Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061942.t1 | AFK35673.1 | 80 | 80 | 4 | 1 | 154 | 221 | 13 | 92 | 3.70E-25 | 125.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061942.t1 | Q43207 | 66.7 | 75 | 12 | 2 | 159 | 221 | 21 | 94 | 4.1e-17 | 90.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061942.t1 | G7LF61 | 80.0 | 80 | 4 | 1 | 154 | 221 | 13 | 92 | 2.7e-25 | 125.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050611 | MS.gene061942 | 0.810222 | 1.28E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061942.t1 | MTR_8g012340 | 73.750 | 80 | 9 | 1 | 154 | 221 | 13 | 92 | 3.67e-23 | 99.0 |
| MS.gene061942.t1 | MTR_4g074930 | 87.838 | 74 | 8 | 1 | 14 | 87 | 28 | 100 | 1.38e-22 | 97.4 |
| MS.gene061942.t1 | MTR_4g074930 | 87.838 | 74 | 8 | 1 | 14 | 87 | 28 | 100 | 1.46e-22 | 97.4 |
| MS.gene061942.t1 | MTR_4g074930 | 87.838 | 74 | 8 | 1 | 14 | 87 | 28 | 100 | 1.51e-22 | 97.4 |
| MS.gene061942.t1 | MTR_4g074930 | 87.838 | 74 | 8 | 1 | 14 | 87 | 28 | 100 | 1.65e-22 | 97.1 |
| MS.gene061942.t1 | MTR_8g432580 | 85.333 | 75 | 11 | 0 | 18 | 92 | 52 | 126 | 1.86e-22 | 91.3 |
| MS.gene061942.t1 | MTR_8g080980 | 56.667 | 90 | 17 | 2 | 154 | 221 | 1 | 90 | 7.11e-21 | 92.4 |
| MS.gene061942.t1 | MTR_7g053470 | 53.488 | 86 | 22 | 2 | 154 | 221 | 1 | 86 | 1.03e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061942.t1 | AT5G48570 | 63.889 | 72 | 14 | 1 | 163 | 222 | 29 | 100 | 3.79e-19 | 87.4 |
| MS.gene061942.t1 | AT3G25230 | 69.697 | 66 | 7 | 2 | 168 | 221 | 27 | 91 | 1.49e-17 | 82.8 |
| MS.gene061942.t1 | AT3G25230 | 69.697 | 66 | 7 | 2 | 168 | 221 | 27 | 91 | 1.67e-17 | 82.4 |
Find 67 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACGTGTAGTTCATTATAC+TGG | 0.326846 | 5.3:+51745763 | MS.gene061942:intron |
| CAAGAAGGAGGAAAGTAGTT+TGG | 0.335928 | 5.3:+51744822 | MS.gene061942:CDS |
| TTAGTTGGGGTCTTCTTTGA+AGG | 0.356776 | 5.3:-51745016 | None:intergenic |
| CTCTCCTATCACTGCCTAAC+TGG | 0.360966 | 5.3:+51745436 | MS.gene061942:CDS |
| ACTACTTTCAATTTCACTCT+TGG | 0.361943 | 5.3:+51745832 | MS.gene061942:CDS |
| AGTTTGATTCTAGCAGAGAT+AGG | 0.388381 | 5.3:+51745806 | MS.gene061942:CDS |
| TATACTGGAACGTTGCTTGA+TGG | 0.393092 | 5.3:+51745778 | MS.gene061942:CDS |
| GATTCCTCTGAAGTGGTATC+TGG | 0.396870 | 5.3:-51745064 | None:intergenic |
| TGTTGAAGTGTTTACCAGTT+AGG | 0.405796 | 5.3:-51745450 | None:intergenic |
