Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055331.t1 | AES60997.1 | 73.6 | 307 | 11 | 1 | 1 | 237 | 1 | 307 | 2.40E-89 | 338.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055331.t1 | Q6NM73 | 66.2 | 148 | 50 | 0 | 25 | 172 | 27 | 174 | 2.4e-53 | 210.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055331.t1 | G7I3U3 | 73.6 | 307 | 11 | 1 | 1 | 237 | 1 | 307 | 1.7e-89 | 338.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049596 | MS.gene055331 | 0.800316 | 1.53E-48 | -1.69E-46 |
| MS.gene050071 | MS.gene055331 | 0.806784 | 6.95E-50 | -1.69E-46 |
| MS.gene051885 | MS.gene055331 | 0.801085 | 1.06E-48 | -1.69E-46 |
| MS.gene054643 | MS.gene055331 | 0.806591 | 7.64E-50 | -1.69E-46 |
| MS.gene055251 | MS.gene055331 | 0.806357 | 8.56E-50 | -1.69E-46 |
| MS.gene055331 | MS.gene060855 | 0.815757 | 7.85E-52 | -1.69E-46 |
| MS.gene055331 | MS.gene061717 | -0.807138 | 5.85E-50 | -1.69E-46 |
| MS.gene055331 | MS.gene061773 | 0.861992 | 6.95E-64 | -1.69E-46 |
| MS.gene055331 | MS.gene061774 | 0.873991 | 9.57E-68 | -1.69E-46 |
| MS.gene055331 | MS.gene061775 | 0.872978 | 2.10E-67 | -1.69E-46 |
| MS.gene055331 | MS.gene063145 | 0.806415 | 8.32E-50 | -1.69E-46 |
| MS.gene055331 | MS.gene066010 | 0.820238 | 7.62E-53 | -1.69E-46 |
| MS.gene055331 | MS.gene066031 | 0.818556 | 1.84E-52 | -1.69E-46 |
| MS.gene055331 | MS.gene066358 | 0.826084 | 3.29E-54 | -1.69E-46 |
| MS.gene055331 | MS.gene067556 | 0.804045 | 2.61E-49 | -1.69E-46 |
| MS.gene055331 | MS.gene072351 | 0.827702 | 1.35E-54 | -1.69E-46 |
| MS.gene055331 | MS.gene072486 | 0.80311 | 4.08E-49 | -1.69E-46 |
| MS.gene055331 | MS.gene072697 | 0.819546 | 1.10E-52 | -1.69E-46 |
| MS.gene055331 | MS.gene074420 | 0.806929 | 6.48E-50 | -1.69E-46 |
| MS.gene055331 | MS.gene09934 | 0.804986 | 1.66E-49 | -1.69E-46 |
| MS.gene055331 | MS.gene22553 | 0.80893 | 2.43E-50 | -1.69E-46 |
| MS.gene055331 | MS.gene24699 | 0.803629 | 3.18E-49 | -1.69E-46 |
| MS.gene055331 | MS.gene26387 | 0.825766 | 3.92E-54 | -1.69E-46 |
| MS.gene055331 | MS.gene26849 | 0.808126 | 3.61E-50 | -1.69E-46 |
| MS.gene055331 | MS.gene26855 | 0.81689 | 4.38E-52 | -1.69E-46 |
| MS.gene055331 | MS.gene27047 | 0.812545 | 4.02E-51 | -1.69E-46 |
| MS.gene055331 | MS.gene28079 | 0.852235 | 5.27E-61 | -1.69E-46 |
| MS.gene055331 | MS.gene28813 | 0.844637 | 6.68E-59 | -1.69E-46 |
| MS.gene055331 | MS.gene32106 | 0.809397 | 1.93E-50 | -1.69E-46 |
| MS.gene055331 | MS.gene32853 | 0.810237 | 1.27E-50 | -1.69E-46 |
| MS.gene055331 | MS.gene37459 | 0.812492 | 4.13E-51 | -1.69E-46 |
