Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061717.t1 | XP_013441824.1 | 97.5 | 281 | 7 | 0 | 1 | 281 | 93 | 373 | 4.00E-152 | 547.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061717.t1 | A0A072TEB1 | 97.5 | 281 | 7 | 0 | 1 | 281 | 93 | 373 | 2.9e-152 | 547.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055331 | MS.gene061717 | -0.807138 | 5.85E-50 | -1.69E-46 |
| MS.gene059778 | MS.gene061717 | -0.81545 | 9.19E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061717.t1 | MTR_0493s0030 | 97.509 | 281 | 7 | 0 | 1 | 281 | 93 | 373 | 0.0 | 559 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061717.t1 | AT1G74640 | 75.986 | 279 | 66 | 1 | 1 | 278 | 90 | 368 | 1.28e-160 | 451 |
Find 75 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCAACTGCAGGCGCCTTTA+AGG | 0.104317 | 8.1:+16739082 | None:intergenic |
| CAATTCTTGCAACAGAATTT+TGG | 0.177594 | 8.1:-16738669 | MS.gene061717:CDS |
| AGTAGTCCGTGCTGCGAAAA+AGG | 0.196098 | 8.1:-16739503 | MS.gene061717:CDS |
| CCTTCAACTCTTTGCAGATT+TGG | 0.235687 | 8.1:-16738859 | MS.gene061717:CDS |
| GGTCCCCTTCCTATCGTATT+TGG | 0.283801 | 8.1:-16739433 | MS.gene061717:CDS |
| ATGGCTGGTGTCACGTTATC+AGG | 0.302525 | 8.1:+16738984 | None:intergenic |
| TGTTAAACTAGACAACAATT+TGG | 0.317013 | 8.1:-16739557 | MS.gene061717:intron |
| TCTTCTAAGAGGCACCTTAA+AGG | 0.331435 | 8.1:-16739096 | MS.gene061717:CDS |
| TTACCCGCGGCTTTCTTGAC+TGG | 0.345149 | 8.1:-16738915 | MS.gene061717:CDS |
| AACTCCTCACGGGATGTTAC+AGG | 0.348170 | 8.1:+16738882 | None:intergenic |
| TCAGCATTGTAATCAATCTT+TGG | 0.350565 | 8.1:+16740612 | None:intergenic |
| CAACTAAAGGGTCTCCTAAA+AGG | 0.373750 | 8.1:-16738809 | MS.gene061717:CDS |
| ACCTTAAAGGCGCCTGCAGT+TGG | 0.374128 | 8.1:-16739083 | MS.gene061717:CDS |
| TTAGTTGATACAACAAATAC+TGG | 0.382699 | 8.1:+16738825 | None:intergenic |
| GCAACAGCAGCTATAGCTTT+GGG | 0.386160 | 8.1:+16739469 | None:intergenic |
| ATTGTTGATTGGCCTGGTCT+AGG | 0.387080 | 8.1:-16740648 | MS.gene061717:CDS |
| CCAAATCTGCAAAGAGTTGA+AGG | 0.392385 | 8.1:+16738859 | None:intergenic |
| TGCAACAGCAGCTATAGCTT+TGG | 0.393323 | 8.1:+16739468 | None:intergenic |
| GCTGTTGCACCCACTTGGTC+TGG | 0.395668 | 8.1:-16739454 | MS.gene061717:CDS |
| ACCGCACTACTATTGTTGAT+TGG | 0.409875 | 8.1:-16740659 | MS.gene061717:CDS |
| CCTTAAAGGCGCCTGCAGTT+GGG | 0.416753 | 8.1:-16739082 | MS.gene061717:CDS |
| GATTTCATCAATTCACCCTA+TGG | 0.425874 | 8.1:-16740567 | MS.gene061717:CDS |
| GTATTTGTTGTATCAACTAA+AGG | 0.441722 | 8.1:-16738822 | MS.gene061717:CDS |
| TATTTGTTGTATCAACTAAA+GGG | 0.442235 | 8.1:-16738821 | MS.gene061717:CDS |
| AACAGTGCTCACATCAGAAA+TGG | 0.454974 | 8.1:+16740737 | None:intergenic |
| GCTGAGATGGAAGCTCTTAA+CGG | 0.459166 | 8.1:-16738780 | MS.gene061717:CDS |