| TTTACCAGTTAGGCAGTGAT+AGG | 0.411690 | 5.3:-51745440 | None:intergenic |
| TCCTATTCTTGACCTATGGC+TGG | 0.413607 | 5.3:+51745402 | MS.gene061942:CDS |
| TCCCACATCGTACTATTATC+AGG | 0.413728 | 5.3:+51746407 | MS.gene061942:CDS |
| CTCTGAAGTGGTATCTGGCT+GGG | 0.413916 | 5.3:-51745059 | None:intergenic |
| CCTCTGAAGTGGTATCTGGC+TGG | 0.418500 | 5.3:-51745060 | None:intergenic |
| CACTTCTTCCTCATCGGAAG+AGG | 0.423585 | 5.3:-51745104 | None:intergenic |
| TTTCTCCTATTCTTGACCTA+TGG | 0.423873 | 5.3:+51745398 | MS.gene061942:CDS |
| CTTCAAGAATAATAATAGAT+AGG | 0.425201 | 5.3:-51746030 | None:intergenic |
| CGCCAAGCAAAAGGCGTTGA+AGG | 0.441849 | 5.3:+51744795 | MS.gene061942:CDS |
| GGGGTCTTCTTTGAAGGAGC+AGG | 0.444374 | 5.3:-51745010 | None:intergenic |
| CACTTTCACTTCTTCCTCAT+CGG | 0.467568 | 5.3:-51745110 | None:intergenic |
| AAGAAGAAGCTTCTCAAAGA+AGG | 0.467998 | 5.3:+51745645 | MS.gene061942:CDS |
| GTTTGATTCTAGCAGAGATA+GGG | 0.475863 | 5.3:+51745807 | MS.gene061942:CDS |
| TAGGCAGATGGAAGGTGATA+AGG | 0.476180 | 5.3:-51746011 | None:intergenic |
| AGAGGTTGCCGCCAAGCAAA+AGG | 0.479123 | 5.3:+51744786 | MS.gene061942:CDS |
| ATCTATTATTATTCTTGAAG+AGG | 0.490271 | 5.3:+51746033 | MS.gene061942:CDS |
| TCCAGCCATAGGTCAAGAAT+AGG | 0.501501 | 5.3:-51745403 | None:intergenic |
| GGAGAGTTTCTTCCAGCCAT+AGG | 0.506877 | 5.3:-51745414 | None:intergenic |
| AAGTGTGAGCAACAAAATAG+TGG | 0.510612 | 5.3:-51745335 | None:intergenic |
| CTCTGAGGAATCTGAGGATG+AGG | 0.511350 | 5.3:+51744852 | MS.gene061942:CDS |
| GAAGGAGGAAAGTAGTTTGG+AGG | 0.514144 | 5.3:+51744825 | MS.gene061942:CDS |
| GACTTCGACTTCGCCGGTGC+CGG | 0.516399 | 5.3:+51745567 | MS.gene061942:CDS |
| AATGAAATTAAAAGCATGGC+AGG | 0.519602 | 5.3:+51746375 | MS.gene061942:CDS |
| AATTGGATTATCGCCGGCAC+CGG | 0.525961 | 5.3:-51745580 | None:intergenic |
| GGCGTTGAAGGTAGTCAAGA+AGG | 0.528027 | 5.3:+51744807 | MS.gene061942:CDS |
| GTGGGTACTAGAGAATTCAT+AGG | 0.534544 | 5.3:+51746433 | MS.gene061942:CDS |
| TTCAATTTCACTCTTGGACA+AGG | 0.538952 | 5.3:+51745838 | MS.gene061942:CDS |
| CAGTGAGTGCAAAGAAGCAA+GGG | 0.541082 | 5.3:+51744758 | MS.gene061942:CDS |
| CTTTGATATAGGCAAGAGGC+AGG | 0.543584 | 5.3:+51744717 | MS.gene061942:CDS |
| GTCAAATGAAATTAAAAGCA+TGG | 0.545516 | 5.3:+51746371 | MS.gene061942:CDS |
| GCAGGCTGAGGAAGAAGTCA+AGG | 0.547712 | 5.3:+51744735 | MS.gene061942:CDS |
| ATAGGTCAAGAATAGGAGAA+AGG | 0.553533 | 5.3:-51745396 | None:intergenic |