| MS.gene055331 | MS.gene38118 | 0.829511 | 4.94E-55 | -1.69E-46 |
| MS.gene055331 | MS.gene38829 | 0.811364 | 7.27E-51 | -1.69E-46 |
| MS.gene055331 | MS.gene38942 | 0.80936 | 1.97E-50 | -1.69E-46 |
| MS.gene055331 | MS.gene39052 | 0.810001 | 1.43E-50 | -1.69E-46 |
| MS.gene055331 | MS.gene40035 | 0.891492 | 3.78E-74 | -1.69E-46 |
| MS.gene055331 | MS.gene42203 | 0.81958 | 1.08E-52 | -1.69E-46 |
| MS.gene055331 | MS.gene42398 | 0.816426 | 5.56E-52 | -1.69E-46 |
| MS.gene055331 | MS.gene44024 | 0.841229 | 5.39E-58 | -1.69E-46 |
| MS.gene055331 | MS.gene47280 | 0.834697 | 2.58E-56 | -1.69E-46 |
| MS.gene055331 | MS.gene52975 | 0.838725 | 2.42E-57 | -1.69E-46 |
| MS.gene055331 | MS.gene52996 | 0.836644 | 8.29E-57 | -1.69E-46 |
| MS.gene055331 | MS.gene57288 | 0.813819 | 2.11E-51 | -1.69E-46 |
| MS.gene055331 | MS.gene57289 | 0.868971 | 4.39E-66 | -1.69E-46 |
| MS.gene055331 | MS.gene58096 | 0.872986 | 2.08E-67 | -1.69E-46 |
| MS.gene055331 | MS.gene58836 | 0.809675 | 1.68E-50 | -1.69E-46 |
| MS.gene055331 | MS.gene61947 | 0.806509 | 7.95E-50 | -1.69E-46 |
| MS.gene055331 | MS.gene62896 | 0.814859 | 1.24E-51 | -1.69E-46 |
| MS.gene055331 | MS.gene64077 | 0.804244 | 2.37E-49 | -1.69E-46 |
| MS.gene055331 | MS.gene65433 | 0.809551 | 1.79E-50 | -1.69E-46 |
| MS.gene055331 | MS.gene66156 | 0.812612 | 3.88E-51 | -1.69E-46 |
| MS.gene055331 | MS.gene66159 | 0.828475 | 8.81E-55 | -1.69E-46 |
| MS.gene055331 | MS.gene67231 | 0.837025 | 6.63E-57 | -1.69E-46 |
| MS.gene055331 | MS.gene68060 | 0.832254 | 1.05E-55 | -1.69E-46 |
| MS.gene055331 | MS.gene68200 | 0.814014 | 1.91E-51 | -1.69E-46 |
| MS.gene055331 | MS.gene68420 | 0.807443 | 5.04E-50 | -1.69E-46 |
| MS.gene055331 | MS.gene68793 | 0.812464 | 4.18E-51 | -1.69E-46 |
| MS.gene055331 | MS.gene69919 | 0.814971 | 1.17E-51 | -1.69E-46 |
| MS.gene055331 | MS.gene70240 | 0.875652 | 2.60E-68 | -1.69E-46 |
| MS.gene055331 | MS.gene70561 | 0.805837 | 1.10E-49 | -1.69E-46 |
| MS.gene055331 | MS.gene70804 | 0.874108 | 8.74E-68 | -1.69E-46 |
| MS.gene055331 | MS.gene70896 | 0.808496 | 3.01E-50 | -1.69E-46 |
| MS.gene055331 | MS.gene70898 | 0.82957 | 4.78E-55 | -1.69E-46 |
| MS.gene055331 | MS.gene71419 | 0.816392 | 5.66E-52 | -1.69E-46 |
| MS.gene055331 | MS.gene71941 | 0.817813 | 2.71E-52 | -1.69E-46 |
| MS.gene055331 | MS.gene74966 | 0.813806 | 2.12E-51 | -1.69E-46 |
| MS.gene055331 | MS.gene83234 | 0.838385 | 2.97E-57 | -1.69E-46 |
| MS.gene055331 | MS.gene89100 | 0.81141 | 7.10E-51 | -1.69E-46 |
