Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061859.t1 | XP_003625469.2 | 97.9 | 1285 | 25 | 1 | 1 | 1283 | 112 | 1396 | 0.00E+00 | 2276.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061859.t1 | Q8RWY6 | 70.3 | 1286 | 369 | 10 | 1 | 1283 | 112 | 1387 | 0.0e+00 | 1623.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061859.t1 | G7KZK2 | 97.9 | 1285 | 25 | 1 | 1 | 1283 | 112 | 1396 | 0.0e+00 | 2276.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050786 | MS.gene061859 | 0.82926 | 5.68E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061859.t1 | MTR_7g099480 | 98.833 | 1285 | 13 | 1 | 1 | 1283 | 112 | 1396 | 0.0 | 2612 |
| MS.gene061859.t1 | MTR_7g099480 | 97.821 | 1285 | 13 | 2 | 1 | 1283 | 112 | 1383 | 0.0 | 2577 |
| MS.gene061859.t1 | MTR_1g069165 | 79.611 | 1285 | 250 | 6 | 1 | 1283 | 112 | 1386 | 0.0 | 2062 |
| MS.gene061859.t1 | MTR_1g069095 | 81.159 | 69 | 13 | 0 | 452 | 520 | 17 | 85 | 1.01e-27 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061859.t1 | AT2G20190 | 71.540 | 1286 | 353 | 10 | 1 | 1283 | 112 | 1387 | 0.0 | 1798 |
Find 280 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCCAATGGGTCAAAATTT+TGG | 0.135895 | 7.4:-10905571 | MS.gene061859:CDS |
| ATTCATTGCATGTTTGTTAA+AGG | 0.188353 | 7.4:+10906152 | None:intergenic |
| CTAAAGTTTCCTTCTCTATA+AGG | 0.193679 | 7.4:+10906771 | None:intergenic |
| GAGCAGCCTGTGCAACTTTA+TGG | 0.200058 | 7.4:+10906424 | None:intergenic |
| GACTGAATATGCAAGATCTT+TGG | 0.219724 | 7.4:+10905594 | None:intergenic |
| CAGGTTCTGACTGGTCTTCC+AGG | 0.245900 | 7.4:-10906566 | MS.gene061859:CDS |
| TCTGACAATTGTGTGCTTAA+AGG | 0.255183 | 7.4:+10909602 | None:intergenic |
| GGCCTCCCTTGAAGAACTTT+TGG | 0.266142 | 7.4:+10911823 | None:intergenic |
| TAGAGTCAGTCTCAAGATTA+TGG | 0.283203 | 7.4:+10905641 | None:intergenic |
| CTTATAGAGAAGGAAACTTT+AGG | 0.288125 | 7.4:-10906770 | MS.gene061859:CDS |
| TGATGACTTGGCAGAATCTT+TGG | 0.288941 | 7.4:+10906953 | None:intergenic |
| GTGCATCTGGCCAATGTTCT+AGG | 0.295028 | 7.4:+10908766 | None:intergenic |
| AGAATTGAAGGTCTTGTTCT+AGG | 0.299793 | 7.4:-10910874 | MS.gene061859:CDS |
| ACTAGTGGCCTCTGAAAATT+AGG | 0.300651 | 7.4:+10906726 | None:intergenic |
| TCAGCCGAACGATGTATTTC+TGG | 0.302985 | 7.4:+10908744 | None:intergenic |
| GTGACCCAAATCTTTCTGTT+AGG | 0.303689 | 7.4:-10912928 | MS.gene061859:CDS |
| CAACGAGTGAAGATAGTTAA+AGG | 0.306671 | 7.4:+10906536 | None:intergenic |
| GCTTCCCTAACAGAAAGATT+TGG | 0.308658 | 7.4:+10912923 | None:intergenic |
| GCTCTTTCAACAATTATTGT+AGG | 0.311129 | 7.4:+10913193 | None:intergenic |
| GCAGTCTGTTTACTTGAAAC+AGG | 0.314143 | 7.4:+10904631 | None:intergenic |
| CCATCTGAAGAGCGAACTTT+TGG | 0.316012 | 7.4:+10911917 | None:intergenic |
| TAAAGTTTCCTTCTCTATAA+GGG | 0.318163 | 7.4:+10906772 | None:intergenic |
| GTGCATACCCGTTGGATAAC+AGG | 0.323270 | 7.4:+10907723 | None:intergenic |
| ATCTCTCCGGTCATCAAGTT+TGG | 0.330267 | 7.4:-10907297 | MS.gene061859:CDS |
| GCTATTGAAAGCATGCTTAG+AGG | 0.330768 | 7.4:-10907350 | MS.gene061859:CDS |
| TTATAGAGAAGGAAACTTTA+GGG | 0.331653 | 7.4:-10906769 | MS.gene061859:CDS |
| ACTGAATATGCAAGATCTTT+GGG | 0.337991 | 7.4:+10905595 | None:intergenic |
| CTACAATCTTCCTTCATCTA+TGG | 0.339295 | 7.4:-10912150 | MS.gene061859:intron |
| ATCACGGCCAATTTAGCCTT+TGG | 0.340189 | 7.4:+10906192 | None:intergenic |
