Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061943.t1 | XP_003615238.1 | 99 | 104 | 1 | 0 | 1 | 104 | 1 | 104 | 3.00E-47 | 197.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061943.t1 | Q8VXX9 | 68.5 | 111 | 30 | 2 | 1 | 106 | 1 | 111 | 2.5e-34 | 146.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061943.t1 | G7KBG1 | 99.0 | 104 | 1 | 0 | 1 | 104 | 1 | 104 | 2.1e-47 | 197.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049260 | MS.gene061943 | -0.803733 | 3.03E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene061943 | -0.803474 | 3.43E-49 | -1.69E-46 |
| MS.gene050228 | MS.gene061943 | -0.800606 | 1.33E-48 | -1.69E-46 |
| MS.gene052665 | MS.gene061943 | -0.819084 | 1.40E-52 | -1.69E-46 |
| MS.gene054942 | MS.gene061943 | -0.816311 | 5.90E-52 | -1.69E-46 |
| MS.gene055358 | MS.gene061943 | -0.802805 | 4.71E-49 | -1.69E-46 |
| MS.gene057469 | MS.gene061943 | -0.815613 | 8.45E-52 | -1.69E-46 |
| MS.gene060480 | MS.gene061943 | -0.811675 | 6.22E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061943.t1 | MTR_5g065550 | 99.038 | 104 | 1 | 0 | 1 | 104 | 1 | 104 | 1.48e-73 | 214 |
| MS.gene061943.t1 | MTR_3g099773 | 74.038 | 104 | 25 | 2 | 3 | 104 | 2 | 105 | 8.22e-50 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061943.t1 | AT4G14600 | 68.468 | 111 | 30 | 2 | 1 | 106 | 1 | 111 | 8.30e-51 | 157 |
| MS.gene061943.t1 | AT1G29060 | 66.667 | 108 | 34 | 1 | 1 | 106 | 1 | 108 | 4.23e-47 | 147 |
| MS.gene061943.t1 | AT1G29060 | 70.312 | 64 | 19 | 0 | 43 | 106 | 4 | 67 | 6.98e-28 | 97.8 |
Find 33 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTCTTGTTCAATCTTCTT+AGG | 0.276292 | 5.3:+51737280 | None:intergenic |
| GTACAGGTTGCTGAGGAGAT+AGG | 0.380028 | 5.3:-51737767 | MS.gene061943:intron |
| CACAGAGCTGCTTCTTCTTA+CGG | 0.391375 | 5.3:-51739304 | MS.gene061943:CDS |
| GCAGCAAATGACAATGATAA+AGG | 0.399193 | 5.3:-51737325 | MS.gene061943:intron |
| ATCGGAGGCCGCACCGGGTC+GGG | 0.399280 | 5.3:+51739152 | None:intergenic |
| AGAAGCAGCTCTGTGGGAAT+TGG | 0.410252 | 5.3:+51739312 | None:intergenic |
| ATCTCATCGGAGGCCGCACC+GGG | 0.429967 | 5.3:+51739147 | None:intergenic |
| GATCTCATCGGAGGCCGCAC+CGG | 0.441770 | 5.3:+51739146 | None:intergenic |
| CCATGGGATCAATACGCAAT+TGG | 0.445697 | 5.3:+51739124 | None:intergenic |
| GCGCTGTCCCTTTCCGATCA+AGG | 0.448825 | 5.3:-51739279 | MS.gene061943:intron |
| CAATATGGTTCGAACCACTT+TGG | 0.455603 | 5.3:+51737253 | None:intergenic |
| AGCAGCTCTGTGGGAATTGG+CGG | 0.461854 | 5.3:+51739315 | None:intergenic |