| MS.gene055331 | MS.gene90636 | 0.81916 | 1.34E-52 | -1.69E-46 |
| MS.gene055331 | MS.gene91078 | 0.820952 | 5.22E-53 | -1.69E-46 |
| MS.gene055331 | MS.gene91400 | 0.817389 | 3.38E-52 | -1.69E-46 |
| MS.gene055331 | MS.gene96051 | 0.816869 | 4.43E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055331.t1 | MTR_1g073320 | 100.000 | 172 | 0 | 0 | 1 | 172 | 1 | 172 | 1.31e-122 | 352 |
| MS.gene055331.t1 | MTR_1g073320 | 49.045 | 157 | 41 | 3 | 87 | 240 | 191 | 311 | 3.20e-19 | 85.5 |
| MS.gene055331.t1 | MTR_1g044580 | 52.397 | 292 | 73 | 5 | 1 | 228 | 1 | 290 | 3.15e-80 | 254 |
| MS.gene055331.t1 | MTR_7g098410 | 45.408 | 196 | 96 | 4 | 11 | 200 | 10 | 200 | 2.49e-46 | 155 |
| MS.gene055331.t1 | MTR_1g080350 | 40.351 | 171 | 90 | 6 | 12 | 172 | 10 | 178 | 5.14e-32 | 119 |
| MS.gene055331.t1 | MTR_5g078030 | 35.915 | 142 | 88 | 2 | 9 | 148 | 4 | 144 | 1.78e-21 | 90.5 |
| MS.gene055331.t1 | MTR_3g065370 | 31.724 | 145 | 90 | 3 | 6 | 148 | 5 | 142 | 1.86e-17 | 79.7 |
| MS.gene055331.t1 | MTR_8g104990 | 27.815 | 151 | 106 | 2 | 26 | 174 | 18 | 167 | 3.63e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055331.t1 | AT1G04520 | 62.500 | 184 | 65 | 1 | 8 | 191 | 10 | 189 | 2.69e-74 | 228 |
| MS.gene055331.t1 | AT1G04520 | 29.949 | 197 | 99 | 5 | 33 | 227 | 144 | 303 | 1.40e-12 | 66.2 |
| MS.gene055331.t1 | AT2G33330 | 62.778 | 180 | 62 | 3 | 1 | 175 | 1 | 180 | 7.87e-73 | 224 |
| MS.gene055331.t1 | AT2G33330 | 30.612 | 196 | 94 | 4 | 33 | 227 | 146 | 300 | 1.41e-11 | 63.5 |
| MS.gene055331.t1 | AT5G43980 | 47.097 | 155 | 75 | 2 | 25 | 172 | 20 | 174 | 2.91e-38 | 135 |
| MS.gene055331.t1 | AT3G04370 | 33.880 | 183 | 90 | 7 | 24 | 175 | 25 | 207 | 3.12e-22 | 93.6 |
| MS.gene055331.t1 | AT3G04370 | 31.868 | 182 | 94 | 5 | 24 | 175 | 25 | 206 | 4.63e-22 | 92.8 |
| MS.gene055331.t1 | AT5G37660 | 31.522 | 184 | 122 | 3 | 11 | 192 | 15 | 196 | 6.92e-22 | 92.0 |
| MS.gene055331.t1 | AT5G37660 | 31.522 | 184 | 122 | 3 | 11 | 192 | 15 | 196 | 6.98e-22 | 92.0 |
| MS.gene055331.t1 | AT3G60720 | 25.794 | 252 | 127 | 5 | 34 | 226 | 30 | 280 | 6.01e-17 | 78.6 |
| MS.gene055331.t1 | AT3G60720 | 25.498 | 251 | 127 | 5 | 33 | 224 | 29 | 278 | 6.13e-16 | 75.5 |
| MS.gene055331.t1 | AT3G60720 | 26.570 | 207 | 130 | 6 | 33 | 221 | 29 | 231 | 6.51e-15 | 72.4 |
| MS.gene055331.t1 | AT1G70690 | 32.168 | 143 | 91 | 4 | 10 | 148 | 9 | 149 | 8.81e-15 | 72.4 |
| MS.gene055331.t1 | AT2G01660 | 30.978 | 184 | 110 | 6 | 26 | 201 | 20 | 194 | 1.03e-13 | 68.9 |
