AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055358


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055358.t1 MTR_8g005295 92.427 515 36 1 1 515 1 512 0.0 983
MS.gene055358.t1 MTR_8g005285 87.791 516 46 1 1 516 1 499 0.0 931
MS.gene055358.t1 MTR_8g005325 50.398 502 179 9 19 515 38 474 8.77e-162 468
MS.gene055358.t1 MTR_8g005235 49.603 504 179 11 19 515 9 444 6.64e-159 459
MS.gene055358.t1 MTR_0209s0060 46.263 495 181 13 19 508 11 425 4.66e-134 395
MS.gene055358.t1 MTR_0209s0030 46.263 495 181 13 19 508 11 425 4.66e-134 395
MS.gene055358.t1 MTR_8g006525 46.245 506 188 13 12 512 4 430 1.36e-132 392
MS.gene055358.t1 MTR_8g005265 45.233 493 192 13 36 514 27 455 4.29e-128 381
MS.gene055358.t1 MTR_8g005225 42.557 524 224 12 1 513 1 458 1.97e-122 367
MS.gene055358.t1 MTR_3g079390 33.468 496 247 16 17 503 20 441 3.22e-64 216
MS.gene055358.t1 MTR_6g010920 31.557 488 220 17 32 508 21 405 1.68e-61 207
MS.gene055358.t1 MTR_6g009590 30.346 491 226 16 22 497 7 396 6.63e-60 203
MS.gene055358.t1 MTR_6g011050 30.297 472 218 14 36 497 24 394 4.52e-58 198
MS.gene055358.t1 MTR_4g112660 38.824 340 118 9 188 510 90 356 2.57e-57 195
MS.gene055358.t1 MTR_4g112660 46.429 84 41 3 36 118 6 86 6.87e-15 76.6
MS.gene055358.t1 MTR_6g009610 30.947 475 226 14 29 497 18 396 9.50e-57 195
MS.gene055358.t1 MTR_6g011060 29.555 494 236 15 25 503 14 410 7.18e-56 193
MS.gene055358.t1 MTR_0024s0080 30.538 465 218 14 38 497 27 391 2.86e-52 183
MS.gene055358.t1 MTR_3g107590 30.737 475 224 14 34 496 24 405 8.80e-52 182
MS.gene055358.t1 MTR_6g010890 29.447 506 238 18 25 508 14 422 2.02e-51 181
MS.gene055358.t1 MTR_6g010810 29.424 486 229 16 35 508 21 404 5.91e-49 174
MS.gene055358.t1 MTR_6g009170 29.577 497 230 17 22 496 7 405 1.98e-48 173
MS.gene055358.t1 MTR_2g036320 27.447 470 258 13 38 505 69 457 1.15e-43 162
MS.gene055358.t1 MTR_2g041180 27.331 472 261 13 36 505 50 441 4.56e-42 157
MS.gene055358.t1 MTR_2g035640 27.189 434 219 9 73 503 1 340 4.42e-38 143
MS.gene055358.t1 MTR_5g086340 25.684 475 272 10 37 508 33 429 3.65e-34 134
MS.gene055358.t1 MTR_5g016570 27.311 476 258 14 32 488 97 503 2.74e-32 130
MS.gene055358.t1 MTR_6g010850 28.846 416 187 15 109 514 33 349 7.60e-32 126
MS.gene055358.t1 MTR_7g011980 34.211 190 101 3 316 503 166 333 1.63e-25 107
MS.gene055358.t1 MTR_7g011980 31.579 171 66 4 29 199 18 137 6.25e-17 82.8
MS.gene055358.t1 MTR_7g060310 24.540 489 290 15 46 503 39 479 2.69e-23 103
MS.gene055358.t1 MTR_7g059540 22.593 509 272 15 38 503 29 458 5.43e-23 102
MS.gene055358.t1 MTR_7g059540 22.481 516 274 16 38 503 28 467 4.18e-22 99.8
MS.gene055358.t1 MTR_6g009580 30.698 215 118 5 289 496 29 219 1.20e-21 94.4
MS.gene055358.t1 MTR_7g060260 22.532 466 256 12 38 488 28 403 4.99e-19 90.1
MS.gene055358.t1 MTR_7g060320 22.934 484 270 16 38 488 28 441 2.28e-18 88.2