| AGCTCTTCCGCGACTAAAGC+AGG | 0.462416 | 8.1:+16738696 | None:intergenic |
| AGGGTCTCCTAAAAGGTCTA+AGG | 0.474040 | 8.1:-16738802 | MS.gene061717:CDS |
| TGATTACAATGCTGACGTCT+TGG | 0.475636 | 8.1:-16740604 | MS.gene061717:CDS |
| TCAACTCTTTGCAGATTTGG+AGG | 0.476813 | 8.1:-16738856 | MS.gene061717:CDS |
| TTGTTTCCATGCTGGAATCT+CGG | 0.482856 | 8.1:+16739410 | None:intergenic |
| TAGCTGCTGTTGCACCCACT+TGG | 0.485030 | 8.1:-16739459 | MS.gene061717:CDS |
| ACTACTATTGTTGATTGGCC+TGG | 0.490253 | 8.1:-16740654 | MS.gene061717:CDS |
| TAAAAGGTCTAAGGCTGAGA+TGG | 0.498747 | 8.1:-16738793 | MS.gene061717:CDS |
| CAACTCTTTGCAGATTTGGA+GGG | 0.500215 | 8.1:-16738855 | MS.gene061717:CDS |
| GAAGCTCTTAACGGAGCTAA+AGG | 0.503984 | 8.1:-16738771 | MS.gene061717:CDS |
| CATGTGATTTGTACTGCGAT+TGG | 0.504645 | 8.1:+16739018 | None:intergenic |
| TAAAGGAGTGAGCAAGTTTG+TGG | 0.516133 | 8.1:-16738754 | MS.gene061717:CDS |
| ATAGTACCTTGTTTCCATGC+TGG | 0.516722 | 8.1:+16739402 | None:intergenic |
| TGCATATCTGCTTTCGACAA+TGG | 0.528904 | 8.1:+16738965 | None:intergenic |
| TGGTGTCACGTTATCAGGAT+TGG | 0.532092 | 8.1:+16738989 | None:intergenic |
| GACAGGTATGGTCTTCTAAG+AGG | 0.537611 | 8.1:-16739107 | MS.gene061717:intron |
| GAAGACATTGCTCAACGTAA+TGG | 0.538261 | 8.1:-16740693 | MS.gene061717:CDS |
| TACACCATCCACCCAACTGC+AGG | 0.541976 | 8.1:+16739071 | None:intergenic |
| AGCAAGTTTGTGGAAGTGCC+TGG | 0.543593 | 8.1:-16738744 | MS.gene061717:CDS |
| GGCGCCTGCAGTTGGGTGGA+TGG | 0.552084 | 8.1:-16739075 | MS.gene061717:CDS |
| CTCGGCCAAATACGATAGGA+AGG | 0.553390 | 8.1:+16739428 | None:intergenic |
| TGGTGCTCTTCTTCCACAAG+AGG | 0.557293 | 8.1:-16738724 | MS.gene061717:CDS |
| TATCTGCTTTCGACAATGGC+TGG | 0.559916 | 8.1:+16738969 | None:intergenic |
| CACGGGATGTTACAGGGTCT+AGG | 0.561594 | 8.1:+16738889 | None:intergenic |
| AGGAAGGGGACCAGACCAAG+TGG | 0.570715 | 8.1:+16739444 | None:intergenic |
| GAGTTGAAGGAACTCCTCAC+GGG | 0.577784 | 8.1:+16738872 | None:intergenic |
| CGGCCAAATACGATAGGAAG+GGG | 0.580257 | 8.1:+16739430 | None:intergenic |
| TCTTGTGGAAGAAGAGCACC+AGG | 0.583551 | 8.1:+16738726 | None:intergenic |
| TTCTGATGTGAGCACTGTTG+AGG | 0.584543 | 8.1:-16740733 | MS.gene061717:CDS |
| AGAGTTGAAGGAACTCCTCA+CGG | 0.588545 | 8.1:+16738871 | None:intergenic |
| AAAGCAGGATACTCCTCTTG+TGG | 0.594658 | 8.1:+16738711 | None:intergenic |
| CGATCAGAATAACCTAGACC+AGG | 0.599579 | 8.1:+16740636 | None:intergenic |
| GTGCTCACATCAGAAATGGT+TGG | 0.600768 | 8.1:+16740741 | None:intergenic |
| GAATCTCGGCCAAATACGAT+AGG | 0.608486 | 8.1:+16739424 | None:intergenic |
| TAAAGGCGCCTGCAGTTGGG+TGG | 0.609424 | 8.1:-16739079 | MS.gene061717:CDS |
| GAGATTCCAGCATGGAAACA+AGG | 0.610360 | 8.1:-16739408 | MS.gene061717:intron |
| AGTCCAGTCAAGAAAGCCGC+GGG | 0.612625 | 8.1:+16738912 | None:intergenic |