| GCAGTGAGTGCAAAGAAGCA+AGG | 0.558038 | 5.3:+51744757 | MS.gene061942:CDS |
| AGAGTCAGATTCCTCTGAAG+TGG | 0.558525 | 5.3:-51745071 | None:intergenic |
| AATAATAATAGATAGGCAGA+TGG | 0.568838 | 5.3:-51746023 | None:intergenic |
| CTTGAGAATTGGATTATCGC+CGG | 0.576084 | 5.3:-51745586 | None:intergenic |
| CATATGTAGACACTGTCATA+GGG | 0.583382 | 5.3:-51746464 | None:intergenic |
| GGAATCCTCTGAGGAATCTG+AGG | 0.584932 | 5.3:+51744846 | MS.gene061942:CDS |
| TATAGGCAAGAGGCAGGCTG+AGG | 0.588543 | 5.3:+51744723 | MS.gene061942:CDS |
| TTTGATTCTAGCAGAGATAG+GGG | 0.593989 | 5.3:+51745808 | MS.gene061942:CDS |
| TCGTACTATTATCAGGCAAG+TGG | 0.597519 | 5.3:+51746414 | MS.gene061942:CDS |
| AAAGAAGCAAGGGGTAGAAG+AGG | 0.598623 | 5.3:+51744768 | MS.gene061942:CDS |
| AAAGACGACTTCGACTTCGC+CGG | 0.605504 | 5.3:+51745561 | MS.gene061942:intron |
| AAGCTTCTCAAAGAAGGTGA+AGG | 0.613170 | 5.3:+51745651 | MS.gene061942:CDS |
| CGGCGATAATCCAATTCTCA+AGG | 0.616014 | 5.3:+51745587 | MS.gene061942:CDS |
| TGCCTGATAATAGTACGATG+TGG | 0.623695 | 5.3:-51746409 | None:intergenic |
| ATAATAGATAGGCAGATGGA+AGG | 0.627317 | 5.3:-51746019 | None:intergenic |
| TTCACTTTGATATAGGCAAG+AGG | 0.629817 | 5.3:+51744713 | MS.gene061942:CDS |
| CGTACTATTATCAGGCAAGT+GGG | 0.636740 | 5.3:+51746415 | MS.gene061942:CDS |
| CCAGCCAGATACCACTTCAG+AGG | 0.639180 | 5.3:+51745060 | MS.gene061942:CDS |
| GCCTGATAATAGTACGATGT+GGG | 0.647015 | 5.3:-51746408 | None:intergenic |
| CAGTTAGGCAGTGATAGGAG+AGG | 0.665643 | 5.3:-51745435 | None:intergenic |
| TGACAGCTCCTCTTCCGATG+AGG | 0.667005 | 5.3:+51745096 | MS.gene061942:CDS |
| AGTGAGTGCAAAGAAGCAAG+GGG | 0.679652 | 5.3:+51744759 | MS.gene061942:CDS |
| GTTGAAGGTAGTCAAGAAGG+AGG | 0.683060 | 5.3:+51744810 | MS.gene061942:CDS |
| CTCATCCTCAGATTCCTCAG+AGG | 0.686828 | 5.3:-51744851 | None:intergenic |
| GATAATCCAATTCTCAAGGT+CGG | 0.697498 | 5.3:+51745591 | MS.gene061942:CDS |
| TAGTTTGGAGGAATCCTCTG+AGG | 0.723183 | 5.3:+51744837 | MS.gene061942:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATTTTTGTTATTTTAAT+TGG | + | chr5.3:51745885-51745904 | MS.gene061942:intron | 10.0% |
| !! | AAATCAAACATAGAAATTAA+CGG | - | chr5.3:51745913-51745932 | None:intergenic | 15.0% |
| !!! | ATGTTTAAGATATAAATCAA+AGG | - | chr5.3:51745183-51745202 | None:intergenic | 15.0% |
| !!! | TTAATTTCTATGTTTGATTT+AGG | + | chr5.3:51745913-51745932 | MS.gene061942:intron | 15.0% |