MS.gene055358.t1 MTR_7g060115 22.822 482 269 15 53 505 44 451 3.23e-18 87.8
MS.gene055358.t1 MTR_5g086230 30.939 181 103 4 37 213 29 191 7.81e-18 82.4
MS.gene055358.t1 MTR_7g059525 28.877 187 113 2 318 503 108 275 6.19e-17 81.6
MS.gene055358.t1 MTR_0182s0060 24.852 507 303 17 40 503 37 508 8.98e-17 83.6
MS.gene055358.t1 MTR_7g059520 30.409 171 99 3 318 487 5 156 1.28e-16 78.2
MS.gene055358.t1 MTR_6g009600 32.593 135 67 2 318 451 23 134 1.36e-16 77.4
MS.gene055358.t1 MTR_7g060080 32.432 148 95 2 363 505 42 189 1.87e-16 78.2
MS.gene055358.t1 MTR_5g087580 25.980 204 126 3 316 518 41 220 3.94e-16 78.2
MS.gene055358.t1 MTR_7g446270 23.780 492 273 20 38 488 31 461 9.39e-16 80.1
MS.gene055358.t1 MTR_7g060220 22.979 470 260 14 38 488 27 413 3.43e-15 78.2
MS.gene055358.t1 MTR_7g060840 31.333 150 92 3 367 515 287 426 5.09e-15 77.8
MS.gene055358.t1 MTR_4g009340 31.176 170 104 4 36 205 42 198 6.31e-15 77.8
MS.gene055358.t1 MTR_4g009340 27.841 176 103 4 315 489 376 528 7.51e-11 65.1
MS.gene055358.t1 MTR_7g059480 32.394 142 95 1 363 503 624 765 6.39e-15 78.2
MS.gene055358.t1 MTR_5g086260 27.805 205 118 6 318 518 136 314 6.48e-15 76.3
MS.gene055358.t1 MTR_7g060020 33.803 142 90 3 367 505 291 431 9.26e-15 77.0
MS.gene055358.t1 MTR_4g009620 31.765 170 102 4 36 205 42 197 7.80e-14 74.3
MS.gene055358.t1 MTR_4g009590 27.895 190 124 4 36 225 42 218 1.15e-13 73.9
MS.gene055358.t1 MTR_4g009590 29.104 134 94 1 373 505 411 544 9.20e-12 67.8
MS.gene055358.t1 MTR_8g042170 31.788 151 89 2 367 503 299 449 2.30e-13 72.8
MS.gene055358.t1 MTR_7g060160 33.333 147 84 5 367 505 263 403 4.19e-13 71.6
MS.gene055358.t1 MTR_2g036310 29.927 137 93 2 371 505 16 151 1.34e-12 66.2
MS.gene055358.t1 MTR_7g017620 28.788 198 126 6 4 200 9 192 2.50e-12 69.7
MS.gene055358.t1 MTR_7g017620 30.075 133 91 2 371 502 399 530 3.52e-11 65.9
MS.gene055358.t1 MTR_8g042830 21.965 346 209 10 184 518 124 419 3.58e-12 68.6
MS.gene055358.t1 MTR_7g067750 27.111 225 139 9 2 218 26 233 4.39e-12 68.9
MS.gene055358.t1 MTR_7g059510 21.930 342 206 10 184 506 123 422 5.15e-12 68.2
MS.gene055358.t1 MTR_7g059810 24.249 466 248 18 46 488 38 421 1.29e-11 67.0
MS.gene055358.t1 MTR_3g466740 27.320 194 122 6 37 230 31 205 2.58e-11 66.2
MS.gene055358.t1 MTR_7g067600 27.273 176 114 3 37 209 29 193 6.64e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055358.t1 AT2G44930 30.162 494 239 9 36 508 84 492 1.22e-55 195
MS.gene055358.t1 AT3G60470 29.870 539 269 15 38 508 34 531 8.36e-55 193
MS.gene055358.t1 AT2G28580 28.921 491 244 10 36 508 41 444 5.09e-52 184
MS.gene055358.t1 AT2G28580 28.921 491 244 10 36 508 109 512 1.38e-51 184
MS.gene055358.t1 AT2G28580 28.803 493 242 11 36 508 123 526 1.56e-51 184
MS.gene055358.t1 AT2G28580 29.167 480 240 9 36 508 109 495 3.24e-51 183
MS.gene055358.t1 AT2G28580 29.046 482 238 10 36 508 123 509 4.45e-51 183
MS.gene055358.t1 AT4G31980 27.660 470 231 12 36 496 293 662 9.74e-47 173