| CATCGGAGGCCGCACCGGGT+CGG | 0.476186 | 5.3:+51739151 | None:intergenic |
| AGAGATACCTTGATCGGAAA+GGG | 0.490033 | 5.3:+51739272 | None:intergenic |
| GCGTATTGATCCCATGGACT+TGG | 0.495420 | 5.3:-51739118 | MS.gene061943:CDS |
| GAGTTCATCGTCCAAGTCCA+TGG | 0.506585 | 5.3:+51739107 | None:intergenic |
| TACAGGTTGCTGAGGAGATA+GGG | 0.518350 | 5.3:-51737766 | MS.gene061943:intron |
| CCAATTGCGTATTGATCCCA+TGG | 0.542939 | 5.3:-51739124 | MS.gene061943:CDS |
| ACAATGATAAAGGCTCAAGC+TGG | 0.557678 | 5.3:-51737315 | MS.gene061943:CDS |
| TAGAGATACCTTGATCGGAA+AGG | 0.570498 | 5.3:+51739271 | None:intergenic |
| AGTTCATCGTCCAAGTCCAT+GGG | 0.585829 | 5.3:+51739108 | None:intergenic |
| GTAAGAAGAAGCAGCTCTGT+GGG | 0.596400 | 5.3:+51739306 | None:intergenic |
| GACTTGGACGATGAACTCAC+TGG | 0.600598 | 5.3:-51739102 | MS.gene061943:CDS |
| AACAAGAGCATCATCCAAAG+TGG | 0.604677 | 5.3:-51737267 | MS.gene061943:intron |
| GTCTTCATACCCAAGTCAGA+AGG | 0.616448 | 5.3:-51739080 | MS.gene061943:CDS |
| AGAGATAGAGATACCTTGAT+CGG | 0.625604 | 5.3:+51739266 | None:intergenic |
| AATACGCAATTGGATCTCAT+CGG | 0.630316 | 5.3:+51739134 | None:intergenic |
| AGTTCTGGTACAGGTTGCTG+AGG | 0.633639 | 5.3:-51737774 | MS.gene061943:intron |
| CGTAAGAAGAAGCAGCTCTG+TGG | 0.635507 | 5.3:+51739305 | None:intergenic |
| ACTTAGTACCCGACCCGGTG+CGG | 0.648119 | 5.3:-51739160 | MS.gene061943:CDS |
| ACGCAATTGGATCTCATCGG+AGG | 0.679188 | 5.3:+51739137 | None:intergenic |
| AGAGCTGCTTCTTCTTACGG+CGG | 0.688668 | 5.3:-51739301 | MS.gene061943:CDS |
| GATGGACTTAGTACCCGACC+CGG | 0.732292 | 5.3:-51739165 | MS.gene061943:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTATTTTATTATACAATT+AGG | - | chr5.3:51738931-51738950 | MS.gene061943:intron | 10.0% |
| !!! | AAATTTTCAATTGCAAATTA+TGG | - | chr5.3:51738344-51738363 | MS.gene061943:intron | 15.0% |
| !!! | TAAATATTATTTTCTGGAAT+GGG | + | chr5.3:51738261-51738280 | None:intergenic | 15.0% |
| !!! | TATAACTATCTACAATTTTT+AGG | - | chr5.3:51738110-51738129 | MS.gene061943:intron | 15.0% |
| !!! | TTCTACTAAATATTATTTTC+TGG | + | chr5.3:51738267-51738286 | None:intergenic | 15.0% |
| !! | AAATTAAAATGTTAACGAGA+CGG | + | chr5.3:51739137-51739156 | None:intergenic | 20.0% |
| !! | AACAAATAACATGAACAATA+TGG | + | chr5.3:51739259-51739278 | None:intergenic | 20.0% |
| !! | ATTGTTAATTTCTCTGTTAT+TGG | + | chr5.3:51738599-51738618 | None:intergenic | 20.0% |
| !! | TTGTTAATTTCTCTGTTATT+GGG | + | chr5.3:51738598-51738617 | None:intergenic | 20.0% |