| GTGTTGTGAGTATGCTCTTT+TGG | 0.342851 | 7.4:-10908790 | MS.gene061859:CDS |
| AAGGTCCGCCAAGTTGCTTC+AGG | 0.344427 | 7.4:+10909621 | None:intergenic |
| TTATCAGAGTATATCTTGAT+AGG | 0.345322 | 7.4:+10910979 | None:intergenic |
| ATTCCAAGTGGTTATATTAC+CGG | 0.355163 | 7.4:-10911893 | MS.gene061859:CDS |
| ACAACAGAGCCTACTGCTTA+TGG | 0.356181 | 7.4:-10907044 | MS.gene061859:CDS |
| TCGTCTAATCCACCTGGTTA+TGG | 0.356888 | 7.4:-10907527 | MS.gene061859:CDS |
| CCTCTTTAGGATCAATTAAC+CGG | 0.360255 | 7.4:+10906319 | None:intergenic |
| GCAGAAGGTGCTGCTAATAT+TGG | 0.363729 | 7.4:-10906129 | MS.gene061859:CDS |
| CGATGTATTTCTGGTGCATC+TGG | 0.364125 | 7.4:+10908753 | None:intergenic |
| GATATTAATGCCAGGCTAGA+AGG | 0.365688 | 7.4:-10911947 | MS.gene061859:CDS |
| GCTTGCTAAGTTAACCCCTT+TGG | 0.366050 | 7.4:-10906091 | MS.gene061859:CDS |
| CAGGGTCAAAGGATGAAAAT+AGG | 0.367173 | 7.4:+10907742 | None:intergenic |
| TCATTACCTTGGAAGATATT+CGG | 0.368322 | 7.4:-10905782 | MS.gene061859:CDS |
| CAACACTGATAAGCAGTATC+TGG | 0.371758 | 7.4:-10906799 | MS.gene061859:CDS |
| AAGGTCTCCAAAGGCTAAAT+TGG | 0.372750 | 7.4:-10906199 | MS.gene061859:CDS |
| TCCTGCCACCATCACTATCT+AGG | 0.373670 | 7.4:+10905752 | None:intergenic |
| GACGGTTGTGCTTGAGGTGC+TGG | 0.374712 | 7.4:-10902062 | MS.gene061859:CDS |
| CAGCTTGGGCGCACAAAAGC+TGG | 0.376157 | 7.4:-10913162 | MS.gene061859:CDS |
| CAACAAATGACCAGTCTGTT+TGG | 0.378186 | 7.4:-10904582 | MS.gene061859:CDS |
| ACTGCTTATGGTGTCTATAA+AGG | 0.379001 | 7.4:-10907032 | MS.gene061859:CDS |
| CATCCTCATATTCAACTAGA+AGG | 0.381322 | 7.4:-10906899 | MS.gene061859:CDS |
| TTGATCCTAAAGAGGTTGTT+AGG | 0.381649 | 7.4:-10906311 | MS.gene061859:CDS |
| CTTCCCTAACAGAAAGATTT+GGG | 0.383653 | 7.4:+10912924 | None:intergenic |
| TAAGGGTACAGAACGTAGTT+TGG | 0.383982 | 7.4:-10907408 | MS.gene061859:CDS |
| TATGATCCATCTGATGTTGT+AGG | 0.388722 | 7.4:-10905847 | MS.gene061859:CDS |
| ACTCCTCGTTTAGATGTTAA+CGG | 0.390252 | 7.4:-10905490 | MS.gene061859:CDS |
| CAAAGAACTTCCTTCTGCAT+TGG | 0.391885 | 7.4:-10905419 | MS.gene061859:CDS |
| CATTCCTCAAATTCTTCATA+TGG | 0.395024 | 7.4:-10905335 | MS.gene061859:intron |
| TCAGGTTATTGTCCCTCTAC+TGG | 0.398103 | 7.4:-10901464 | MS.gene061859:intron |
| TGACCCAAATCTTTCTGTTA+GGG | 0.402443 | 7.4:-10912927 | MS.gene061859:CDS |
| AATATGTCTGATAAGCATAA+TGG | 0.403866 | 7.4:-10907323 | MS.gene061859:CDS |
| ACAAGCCCAGACCACCATTT+CGG | 0.406322 | 7.4:+10907003 | None:intergenic |
| CCTTTCTTCAGCTTGTGGGC+AGG | 0.410427 | 7.4:-10900115 | MS.gene061859:intron |
| GGCTGCCTAACAACCTCTTT+AGG | 0.419642 | 7.4:+10906306 | None:intergenic |
| CTTTCCATGTATCCCTCAAA+AGG | 0.420597 | 7.4:+10906363 | None:intergenic |
| AGACGAAGCAGAGGCTTGAC+TGG | 0.422678 | 7.4:+10907544 | None:intergenic |
| ACTCTGATAAGGAGTTAGTC+AGG | 0.423445 | 7.4:-10910966 | MS.gene061859:CDS |
| GATGATAACCAGCTATCTCT+TGG | 0.425734 | 7.4:-10906654 | MS.gene061859:CDS |
| CGGTCATCAAGTTTGGATCT+AGG | 0.426025 | 7.4:-10907290 | MS.gene061859:intron |
| GCTTGTGGGCAGGCTCTCTC+AGG | 0.427650 | 7.4:-10900105 | MS.gene061859:CDS |
| TAGTAACCGAAATGGTGGTC+TGG | 0.427859 | 7.4:-10907009 | MS.gene061859:CDS |
| GCTGCTATGCAGAGAATTGA+AGG | 0.429151 | 7.4:-10910886 | MS.gene061859:CDS |
| TACCGAACTTCCACTTCAAC+GGG | 0.429289 | 7.4:-10913083 | MS.gene061859:CDS |