| ACTCCTCACGGGATGTTACA+GGG | 0.624393 | 8.1:+16738883 | None:intergenic |
| TCGGCCAAATACGATAGGAA+GGG | 0.628777 | 8.1:+16739429 | None:intergenic |
| GAGTCCAGTCAAGAAAGCCG+CGG | 0.650624 | 8.1:+16738911 | None:intergenic |
| ATGTGAGCACTGTTGAGGAG+TGG | 0.662423 | 8.1:-16740728 | MS.gene061717:CDS |
| GCCAATCAACAATAGTAGTG+CGG | 0.675154 | 8.1:+16740658 | None:intergenic |
| GGAGTATCCTGCTTTAGTCG+CGG | 0.676120 | 8.1:-16738703 | MS.gene061717:CDS |
| AGGAGCACGTTACTTACCCG+CGG | 0.688473 | 8.1:-16738928 | MS.gene061717:CDS |
| GGAAGGGGACCAGACCAAGT+GGG | 0.693482 | 8.1:+16739445 | None:intergenic |
| ATTTGGCCGAGATTCCAGCA+TGG | 0.719142 | 8.1:-16739416 | MS.gene061717:CDS |
| TATGGTCCAGTAAAACAACC+AGG | 0.727257 | 8.1:-16740549 | MS.gene061717:intron |
| AGACCCTGTAACATCCCGTG+AGG | 0.736244 | 8.1:-16738886 | MS.gene061717:CDS |
| TATGCATTGACAAAACGACA+AGG | 0.775132 | 8.1:-16738948 | MS.gene061717:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAAAATATATTTACTAAAT+TGG | - | chr8.1:16739090-16739109 | MS.gene061717:CDS | 10.0% |
| !! | ATTAGATGGTAATATATAAA+AGG | - | chr8.1:16740091-16740110 | MS.gene061717:intron | 15.0% |
| !! | TTAGATGGTAATATATAAAA+GGG | - | chr8.1:16740092-16740111 | MS.gene061717:intron | 15.0% |
| !!! | TATTATTTATAAGCTTGTTA+AGG | + | chr8.1:16739260-16739279 | None:intergenic | 15.0% |
| !! | AAAAAAATGCTCATTGAAAA+GGG | + | chr8.1:16740031-16740050 | None:intergenic | 20.0% |
| !! | AACTACCCAAAATAATTAAA+AGG | + | chr8.1:16739021-16739040 | None:intergenic | 20.0% |
| !! | TAGATGGTAATATATAAAAG+GGG | - | chr8.1:16740093-16740112 | MS.gene061717:intron | 20.0% |
| !!! | ATTCCTCCTTTTAATTATTT+TGG | - | chr8.1:16739012-16739031 | MS.gene061717:CDS | 20.0% |
| !!! | GGTTTATTTTCTTTATTGAT+TGG | - | chr8.1:16739421-16739440 | MS.gene061717:CDS | 20.0% |
| !!! | TATTTGTTGTATCAACTAAA+GGG | - | chr8.1:16740579-16740598 | MS.gene061717:CDS | 20.0% |
| !!! | TATTTTCTTTATTGATTGGT+GGG | - | chr8.1:16739425-16739444 | MS.gene061717:CDS | 20.0% |
| !!! | TTATTTTCTTTATTGATTGG+TGG | - | chr8.1:16739424-16739443 | MS.gene061717:CDS | 20.0% |
| !!! | TTCCTCCTTTTAATTATTTT+GGG | - | chr8.1:16739013-16739032 | MS.gene061717:CDS | 20.0% |
| ! | AAAAAATGCTCATTGAAAAG+GGG | + | chr8.1:16740030-16740049 | None:intergenic | 25.0% |
| ! | AAAAGCTACATAAAAGACTT+AGG | + | chr8.1:16739350-16739369 | None:intergenic | 25.0% |
| ! | AAAGCTACATAAAAGACTTA+GGG | + | chr8.1:16739349-16739368 | None:intergenic | 25.0% |
| ! | AGATGGTAATATATAAAAGG+GGG | - | chr8.1:16740094-16740113 | MS.gene061717:intron | 25.0% |
| ! | ATATTTGAGAAATTGTGCTA+AGG | - | chr8.1:16739118-16739137 | MS.gene061717:intron | 25.0% |
| ! | GAAAAAAATGCTCATTGAAA+AGG | + | chr8.1:16740032-16740051 | None:intergenic | 25.0% |
| ! | TACCCAAAATAATTAAAAGG+AGG | + | chr8.1:16739018-16739037 | None:intergenic | 25.0% |