| MS.gene055331.t1 | AT2G01660 | 30.978 | 184 | 110 | 6 | 26 | 201 | 20 | 194 | 1.78e-13 | 68.9 |
| MS.gene055331.t1 | AT2G01660 | 30.978 | 184 | 110 | 6 | 26 | 201 | 20 | 194 | 1.96e-13 | 68.6 |
Find 40 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGCAAGAGTTCAGCTTTC+AGG | 0.163538 | 1.3:-52809333 | MS.gene055331:CDS |
| TGAAGAACAAAAGAAGAAAA+AGG | 0.259401 | 1.3:+52809661 | None:intergenic |
| TCTGGTTACTCTTCATCTTT+TGG | 0.262866 | 1.3:-52808919 | MS.gene055331:CDS |
| AAGACTGTGGCAATAATATT+AGG | 0.324267 | 1.3:-52808410 | MS.gene055331:CDS |
| AGATACCTGTGATGCTGTTT+TGG | 0.333639 | 1.3:+52809448 | None:intergenic |
| GGTGGTGGATCATCCTCTTC+TGG | 0.358061 | 1.3:-52808937 | MS.gene055331:CDS |
| TAGACCAAAGTTGTGTAATC+AGG | 0.371990 | 1.3:+52809600 | None:intergenic |
| AAGATGATGATTTAGAGAAA+TGG | 0.375671 | 1.3:+52809625 | None:intergenic |
| GATTGTGAATATGCTCCATT+TGG | 0.394933 | 1.3:+52809546 | None:intergenic |
| AGATGATGATTTAGAGAAAT+GGG | 0.405156 | 1.3:+52809626 | None:intergenic |
| AAGGGTGGTCACTCTTCATC+TGG | 0.416746 | 1.3:-52808958 | MS.gene055331:CDS |
| TTCTCCTGATTACACAACTT+TGG | 0.429549 | 1.3:-52809604 | MS.gene055331:CDS |
| AGGTTCTTCAAAACAACAAC+TGG | 0.461798 | 1.3:-52809477 | MS.gene055331:CDS |
| GGTAGGTGTTGTGTTGTACA+TGG | 0.467781 | 1.3:-52808317 | MS.gene055331:CDS |
| ACAACAAATGCTGCTGGAAG+AGG | 0.468669 | 1.3:-52809237 | MS.gene055331:CDS |
| TACATGCTGTACGAGGTTGC+TGG | 0.468867 | 1.3:-52809306 | MS.gene055331:CDS |
| AAGCTGAACTCTTGCAGAGA+TGG | 0.484956 | 1.3:+52809338 | None:intergenic |
| CAGATTCTCTTCAAGACTTG+TGG | 0.485266 | 1.3:-52809261 | MS.gene055331:CDS |
| GGTCACTCTTCATCTGGTGG+TGG | 0.489663 | 1.3:-52808952 | MS.gene055331:CDS |
| TTCAAAACAACAACTGGTAA+TGG | 0.498720 | 1.3:-52809471 | MS.gene055331:CDS |
| CATAGTTTGTCTGAGAGAAC+TGG | 0.504524 | 1.3:+52809369 | None:intergenic |
| GAAACATTCACAGATCCAAA+TGG | 0.507372 | 1.3:-52809561 | MS.gene055331:CDS |
| TGTGGAACAACAAATGCTGC+TGG | 0.508236 | 1.3:-52809243 | MS.gene055331:CDS |
| TTGTGAGATCTCCTCTGCAT+TGG | 0.514398 | 1.3:+52809424 | None:intergenic |
| AATGGCCAAAACAGCATCAC+AGG | 0.526879 | 1.3:-52809453 | MS.gene055331:CDS |
| GCTATGACAGGACAAAATAC+AGG | 0.532912 | 1.3:-52808434 | MS.gene055331:intron |
| ATCTGCATCCCTGAAACTTG+TGG | 0.533086 | 1.3:+52809279 | None:intergenic |
| TTATATGCTTGCTATTTGCA+AGG | 0.544026 | 1.3:-52808361 | MS.gene055331:CDS |
| AGATGAAGAGTAACCAGAAG+AGG | 0.557396 | 1.3:+52808924 | None:intergenic |
| TACACAACTTTGGTCTACAA+AGG | 0.569043 | 1.3:-52809594 | MS.gene055331:CDS |