MS.gene055358.t1 AT5G11290 25.311 482 266 14 24 503 22 411 5.50e-40 150
MS.gene055358.t1 AT3G50150 27.542 472 270 11 38 505 92 495 3.16e-39 150
MS.gene055358.t1 AT1G67150 27.178 482 246 12 35 503 5 394 5.94e-39 147
MS.gene055358.t1 AT1G67150 27.178 482 246 12 35 503 5 394 5.94e-39 147
MS.gene055358.t1 AT2G36430 25.055 455 259 11 36 488 45 419 1.16e-38 147
MS.gene055358.t1 AT1G67150 26.955 486 246 12 35 503 5 398 2.17e-38 145
MS.gene055358.t1 AT3G50170 25.434 519 306 12 2 503 69 523 1.80e-37 145
MS.gene055358.t1 AT3G47250 26.176 489 273 13 27 503 52 464 1.18e-36 142
MS.gene055358.t1 AT3G47250 26.176 489 273 13 27 503 52 464 1.18e-36 142
MS.gene055358.t1 AT3G47250 26.176 489 273 13 27 503 52 464 1.18e-36 142
MS.gene055358.t1 AT3G47210 28.166 458 220 12 25 467 82 445 1.73e-35 139
MS.gene055358.t1 AT3G50140 25.833 480 275 13 38 505 115 525 7.50e-34 135
MS.gene055358.t1 AT3G50120 26.383 470 283 12 38 503 105 515 5.29e-33 132
MS.gene055358.t1 AT2G28580 27.488 422 197 11 36 437 123 455 7.18e-33 131
MS.gene055358.t1 AT3G50130 26.593 455 268 13 38 488 141 533 4.66e-31 127
MS.gene055358.t1 AT3G50180 25.667 487 259 16 32 503 174 572 8.37e-29 120
MS.gene055358.t1 AT3G47200 25.261 479 262 13 25 488 35 432 2.18e-27 115
MS.gene055358.t1 AT3G47200 25.261 479 262 13 25 488 35 432 2.18e-27 115
MS.gene055358.t1 AT5G22540 23.226 465 257 13 36 488 31 407 8.47e-26 110
MS.gene055358.t1 AT3G44710 24.280 486 306 14 36 503 47 488 4.63e-25 108
MS.gene055358.t1 AT3G50190 23.789 475 258 13 38 503 98 477 7.20e-23 102
MS.gene055358.t1 AT5G11290 22.864 433 241 14 73 503 1 342 1.68e-22 99.4
MS.gene055358.t1 AT1G65985 34.054 185 79 4 38 204 16 175 3.91e-20 93.6
MS.gene055358.t1 AT1G65985 37.903 124 76 1 368 490 304 427 1.82e-16 82.4
MS.gene055358.t1 AT1G65985 34.054 185 79 4 38 204 16 175 3.91e-20 93.6
MS.gene055358.t1 AT1G65985 37.903 124 76 1 368 490 304 427 1.82e-16 82.4
MS.gene055358.t1 AT3G50170 29.439 214 121 5 2 205 69 262 1.17e-19 92.0
MS.gene055358.t1 AT5G22550 31.579 209 119 8 2 206 9 197 2.04e-19 91.7
MS.gene055358.t1 AT3G50160 31.285 179 103 4 32 210 100 258 1.81e-18 89.0
MS.gene055358.t1 AT3G50160 27.679 224 133 3 286 503 285 485 8.35e-17 83.6
MS.gene055358.t1 AT1G67150 29.947 187 107 3 318 503 188 351 2.50e-18 87.0
MS.gene055358.t1 AT1G67150 31.694 183 94 5 35 207 5 166 2.97e-15 77.8
MS.gene055358.t1 AT3G50150 31.429 175 99 4 38 210 92 247 1.03e-16 83.2
MS.gene055358.t1 AT3G50140 31.548 168 95 4 38 205 115 262 7.44e-16 80.1
MS.gene055358.t1 AT5G22560 26.882 186 103 4 36 207 47 213 3.01e-15 79.0
MS.gene055358.t1 AT3G50190 27.717 184 110 5 38 221 98 258 6.14e-13 70.9
MS.gene055358.t1 AT3G50190 27.717 184 110 5 38 221 98 258 6.14e-13 70.9
MS.gene055358.t1 AT3G50190 27.717 184 110 5 38 221 98 258 8.10e-13 70.1
MS.gene055358.t1 AT3G02645 32.203 118 79 1 373 489 380 497 8.97e-13 71.2