| CGTGGACTCCTGAAGCAACT+TGG | 0.434510 | 7.4:-10909629 | MS.gene061859:CDS |
| TGGTTGAATCCCTTCTAGCC+TGG | 0.434978 | 7.4:+10911937 | None:intergenic |
| TTATCCTTTCTTCAGCTTGT+GGG | 0.437137 | 7.4:-10900119 | MS.gene061859:intron |
| CTGATGACAATAGTGACATC+AGG | 0.441651 | 7.4:-10906845 | MS.gene061859:CDS |
| GCAGAGGCAGCAGCTGGAAA+AGG | 0.442895 | 7.4:+10907092 | None:intergenic |
| TTTAGCACAATCAGCTATAC+GGG | 0.443629 | 7.4:+10908912 | None:intergenic |
| CTCACCATATGAAGAATTTG+AGG | 0.444041 | 7.4:+10905331 | None:intergenic |
| ATGAAGAATTTGAGGAATGC+TGG | 0.446130 | 7.4:+10905339 | None:intergenic |
| ACAGGCAAAGTCACTTGGTA+AGG | 0.446469 | 7.4:-10907426 | MS.gene061859:CDS |
| GGCTCTCAATCTAGCCAACT+TGG | 0.448527 | 7.4:-10905550 | MS.gene061859:CDS |
| CTTTGACCCTGTTATCCAAC+GGG | 0.454812 | 7.4:-10907730 | MS.gene061859:intron |
| CTAGTGAGAAAGAATGCAAC+TGG | 0.460172 | 7.4:-10906708 | MS.gene061859:CDS |
| TCACCTTCCATTCGTGATAG+AGG | 0.462746 | 7.4:-10907584 | MS.gene061859:CDS |
| TGCACCAGAAATACATCGTT+CGG | 0.463715 | 7.4:-10908748 | MS.gene061859:CDS |
| ACATTTCTCCAAGAGATAGC+TGG | 0.465381 | 7.4:+10906646 | None:intergenic |
| TTGAAGAGCTTGTCAAATGA+TGG | 0.468237 | 7.4:+10907066 | None:intergenic |
| TTGATATATACCATAGATGA+AGG | 0.468278 | 7.4:+10912140 | None:intergenic |
| ATCAATTCCATGGCAGACAC+TGG | 0.469342 | 7.4:-10905364 | MS.gene061859:CDS |
| CAGCCATGTTCAACAACATT+GGG | 0.472492 | 7.4:-10906288 | MS.gene061859:CDS |
| TCATTAGAGCGTTTAAATGT+TGG | 0.474930 | 7.4:-10905460 | MS.gene061859:CDS |
| CTCTGGTGTACTTCTTTCAC+AGG | 0.477132 | 7.4:-10907444 | MS.gene061859:CDS |
| GAGCTCTCTGACAGAGGAAT+CGG | 0.478338 | 7.4:+10902033 | None:intergenic |
| CAATCTCAACTGAATTCTCC+AGG | 0.479021 | 7.4:+10901798 | None:intergenic |
| TCAAAAGGCTTTCGACATGC+TGG | 0.479225 | 7.4:+10906378 | None:intergenic |
| AGAAGTTCAAGTTTATCGTC+GGG | 0.480812 | 7.4:-10907479 | MS.gene061859:CDS |
| AAGCTTTGAGTGAAGGACTT+AGG | 0.480961 | 7.4:-10906590 | MS.gene061859:CDS |
| TTGAGTGAAGGACTTAGGTC+AGG | 0.481033 | 7.4:-10906585 | MS.gene061859:CDS |
| CTTTCACAGGCAAAGTCACT+TGG | 0.481503 | 7.4:-10907431 | MS.gene061859:CDS |
| TTGCACGAAGCACTGCATTC+CGG | 0.482107 | 7.4:+10908884 | None:intergenic |
| ATAGTGATGGTGGCAGGAAG+TGG | 0.482456 | 7.4:-10905747 | MS.gene061859:CDS |
| CCGGTTAATTGATCCTAAAG+AGG | 0.482879 | 7.4:-10906319 | MS.gene061859:CDS |
| GTTGCATTCTTTCTCACTAG+TGG | 0.484489 | 7.4:+10906711 | None:intergenic |
| TGTTCTGTAGATAGTTTACT+AGG | 0.486114 | 7.4:+10905899 | None:intergenic |
| TATAAAGGTAGTAACCGAAA+TGG | 0.486704 | 7.4:-10907017 | MS.gene061859:CDS |
| ACAACTTCTAGAGTTCCCTT+TGG | 0.486937 | 7.4:+10906501 | None:intergenic |
| TTGTTAACAGAAAGATGCCC+TGG | 0.489238 | 7.4:-10901816 | MS.gene061859:intron |
| TTCCAAGTGGTTATATTACC+GGG | 0.489260 | 7.4:-10911892 | MS.gene061859:CDS |
| ACAATAATTGTTGAAAGAGC+AGG | 0.489351 | 7.4:-10913190 | MS.gene061859:CDS |
| AGGTTCTGACTGGTCTTCCA+GGG | 0.490533 | 7.4:-10906565 | MS.gene061859:CDS |
| GATACTGCTTATCAGTGTTG+TGG | 0.490699 | 7.4:+10906802 | None:intergenic |
| TCGGGGACATCTGTCTCCTC+TGG | 0.490803 | 7.4:-10907461 | MS.gene061859:CDS |
| TACAACATCAGATGGATCAT+AGG | 0.493812 | 7.4:+10905849 | None:intergenic |
| AAGATCTAGCATCGTAAAGC+AGG | 0.494097 | 7.4:-10909576 | MS.gene061859:intron |
| ATTGCAGTTAATAAATGAAG+AGG | 0.495585 | 7.4:-10907633 | MS.gene061859:intron |