| GGTGGTCACTCTTCATCTGG+TGG | 0.573580 | 1.3:-52808955 | MS.gene055331:CDS |
| CAACAAATGCTGCTGGAAGA+GGG | 0.576463 | 1.3:-52809236 | MS.gene055331:CDS |
| ATTAGGAGGTATAGCTGCTG+TGG | 0.619016 | 1.3:-52808393 | MS.gene055331:CDS |
| ACAGGTATCTTCCAATGCAG+AGG | 0.638244 | 1.3:-52809435 | MS.gene055331:CDS |
| ACTGTGGCAATAATATTAGG+AGG | 0.641949 | 1.3:-52808407 | MS.gene055331:CDS |
| TGATGAAGAAACGTGATGGT+AGG | 0.645756 | 1.3:-52808334 | MS.gene055331:CDS |
| AGGTTGTTACATGCTGTACG+AGG | 0.659964 | 1.3:-52809313 | MS.gene055331:CDS |
| AATTTGATGAAGAAACGTGA+TGG | 0.662013 | 1.3:-52808338 | MS.gene055331:CDS |
| GTTCTCTCAGACAAACTATG+TGG | 0.679766 | 1.3:-52809366 | MS.gene055331:CDS |
| ACAAAATACAGGAAAGACTG+TGG | 0.709113 | 1.3:-52808423 | MS.gene055331:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTTCATACATATTAGTAAA+TGG | + | chr1.3:52809489-52809508 | None:intergenic | 20.0% |
| !! | TTATAACACATGAACAATTA+AGG | + | chr1.3:52809435-52809454 | None:intergenic | 20.0% |
| !!! | AGTTTTAGTTATTATCCTAA+TGG | - | chr1.3:52808991-52809010 | MS.gene055331:intron | 20.0% |
| !!! | CAATTTTCTCAAATTATGAT+CGG | + | chr1.3:52809248-52809267 | None:intergenic | 20.0% |
| !!! | GTTTTAGTTATTATCCTAAT+GGG | - | chr1.3:52808992-52809011 | MS.gene055331:intron | 20.0% |
| !!! | TTTTACTTTTATGTTGAATC+TGG | - | chr1.3:52809166-52809185 | MS.gene055331:intron | 20.0% |
| !!! | TTTTAGTTATTATCCTAATG+GGG | - | chr1.3:52808993-52809012 | MS.gene055331:intron | 20.0% |
| ! | AAGAACAAAAGAAGAAAAAG+GGG | + | chr1.3:52808319-52808338 | None:intergenic | 25.0% |
| ! | AAGATGATGATTTAGAGAAA+TGG | + | chr1.3:52808357-52808376 | None:intergenic | 25.0% |
| ! | AGATGATGATTTAGAGAAAT+GGG | + | chr1.3:52808356-52808375 | None:intergenic | 25.0% |
| ! | GAAGAACAAAAGAAGAAAAA+GGG | + | chr1.3:52808320-52808339 | None:intergenic | 25.0% |
| ! | TCAGAATCAATAGATAAGAT+TGG | - | chr1.3:52809107-52809126 | MS.gene055331:intron | 25.0% |
| ! | TGAAGAACAAAAGAAGAAAA+AGG | + | chr1.3:52808321-52808340 | None:intergenic | 25.0% |
| ! | TTTGAGAAAATTGAATCGAA+TGG | - | chr1.3:52809255-52809274 | MS.gene055331:CDS | 25.0% |
| !!! | ATAAGATTGGTTTCAATTCT+GGG | - | chr1.3:52809120-52809139 | MS.gene055331:intron | 25.0% |
| !!! | TATCTATTGATTCTGAATGA+TGG | + | chr1.3:52809103-52809122 | None:intergenic | 25.0% |
| !!! | TTGTACATGGTTTTACTATA+TGG | - | chr1.3:52809675-52809694 | MS.gene055331:CDS | 25.0% |
| AAGACTGTGGCAATAATATT+AGG | - | chr1.3:52809569-52809588 | MS.gene055331:CDS | 30.0% | |