| !!! | AAAACTATTTTGCCTAAATA+TGG | + | chr5.3:51738857-51738876 | None:intergenic | 20.0% |
| !!! | AAATATTATTTTCTGGAATG+GGG | + | chr5.3:51738260-51738279 | None:intergenic | 20.0% |
| !!! | AACTTTAAAAAGTTCTTTTG+TGG | - | chr5.3:51737951-51737970 | MS.gene061943:intron | 20.0% |
| !!! | CTAAATATTATTTTCTGGAA+TGG | + | chr5.3:51738262-51738281 | None:intergenic | 20.0% |
| !!! | GTTTTACTATGACTTTAAAT+AGG | + | chr5.3:51737642-51737661 | None:intergenic | 20.0% |
| !!! | TAGTTATTCCTTTTAGAATT+TGG | - | chr5.3:51738410-51738429 | MS.gene061943:intron | 20.0% |
| !!! | TCAAGTTTTCAAACAAAAAA+AGG | + | chr5.3:51737562-51737581 | None:intergenic | 20.0% |
| !!! | TTACCTTTTAACTAACTTTA+GGG | + | chr5.3:51738452-51738471 | None:intergenic | 20.0% |
| ! | AAACCCTAAAGTTAGTTAAA+AGG | - | chr5.3:51738446-51738465 | MS.gene061943:intron | 25.0% |
| ! | AATTGAACCTTAATGAGTAA+TGG | + | chr5.3:51737806-51737825 | None:intergenic | 25.0% |
| ! | ACCAAAAAGAAAAAAGAATG+AGG | + | chr5.3:51738673-51738692 | None:intergenic | 25.0% |
| ! | ATGAAAACCATTACTCATTA+AGG | - | chr5.3:51737796-51737815 | MS.gene061943:intron | 25.0% |
| ! | CTAAAGTTAGTTAAAAGGTA+AGG | - | chr5.3:51738451-51738470 | MS.gene061943:intron | 25.0% |
| ! | CTCTTTATTGACAATTTACT+TGG | + | chr5.3:51738174-51738193 | None:intergenic | 25.0% |
| ! | GATTATTGAATTGTATGTGT+TGG | - | chr5.3:51737293-51737312 | MS.gene061943:CDS | 25.0% |
| ! | GCATAAATTGATCAATTACT+AGG | + | chr5.3:51739089-51739108 | None:intergenic | 25.0% |
| ! | TATATACTATATATGCTACC+TGG | - | chr5.3:51738223-51738242 | MS.gene061943:intron | 25.0% |
| ! | TATATGTATAAAATTCCGAG+TGG | - | chr5.3:51737512-51737531 | MS.gene061943:intron | 25.0% |
| ! | TCAACTTACTATTATGTTGT+GGG | - | chr5.3:51738955-51738974 | MS.gene061943:intron | 25.0% |
| ! | TTGTTTGAAAACTTGATATC+CGG | - | chr5.3:51737566-51737585 | MS.gene061943:intron | 25.0% |
| !! | AAAAAGGGTATGAAATACAA+AGG | + | chr5.3:51738020-51738039 | None:intergenic | 25.0% |
| !! | AACATATATGCATGATAATG+TGG | - | chr5.3:51738300-51738319 | MS.gene061943:intron | 25.0% |
| !! | ATAGATATCACTCTTCTTTT+AGG | - | chr5.3:51737866-51737885 | MS.gene061943:intron | 25.0% |
| !! | TTTTACTCTTGAAATGTTGA+TGG | - | chr5.3:51738873-51738892 | MS.gene061943:intron | 25.0% |
| !!! | ACAATTTTTAGGTTACTTAC+CGG | - | chr5.3:51738121-51738140 | MS.gene061943:intron | 25.0% |
| !!! | AGAACTTTTTAAAGTTTGTC+AGG | + | chr5.3:51737947-51737966 | None:intergenic | 25.0% |
| !!! | ATTCCTTTTAGAATTTGGTT+AGG | - | chr5.3:51738415-51738434 | MS.gene061943:intron | 25.0% |