| !! | ATCTATTATTATTCTTGAAG+AGG | + | chr5.3:51746033-51746052 | MS.gene061942:CDS | 20.0% |
| !! | CTTCAAGAATAATAATAGAT+AGG | - | chr5.3:51746033-51746052 | None:intergenic | 20.0% |
| !!! | GTGTAATTATTTTTTTGTTG+CGG | + | chr5.3:51745476-51745495 | MS.gene061942:intron | 20.0% |
| !!! | GTTTTAAAAAACAGAACAAT+AGG | - | chr5.3:51745274-51745293 | None:intergenic | 20.0% |
| !!! | TCTATAATTCACTTTTTAGA+AGG | + | chr5.3:51745297-51745316 | MS.gene061942:intron | 20.0% |
| !!! | TCTTTTATTTTCTTCACAAA+TGG | - | chr5.3:51746275-51746294 | None:intergenic | 20.0% |
| !!! | TTCTAAAAAGTGAATTATAG+AGG | - | chr5.3:51745298-51745317 | None:intergenic | 20.0% |
| ! | AATAATAATAGATAGGCAGA+TGG | - | chr5.3:51746026-51746045 | None:intergenic | 25.0% |
| ! | GATTTCAAACAATAAAAAGC+AGG | + | chr5.3:51746123-51746142 | MS.gene061942:intron | 25.0% |
| ! | GTCAAATGAAATTAAAAGCA+TGG | + | chr5.3:51746371-51746390 | MS.gene061942:CDS | 25.0% |
| ! | TGTCATCAATAACATATTGT+TGG | + | chr5.3:51746086-51746105 | MS.gene061942:intron | 25.0% |
| ! | TTATATCTTAAACACTGTGT+TGG | + | chr5.3:51745245-51745264 | MS.gene061942:intron | 25.0% |
| !! | ACCTTTAATTTCCTCATAAT+AGG | - | chr5.3:51746216-51746235 | None:intergenic | 25.0% |
| !! | CCTTTAATTTCCTCATAATA+GGG | - | chr5.3:51746215-51746234 | None:intergenic | 25.0% |
| !! | TATGTCATGTTAATTTTACG+TGG | + | chr5.3:51744963-51744982 | MS.gene061942:intron | 25.0% |
| !! | TGTTTGATTTAGGTTATGTT+TGG | + | chr5.3:51745923-51745942 | MS.gene061942:intron | 25.0% |
| !!! | CGGTTTATATTTTTTTGTTG+TGG | + | chr5.3:51745496-51745515 | MS.gene061942:intron | 25.0% |
| !!! | GAGGTAAATTTTTAAAAGTC+AGG | + | chr5.3:51746052-51746071 | MS.gene061942:intron | 25.0% |
| AATCAACGAAGAAAGAACAT+AGG | - | chr5.3:51745703-51745722 | None:intergenic | 30.0% | |
| ACTACTTTCAATTTCACTCT+TGG | + | chr5.3:51745832-51745851 | MS.gene061942:CDS | 30.0% | |
| CCCTATTATGAGGAAATTAA+AGG | + | chr5.3:51746212-51746231 | MS.gene061942:intron | 30.0% | |
| GTAAAATTTCGATATTCCTG+CGG | + | chr5.3:51745527-51745546 | MS.gene061942:intron | 30.0% | |
| TAGTTATCAGCAAATGAGAT+AGG | + | chr5.3:51746187-51746206 | MS.gene061942:intron | 30.0% | |
| TTACGTGTAGTTCATTATAC+TGG | + | chr5.3:51745763-51745782 | MS.gene061942:intron | 30.0% | |
| ! | AATGAAATTAAAAGCATGGC+AGG | + | chr5.3:51746375-51746394 | MS.gene061942:CDS | 30.0% |
| ! | AGAATAGGAGAAAGGATTTT+TGG | - | chr5.3:51745391-51745410 | None:intergenic | 30.0% |