| ! | TATTTGAGAAATTGTGCTAA+GGG | - | chr8.1:16739119-16739138 | MS.gene061717:intron | 25.0% |
| ! | TGTAAAATTCCATCAGATAA+CGG | + | chr8.1:16739658-16739677 | None:intergenic | 25.0% |
| ! | TGTTAAACTAGACAACAATT+TGG | - | chr8.1:16739843-16739862 | MS.gene061717:intron | 25.0% |
| !! | CATTTTAGATCAGTATAGTT+CGG | - | chr8.1:16738943-16738962 | MS.gene061717:CDS | 25.0% |
| !! | TAAGTCTTTTATGTAGCTTT+TGG | - | chr8.1:16739349-16739368 | MS.gene061717:intron | 25.0% |
| !! | TTAGTTGATACAACAAATAC+TGG | + | chr8.1:16740578-16740597 | None:intergenic | 25.0% |
| !!! | GATTTCTAGTTTCTATTAGA+TGG | - | chr8.1:16740077-16740096 | MS.gene061717:intron | 25.0% |
| !!! | GTATTTGTTGTATCAACTAA+AGG | - | chr8.1:16740578-16740597 | MS.gene061717:CDS | 25.0% |
| !!! | TTTTTCAGTTGAGAAGTTTA+TGG | - | chr8.1:16739066-16739085 | MS.gene061717:CDS | 25.0% |
| AAAACAAGTTATCACCTATC+AGG | + | chr8.1:16740246-16740265 | None:intergenic | 30.0% | |
| AATACAATTCCTAATGTGCT+TGG | - | chr8.1:16739380-16739399 | MS.gene061717:intron | 30.0% | |
| CCATGATTTGAAAACTATAC+TGG | + | chr8.1:16739591-16739610 | None:intergenic | 30.0% | |
| CTAAAATAAGCCAATCCAAA+CGG | - | chr8.1:16739322-16739341 | MS.gene061717:intron | 30.0% | |
| GATCTACAGTTAACTATTGT+TGG | - | chr8.1:16739506-16739525 | MS.gene061717:CDS | 30.0% | |
| GTGACATATTCAACTAATCA+TGG | + | chr8.1:16739782-16739801 | None:intergenic | 30.0% | |
| TCAGCATTGTAATCAATCTT+TGG | + | chr8.1:16738791-16738810 | None:intergenic | 30.0% | |
| TGATTTGAAAACTATACTGG+TGG | + | chr8.1:16739588-16739607 | None:intergenic | 30.0% | |
| ! | CAATTCTTGCAACAGAATTT+TGG | - | chr8.1:16740731-16740750 | MS.gene061717:CDS | 30.0% |
| ! | CCAGTATAGTTTTCAAATCA+TGG | - | chr8.1:16739588-16739607 | MS.gene061717:intron | 30.0% |
| ! | TCCAATGATTGTCTTTTGTT+TGG | - | chr8.1:16739730-16739749 | MS.gene061717:intron | 30.0% |
| ! | TTTATTGATTGGTGGGTATT+AGG | - | chr8.1:16739432-16739451 | MS.gene061717:CDS | 30.0% |
| !! | AACAATTTGGTGATTTTTGG+TGG | - | chr8.1:16739856-16739875 | MS.gene061717:intron | 30.0% |
| !! | CCAATGATTGTCTTTTGTTT+GGG | - | chr8.1:16739731-16739750 | MS.gene061717:intron | 30.0% |
| !! | GACAACAATTTGGTGATTTT+TGG | - | chr8.1:16739853-16739872 | MS.gene061717:intron | 30.0% |
| !!! | TTATTTTGGGTAGTTTCTCT+TGG | - | chr8.1:16739026-16739045 | MS.gene061717:CDS | 30.0% |
| ATACTGGTGGTTCATTGAAT+CGG | + | chr8.1:16739575-16739594 | None:intergenic | 35.0% | |
| ATGTTTCTTCCGTTATCTGA+TGG | - | chr8.1:16739646-16739665 | MS.gene061717:intron | 35.0% | |
| CCCAAACAAAAGACAATCAT+TGG | + | chr8.1:16739734-16739753 | None:intergenic | 35.0% | |
| CTTGTTGACATCTAAATGCT+CGG | - | chr8.1:16740158-16740177 | MS.gene061717:intron | 35.0% | |
| GATTTCATCAATTCACCCTA+TGG | - | chr8.1:16738833-16738852 | MS.gene061717:CDS | 35.0% | |