| !!! | CTTACCTTTTAACTAACTTT+AGG | + | chr5.3:51738453-51738472 | None:intergenic | 25.0% |
| !!! | CTTGTTTAGATTTTGTTTGT+TGG | - | chr5.3:51738813-51738832 | MS.gene061943:intron | 25.0% |
| !!! | TCCTCATTCTTTTTTCTTTT+TGG | - | chr5.3:51738669-51738688 | MS.gene061943:intron | 25.0% |
| !!! | TGCTTTAATTTGTTTCTTTG+TGG | - | chr5.3:51739280-51739299 | MS.gene061943:CDS | 25.0% |
| AACGATGAATTGAAATTCGA+AGG | + | chr5.3:51737257-51737276 | None:intergenic | 30.0% | |
| AATAACAAGTCCAAAGTGAA+AGG | + | chr5.3:51737474-51737493 | None:intergenic | 30.0% | |
| ACACTATAATTTCATCAAGC+TGG | + | chr5.3:51738636-51738655 | None:intergenic | 30.0% | |
| ATAACAAGTCCAAAGTGAAA+GGG | + | chr5.3:51737473-51737492 | None:intergenic | 30.0% | |
| CAATTTATGCACTCTTTAGT+AGG | - | chr5.3:51739099-51739118 | MS.gene061943:CDS | 30.0% | |
| CATGCTAAATCAAATAGTTC+TGG | - | chr5.3:51738705-51738724 | MS.gene061943:intron | 30.0% | |
| CGAACAAATCAATCCTTATA+AGG | + | chr5.3:51738487-51738506 | None:intergenic | 30.0% | |
| CGTTATCAACTTCTAAGTAT+AGG | - | chr5.3:51737907-51737926 | MS.gene061943:intron | 30.0% | |
| GTCAACTTACTATTATGTTG+TGG | - | chr5.3:51738954-51738973 | MS.gene061943:intron | 30.0% | |
| TACTTAGAACAGGGAAAAAA+GGG | + | chr5.3:51738035-51738054 | None:intergenic | 30.0% | |
| TATCTTATGCAAAACCCTTT+GGG | + | chr5.3:51737766-51737785 | None:intergenic | 30.0% | |
| TTATCTTATGCAAAACCCTT+TGG | + | chr5.3:51737767-51737786 | None:intergenic | 30.0% | |
| TTGAAGTTTGAGCTCATAAT+GGG | - | chr5.3:51738086-51738105 | MS.gene061943:intron | 30.0% | |
| TTGATTTAGCATGACAACAA+AGG | + | chr5.3:51738698-51738717 | None:intergenic | 30.0% | |
| ! | CATGATAATGTGGTAACTTA+TGG | - | chr5.3:51738310-51738329 | MS.gene061943:intron | 30.0% |
| ! | GTAATGGTTTTCATCAATCA+AGG | + | chr5.3:51737790-51737809 | None:intergenic | 30.0% |
| ! | GTTTCTTTGTGGTTTACTTT+TGG | - | chr5.3:51739291-51739310 | MS.gene061943:CDS | 30.0% |
| ! | TTTGAAGTTTGAGCTCATAA+TGG | - | chr5.3:51738085-51738104 | MS.gene061943:intron | 30.0% |
| !! | AAATCAAATAGTTCTGGTAC+AGG | - | chr5.3:51738711-51738730 | MS.gene061943:intron | 30.0% |
| !! | AGAAGTTGATAACGAACAAA+AGG | + | chr5.3:51737901-51737920 | None:intergenic | 30.0% |
| !! | ATTTTTCAACCTTCTGACTT+GGG | + | chr5.3:51737426-51737445 | None:intergenic | 30.0% |
| !! | CTAACTTTAGGGTTTAAGTT+AGG | + | chr5.3:51738441-51738460 | None:intergenic | 30.0% |
| !! | GAAGTATCAGAAAGATTTTC+TGG | - | chr5.3:51738759-51738778 | MS.gene061943:intron | 30.0% |