| ! | CATTTGCTGATAACTACAAA+AGG | - | chr5.3:51746183-51746202 | None:intergenic | 30.0% |
| ! | GAATAGGAGAAAGGATTTTT+GGG | - | chr5.3:51745390-51745409 | None:intergenic | 30.0% |
| !! | GGCTATTTTCACTTTGATAT+AGG | + | chr5.3:51744706-51744725 | MS.gene061942:CDS | 30.0% |
| !! | TGAAAAGTGCTTATCATATC+AGG | + | chr5.3:51745977-51745996 | MS.gene061942:intron | 30.0% |
| !!! | TCACATTCCCATTTTTAGTT+GGG | - | chr5.3:51745033-51745052 | None:intergenic | 30.0% |
| !!! | TTCACATTCCCATTTTTAGT+TGG | - | chr5.3:51745034-51745053 | None:intergenic | 30.0% |
| AAAAAGGAAATCGGAAAGCA+AGG | + | chr5.3:51745618-51745637 | MS.gene061942:CDS | 35.0% | |
| AAGAAGAAGCTTCTCAAAGA+AGG | + | chr5.3:51745645-51745664 | MS.gene061942:CDS | 35.0% | |
| AAGAAGACCCCAACTAAAAA+TGG | + | chr5.3:51745022-51745041 | MS.gene061942:CDS | 35.0% | |
| AAGTGTGAGCAACAAAATAG+TGG | - | chr5.3:51745338-51745357 | None:intergenic | 35.0% | |
| AGAAGACCCCAACTAAAAAT+GGG | + | chr5.3:51745023-51745042 | MS.gene061942:CDS | 35.0% | |
| AGTTTGATTCTAGCAGAGAT+AGG | + | chr5.3:51745806-51745825 | MS.gene061942:CDS | 35.0% | |
| ATAATAGATAGGCAGATGGA+AGG | - | chr5.3:51746022-51746041 | None:intergenic | 35.0% | |
| ATAGGTCAAGAATAGGAGAA+AGG | - | chr5.3:51745399-51745418 | None:intergenic | 35.0% | |
| ATGCTTTAACGCATTTCGAA+TGG | + | chr5.3:51744893-51744912 | MS.gene061942:intron | 35.0% | |
| GATAATCCAATTCTCAAGGT+CGG | + | chr5.3:51745591-51745610 | MS.gene061942:CDS | 35.0% | |
| GTCGGTGAAAAAAAGGAAAT+CGG | + | chr5.3:51745609-51745628 | MS.gene061942:CDS | 35.0% | |
| GTTTGATTCTAGCAGAGATA+GGG | + | chr5.3:51745807-51745826 | MS.gene061942:CDS | 35.0% | |
| TTCAATTTCACTCTTGGACA+AGG | + | chr5.3:51745838-51745857 | MS.gene061942:CDS | 35.0% | |
| TTCACTTTGATATAGGCAAG+AGG | + | chr5.3:51744713-51744732 | MS.gene061942:CDS | 35.0% | |
| TTTCTCCTATTCTTGACCTA+TGG | + | chr5.3:51745398-51745417 | MS.gene061942:CDS | 35.0% | |
| TTTGATTCTAGCAGAGATAG+GGG | + | chr5.3:51745808-51745827 | MS.gene061942:CDS | 35.0% | |
| ! | TGTTGAAGTGTTTACCAGTT+AGG | - | chr5.3:51745453-51745472 | None:intergenic | 35.0% |
| !! | GCTGCTTACTTTTGATATTG+TGG | + | chr5.3:51746301-51746320 | MS.gene061942:intron | 35.0% |
| !!! | CACATTCCCATTTTTAGTTG+GGG | - | chr5.3:51745032-51745051 | None:intergenic | 35.0% |
| !!! | TTTTGGGTTGGAAACAAAAC+AGG | - | chr5.3:51745374-51745393 | None:intergenic | 35.0% |