| GGAAGGATAGCCCGTTGAAG+TGG | 0.495687 | 7.4:+10913073 | None:intergenic |
| TATCAAGATATACTCTGATA+AGG | 0.498496 | 7.4:-10910977 | MS.gene061859:CDS |
| TCTAGGAAAGCTCATTACCT+TGG | 0.498571 | 7.4:-10905793 | MS.gene061859:CDS |
| AGCCCTTCTAGTTGAATATG+AGG | 0.500351 | 7.4:+10906896 | None:intergenic |
| TATATCTTGATAGGGTCTAC+AGG | 0.500636 | 7.4:+10910988 | None:intergenic |
| AGTAACCGAAATGGTGGTCT+GGG | 0.501600 | 7.4:-10907008 | MS.gene061859:CDS |
| CTTCTGAAAGATTACAAGAA+AGG | 0.502501 | 7.4:-10906875 | MS.gene061859:CDS |
| CAAAGGCCAAAAGTTCTTCA+AGG | 0.502503 | 7.4:-10911829 | MS.gene061859:CDS |
| AGCATAATGGATCATCTCTC+CGG | 0.503614 | 7.4:-10907310 | MS.gene061859:CDS |
| CGTACACTCAAACATCTGAA+TGG | 0.504559 | 7.4:+10901596 | None:intergenic |
| GCAGCCATGTTCAACAACAT+TGG | 0.504747 | 7.4:-10906289 | MS.gene061859:CDS |
| TTCATCACGAAATTGAGGTC+CGG | 0.506159 | 7.4:+10912181 | None:intergenic |
| AAAGAGCAGGATCCTCAGCT+TGG | 0.507528 | 7.4:-10913177 | MS.gene061859:CDS |
| TGGGATGCAGAGGCAGCAGC+TGG | 0.511453 | 7.4:+10907086 | None:intergenic |
| AAAGCTTCATGAAGAGATGC+TGG | 0.514105 | 7.4:+10906606 | None:intergenic |
| AAGAGTGAGCTCTCTGACAG+AGG | 0.514120 | 7.4:+10902027 | None:intergenic |
| ATAGTTAAAGGCAGCAACCC+TGG | 0.514896 | 7.4:+10906548 | None:intergenic |
| AGCCCGTTGAAGTGGAAGTT+CGG | 0.515007 | 7.4:+10913081 | None:intergenic |
| TCACATTCAACAGAAGCTGC+TGG | 0.517511 | 7.4:+10905685 | None:intergenic |
| CTTCATGAAGCTTTGAGTGA+AGG | 0.517552 | 7.4:-10906597 | MS.gene061859:CDS |
| CCCTAGATAGTGATGGTGGC+AGG | 0.519354 | 7.4:-10905753 | MS.gene061859:CDS |
| TAATCACAACCAGCTTGAAA+AGG | 0.521733 | 7.4:+10909098 | None:intergenic |
| TATTCTTGTCATGAACCAAA+GGG | 0.522990 | 7.4:+10906076 | None:intergenic |
| ATATTGGCATATTAAAATTG+TGG | 0.523136 | 7.4:-10906113 | MS.gene061859:CDS |
| TACAAAAGATATCGTTCCTA+AGG | 0.524211 | 7.4:-10901753 | MS.gene061859:intron |
| TGGCAGGAAGTGGAGCTCTC+AGG | 0.524419 | 7.4:-10905737 | MS.gene061859:CDS |
| GGTGAGGATCATCCAAGTGC+TGG | 0.525863 | 7.4:+10906445 | None:intergenic |
| ATTTGAAGTCTTAATTTCCC+CGG | 0.526322 | 7.4:+10911874 | None:intergenic |
| CTACCGAACTTCCACTTCAA+CGG | 0.529551 | 7.4:-10913084 | MS.gene061859:CDS |
| TGCATACCCGTTGGATAACA+GGG | 0.529598 | 7.4:+10907724 | None:intergenic |
| ACTGAGATAAAACAATGGTC+AGG | 0.529615 | 7.4:+10901624 | None:intergenic |
| GTATGTCTGCTGGCAGGAGG+AGG | 0.532554 | 7.4:-10906683 | MS.gene061859:CDS |
| AAGAGCAGGATCCTCAGCTT+GGG | 0.535482 | 7.4:-10913176 | MS.gene061859:CDS |
| GCTCTCTCAGGAGGAACTGA+TGG | 0.536933 | 7.4:-10900093 | MS.gene061859:CDS |
| ATGGGTATGTTGGTTTCTCT+AGG | 0.537942 | 7.4:-10905810 | MS.gene061859:CDS |
| GTAGGAACGTCATCTGAAGA+TGG | 0.538448 | 7.4:-10905829 | MS.gene061859:CDS |
| GTTGAATATGAGGATGGTAA+AGG | 0.539003 | 7.4:+10906906 | None:intergenic |
| ATATTAATGCCAGGCTAGAA+GGG | 0.539984 | 7.4:-10911946 | MS.gene061859:CDS |
| TCATCTGAAGATGGGTATGT+TGG | 0.541060 | 7.4:-10905820 | MS.gene061859:CDS |
| AATAGGCGACGAGAACGCTC+TGG | 0.543230 | 7.4:+10907759 | None:intergenic |
| GCATATTCAGTCAATCCAAT+GGG | 0.544477 | 7.4:-10905583 | MS.gene061859:CDS |
| AGATGGATCATAGGAAGACT+TGG | 0.544530 | 7.4:+10905858 | None:intergenic |
| GAGCGTTTAAATGTTGGTGA+AGG | 0.545122 | 7.4:-10905454 | MS.gene061859:CDS |
