AlfalfaGEDB | MS.gene050611

M. sativa cultivar XinJiangDaYe / MS.gene050611

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050611	MS.gene055818	0.800141	1.66E-48	-1.69E-46
MS.gene050611	MS.gene061942	0.810222	1.28E-50	-1.69E-46
MS.gene050611	MS.gene06269	0.865171	7.16E-65	-1.69E-46
MS.gene050611	MS.gene063357	0.80116	1.03E-48	-1.69E-46
MS.gene050611	MS.gene063846	0.803429	3.50E-49	-1.69E-46
MS.gene050611	MS.gene066752	0.818527	1.87E-52	-1.69E-46
MS.gene050611	MS.gene067656	0.8173	3.54E-52	-1.69E-46
MS.gene050611	MS.gene24211	0.801751	7.77E-49	-1.69E-46
MS.gene050611	MS.gene24885	0.815177	1.06E-51	-1.69E-46
MS.gene050611	MS.gene25778	0.815241	1.02E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050611.t1	MTR_8g432580	87.838	74	9	0	8	81	52	125	3.71e-25	92.8
MS.gene050611.t1	MTR_4g074930	86.842	76	9	1	2	77	26	100	1.80e-24	96.7
MS.gene050611.t1	MTR_4g074930	86.842	76	9	1	2	77	26	100	1.93e-24	96.7
MS.gene050611.t1	MTR_4g074930	86.842	76	9	1	2	77	26	100	2.26e-24	96.3
MS.gene050611.t1	MTR_4g074930	86.842	76	9	1	2	77	26	100	2.53e-24	96.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 31 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGCAAGGGGTAGAAG+AGG	0.598623	7.3:+1327527	MS.gene050611:CDS
AAAGTCAGATTCCTCTGAAG+TGG	0.537679	7.3:-1327830	None:intergenic
AATGAAATTAAAAGCATGGT+AGG	0.528809	7.3:+1328434	MS.gene050611:CDS
AGAGGTTGCCGCCAAGCAAA+AGG	0.479123	7.3:+1327545	MS.gene050611:CDS
AGTGAGTGCAAAGAAGCAAG+GGG	0.679652	7.3:+1327518	MS.gene050611:CDS
CAAGAAGGAGGAAAGTAGTT+TGG	0.335928	7.3:+1327581	MS.gene050611:CDS
CACTTCTTCCTCATCGGAAG+AGG	0.423585	7.3:-1327863	None:intergenic
CACTTTCACTTCTTCCTCAT+CGG	0.467568	7.3:-1327869	None:intergenic
CAGTGAGTGCAAAGAAGCAA+GGG	0.541082	7.3:+1327517	MS.gene050611:CDS
CCAGCCAGAGACCACTTCAG+AGG	0.625597	7.3:+1327819	MS.gene050611:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAACATCAGACAAAATTGG+GGG	-	chr7.3:1327239-1327258	None:intergenic	30.0%
CCCTATTATGAGGAAATTAA+AGG	+	chr7.3:1328271-1328290	MS.gene050611:intron	30.0%
TAGTTATCAGCAAATGAGAT+AGG	+	chr7.3:1328246-1328265	MS.gene050611:intron	30.0%
TTAACCAAAATCTAGAAGCT+TGG	+	chr7.3:1327302-1327321	MS.gene050611:intron	30.0%
AAGAAGACCCCAACTAAAAA+TGG	+	chr7.3:1327781-1327800	MS.gene050611:CDS	35.0%
AAGTGTGAGCAACAAAATAG+TGG	-	chr7.3:1328097-1328116	None:intergenic	35.0%
AGAAGACCCCAACTAAAAAT+GGG	+	chr7.3:1327782-1327801	MS.gene050611:CDS	35.0%
ATAGGTCAAGAATAGGAGAA+AGG	-	chr7.3:1328158-1328177	None:intergenic	35.0%
ATGCTTTAACGCATTTCGAA+TGG	+	chr7.3:1327652-1327671	MS.gene050611:intron	35.0%
TTCACTTTGATATAGGCAAG+AGG	+	chr7.3:1327472-1327491	MS.gene050611:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	1327221	1328455	1327221	ID=MS.gene050611
chr7.3	mRNA	1327221	1328455	1327221	ID=MS.gene050611.t1;Parent=MS.gene050611
chr7.3	exon	1327221	1327230	1327221	ID=MS.gene050611.t1.exon1;Parent=MS.gene050611.t1
chr7.3	CDS	1327221	1327230	1327221	ID=cds.MS.gene050611.t1;Parent=MS.gene050611.t1
chr7.3	exon	1327487	1327632	1327487	ID=MS.gene050611.t1.exon2;Parent=MS.gene050611.t1
chr7.3	CDS	1327487	1327632	1327487	ID=cds.MS.gene050611.t1;Parent=MS.gene050611.t1
chr7.3	exon	1327751	1327888	1327751	ID=MS.gene050611.t1.exon3;Parent=MS.gene050611.t1
chr7.3	CDS	1327751	1327888	1327751	ID=cds.MS.gene050611.t1;Parent=MS.gene050611.t1
chr7.3	exon	1328417	1328455	1328417	ID=MS.gene050611.t1.exon4;Parent=MS.gene050611.t1
chr7.3	CDS	1328417	1328455	1328417	ID=cds.MS.gene050611.t1;Parent=MS.gene050611.t1