| AAGCTTCTCAAAGAAGGTGA+AGG | + | chr5.3:51745651-51745670 | MS.gene061942:CDS | 40.0% | |
| CAAGAAGGAGGAAAGTAGTT+TGG | + | chr5.3:51744822-51744841 | MS.gene061942:CDS | 40.0% | |
| CACTTTCACTTCTTCCTCAT+CGG | - | chr5.3:51745113-51745132 | None:intergenic | 40.0% | |
| CGTACTATTATCAGGCAAGT+GGG | + | chr5.3:51746415-51746434 | MS.gene061942:CDS | 40.0% | |
| CTTGAGAATTGGATTATCGC+CGG | - | chr5.3:51745589-51745608 | None:intergenic | 40.0% | |
| GAGATAGGATCCCTATTATG+AGG | + | chr5.3:51746202-51746221 | MS.gene061942:intron | 40.0% | |
| GCCTGATAATAGTACGATGT+GGG | - | chr5.3:51746411-51746430 | None:intergenic | 40.0% | |
| GTGGGTACTAGAGAATTCAT+AGG | + | chr5.3:51746433-51746452 | MS.gene061942:CDS | 40.0% | |
| TATACTGGAACGTTGCTTGA+TGG | + | chr5.3:51745778-51745797 | MS.gene061942:CDS | 40.0% | |
| TCCCACATCGTACTATTATC+AGG | + | chr5.3:51746407-51746426 | MS.gene061942:CDS | 40.0% | |
| TCGTACTATTATCAGGCAAG+TGG | + | chr5.3:51746414-51746433 | MS.gene061942:CDS | 40.0% | |
| TCTCAAAGAAGGTGAAGGTT+GGG | + | chr5.3:51745656-51745675 | MS.gene061942:intron | 40.0% | |
| TCTCAAGGTCGGTGAAAAAA+AGG | + | chr5.3:51745602-51745621 | MS.gene061942:CDS | 40.0% | |
| TGCCTGATAATAGTACGATG+TGG | - | chr5.3:51746412-51746431 | None:intergenic | 40.0% | |
| TTAGTTGGGGTCTTCTTTGA+AGG | - | chr5.3:51745019-51745038 | None:intergenic | 40.0% | |
| TTCTCAAAGAAGGTGAAGGT+TGG | + | chr5.3:51745655-51745674 | MS.gene061942:intron | 40.0% | |
| TTTACCAGTTAGGCAGTGAT+AGG | - | chr5.3:51745443-51745462 | None:intergenic | 40.0% | |
| ! | TTTTCACCGACCTTGAGAAT+TGG | - | chr5.3:51745600-51745619 | None:intergenic | 40.0% |
| !!! | AGGAGAAAGGATTTTTGGGT+TGG | - | chr5.3:51745386-51745405 | None:intergenic | 40.0% |
| AAAGAAGCAAGGGGTAGAAG+AGG | + | chr5.3:51744768-51744787 | MS.gene061942:CDS | 45.0% | |
| AGGTTAGTGCATTGGAACGA+CGG | + | chr5.3:51745858-51745877 | MS.gene061942:intron | 45.0% | |
| AGTGAGTGCAAAGAAGCAAG+GGG | + | chr5.3:51744759-51744778 | MS.gene061942:CDS | 45.0% | |
| CAGTGAGTGCAAAGAAGCAA+GGG | + | chr5.3:51744758-51744777 | MS.gene061942:CDS | 45.0% | |
| CGGCGATAATCCAATTCTCA+AGG | + | chr5.3:51745587-51745606 | MS.gene061942:CDS | 45.0% | |
| CTTGGACAAGGTTAGTGCAT+TGG | + | chr5.3:51745850-51745869 | MS.gene061942:intron | 45.0% | |
| CTTTGATATAGGCAAGAGGC+AGG | + | chr5.3:51744717-51744736 | MS.gene061942:CDS | 45.0% | |
