG | + | chr3.2:60086564-60086583 | MS.gene061573:CDS | 50.0% | |
| CCAGCTACATTTCCTACTGC+AGG | - | chr3.2:60086295-60086314 | None:intergenic | 50.0% | |
| CCTGCAGTAGGAAATGTAGC+TGG | + | chr3.2:60086292-60086311 | MS.gene061573:CDS | 50.0% | |
| CGCAAGCTAGTTGAGATGGT+CGG | + | chr3.2:60087062-60087081 | MS.gene061573:CDS | 50.0% | |
| CTTTGTGGGCTTAGCTCAGT+TGG | + | chr3.2:60085184-60085203 | MS.gene061573:intron | 50.0% | |
| GTGTCGCGAAGAACCTGATA+TGG | - | chr3.2:60086960-60086979 | None:intergenic | 50.0% | |
| TCCTCGCAAGCTAGTTGAGA+TGG | + | chr3.2:60087058-60087077 | MS.gene061573:CDS | 50.0% | |
| ! | ACCATCTCAACTAGCTTGCG+AGG | - | chr3.2:60087062-60087081 | None:intergenic | 50.0% |
| ! | GGGTGCATAGGCTTACGTTT+TGG | - | chr3.2:60087035-60087054 | None:intergenic | 50.0% |
| ! | TTGCGAGGATAAGGGTGCAT+AGG | - | chr3.2:60087047-60087066 | None:intergenic | 50.0% |
| !! | GGCTTACGTTTTGGTCTAGG+AGG | - | chr3.2:60087026-60087045 | None:intergenic | 50.0% |
| CATACCTTCAATGCGTCGCC+AGG | - | chr3.2:60086590-60086609 | None:intergenic | 55.0% | |
| CGCCATCAGAGGAAGAAGCT+AGG | + | chr3.2:60087300-60087319 | MS.gene061573:CDS | 55.0% | |
| CTGGCGACGCATTGAAGGTA+TGG | + | chr3.2:60086588-60086607 | MS.gene061573:intron | 55.0% | |
| GTGGGCTTAGCTCAGTTGGT+AGG | + | chr3.2:60085188-60085207 | MS.gene061573:intron | 55.0% | |
| TCCAGTGTTAGCCCTGCAGT+AGG | + | chr3.2:60086280-60086299 | MS.gene061573:CDS | 55.0% | |
| TCCTACTGCAGGGCTAACAC+TGG | - | chr3.2:60086284-60086303 | None:intergenic | 55.0% | |
| ! | CGACGCATTGAAGGTATGGC+TGG | + | chr3.2:60086592-60086611 | MS.gene061573:intron | 55.0% |
| GGCCCGGCCATACAGCTTTA+AGG | - | chr3.2:60086569-60086588 | None:intergenic | 60.0% | |
| TAAAGCTGTATGGCCGGGCC+TGG | + | chr3.2:60086569-60086588 | MS.gene061573:CDS | 60.0% | |
| CTTCAATGCGTCGCCAGGCC+CGG | - | chr3.2:60086585-60086604 | None:intergenic | 65.0% | |
| CGGGCCTGGCGACGCATTGA+AGG | + | chr3.2:60086583-60086602 | MS.gene061573:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 60084437 | 60087697 | 60084437 | ID=MS.gene061573 |
| chr3.2 | mRNA | 60084437 | 60087697 | 60084437 | ID=MS.gene061573.t1;Parent=MS.gene061573 |
| chr3.2 | exon | 60084437 | 60084448 | 60084437 | ID=MS.gene061573.t1.exon1;Parent=MS.gene061573.t1 |
| chr3.2 | CDS | 60084437 | 60084448 | 60084437 | ID=cds.MS.gene061573.t1;Parent=MS.gene061573.t1 |
| chr3.2 | exon | 60086259 | 60086381 | 60086259 | ID=MS.gene061573.t1.exon2;Parent=MS.gene061573.t1 |
| chr3.2 | CDS | 60086259 | 60086381 | 60086259 | ID=cds.MS.gene061573.t1;Parent=MS.gene061573.t1 |
| chr3.2 | exon | 60086493 | 60086604 | 60086493 | ID=MS.gene061573.t1.exon3;Parent=MS.gene061573.t1 |
| chr3.2 | CDS | 60086493 | 60086604 | 60086493 | ID=cds.MS.gene061573.t1;Parent=MS.gene061573.t1 |
| chr3.2 | exon | 60086724 | 60086785 | 60086724 | ID=MS.gene061573.t1.exon4;Parent=MS.gene061573.t1 |
| chr3.2 | CDS | 60086724 | 60086785 | 60086724 | ID=cds.MS.gene061573.t1;Parent=MS.gene061573.t1 |
| chr3.2 | exon | 60086966 | 60087361 | 60086966 | ID=MS.gene061573.t1.exon5;Parent=MS.gene061573.t1 |
| chr3.2 | CDS | 60086966 | 60087361 | 60086966 | ID=cds.MS.gene061573.t1;Parent=MS.gene061573.t1 |
| chr3.2 | exon | 60087458 | 60087697 | 60087458 | ID=MS.gene061573.t1.exon6;Parent=MS.gene061573.t1 |
| chr3.2 | CDS | 60087458 | 60087697 | 60087458 | ID=cds.MS.gene061573.t1;Parent=MS.gene061573.t1 |
| Gene Sequence |
| Protein sequence |