MS.gene055358.t1 AT3G44700 26.389 144 99 4 5 143 16 157 8.44e-11 62.4

Find 59 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAGCATTATCAGAATATT+TGG 0.154201 8.2:+83449735 MS.gene055358:CDS
CTTGATACTGACATTGTTCT+AGG 0.157660 8.2:-83449514 None:intergenic
ATTAACTTTGTTACTGTTCT+TGG 0.162375 8.2:-83449290 None:intergenic
ACCATTTCAAAGCGCGTCTA+AGG 0.318480 8.2:+83449435 MS.gene055358:CDS
ACGTGAAACTAAGCTTGTTT+TGG 0.326591 8.2:+83449055 MS.gene055358:CDS
GAAACATAATTGCATATATA+AGG 0.329067 8.2:-83449542 None:intergenic
GACTTTGTAGTTCTTGATCA+TGG 0.348123 8.2:-83448625 None:intergenic
TCTTTATTTCCAAGGTGAAT+TGG 0.350401 8.2:-83448525 None:intergenic
ATCAAATCAGTGAAATGTTT+AGG 0.353279 8.2:-83449203 None:intergenic
CTGCTAAACTTAACTCTTCA+AGG 0.360388 8.2:-83448422 None:intergenic
TTACCTTCCAGCTGATTTAA+CGG 0.361070 8.2:+83449235 MS.gene055358:CDS
AACATTTCACTGATTTGATA+AGG 0.390830 8.2:+83449207 MS.gene055358:CDS
ACTCCTCAATTAATCTCAAT+TGG 0.392658 8.2:+83448501 MS.gene055358:CDS
GTAACAAAGTTAATAGATTC+TGG 0.396787 8.2:+83449299 MS.gene055358:CDS
AAGAAACCGTTCATGGAAAT+CGG 0.400354 8.2:+83448770 MS.gene055358:CDS
GAAGTGGCAGTGCTTGTTAA+TGG 0.401978 8.2:+83449653 MS.gene055358:CDS
ATAGACGCTCATAGAAGAAA+TGG 0.406927 8.2:-83448584 None:intergenic
TCCTTAGACGCGCTTTGAAA+TGG 0.415205 8.2:-83449436 None:intergenic
TCTAAATCCGTTAAATCAGC+TGG 0.442093 8.2:-83449242 None:intergenic
AGCAATAACCATAGGTTTCA+AGG 0.443493 8.2:+83449179 MS.gene055358:CDS
CAGAGAAAATAACTCAGAAA+TGG 0.447228 8.2:-83449380 None:intergenic
AATCAACATCAACTTGTGTA+TGG 0.449318 8.2:-83449583 None:intergenic
ATCTGAAACTGAATATGAAA+TGG 0.454211 8.2:+83448374 MS.gene055358:CDS
GTTTAGGACCTTGAAACCTA+TGG 0.455366 8.2:-83449187 None:intergenic
ACAAGTTGATGTTGATTTGT+TGG 0.455972 8.2:+83449589 MS.gene055358:CDS
AGAGCTAGTTCTACTTTGGT+TGG 0.457619 8.2:+83449806 MS.gene055358:CDS
GGAAGTGATTGTGCATGAAA+TGG 0.461128 8.2:+83449619 MS.gene055358:CDS
GGACCAATTGAGATTAATTG+AGG 0.464532 8.2:-83448504 None:intergenic
TTGGAGAGCTAGTTCTACTT+TGG 0.466290 8.2:+83449802 MS.gene055358:CDS
AGTGGCTTAATTGGTGATGT+TGG 0.477221 8.2:+83449110 MS.gene055358:CDS
GGCTTAATTGGTGATGTTGG+TGG 0.479529 8.2:+83449113 MS.gene055358:CDS
GTTGAAGTTCTTTATTTCCA+AGG 0.495312 8.2:-83448533 None:intergenic
TCTAAGGATTCCGCAGTTGA+AGG 0.499213 8.2:+83449451 MS.gene055358:CDS
AGCAGATTGTAGCATCTACA+AGG 0.504878 8.2:+83448440 MS.gene055358:CDS
ATTACATTCTAACACAAGCT+TGG 0.511928 8.2:+83448856 MS.gene055358:CDS
TGTTGATTTGTTGGTGGAGA+AGG 0.512953 8.2:+83449598 MS.gene055358:CDS
TTGATACTGACATTGTTCTA+GGG 0.522905 8.2:-83449513 None:intergenic
ATGTTTCAATCTAAATGACT+TGG 0.523292 8.2:-83448826 None:intergenic
GAAGTGATTGTGCATGAAAT+GGG 0.523677 8.2:+83449620 MS.gene055358:CDS
TTAACGGATTTAGAAAAGAG+TGG 0.543465 8.2:+83449251 MS.gene055358:CDS
CACCAACCACAATGCAGCCA+TGG 0.546124 8.2:-83449765 None:intergenic