| AAAATGTTAACGAGACGGTT+GGG | + | chr5.3:51739132-51739151 | None:intergenic | 35.0% | |
| AATACGCAATTGGATCTCAT+CGG | + | chr5.3:51737363-51737382 | None:intergenic | 35.0% | |
| ACATGCACATATTTCTTCTC+CGG | + | chr5.3:51738143-51738162 | None:intergenic | 35.0% | |
| AGAGATAGAGATACCTTGAT+CGG | + | chr5.3:51737231-51737250 | None:intergenic | 35.0% | |
| AGATCCAGCTTTCAAATCTA+AGG | + | chr5.3:51738899-51738918 | None:intergenic | 35.0% | |
| AGGCCTAACCAAATTCTAAA+AGG | + | chr5.3:51738421-51738440 | None:intergenic | 35.0% | |
| AGTGAAAGGGGGTTTAAAAA+TGG | + | chr5.3:51737460-51737479 | None:intergenic | 35.0% | |
| GCAGCAAATGACAATGATAA+AGG | - | chr5.3:51739169-51739188 | MS.gene061943:CDS | 35.0% | |
| GTACTTAGAACAGGGAAAAA+AGG | + | chr5.3:51738036-51738055 | None:intergenic | 35.0% | |
| GTCTTAAGAGTTTGAAGGAA+AGG | - | chr5.3:51738977-51738996 | MS.gene061943:intron | 35.0% | |
| GTTGGAATTGATTGTAGAGA+TGG | - | chr5.3:51737311-51737330 | MS.gene061943:CDS | 35.0% | |
| TAAAATGTTAACGAGACGGT+TGG | + | chr5.3:51739133-51739152 | None:intergenic | 35.0% | |
| TAACAAGTCCAAAGTGAAAG+GGG | + | chr5.3:51737472-51737491 | None:intergenic | 35.0% | |
| TGCTCTTGTTCAATCTTCTT+AGG | + | chr5.3:51739217-51739236 | None:intergenic | 35.0% | |
| ! | ATCAAGCTGGTTTCAATAAC+AGG | + | chr5.3:51738623-51738642 | None:intergenic | 35.0% |
| ! | ATTGGAAGAGTGTACAAATG+TGG | - | chr5.3:51738568-51738587 | MS.gene061943:intron | 35.0% |
| ! | CTAAGTACTGCACAAGAAAT+GGG | - | chr5.3:51738048-51738067 | MS.gene061943:intron | 35.0% |
| ! | CTCAAGTTGTTGCCATATTT+AGG | - | chr5.3:51738842-51738861 | MS.gene061943:intron | 35.0% |
| ! | TCTAAGTACTGCACAAGAAA+TGG | - | chr5.3:51738047-51738066 | MS.gene061943:intron | 35.0% |
| ! | TTGGAAGAGTGTACAAATGT+GGG | - | chr5.3:51738569-51738588 | MS.gene061943:intron | 35.0% |
| ! | TTTTAAACCCCCTTTCACTT+TGG | - | chr5.3:51737461-51737480 | MS.gene061943:intron | 35.0% |
| !! | CATAGGAATTGAGTTGACAT+TGG | - | chr5.3:51738550-51738569 | MS.gene061943:intron | 35.0% |
| !! | CATTTTTCAACCTTCTGACT+TGG | + | chr5.3:51737427-51737446 | None:intergenic | 35.0% |
| AACAAGTCCAAAGTGAAAGG+GGG | + | chr5.3:51737471-51737490 | None:intergenic | 40.0% | |
| AATGGGGAAAGTAAAAAGCC+AGG | + | chr5.3:51738244-51738263 | None:intergenic | 40.0% | |
| ACAATGATAAAGGCTCAAGC+TGG | - | chr5.3:51739179-51739198 | MS.gene061943:intron | 40.0% | |
| AGAGATACCTTGATCGGAAA+GGG | + | chr5.3:51737225-51737244 | None:intergenic | 40.0% | |
| CAATATGGTTCGAACCACTT+TGG | + | chr5.3:51739244-51739263 | None:intergenic | 40.0% | |