| AATTTGATGAAGAAACGTGA+TGG | - | chr1.3:52809641-52809660 | MS.gene055331:CDS | 30.0% | |
| TTCAAAACAACAACTGGTAA+TGG | - | chr1.3:52808508-52808527 | MS.gene055331:intron | 30.0% | |
| TTTCACAATCCACAAAAACA+AGG | - | chr1.3:52808482-52808501 | MS.gene055331:intron | 30.0% | |
| ! | ATTAATCATTGAGTTGTGTG+TGG | - | chr1.3:52809513-52809532 | MS.gene055331:CDS | 30.0% |
| ! | TATCAAGCTTTGTATGTGAT+GGG | - | chr1.3:52808844-52808863 | MS.gene055331:intron | 30.0% |
| ! | TTATCAAGCTTTGTATGTGA+TGG | - | chr1.3:52808843-52808862 | MS.gene055331:intron | 30.0% |
| !! | GATAAGATTGGTTTCAATTC+TGG | - | chr1.3:52809119-52809138 | MS.gene055331:intron | 30.0% |
| !! | TTATATGCTTGCTATTTGCA+AGG | - | chr1.3:52809618-52809637 | MS.gene055331:CDS | 30.0% |
| !! | TTTTGTGGATTGTGAAACTA+AGG | + | chr1.3:52808479-52808498 | None:intergenic | 30.0% |
| !!! | AGAAGAAAAAGGGGTTTTTT+TGG | + | chr1.3:52808310-52808329 | None:intergenic | 30.0% |
| !!! | TTTGAAGAACCTTGTTTTTG+TGG | + | chr1.3:52808494-52808513 | None:intergenic | 30.0% |
| ACAAAATACAGGAAAGACTG+TGG | - | chr1.3:52809556-52809575 | MS.gene055331:CDS | 35.0% | |
| ACCTTAACACTTCAGATTGA+AGG | + | chr1.3:52809361-52809380 | None:intergenic | 35.0% | |
| ACTGTGGCAATAATATTAGG+AGG | - | chr1.3:52809572-52809591 | MS.gene055331:CDS | 35.0% | |
| AGGTTCTTCAAAACAACAAC+TGG | - | chr1.3:52808502-52808521 | MS.gene055331:intron | 35.0% | |
| GAAACATTCACAGATCCAAA+TGG | - | chr1.3:52808418-52808437 | MS.gene055331:CDS | 35.0% | |
| GAAGTAGCTCAATTTAGCAA+TGG | - | chr1.3:52809399-52809418 | MS.gene055331:CDS | 35.0% | |
| GAATGTGGAAGTTCTATTTC+AGG | - | chr1.3:52808940-52808959 | MS.gene055331:CDS | 35.0% | |
| GATTGTGAATATGCTCCATT+TGG | + | chr1.3:52808436-52808455 | None:intergenic | 35.0% | |
| TACACAACTTTGGTCTACAA+AGG | - | chr1.3:52808385-52808404 | MS.gene055331:CDS | 35.0% | |
| TAGACCAAAGTTGTGTAATC+AGG | + | chr1.3:52808382-52808401 | None:intergenic | 35.0% | |
| TTCTCCTGATTACACAACTT+TGG | - | chr1.3:52808375-52808394 | MS.gene055331:CDS | 35.0% | |
| ! | ACCTTCAATCTGAAGTGTTA+AGG | - | chr1.3:52809357-52809376 | MS.gene055331:CDS | 35.0% |
| ! | CAATCTCTTTCAGCACTTTT+TGG | - | chr1.3:52808451-52808470 | MS.gene055331:intron | 35.0% |
| ! | TCTGGTTACTCTTCATCTTT+TGG | - | chr1.3:52809060-52809079 | MS.gene055331:intron | 35.0% |
| !! | AATGGTGTTGTGAGTAATCA+TGG | - | chr1.3:52808805-52808824 | MS.gene055331:intron | 35.0% |
| !! | ATCGGTGTCAATGTTATGTT+AGG | + | chr1.3:52809230-52809249 | None:intergenic | 35.0% |
| !! | GCTTTTTCTGTGATGGAAAA+TGG | - | chr1.3:52808787-52808806 | MS.gene055331:intron | 35.0% |