| GAAGGAGGAAAGTAGTTTGG+AGG | + | chr5.3:51744825-51744844 | MS.gene061942:CDS | 45.0% | |
| GAAGTCGAAGTCGTCTTTCA+TGG | - | chr5.3:51745559-51745578 | None:intergenic | 45.0% | |
| GTTGAAGGTAGTCAAGAAGG+AGG | + | chr5.3:51744810-51744829 | MS.gene061942:CDS | 45.0% | |
| TAGGCAGATGGAAGGTGATA+AGG | - | chr5.3:51746014-51746033 | None:intergenic | 45.0% | |
| TAGTTTGGAGGAATCCTCTG+AGG | + | chr5.3:51744837-51744856 | MS.gene061942:CDS | 45.0% | |
| TCCAGCCATAGGTCAAGAAT+AGG | - | chr5.3:51745406-51745425 | None:intergenic | 45.0% | |
| TCCTATTCTTGACCTATGGC+TGG | + | chr5.3:51745402-51745421 | MS.gene061942:CDS | 45.0% | |
| TCTTTCATGGAATCAACCGC+AGG | - | chr5.3:51745546-51745565 | None:intergenic | 45.0% | |
| ! | AGAGTCAGATTCCTCTGAAG+TGG | - | chr5.3:51745074-51745093 | None:intergenic | 45.0% |
| ! | TACCTTCAACGCCTTTTGCT+TGG | - | chr5.3:51744800-51744819 | None:intergenic | 45.0% |
| !! | GATTCCTCTGAAGTGGTATC+TGG | - | chr5.3:51745067-51745086 | None:intergenic | 45.0% |
| AAAGACGACTTCGACTTCGC+CGG | + | chr5.3:51745561-51745580 | MS.gene061942:intron | 50.0% | |
| AATTGGATTATCGCCGGCAC+CGG | - | chr5.3:51745583-51745602 | None:intergenic | 50.0% | |
| CACTTCTTCCTCATCGGAAG+AGG | - | chr5.3:51745107-51745126 | None:intergenic | 50.0% | |
| CAGTTAGGCAGTGATAGGAG+AGG | - | chr5.3:51745438-51745457 | None:intergenic | 50.0% | |
| CTCATCCTCAGATTCCTCAG+AGG | - | chr5.3:51744854-51744873 | None:intergenic | 50.0% | |
| CTCTCCTATCACTGCCTAAC+TGG | + | chr5.3:51745436-51745455 | MS.gene061942:CDS | 50.0% | |
| GCAGTGAGTGCAAAGAAGCA+AGG | + | chr5.3:51744757-51744776 | MS.gene061942:CDS | 50.0% | |
| GGAGAGTTTCTTCCAGCCAT+AGG | - | chr5.3:51745417-51745436 | None:intergenic | 50.0% | |
| GGTTGGGATGCTCATGATGT+TGG | + | chr5.3:51745672-51745691 | MS.gene061942:intron | 50.0% | |
| ! | CTCTGAGGAATCTGAGGATG+AGG | + | chr5.3:51744852-51744871 | MS.gene061942:CDS | 50.0% |
| ! | CTTCAACGCCTTTTGCTTGG+CGG | - | chr5.3:51744797-51744816 | None:intergenic | 50.0% |
| ! | GGAATCCTCTGAGGAATCTG+AGG | + | chr5.3:51744846-51744865 | MS.gene061942:CDS | 50.0% |
| ! | GGCGTTGAAGGTAGTCAAGA+AGG | + | chr5.3:51744807-51744826 | MS.gene061942:CDS | 50.0% |
| !! | CTCTGAAGTGGTATCTGGCT+GGG | - | chr5.3:51745062-51745081 | None:intergenic | 50.0% |
| AGAGGTTGCCGCCAAGCAAA+AGG | + | chr5.3:51744786-51744805 | MS.gene061942:CDS | 55.0% | |
| CCAGCCAGATACCACTTCAG+AGG | + | chr5.3:51745060-51745079 | MS.gene061942:CDS | 55.0% | |