| TAGAAGTTCAAGTTTATCGT+CGG | 0.547585 | 7.4:-10907480 | MS.gene061859:CDS |
| TCCTCACCATAAAGTTGCAC+AGG | 0.548676 | 7.4:-10906430 | MS.gene061859:CDS |
| TACCTTGGAAGATATTCGGC+TGG | 0.549978 | 7.4:-10905778 | MS.gene061859:CDS |
| AACATCTGCAATTGTTGCAA+TGG | 0.551677 | 7.4:-10907504 | MS.gene061859:CDS |
| GAGGCAGCAGCTGGAAAAGG+CGG | 0.552050 | 7.4:+10907095 | None:intergenic |
| CTCTTTAGGATCAATTAACC+GGG | 0.552996 | 7.4:+10906320 | None:intergenic |
| TGCATATTCAGTCAATCCAA+TGG | 0.554459 | 7.4:-10905584 | MS.gene061859:CDS |
| GTATTCTTGTCATGAACCAA+AGG | 0.555569 | 7.4:+10906075 | None:intergenic |
| GGACTCCTGAAGCAACTTGG+CGG | 0.556285 | 7.4:-10909626 | MS.gene061859:CDS |
| GACTTAGGTCAGGTTCTGAC+TGG | 0.556302 | 7.4:-10906575 | MS.gene061859:CDS |
| ATCTAGCCAACTTGGACAAG+TGG | 0.556364 | 7.4:-10905542 | MS.gene061859:CDS |
| TACTGTCCACTTGTCCAAGT+TGG | 0.558331 | 7.4:+10905536 | None:intergenic |
| TGAAGAATTTGAGGAATGCT+GGG | 0.558842 | 7.4:+10905340 | None:intergenic |
| CCAAAAGTTCGCTCTTCAGA+TGG | 0.561614 | 7.4:-10911917 | MS.gene061859:CDS |
| GACGTTCCTACAACATCAGA+TGG | 0.561676 | 7.4:+10905841 | None:intergenic |
| GCAACTGGACGTATGTCTGC+TGG | 0.563541 | 7.4:-10906693 | MS.gene061859:CDS |
| CCTGCCACCATCACTATCTA+GGG | 0.564900 | 7.4:+10905753 | None:intergenic |
| TATCAGAGTATATCTTGATA+GGG | 0.565430 | 7.4:+10910980 | None:intergenic |
| GACTCTAATTGTGACAGTCC+TGG | 0.565623 | 7.4:-10905625 | MS.gene061859:CDS |
| CTAGGTCTACTTCAATGCGA+GGG | 0.565837 | 7.4:+10905917 | None:intergenic |
| AAAGTTTCCTTCTCTATAAG+GGG | 0.566261 | 7.4:+10906773 | None:intergenic |
| CTAGATCCAAACTTGATGAC+CGG | 0.568552 | 7.4:+10907291 | None:intergenic |
| ATCCTCATATTCAACTAGAA+GGG | 0.569120 | 7.4:-10906898 | MS.gene061859:CDS |
| CTCTGATAAGGAGTTAGTCA+GGG | 0.569583 | 7.4:-10910965 | MS.gene061859:CDS |
| TGAAGTTCATCACGAAATTG+AGG | 0.570234 | 7.4:+10912176 | None:intergenic |
| CCTTTGACCCTGTTATCCAA+CGG | 0.572190 | 7.4:-10907731 | MS.gene061859:CDS |
| AGGTGAAAGATATTAATGCC+AGG | 0.573894 | 7.4:-10911955 | MS.gene061859:CDS |
| CTGGATGCCCCTTATAGAGA+AGG | 0.574876 | 7.4:-10906780 | MS.gene061859:CDS |
| GGACAGTAGCATGAATTTCG+AGG | 0.575082 | 7.4:-10905521 | MS.gene061859:CDS |
| TTGAATTTGAGTGATTATGT+CGG | 0.577543 | 7.4:+10906980 | None:intergenic |
| TCGTTCGGCTGAGTTATATG+AGG | 0.577643 | 7.4:-10908733 | MS.gene061859:CDS |
| CCGTTGGATAACAGGGTCAA+AGG | 0.579058 | 7.4:+10907731 | None:intergenic |
| CTTCACTCGTTGTTGCAGCA+AGG | 0.580162 | 7.4:-10906525 | MS.gene061859:CDS |
| TTGCATTAATTGCTTAACAA+AGG | 0.580296 | 7.4:-10901413 | MS.gene061859:intron |
| TCAATTCCATGGCAGACACT+GGG | 0.580366 | 7.4:-10905363 | MS.gene061859:CDS |
| CCTTGCGAACATCTGCACTC+TGG | 0.581091 | 7.4:+10900024 | None:intergenic |
| TAGGAACGTCATCTGAAGAT+GGG | 0.581520 | 7.4:-10905828 | MS.gene061859:CDS |
| TCTTTACAGCTTCAGTTGAG+TGG | 0.582306 | 7.4:+10905386 | None:intergenic |
| GAAATGTCAAGTTATTCAGA+TGG | 0.582491 | 7.4:-10906630 | MS.gene061859:CDS |
| TTGTTGCAGCAAGGTCCAAA+GGG | 0.582853 | 7.4:-10906516 | MS.gene061859:CDS |
| GTTGTTGCAGCAAGGTCCAA+AGG | 0.583709 | 7.4:-10906517 | MS.gene061859:CDS |
| CTTCTAGTTGAATATGAGGA+TGG | 0.585471 | 7.4:+10906900 | None:intergenic |
| ATTGATTGCAAATTCAATCA+CGG | 0.585930 | 7.4:+10906176 | None:intergenic |
| GACGAAGCAGAGGCTTGACT+GGG | 0.587080 | 7.4:+10907545 | None:intergenic |