| GTCTTTGTGACTAACATTGT+TGG | - | chr8.1:16739820-16739839 | MS.gene061717:intron | 35.0% | |
| TATGTCACAAACAACCTGAT+AGG | - | chr8.1:16740229-16740248 | MS.gene061717:intron | 35.0% | |
| TCAATGCTACAGTGATCAAT+TGG | + | chr8.1:16740059-16740078 | None:intergenic | 35.0% | |
| TGACGTCTTGGAAAAATTTC+TGG | - | chr8.1:16738808-16738827 | MS.gene061717:CDS | 35.0% | |
| TGTACTTGTTTCATTGTTGC+TGG | - | chr8.1:16739469-16739488 | MS.gene061717:CDS | 35.0% | |
| ! | TATGCATTGACAAAACGACA+AGG | - | chr8.1:16740452-16740471 | MS.gene061717:intron | 35.0% |
| !! | ATCAGATAACGGAAGAAACA+TGG | + | chr8.1:16739647-16739666 | None:intergenic | 35.0% |
| !!! | AATTTGGTGATTTTTGGTGG+AGG | - | chr8.1:16739859-16739878 | MS.gene061717:intron | 35.0% |
| !!! | ATTTGGTGATTTTTGGTGGA+GGG | - | chr8.1:16739860-16739879 | MS.gene061717:intron | 35.0% |
| AACAGTGCTCACATCAGAAA+TGG | + | chr8.1:16738666-16738685 | None:intergenic | 40.0% | |
| AATTCCTAATGTGCTTGGCA+GGG | - | chr8.1:16739385-16739404 | MS.gene061717:intron | 40.0% | |
| AATTGTGCTAAGGGTCTGTT+TGG | - | chr8.1:16739128-16739147 | MS.gene061717:intron | 40.0% | |
| ACCATACCTGTCAAGTTCAT+AGG | + | chr8.1:16740285-16740304 | None:intergenic | 40.0% | |
| ACCGCACTACTATTGTTGAT+TGG | - | chr8.1:16738741-16738760 | MS.gene061717:CDS | 40.0% | |
| ACTTTGACCCCACAATTTAC+AGG | + | chr8.1:16739696-16739715 | None:intergenic | 40.0% | |
| ATGACCTCTCCTGTAAATTG+TGG | - | chr8.1:16739684-16739703 | MS.gene061717:intron | 40.0% | |
| CAACTAAAGGGTCTCCTAAA+AGG | - | chr8.1:16740591-16740610 | MS.gene061717:CDS | 40.0% | |
| CAACTCTTTGCAGATTTGGA+GGG | - | chr8.1:16740545-16740564 | MS.gene061717:intron | 40.0% | |
| CATTGAATCGGTGAAAACAG+TGG | + | chr8.1:16739563-16739582 | None:intergenic | 40.0% | |
| CCAAATCTGCAAAGAGTTGA+AGG | + | chr8.1:16740544-16740563 | None:intergenic | 40.0% | |
| CCATACCTGTCAAGTTCATA+GGG | + | chr8.1:16740284-16740303 | None:intergenic | 40.0% | |
| CCTTCAACTCTTTGCAGATT+TGG | - | chr8.1:16740541-16740560 | MS.gene061717:intron | 40.0% | |
| GAAGACATTGCTCAACGTAA+TGG | - | chr8.1:16738707-16738726 | MS.gene061717:CDS | 40.0% | |
| GCCAATCAACAATAGTAGTG+CGG | + | chr8.1:16738745-16738764 | None:intergenic | 40.0% | |
| GTTTCATTGTTGCTGGTACT+TGG | - | chr8.1:16739476-16739495 | MS.gene061717:CDS | 40.0% | |
| TAAAAGACTTAGGGTCCGTT+TGG | + | chr8.1:16739340-16739359 | None:intergenic | 40.0% | |
| TAAAGGAGTGAGCAAGTTTG+TGG | - | chr8.1:16740646-16740665 | MS.gene061717:CDS | 40.0% | |
| TATGGTCCAGTAAAACAACC+AGG | - | chr8.1:16738851-16738870 | MS.gene061717:CDS | 40.0% | |
| TCAACTCTTTGCAGATTTGG+AGG | - | chr8.1:16740544-16740563 | MS.gene061717:intron | 40.0% | |
| TGACCTCTCCTGTAAATTGT+GGG | - | chr8.1:16739685-16739704 | MS.gene061717:intron | 40.0% | |