| CAATTTCCCAGTGCCAATTT+GGG | + | chr5.3:51737694-51737713 | None:intergenic | 40.0% | |
| CTCAATTCCTATGTGAGAAG+CGG | + | chr5.3:51738543-51738562 | None:intergenic | 40.0% | |
| CTTGTGCAGTACTTAGAACA+GGG | + | chr5.3:51738044-51738063 | None:intergenic | 40.0% | |
| GAAAGGGGGTTTAAAAATGG+TGG | + | chr5.3:51737457-51737476 | None:intergenic | 40.0% | |
| GATTTGAAAGCTGGATCTTG+TGG | - | chr5.3:51738901-51738920 | MS.gene061943:intron | 40.0% | |
| GCAACAAAATCACATCCACT+CGG | + | chr5.3:51737530-51737549 | None:intergenic | 40.0% | |
| TAACAACAGCATGTATGACG+CGG | + | chr5.3:51739007-51739026 | None:intergenic | 40.0% | |
| TAGAGATACCTTGATCGGAA+AGG | + | chr5.3:51737226-51737245 | None:intergenic | 40.0% | |
| TCAATTTCCCAGTGCCAATT+TGG | + | chr5.3:51737695-51737714 | None:intergenic | 40.0% | |
| TCTAGTTGACGTGAGATATC+TGG | - | chr5.3:51738511-51738530 | MS.gene061943:intron | 40.0% | |
| TCTTGTGCAGTACTTAGAAC+AGG | + | chr5.3:51738045-51738064 | None:intergenic | 40.0% | |
| TGTGGGTCTTAAGAGTTTGA+AGG | - | chr5.3:51738972-51738991 | MS.gene061943:intron | 40.0% | |
| TTATGCAAAACCCTTTGGGT+TGG | + | chr5.3:51737762-51737781 | None:intergenic | 40.0% | |
| ! | AGGATTGACGAAGCCTTATA+AGG | - | chr5.3:51738471-51738490 | MS.gene061943:intron | 40.0% |
| ! | ATGGCCTTAGATTTGAAAGC+TGG | - | chr5.3:51738892-51738911 | MS.gene061943:intron | 40.0% |
| !! | AACAAGAGCATCATCCAAAG+TGG | - | chr5.3:51739227-51739246 | MS.gene061943:intron | 40.0% |
| !!! | GAAAGATTTTCTGGAACAGC+TGG | - | chr5.3:51738768-51738787 | MS.gene061943:intron | 40.0% |
| AAATAGGCGCCACAAGTGAA+CGG | + | chr5.3:51737626-51737645 | None:intergenic | 45.0% | |
| AGTACTGCACAAGAAATGGG+CGG | - | chr5.3:51738051-51738070 | MS.gene061943:intron | 45.0% | |
| AGTTCATCGTCCAAGTCCAT+GGG | + | chr5.3:51737389-51737408 | None:intergenic | 45.0% | |
| ATTGAACGTGAGACCTTGAG+AGG | - | chr5.3:51737710-51737729 | MS.gene061943:intron | 45.0% | |
| CACAGAGCTGCTTCTTCTTA+CGG | - | chr5.3:51737190-51737209 | MS.gene061943:intron | 45.0% | |
| CCATGGGATCAATACGCAAT+TGG | + | chr5.3:51737373-51737392 | None:intergenic | 45.0% | |
| GATTGAACCCTCGGATTACT+CGG | + | chr5.3:51737600-51737619 | None:intergenic | 45.0% | |
| GCAGTGCACGTAAAAATGCA+AGG | + | chr5.3:51737998-51738017 | None:intergenic | 45.0% | |
| GTAAGAAGAAGCAGCTCTGT+GGG | + | chr5.3:51737191-51737210 | None:intergenic | 45.0% | |
| GTCTTCATACCCAAGTCAGA+AGG | - | chr5.3:51737414-51737433 | MS.gene061943:intron | 45.0% | |
| TACAGGTTGCTGAGGAGATA+GGG | - | chr5.3:51738728-51738747 | MS.gene061943:intron | 45.0% | |