| CAGTTAATAAATGAAGAGGA+TGG | 0.587122 | 7.4:-10907629 | MS.gene061859:CDS |
| AGCAGCTTCTGTTGAATGTG+AGG | 0.587390 | 7.4:-10905683 | MS.gene061859:CDS |
| TCTAGTGAACGTAACAGTGC+AGG | 0.587952 | 7.4:+10906228 | None:intergenic |
| TTTCATTCTGAGTTTGTCAG+TGG | 0.592718 | 7.4:-10905980 | MS.gene061859:CDS |
| TCATCATCGGTAACCAGTAG+AGG | 0.592993 | 7.4:+10901451 | None:intergenic |
| ATAGTGACATCAGGGAGGCT+AGG | 0.593421 | 7.4:-10906836 | MS.gene061859:CDS |
| CAGTCTGTTTACTTGAAACA+GGG | 0.594121 | 7.4:+10904632 | None:intergenic |
| CGCCAAGAAAAGTAGTCCAA+AGG | 0.594287 | 7.4:-10911846 | MS.gene061859:CDS |
| CAGGAAATGTATACACAAGC+CGG | 0.594948 | 7.4:-10912200 | MS.gene061859:CDS |
| TGTGGGCAGGCTCTCTCAGG+AGG | 0.596265 | 7.4:-10900102 | MS.gene061859:CDS |
| GCCTGTGCAACTTTATGGTG+AGG | 0.596403 | 7.4:+10906429 | None:intergenic |
| AGCTGTAAAGATCAATTCCA+TGG | 0.596649 | 7.4:-10905374 | MS.gene061859:CDS |
| TTCAGGAGTCCACGAAAACA+TGG | 0.598968 | 7.4:+10909638 | None:intergenic |
| TTAATAAATGAAGAGGATGG+AGG | 0.599331 | 7.4:-10907626 | MS.gene061859:CDS |
| CTGGACGTATGTCTGCTGGC+AGG | 0.600126 | 7.4:-10906689 | MS.gene061859:CDS |
| CAGTGCACCTCTATCACGAA+TGG | 0.601724 | 7.4:+10907577 | None:intergenic |
| GCTGGGCCCAGTGTCTGCCA+TGG | 0.603319 | 7.4:+10905357 | None:intergenic |
| GACAGTAGCATGAATTTCGA+GGG | 0.605478 | 7.4:-10905520 | MS.gene061859:CDS |
| GGAATGCAGTGCTTCGTGCA+AGG | 0.606285 | 7.4:-10908882 | MS.gene061859:intron |
| TCCCCGGTAATATAACCACT+TGG | 0.607725 | 7.4:+10911890 | None:intergenic |
| AGCAGCAGAAGGTGATGTCA+CGG | 0.608738 | 7.4:-10911016 | MS.gene061859:intron |
| ATACCTTGGTCCAAACAGAC+TGG | 0.609551 | 7.4:+10904572 | None:intergenic |
| AAAGGCCAAAAGTTCTTCAA+GGG | 0.611156 | 7.4:-10911828 | MS.gene061859:CDS |
| CAGGCAAAGTCACTTGGTAA+GGG | 0.612604 | 7.4:-10907425 | MS.gene061859:CDS |
| ATTGAAGGTCTTGTTCTAGG+AGG | 0.613383 | 7.4:-10910871 | MS.gene061859:intron |
| GGCGGATCACGAGACGATGG+AGG | 0.614369 | 7.4:+10907113 | None:intergenic |
| AGATGAACAAAGGTCTCCAA+AGG | 0.615332 | 7.4:-10906208 | MS.gene061859:CDS |
| GGCCAAAAGTTCTTCAAGGG+AGG | 0.616438 | 7.4:-10911825 | MS.gene061859:CDS |
| AAAGGTAGTAACCGAAATGG+TGG | 0.617234 | 7.4:-10907014 | MS.gene061859:CDS |
| TGAAGAGCTTGTCAAATGAT+GGG | 0.618411 | 7.4:+10907067 | None:intergenic |
| AAACATGCAATGAATGCAGA+AGG | 0.618604 | 7.4:-10906144 | MS.gene061859:CDS |
| GCTGGTTCCCTAGATAGTGA+TGG | 0.619613 | 7.4:-10905760 | MS.gene061859:CDS |
| ACTCCCAATGTTGTTGAACA+TGG | 0.621019 | 7.4:+10906285 | None:intergenic |
| AACCAGCCGAATATCTTCCA+AGG | 0.622634 | 7.4:+10905776 | None:intergenic |
| GGTTCCCTAGATAGTGATGG+TGG | 0.622894 | 7.4:-10905757 | MS.gene061859:CDS |
| ATTACTATGATATGATGACT+TGG | 0.624242 | 7.4:+10906941 | None:intergenic |
| TGATTAAGTTCCAATGCAGA+AGG | 0.625253 | 7.4:+10905409 | None:intergenic |
| CCAGAGTGCAGATGTTCGCA+AGG | 0.626592 | 7.4:-10900024 | None:intergenic |
| GCGGATCACGAGACGATGGA+GGG | 0.629075 | 7.4:+10907114 | None:intergenic |
| GACGTATGTCTGCTGGCAGG+AGG | 0.630416 | 7.4:-10906686 | MS.gene061859:CDS |
| GAAGTTCAAGTTTATCGTCG+GGG | 0.631675 | 7.4:-10907478 | MS.gene061859:CDS |
| TGATGACAATAGTGACATCA+GGG | 0.632100 | 7.4:-10906844 | MS.gene061859:CDS |
| ATTGCAGATGTTCCATAACC+AGG | 0.632401 | 7.4:+10907515 | None:intergenic |
| TTATAGACACCATAAGCAGT+AGG | 0.632452 | 7.4:+10907035 | None:intergenic |