| AGATGAAGAGTAACCAGAAG+AGG | + | chr1.3:52809058-52809077 | None:intergenic | 40.0% | |
| CAGATTCTCTTCAAGACTTG+TGG | - | chr1.3:52808718-52808737 | MS.gene055331:intron | 40.0% | |
| GCTATGACAGGACAAAATAC+AGG | - | chr1.3:52809545-52809564 | MS.gene055331:CDS | 40.0% | |
| GTTCTCTCAGACAAACTATG+TGG | - | chr1.3:52808613-52808632 | MS.gene055331:intron | 40.0% | |
| TATCCTAATGGGGTTCCAAA+GGG | - | chr1.3:52809003-52809022 | MS.gene055331:intron | 40.0% | |
| TGATGAAGAAACGTGATGGT+AGG | - | chr1.3:52809645-52809664 | MS.gene055331:CDS | 40.0% | |
| TGGCTAAATGATGCTATGAC+AGG | - | chr1.3:52809533-52809552 | MS.gene055331:CDS | 40.0% | |
| TTATCCTAATGGGGTTCCAA+AGG | - | chr1.3:52809002-52809021 | MS.gene055331:intron | 40.0% | |
| ! | CATAGTTTGTCTGAGAGAAC+TGG | + | chr1.3:52808613-52808632 | None:intergenic | 40.0% |
| ! | CTTCAGATTGAAGGTGTGTT+CGG | + | chr1.3:52809352-52809371 | None:intergenic | 40.0% |
| ! | GGTTACTCTTCATCTTTTGG+CGG | - | chr1.3:52809063-52809082 | MS.gene055331:intron | 40.0% |
| ! | GTCAAGTTGTTGTGTTGTGT+AGG | - | chr1.3:52809294-52809313 | MS.gene055331:CDS | 40.0% |
| !! | AGATACCTGTGATGCTGTTT+TGG | + | chr1.3:52808534-52808553 | None:intergenic | 40.0% |
| !! | CTGGTTTTCCACAAGTTTCA+GGG | - | chr1.3:52808692-52808711 | MS.gene055331:intron | 40.0% |
| !! | GATGTTGGTGATTCTGATTG+TGG | - | chr1.3:52808880-52808899 | MS.gene055331:intron | 40.0% |
| !!! | AGACACTGCTTTTTCTGTGA+TGG | - | chr1.3:52808780-52808799 | MS.gene055331:intron | 40.0% |
| AAGCTGAACTCTTGCAGAGA+TGG | + | chr1.3:52808644-52808663 | None:intergenic | 45.0% | |
| AATGGCCAAAACAGCATCAC+AGG | - | chr1.3:52808526-52808545 | MS.gene055331:intron | 45.0% | |
| ACAACAAATGCTGCTGGAAG+AGG | - | chr1.3:52808742-52808761 | MS.gene055331:intron | 45.0% | |
| ACAGGTATCTTCCAATGCAG+AGG | - | chr1.3:52808544-52808563 | MS.gene055331:intron | 45.0% | |
| AGGTTGTTACATGCTGTACG+AGG | - | chr1.3:52808666-52808685 | MS.gene055331:intron | 45.0% | |
| ATCTGCATCCCTGAAACTTG+TGG | + | chr1.3:52808703-52808722 | None:intergenic | 45.0% | |
| CAAAGAGCTCAAGTCGAATG+TGG | - | chr1.3:52808925-52808944 | MS.gene055331:CDS | 45.0% | |
| CAACAAATGCTGCTGGAAGA+GGG | - | chr1.3:52808743-52808762 | MS.gene055331:intron | 45.0% | |
| CAACTTGACAGTGATGCATG+TGG | + | chr1.3:52809283-52809302 | None:intergenic | 45.0% | |
| TCTGCAAGAGTTCAGCTTTC+AGG | - | chr1.3:52808646-52808665 | MS.gene055331:intron | 45.0% | |
| TGTGGAACAACAAATGCTGC+TGG | - | chr1.3:52808736-52808755 | MS.gene055331:intron | 45.0% | |