| TGAAAGCTGGATCTTGTGGA+AGG | - | chr5.3:51738905-51738924 | MS.gene061943:intron | 45.0% | |
| ! | CCAATTGCGTATTGATCCCA+TGG | - | chr5.3:51737370-51737389 | MS.gene061943:intron | 45.0% |
| !!! | ATTATTTTATTATACAATTA+GGG | - | chr5.3:51738932-51738951 | MS.gene061943:intron | 5.0% |
| ACGCAATTGGATCTCATCGG+AGG | + | chr5.3:51737360-51737379 | None:intergenic | 50.0% | |
| AGAAGCAGCTCTGTGGGAAT+TGG | + | chr5.3:51737185-51737204 | None:intergenic | 50.0% | |
| AGAGCTGCTTCTTCTTACGG+CGG | - | chr5.3:51737193-51737212 | MS.gene061943:intron | 50.0% | |
| AGCATGCCCAAATTGGCACT+GGG | - | chr5.3:51737685-51737704 | MS.gene061943:intron | 50.0% | |
| ATGTCCAAGCCAACACCATC+AGG | - | chr5.3:51737736-51737755 | MS.gene061943:CDS | 50.0% | |
| CCAAAGACCGAGTAATCCGA+GGG | - | chr5.3:51737590-51737609 | MS.gene061943:intron | 50.0% | |
| CCTCGGATTACTCGGTCTTT+GGG | + | chr5.3:51737592-51737611 | None:intergenic | 50.0% | |
| CGTAAGAAGAAGCAGCTCTG+TGG | + | chr5.3:51737192-51737211 | None:intergenic | 50.0% | |
| GACAGTACCGCTTCTCACAT+AGG | - | chr5.3:51738533-51738552 | MS.gene061943:intron | 50.0% | |
| GACTTGGACGATGAACTCAC+TGG | - | chr5.3:51737392-51737411 | MS.gene061943:intron | 50.0% | |
| GAGTTCATCGTCCAAGTCCA+TGG | + | chr5.3:51737390-51737409 | None:intergenic | 50.0% | |
| GTACAGGTTGCTGAGGAGAT+AGG | - | chr5.3:51738727-51738746 | MS.gene061943:intron | 50.0% | |
| TAGCATGCCCAAATTGGCAC+TGG | - | chr5.3:51737684-51737703 | MS.gene061943:intron | 50.0% | |
| TCAATCCCACCGTTCACTTG+TGG | - | chr5.3:51737614-51737633 | MS.gene061943:intron | 50.0% | |
| TGCCAATTTGGGCATGCTAG+TGG | + | chr5.3:51737683-51737702 | None:intergenic | 50.0% | |
| ! | AGTTCTGGTACAGGTTGCTG+AGG | - | chr5.3:51738720-51738739 | MS.gene061943:intron | 50.0% |
| ! | GCGTATTGATCCCATGGACT+TGG | - | chr5.3:51737376-51737395 | MS.gene061943:intron | 50.0% |
| ACACCATCAGGCCAACCCAA+AGG | - | chr5.3:51737748-51737767 | MS.gene061943:CDS | 55.0% | |
| AGCAGCTCTGTGGGAATTGG+CGG | + | chr5.3:51737182-51737201 | None:intergenic | 55.0% | |
| CACCATCAGGCCAACCCAAA+GGG | - | chr5.3:51737749-51737768 | MS.gene061943:CDS | 55.0% | |
| CCCAAAGACCGAGTAATCCG+AGG | - | chr5.3:51737589-51737608 | MS.gene061943:intron | 55.0% | |
| CCCTCGGATTACTCGGTCTT+TGG | + | chr5.3:51737593-51737612 | None:intergenic | 55.0% | |
| CGCCACTAGCATGCCCAAAT+TGG | - | chr5.3:51737678-51737697 | MS.gene061943:intron | 55.0% | |
| GAACGGTGGGATTGAACCCT+CGG | + | chr5.3:51737609-51737628 | None:intergenic | 55.0% | |