| GTAAAGTCAATACAGGAGGA+AGG | 0.632736 | 7.4:+10913056 | None:intergenic |
| TGACCAGTCTGTTTGGACCA+AGG | 0.634255 | 7.4:-10904575 | MS.gene061859:intron |
| TCTGCTTCGTCTAATCCACC+TGG | 0.635431 | 7.4:-10907533 | MS.gene061859:CDS |
| GCACCTCTATCACGAATGGA+AGG | 0.636243 | 7.4:+10907581 | None:intergenic |
| AAGAGGATGGAGGAATACAC+AGG | 0.637453 | 7.4:-10907616 | MS.gene061859:CDS |
| ATCTACAGAACAAGAAAGAG+CGG | 0.639058 | 7.4:-10905888 | MS.gene061859:CDS |
| CATCATCGGTAACCAGTAGA+GGG | 0.639786 | 7.4:+10901452 | None:intergenic |
| CGTTTCAGATGCAATGAGCG+AGG | 0.639838 | 7.4:-10908694 | MS.gene061859:intron |
| ACTAGGTCTACTTCAATGCG+AGG | 0.641616 | 7.4:+10905916 | None:intergenic |
| AAAGGCGGATCACGAGACGA+TGG | 0.642101 | 7.4:+10907110 | None:intergenic |
| GTTGCATGCAAGCAAACAGA+AGG | 0.645304 | 7.4:-10907378 | MS.gene061859:CDS |
| AAAAGAGAAGGTAGAAACGA+GGG | 0.646628 | 7.4:+10900062 | None:intergenic |
| TGTCAAATGATGGGATGCAG+AGG | 0.648596 | 7.4:+10907076 | None:intergenic |
| AATCTCAACTGAATTCTCCA+GGG | 0.650859 | 7.4:+10901799 | None:intergenic |
| TCTTCAGATGGTATTCCAAG+TGG | 0.653318 | 7.4:-10911905 | MS.gene061859:CDS |
| CAAAAGCTGGAGAGTCAGAG+AGG | 0.656741 | 7.4:-10913149 | MS.gene061859:CDS |
| TATAGGTACGATCTACTGCA+AGG | 0.659106 | 7.4:-10907812 | MS.gene061859:intron |
| TCCAAGTGGTTATATTACCG+GGG | 0.660621 | 7.4:-10911891 | MS.gene061859:CDS |
| TAGATATGCAATGCTGATGA+CGG | 0.669434 | 7.4:-10904658 | MS.gene061859:CDS |
| CTGCATAGCAGCAATACGAA+CGG | 0.669736 | 7.4:+10910897 | None:intergenic |
| TACGTTCACTAGATGAACAA+AGG | 0.670717 | 7.4:-10906218 | MS.gene061859:CDS |
| TAGGTCTACTTCAATGCGAG+GGG | 0.678410 | 7.4:+10905918 | None:intergenic |
| AGGTGGATTAGACGAAGCAG+AGG | 0.679058 | 7.4:+10907535 | None:intergenic |
| ATTCTTGTCATGAACCAAAG+GGG | 0.689132 | 7.4:+10906077 | None:intergenic |
| CAGAATGAAATTAAGAACTG+CGG | 0.691345 | 7.4:+10905993 | None:intergenic |
| ATCAGACTGAGATAAAACAA+TGG | 0.711078 | 7.4:+10901619 | None:intergenic |
| ATTAACCGGGAAAAGACGTG+TGG | 0.712845 | 7.4:+10906333 | None:intergenic |
| CTGTGAAAGAAGTACACCAG+AGG | 0.717289 | 7.4:+10907445 | None:intergenic |
| GCAGATGTTCCATAACCAGG+TGG | 0.726100 | 7.4:+10907518 | None:intergenic |
| TTAGCACAATCAGCTATACG+GGG | 0.750481 | 7.4:+10908913 | None:intergenic |
| TAGATGAAGGAAGATTGTAG+CGG | 0.777937 | 7.4:+10912153 | None:intergenic |
| TGACAATAGTGACATCAGGG+AGG | 0.783231 | 7.4:-10906841 | MS.gene061859:CDS |
| AGACCGTTAACATCTAAACG+AGG | 0.785577 | 7.4:+10905487 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 10900025 | 10913224 | 10900025 | ID=MS.gene061859 |
| chr7.4 | mRNA | 10900025 | 10913224 | 10900025 | ID=MS.gene061859.t1;Parent=MS.gene061859 |
| chr7.4 | exon | 10913069 | 10913224 | 10913069 | ID=MS.gene061859.t1.exon1;Parent=MS.gene061859.t1 |
| chr7.4 | CDS | 10913069 | 10913224 | 10913069 | ID=cds.MS.gene061859.t1;Parent=MS.gene061859.t1 |
| chr7.4 | exon | 10912904 | 10912966 | 10912904 | ID=MS.gene061859.t1.exon2;Parent=MS.gene061859.t1 |
| chr7.4 | CDS | 10912904 | 10912966 | 10912904 | ID=cds.MS.gene061859.t1;Parent=MS.gene061859.t1 |
| chr7.4 | exon | 10912151 | 10912219 | 10912151 | ID=MS.gene061859.t1.exon3;Parent=MS.gene061859.t1 |
| chr7.4 | CDS | 10912151 | 10912219 | 10912151 | ID=cds.MS.gene061859.t1;Parent=MS.gene061859.t1 |