| TGATTACAATGCTGACGTCT+TGG | - | chr8.1:16738796-16738815 | MS.gene061717:CDS | 40.0% | |
| TGCATATCTGCTTTCGACAA+TGG | + | chr8.1:16740438-16740457 | None:intergenic | 40.0% | |
| TTGTTTCCATGCTGGAATCT+CGG | + | chr8.1:16739993-16740012 | None:intergenic | 40.0% | |
| ! | ACTACTATTGTTGATTGGCC+TGG | - | chr8.1:16738746-16738765 | MS.gene061717:CDS | 40.0% |
| ! | ATAGTACCTTGTTTCCATGC+TGG | + | chr8.1:16740001-16740020 | None:intergenic | 40.0% |
| ! | ATCTCAGCCTTAGACCTTTT+AGG | + | chr8.1:16740608-16740627 | None:intergenic | 40.0% |
| ! | ATTGGTGGGTATTAGGAATC+TGG | - | chr8.1:16739439-16739458 | MS.gene061717:CDS | 40.0% |
| ! | CATGTGATTTGTACTGCGAT+TGG | + | chr8.1:16740385-16740404 | None:intergenic | 40.0% |
| ! | TAAAAGGTCTAAGGCTGAGA+TGG | - | chr8.1:16740607-16740626 | MS.gene061717:CDS | 40.0% |
| !! | GGTTGTTTTACTGGACCATA+GGG | + | chr8.1:16738851-16738870 | None:intergenic | 40.0% |
| !! | TCAGTACCTGGTTGTTTTAC+TGG | + | chr8.1:16738860-16738879 | None:intergenic | 40.0% |
| !! | TCTTCTAAGAGGCACCTTAA+AGG | - | chr8.1:16740304-16740323 | MS.gene061717:intron | 40.0% |
| !! | TGGTTGTTTTACTGGACCAT+AGG | + | chr8.1:16738852-16738871 | None:intergenic | 40.0% |
| AAAACCCTGCCAAGCACATT+AGG | + | chr8.1:16739392-16739411 | None:intergenic | 45.0% | |
| AAAGCAGGATACTCCTCTTG+TGG | + | chr8.1:16740692-16740711 | None:intergenic | 45.0% | |
| ACCTGTCAAGTTCATAGGGA+AGG | + | chr8.1:16740280-16740299 | None:intergenic | 45.0% | |
| AGAGTTGAAGGAACTCCTCA+CGG | + | chr8.1:16740532-16740551 | None:intergenic | 45.0% | |
| AGGGTCTCCTAAAAGGTCTA+AGG | - | chr8.1:16740598-16740617 | MS.gene061717:CDS | 45.0% | |
| CAATTCCTAATGTGCTTGGC+AGG | - | chr8.1:16739384-16739403 | MS.gene061717:intron | 45.0% | |
| CCCTATGAACTTGACAGGTA+TGG | - | chr8.1:16740281-16740300 | MS.gene061717:intron | 45.0% | |
| CCTGTCAAGTTCATAGGGAA+GGG | + | chr8.1:16740279-16740298 | None:intergenic | 45.0% | |
| CGATCAGAATAACCTAGACC+AGG | + | chr8.1:16738767-16738786 | None:intergenic | 45.0% | |
| GAAGCTCTTAACGGAGCTAA+AGG | - | chr8.1:16740629-16740648 | MS.gene061717:CDS | 45.0% | |
| GAATCTCGGCCAAATACGAT+AGG | + | chr8.1:16739979-16739998 | None:intergenic | 45.0% | |
| GACAGGTATGGTCTTCTAAG+AGG | - | chr8.1:16740293-16740312 | MS.gene061717:intron | 45.0% | |
| GACCTCTCCTGTAAATTGTG+GGG | - | chr8.1:16739686-16739705 | MS.gene061717:intron | 45.0% | |
| GAGATTCCAGCATGGAAACA+AGG | - | chr8.1:16739992-16740011 | MS.gene061717:intron | 45.0% | |
| GCAACAGCAGCTATAGCTTT+GGG | + | chr8.1:16739934-16739953 | None:intergenic | 45.0% | |
| GCTACAGTGATCAATTGGCA+AGG | + | chr8.1:16740054-16740073 | None:intergenic | 45.0% | |
| GCTGAGATGGAAGCTCTTAA+CGG | - | chr8.1:16740620-16740639 | MS.gene061717:CDS | 45.0% | |