| GCTTGGACATGCTCCTCTCA+AGG | + | chr5.3:51737726-51737745 | None:intergenic | 55.0% | |
| GGATTACTCGGTCTTTGGGC+CGG | + | chr5.3:51737588-51737607 | None:intergenic | 55.0% | |
| ! | GATGGACTTAGTACCCGACC+CGG | - | chr5.3:51737329-51737348 | MS.gene061943:intron | 55.0% |
| !! | AACCCTTTGGGTTGGCCTGA+TGG | + | chr5.3:51737754-51737773 | None:intergenic | 55.0% |
| !! | TTGGCCTGATGGTGTTGGCT+TGG | + | chr5.3:51737743-51737762 | None:intergenic | 55.0% |
| !! | TTGGGTTGGCCTGATGGTGT+TGG | + | chr5.3:51737748-51737767 | None:intergenic | 55.0% |
| ACTTAGTACCCGACCCGGTG+CGG | - | chr5.3:51737334-51737353 | MS.gene061943:intron | 60.0% | |
| AGGCGCCACAAGTGAACGGT+GGG | + | chr5.3:51737622-51737641 | None:intergenic | 60.0% | |
| GCGCTGTCCCTTTCCGATCA+AGG | - | chr5.3:51737215-51737234 | MS.gene061943:intron | 60.0% | |
| TAGGCGCCACAAGTGAACGG+TGG | + | chr5.3:51737623-51737642 | None:intergenic | 60.0% | |
| ATCTCATCGGAGGCCGCACC+GGG | + | chr5.3:51737350-51737369 | None:intergenic | 65.0% | |
| GATCTCATCGGAGGCCGCAC+CGG | + | chr5.3:51737351-51737370 | None:intergenic | 65.0% | |
| ATCGGAGGCCGCACCGGGTC+GGG | + | chr5.3:51737345-51737364 | None:intergenic | 75.0% | |
| CATCGGAGGCCGCACCGGGT+CGG | + | chr5.3:51737346-51737365 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 51737175 | 51739341 | 51737175 | ID=MS.gene061943 |
| chr5.3 | mRNA | 51737175 | 51739341 | 51737175 | ID=MS.gene061943.t1;Parent=MS.gene061943 |
| chr5.3 | exon | 51739280 | 51739341 | 51739280 | ID=MS.gene061943.t1.exon1;Parent=MS.gene061943.t1 |
| chr5.3 | CDS | 51739280 | 51739341 | 51739280 | ID=cds.MS.gene061943.t1;Parent=MS.gene061943.t1 |
| chr5.3 | exon | 51739071 | 51739188 | 51739071 | ID=MS.gene061943.t1.exon2;Parent=MS.gene061943.t1 |
| chr5.3 | CDS | 51739071 | 51739188 | 51739071 | ID=cds.MS.gene061943.t1;Parent=MS.gene061943.t1 |
| chr5.3 | exon | 51737727 | 51737783 | 51737727 | ID=MS.gene061943.t1.exon3;Parent=MS.gene061943.t1 |
| chr5.3 | CDS | 51737727 | 51737783 | 51737727 | ID=cds.MS.gene061943.t1;Parent=MS.gene061943.t1 |
| chr5.3 | exon | 51737268 | 51737343 | 51737268 | ID=MS.gene061943.t1.exon4;Parent=MS.gene061943.t1 |
| chr5.3 | CDS | 51737268 | 51737343 | 51737268 | ID=cds.MS.gene061943.t1;Parent=MS.gene061943.t1 |
| chr5.3 | exon | 51737175 | 51737188 | 51737175 | ID=MS.gene061943.t1.exon5;Parent=MS.gene061943.t1 |
| chr5.3 | CDS | 51737175 | 51737188 | 51737175 | ID=cds.MS.gene061943.t1;Parent=MS.gene061943.t1 |
| Gene Sequence |
| Protein sequence |