| GCAGGCTGAGGAAGAAGTCA+AGG | + | chr5.3:51744735-51744754 | MS.gene061942:CDS | 55.0% | |
| TATAGGCAAGAGGCAGGCTG+AGG | + | chr5.3:51744723-51744742 | MS.gene061942:CDS | 55.0% | |
| TGACAGCTCCTCTTCCGATG+AGG | + | chr5.3:51745096-51745115 | MS.gene061942:CDS | 55.0% | |
| ! | GGAGCAGGAGCTTTTGCAAC+AGG | - | chr5.3:51744998-51745017 | None:intergenic | 55.0% |
| ! | GGGGTCTTCTTTGAAGGAGC+AGG | - | chr5.3:51745013-51745032 | None:intergenic | 55.0% |
| !! | CCTCTGAAGTGGTATCTGGC+TGG | - | chr5.3:51745063-51745082 | None:intergenic | 55.0% |
| !! | CGCCAAGCAAAAGGCGTTGA+AGG | + | chr5.3:51744795-51744814 | MS.gene061942:CDS | 55.0% |
| GACTTCGACTTCGCCGGTGC+CGG | + | chr5.3:51745567-51745586 | MS.gene061942:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 51744688 | 51746471 | 51744688 | ID=MS.gene061942 |
| chr5.3 | mRNA | 51744688 | 51746471 | 51744688 | ID=MS.gene061942.t1;Parent=MS.gene061942 |
| chr5.3 | exon | 51744688 | 51744873 | 51744688 | ID=MS.gene061942.t1.exon1;Parent=MS.gene061942.t1 |
| chr5.3 | CDS | 51744688 | 51744873 | 51744688 | ID=cds.MS.gene061942.t1;Parent=MS.gene061942.t1 |
| chr5.3 | exon | 51744992 | 51745129 | 51744992 | ID=MS.gene061942.t1.exon2;Parent=MS.gene061942.t1 |
| chr5.3 | CDS | 51744992 | 51745129 | 51744992 | ID=cds.MS.gene061942.t1;Parent=MS.gene061942.t1 |
| chr5.3 | exon | 51745316 | 51745457 | 51745316 | ID=MS.gene061942.t1.exon3;Parent=MS.gene061942.t1 |
| chr5.3 | CDS | 51745316 | 51745457 | 51745316 | ID=cds.MS.gene061942.t1;Parent=MS.gene061942.t1 |
| chr5.3 | exon | 51745565 | 51745672 | 51745565 | ID=MS.gene061942.t1.exon4;Parent=MS.gene061942.t1 |
| chr5.3 | CDS | 51745565 | 51745672 | 51745565 | ID=cds.MS.gene061942.t1;Parent=MS.gene061942.t1 |
| chr5.3 | exon | 51745773 | 51745859 | 51745773 | ID=MS.gene061942.t1.exon5;Parent=MS.gene061942.t1 |
| chr5.3 | CDS | 51745773 | 51745859 | 51745773 | ID=cds.MS.gene061942.t1;Parent=MS.gene061942.t1 |
| chr5.3 | exon | 51745999 | 51746054 | 51745999 | ID=MS.gene061942.t1.exon6;Parent=MS.gene061942.t1 |
| chr5.3 | CDS | 51745999 | 51746054 | 51745999 | ID=cds.MS.gene061942.t1;Parent=MS.gene061942.t1 |
| chr5.3 | exon | 51746358 | 51746471 | 51746358 | ID=MS.gene061942.t1.exon7;Parent=MS.gene061942.t1 |
| chr5.3 | CDS | 51746358 | 51746471 | 51746358 | ID=cds.MS.gene061942.t1;Parent=MS.gene061942.t1 |
| Gene Sequence |
| Protein sequence |