| GTGCTCACATCAGAAATGGT+TGG | + | chr8.1:16738662-16738681 | None:intergenic | 45.0% | |
| TATCTGCTTTCGACAATGGC+TGG | + | chr8.1:16740434-16740453 | None:intergenic | 45.0% | |
| TCGGCCAAATACGATAGGAA+GGG | + | chr8.1:16739974-16739993 | None:intergenic | 45.0% | |
| TCGGTGAAAACAGTGGTTCA+CGG | + | chr8.1:16739556-16739575 | None:intergenic | 45.0% | |
| TGCAACAGCAGCTATAGCTT+TGG | + | chr8.1:16739935-16739954 | None:intergenic | 45.0% | |
| ! | AACAGTGGTTCACGGATTAC+TGG | + | chr8.1:16739548-16739567 | None:intergenic | 45.0% |
| ! | AATGTGCTTGGCAGGGTTTT+AGG | - | chr8.1:16739392-16739411 | MS.gene061717:intron | 45.0% |
| ! | ATGTGCTTGGCAGGGTTTTA+GGG | - | chr8.1:16739393-16739412 | MS.gene061717:intron | 45.0% |
| ! | TTCTGATGTGAGCACTGTTG+AGG | - | chr8.1:16738667-16738686 | MS.gene061717:CDS | 45.0% |
| !! | ATTGTTGATTGGCCTGGTCT+AGG | - | chr8.1:16738752-16738771 | MS.gene061717:CDS | 45.0% |
| !! | CAACCAGGTACTGATAGTAG+TGG | - | chr8.1:16738866-16738885 | MS.gene061717:CDS | 45.0% |
| !! | TGGTGTCACGTTATCAGGAT+TGG | + | chr8.1:16740414-16740433 | None:intergenic | 45.0% |
| AACTCCTCACGGGATGTTAC+AGG | + | chr8.1:16740521-16740540 | None:intergenic | 50.0% | |
| ACTCCTCACGGGATGTTACA+GGG | + | chr8.1:16740520-16740539 | None:intergenic | 50.0% | |
| AGTAGTCCGTGCTGCGAAAA+AGG | - | chr8.1:16739897-16739916 | MS.gene061717:intron | 50.0% | |
| ATTTGGCCGAGATTCCAGCA+TGG | - | chr8.1:16739984-16740003 | MS.gene061717:intron | 50.0% | |
| CCCTTCCCTATGAACTTGAC+AGG | - | chr8.1:16740276-16740295 | MS.gene061717:intron | 50.0% | |
| CCTCCACTACTATCAGTACC+TGG | + | chr8.1:16738872-16738891 | None:intergenic | 50.0% | |
| CGGCCAAATACGATAGGAAG+GGG | + | chr8.1:16739973-16739992 | None:intergenic | 50.0% | |
| CTCGGCCAAATACGATAGGA+AGG | + | chr8.1:16739975-16739994 | None:intergenic | 50.0% | |
| GACCCCACAATTTACAGGAG+AGG | + | chr8.1:16739691-16739710 | None:intergenic | 50.0% | |
| GACTTAGGGTCCGTTTGGAT+TGG | + | chr8.1:16739335-16739354 | None:intergenic | 50.0% | |
| GAGTTGAAGGAACTCCTCAC+GGG | + | chr8.1:16740531-16740550 | None:intergenic | 50.0% | |
| GGTCCCCTTCCTATCGTATT+TGG | - | chr8.1:16739967-16739986 | MS.gene061717:intron | 50.0% | |
| GTAGTCCGTGCTGCGAAAAA+GGG | - | chr8.1:16739898-16739917 | MS.gene061717:intron | 50.0% | |
| TGGTGCTCTTCTTCCACAAG+AGG | - | chr8.1:16740676-16740695 | MS.gene061717:CDS | 50.0% | |
| ! | ATGTGAGCACTGTTGAGGAG+TGG | - | chr8.1:16738672-16738691 | MS.gene061717:CDS | 50.0% |
| ! | GGAGTATCCTGCTTTAGTCG+CGG | - | chr8.1:16740697-16740716 | MS.gene061717:CDS | 50.0% |
| !! | AGCAAGTTTGTGGAAGTGCC+TGG | - | chr8.1:16740656-16740675 | MS.gene061717:CDS | 50.0% |
| !! | ATGGCTGGTGTCACGTTATC+AGG | + | chr8.1:16740419-16740438 | None:intergenic | 50.0% |
| !! | CCAGGTACTGATAGTAGTGG+AGG | - | chr8.1:16738869-16738888 | MS.gene061717:CDS | 50.0% |