| TTGTGAGATCTCCTCTGCAT+TGG | + | chr1.3:52808558-52808577 | None:intergenic | 45.0% | |
| ! | ATTAGGAGGTATAGCTGCTG+TGG | - | chr1.3:52809586-52809605 | MS.gene055331:CDS | 45.0% |
| ! | GGTAGGTGTTGTGTTGTACA+TGG | - | chr1.3:52809662-52809681 | MS.gene055331:CDS | 45.0% |
| ! | TATAGCTGCTGTGGCGTTTT+TGG | - | chr1.3:52809595-52809614 | MS.gene055331:CDS | 45.0% |
| !! | TATGTGATGGGTCAGTGTGA+GGG | - | chr1.3:52808856-52808875 | MS.gene055331:intron | 45.0% |
| !!! | GCTGGTTTTCCACAAGTTTC+AGG | - | chr1.3:52808691-52808710 | MS.gene055331:intron | 45.0% |
| AAGGGTGGTCACTCTTCATC+TGG | - | chr1.3:52809021-52809040 | MS.gene055331:intron | 50.0% | |
| GATGAAGAGTGACCACCCTT+TGG | + | chr1.3:52809021-52809040 | None:intergenic | 50.0% | |
| TACATGCTGTACGAGGTTGC+TGG | - | chr1.3:52808673-52808692 | MS.gene055331:intron | 50.0% | |
| TGCATGTATCCGACATGCGT+TGG | + | chr1.3:52809329-52809348 | None:intergenic | 50.0% | |
| TGTCTGACACCAACGCATGT+CGG | - | chr1.3:52809317-52809336 | MS.gene055331:CDS | 50.0% | |
| !! | GTATGTGATGGGTCAGTGTG+AGG | - | chr1.3:52808855-52808874 | MS.gene055331:intron | 50.0% |
| CCTAATGGGGTTCCAAAGGG+TGG | - | chr1.3:52809006-52809025 | MS.gene055331:intron | 55.0% | |
| GGTCACTCTTCATCTGGTGG+TGG | - | chr1.3:52809027-52809046 | MS.gene055331:intron | 55.0% | |
| GGTCAGTGTGAGGGTGATGT+TGG | - | chr1.3:52808865-52808884 | MS.gene055331:intron | 55.0% | |
| GGTGGTCACTCTTCATCTGG+TGG | - | chr1.3:52809024-52809043 | MS.gene055331:intron | 55.0% | |
| !! | CCACCCTTTGGAACCCCATT+AGG | + | chr1.3:52809009-52809028 | None:intergenic | 55.0% |
| !! | GGTGGTGGATCATCCTCTTC+TGG | - | chr1.3:52809042-52809061 | MS.gene055331:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 52808298 | 52809703 | 52808298 | ID=MS.gene055331 |
| chr1.3 | mRNA | 52808298 | 52809703 | 52808298 | ID=MS.gene055331.t1;Parent=MS.gene055331 |
| chr1.3 | exon | 52809188 | 52809703 | 52809188 | ID=MS.gene055331.t1.exon1;Parent=MS.gene055331.t1 |
| chr1.3 | CDS | 52809188 | 52809703 | 52809188 | ID=cds.MS.gene055331.t1;Parent=MS.gene055331.t1 |
| chr1.3 | exon | 52808917 | 52808977 | 52808917 | ID=MS.gene055331.t1.exon2;Parent=MS.gene055331.t1 |
| chr1.3 | CDS | 52808917 | 52808977 | 52808917 | ID=cds.MS.gene055331.t1;Parent=MS.gene055331.t1 |
| chr1.3 | exon | 52808298 | 52808446 | 52808298 | ID=MS.gene055331.t1.exon3;Parent=MS.gene055331.t1 |
| chr1.3 | CDS | 52808298 | 52808446 | 52808298 | ID=cds.MS.gene055331.t1;Parent=MS.gene055331.t1 |
| Gene Sequence |
| Protein sequence |