| chr7.4 | exon | 10911810 | 10911975 | 10911810 | ID=MS.gene061859.t1.exon4;Parent=MS.gene061859.t1 |
| chr7.4 | CDS | 10911810 | 10911975 | 10911810 | ID=cds.MS.gene061859.t1;Parent=MS.gene061859.t1 |
| chr7.4 | exon | 10910872 | 10911033 | 10910872 | ID=MS.gene061859.t1.exon5;Parent=MS.gene061859.t1 |
| chr7.4 | CDS | 10910872 | 10911033 | 10910872 | ID=cds.MS.gene061859.t1;Parent=MS.gene061859.t1 |
| chr7.4 | exon | 10909577 | 10909674 | 10909577 | ID=MS.gene061859.t1.exon6;Parent=MS.gene061859.t1 |
| chr7.4 | CDS | 10909577 | 10909674 | 10909577 | ID=cds.MS.gene061859.t1;Parent=MS.gene061859.t1 |
| chr7.4 | exon | 10909200 | 10909274 | 10909200 | ID=MS.gene061859.t1.exon7;Parent=MS.gene061859.t1 |
| chr7.4 | CDS | 10909200 | 10909274 | 10909200 | ID=cds.MS.gene061859.t1;Parent=MS.gene061859.t1 |
| chr7.4 | exon | 10909054 | 10909122 | 10909054 | ID=MS.gene061859.t1.exon8;Parent=MS.gene061859.t1 |
| chr7.4 | CDS | 10909054 | 10909122 | 10909054 | ID=cds.MS.gene061859.t1;Parent=MS.gene061859.t1 |
| chr7.4 | exon | 10908883 | 10908968 | 10908883 | ID=MS.gene061859.t1.exon9;Parent=MS.gene061859.t1 |
| chr7.4 | CDS | 10908883 | 10908968 | 10908883 | ID=cds.MS.gene061859.t1;Parent=MS.gene061859.t1 |
| chr7.4 | exon | 10908695 | 10908812 | 10908695 | ID=MS.gene061859.t1.exon10;Parent=MS.gene061859.t1 |
| chr7.4 | CDS | 10908695 | 10908812 | 10908695 | ID=cds.MS.gene061859.t1;Parent=MS.gene061859.t1 |
| chr7.4 | exon | 10907731 | 10907829 | 10907731 | ID=MS.gene061859.t1.exon11;Parent=MS.gene061859.t1 |
| chr7.4 | CDS | 10907731 | 10907829 | 10907731 | ID=cds.MS.gene061859.t1;Parent=MS.gene061859.t1 |
| chr7.4 | exon | 10907291 | 10907648 | 10907291 | ID=MS.gene061859.t1.exon12;Parent=MS.gene061859.t1 |
| chr7.4 | CDS | 10907291 | 10907648 | 10907291 | ID=cds.MS.gene061859.t1;Parent=MS.gene061859.t1 |
| chr7.4 | exon | 10905336 | 10907143 | 10905336 | ID=MS.gene061859.t1.exon13;Parent=MS.gene061859.t1 |
| chr7.4 | CDS | 10905336 | 10907143 | 10905336 | ID=cds.MS.gene061859.t1;Parent=MS.gene061859.t1 |
| chr7.4 | exon | 10904576 | 10904677 | 10904576 | ID=MS.gene061859.t1.exon14;Parent=MS.gene061859.t1 |
| chr7.4 | CDS | 10904576 | 10904677 | 10904576 | ID=cds.MS.gene061859.t1;Parent=MS.gene061859.t1 |
| chr7.4 | exon | 10901997 | 10902101 | 10901997 | ID=MS.gene061859.t1.exon15;Parent=MS.gene061859.t1 |
| chr7.4 | CDS | 10901997 | 10902101 | 10901997 | ID=cds.MS.gene061859.t1;Parent=MS.gene061859.t1 |
| chr7.4 | exon | 10901754 | 10901828 | 10901754 | ID=MS.gene061859.t1.exon16;Parent=MS.gene061859.t1 |
| chr7.4 | CDS | 10901754 | 10901828 | 10901754 | ID=cds.MS.gene061859.t1;Parent=MS.gene061859.t1 |
| chr7.4 | exon | 10901601 | 10901669 | 10901601 | ID=MS.gene061859.t1.exon17;Parent=MS.gene061859.t1 |
| chr7.4 | CDS | 10901601 | 10901669 | 10901601 | ID=cds.MS.gene061859.t1;Parent=MS.gene061859.t1 |
| chr7.4 | exon | 10901414 | 10901482 | 10901414 | ID=MS.gene061859.t1.exon18;Parent=MS.gene061859.t1 |
| chr7.4 | CDS | 10901414 | 10901482 | 10901414 | ID=cds.MS.gene061859.t1;Parent=MS.gene061859.t1 |
| chr7.4 | exon | 10900025 | 10900126 | 10900025 | ID=MS.gene061859.t1.exon19;Parent=MS.gene061859.t1 |
| chr7.4 | CDS | 10900025 | 10900126 | 10900025 | ID=cds.MS.gene061859.t1;Parent=MS.gene061859.t1 |
| Gene Sequence |
| Protein sequence |