| !! | TCTTGTGGAAGAAGAGCACC+AGG | + | chr8.1:16740677-16740696 | None:intergenic | 50.0% |
| !!! | TGGCAGGGTTTTAGGGCTTT+TGG | - | chr8.1:16739400-16739419 | MS.gene061717:intron | 50.0% |
| AGACCCTGTAACATCCCGTG+AGG | - | chr8.1:16740514-16740533 | MS.gene061717:intron | 55.0% | |
| AGCTCTTCCGCGACTAAAGC+AGG | + | chr8.1:16740707-16740726 | None:intergenic | 55.0% | |
| AGTCCAGTCAAGAAAGCCGC+GGG | + | chr8.1:16740491-16740510 | None:intergenic | 55.0% | |
| CACGGGATGTTACAGGGTCT+AGG | + | chr8.1:16740514-16740533 | None:intergenic | 55.0% | |
| GAGTCCAGTCAAGAAAGCCG+CGG | + | chr8.1:16740492-16740511 | None:intergenic | 55.0% | |
| TACACCATCCACCCAACTGC+AGG | + | chr8.1:16740332-16740351 | None:intergenic | 55.0% | |
| TAGCTGCTGTTGCACCCACT+TGG | - | chr8.1:16739941-16739960 | MS.gene061717:intron | 55.0% | |
| TTACCCGCGGCTTTCTTGAC+TGG | - | chr8.1:16740485-16740504 | MS.gene061717:intron | 55.0% | |
| ! | AGGAGCACGTTACTTACCCG+CGG | - | chr8.1:16740472-16740491 | MS.gene061717:intron | 55.0% |
| !! | ACCTTAAAGGCGCCTGCAGT+TGG | - | chr8.1:16740317-16740336 | MS.gene061717:intron | 55.0% |
| !! | CCAGACCCTTTTTCGCAGCA+CGG | + | chr8.1:16739906-16739925 | None:intergenic | 55.0% |
| !! | CCTTAAAGGCGCCTGCAGTT+GGG | - | chr8.1:16740318-16740337 | MS.gene061717:intron | 55.0% |
| AGGAAGGGGACCAGACCAAG+TGG | + | chr8.1:16739959-16739978 | None:intergenic | 60.0% | |
| CCCAACTGCAGGCGCCTTTA+AGG | + | chr8.1:16740321-16740340 | None:intergenic | 60.0% | |
| CCGTGCTGCGAAAAAGGGTC+TGG | - | chr8.1:16739903-16739922 | MS.gene061717:intron | 60.0% | |
| GCTGTTGCACCCACTTGGTC+TGG | - | chr8.1:16739946-16739965 | MS.gene061717:intron | 60.0% | |
| GGAAGGGGACCAGACCAAGT+GGG | + | chr8.1:16739958-16739977 | None:intergenic | 60.0% | |
| !! | TAAAGGCGCCTGCAGTTGGG+TGG | - | chr8.1:16740321-16740340 | MS.gene061717:intron | 60.0% |
| GGCGCCTGCAGTTGGGTGGA+TGG | - | chr8.1:16740325-16740344 | MS.gene061717:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 16738656 | 16740766 | 16738656 | ID=MS.gene061717 |
| chr8.1 | mRNA | 16738656 | 16740766 | 16738656 | ID=MS.gene061717.t1;Parent=MS.gene061717 |
| chr8.1 | exon | 16740550 | 16740766 | 16740550 | ID=MS.gene061717.t1.exon1;Parent=MS.gene061717.t1 |
| chr8.1 | CDS | 16740550 | 16740766 | 16740550 | ID=cds.MS.gene061717.t1;Parent=MS.gene061717.t1 |
| chr8.1 | exon | 16739409 | 16739568 | 16739409 | ID=MS.gene061717.t1.exon2;Parent=MS.gene061717.t1 |
| chr8.1 | CDS | 16739409 | 16739568 | 16739409 | ID=cds.MS.gene061717.t1;Parent=MS.gene061717.t1 |
| chr8.1 | exon | 16738656 | 16739124 | 16738656 | ID=MS.gene061717.t1.exon3;Parent=MS.gene061717.t1 |
| chr8.1 | CDS | 16738656 | 16739124 | 16738656 | ID=cds.MS.gene061717.t1;Parent=MS.gene061717.t1 |
| Gene Sequence |
| Protein sequence |