Gene Sequence

>MS.gene050611

ATGAAGCTTGGTTCTCCCCCAATTTTGTCTGATGTTATTATGTTGTATTTTCTGATGTTGATTATATATGCTTGAACCGAATTAACCAAAATCTAGAAGCTTGGTTCTCCTTCAATATTATTTGATGTTCTGATATTGATCATGCTGTGCAATGCTATAGAGTTGTTGATTAGTTGAACTGATTTTAAAGTGAATTTTTTTTCTCTGATTATTTTTTTATGTTCTGATGTCGGTTTTCTTATTGGGCTATTTTCACTTTGATATAGGCAAGAGGCAGGCTGAGGAAGAAGTCAAGGCAGTGAGTGCAAAGAAGCAAGGGGTAGAAGAGGTTGCCGCCAAGCAAAAGGCGTTGAAGGTAGTCAAGAAGGAGGAAAGTAGTTTGGAGGAATCCTCTGAGGAATCTGAGGATGAGGTATTATATTTCACTGCATATGCTTTAACGCATTTCGAATGGTACTGATCATGTATTTGTTTGTTATTGTTATTGTTATGTTATTGATTTATGTCATGTTAATTTTACGTGGTCTCAGAAACCTGTTGCAAAAGCTCCTGCTCCTTCAAAGAAGACCCCAACTAAAAATGGGAATGTGAAGAAAGCCCAGCCAGAGACCACTTCAGAGGAATCTGACTTTGATGACAGCTCCTCTTCCGATGAGGAAGAAGTGAAAGTGAGTGCAGCAAATTTAAAGAGACATCTTGAAGTTTATTGCATGATATTCCTTTGATTTATATCTTAAACATTAAAGAGACATCTTGAAGTTTATTGCATGATATTTCTTTGATTTATATCTTAAACACTGTGTTGGCAACCTATTGTTCTGTTTTTTAAAACGCCTCTATAATTCACTTTTTAGAAGGAAAAAAAAAAACGAACCACTATTTTGTTGCTCACACTTTATACGTATTACTCCTGTTTTGTTTCCAACCCAAAAATCCTTTCTCCTATTCTTGACCTATGGCTGAAAGAAACTCTCCTCTCATATCACTGCCTAACAGGAAGAAACTGAAAAAATTGATTCCTTTTGTAGTTATCAGCAAATGAGATAGGATCCCTATTATGAGGAAATTAAAGGTGAGTTATTATTTGAGCATGTAGAAGTGATTTCTAAGCCATTTGTGAAGAAAATAAAAGATTATTTGCTGCTTACTTTTGATATTGTGGATTGATGTAACTGAAAACTTTTGATGATTTGCAGCTAGATTTTGAGAGTCAAATGAAATTAAAAGCATGGTAG

Protein sequence

>MS.gene050611.t1

MKLGKRQAEEEVKAVSAKKQGVEEVAAKQKALKVVKKEESSLEESSEESEDEKPVAKAPAPSKKTPTKNGNVKKAQPETTSEESDFDDSSSSDEEEVKLDFESQMKLKAW