TGGTTCAAACATGAAAATGA+AGG 0.548134 8.2:-83449416 None:intergenic
TTAATTGGTGATGTTGGTGG+TGG 0.553225 8.2:+83449116 MS.gene055358:CDS
TCAATTGGTCCAATTCACCT+TGG 0.558480 8.2:+83448516 MS.gene055358:CDS
ACCACAATGCAGCCATGGTA+CGG 0.571593 8.2:-83449760 None:intergenic
AGTTGATGTTGATTTGTTGG+TGG 0.572996 8.2:+83449592 MS.gene055358:CDS
ATGTATCCGATTTCCATGAA+CGG 0.580945 8.2:-83448776 None:intergenic
TGGTCTTTGTAAACATGTTG+TGG 0.582048 8.2:+83449673 MS.gene055358:CDS
AATCTATGAGCAATAACCAT+AGG 0.583238 8.2:+83449171 MS.gene055358:CDS
GACATTGTTCTAGGGCAATG+AGG 0.593451 8.2:-83449505 None:intergenic
GGCTCAGCAAAAGCATCACA+AGG 0.605591 8.2:+83448877 MS.gene055358:CDS
TACCATGGCTGCATTGTGGT+TGG 0.611964 8.2:+83449763 MS.gene055358:CDS
AATCCGTTAAATCAGCTGGA+AGG 0.622325 8.2:-83449238 None:intergenic
AATGGGAAGTGATAAAGAAG+TGG 0.638138 8.2:+83449637 MS.gene055358:CDS
GAATATTTGGAACCGTACCA+TGG 0.643141 8.2:+83449748 MS.gene055358:CDS
TTTCTGGTAGAAGAGAACTC+TGG 0.666213 8.2:-83449873 None:intergenic
GTGTGATCAACCTTCAACTG+CGG 0.710202 8.2:-83449461 None:intergenic
GCTCAGCAAAAGCATCACAA+GGG 0.717992 8.2:+83448878 MS.gene055358:CDS
ACCGTACCATGGCTGCATTG+TGG 0.722473 8.2:+83449759 MS.gene055358:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGCATTATCAGAATATT+TGG + chr8.2:83449735-83449754 MS.gene055358:CDS 20.0%
!! GAAACATAATTGCATATATA+AGG - chr8.2:83449545-83449564 None:intergenic 20.0%
!!! AAATTTTTCTTTGCTTATGT+TGG - chr8.2:83448703-83448722 None:intergenic 20.0%
!!! AAGAAATATTATTTTGTGAG+TGG + chr8.2:83449092-83449111 MS.gene055358:CDS 20.0%
!!! AATTTTTCTTTGCTTATGTT+GGG - chr8.2:83448702-83448721 None:intergenic 20.0%
!!! TTTATCAGAATGTTTTTTCT+TGG - chr8.2:83449153-83449172 None:intergenic 20.0%
! ATCAAATCAGTGAAATGTTT+AGG - chr8.2:83449206-83449225 None:intergenic 25.0%
! ATGTTTCAATCTAAATGACT+TGG - chr8.2:83448829-83448848 None:intergenic 25.0%
! ATTAACTTTGTTACTGTTCT+TGG - chr8.2:83449293-83449312 None:intergenic 25.0%
! CATAAGCAAAGAAAAATTTG+TGG + chr8.2:83448704-83448723 MS.gene055358:CDS 25.0%
! GTAACAAAGTTAATAGATTC+TGG + chr8.2:83449299-83449318 MS.gene055358:CDS 25.0%
!! ATCTGAAACTGAATATGAAA+TGG + chr8.2:83448374-83448393 MS.gene055358:CDS 25.0%
!! ATTTGTGGAAACAATTTTGT+TGG + chr8.2:83448719-83448738 MS.gene055358:CDS 25.0%
!! CAAGATCAAGAAAACTTTTA+TGG - chr8.2:83448992-83449011 None:intergenic 25.0%
!!! AACATTTCACTGATTTGATA+AGG + chr8.2:83449207-83449226 MS.gene055358:CDS 25.0%
AATCAACATCAACTTGTGTA+TGG - chr8.2:83449586-83449605 None:intergenic 30.0%
AATCTATGAGCAATAACCAT+AGG + chr8.2:83449171-83449190 MS.gene055358:CDS 30.0%
ACTCCTCAATTAATCTCAAT+TGG + chr8.2:83448501-83448520 MS.gene055358:CDS 30.0%
AGATTCATCAGCACAAAAAA+AGG - chr8.2:83448930-83448949 None:intergenic 30.0%
ATTACATTCTAACACAAGCT+TGG + chr8.2:83448856-83448875 MS.gene055358:CDS 30.0%
CAATGCAACAACACAAAAAA+AGG + chr8.2:83448556-83448575 MS.gene055358:CDS 30.0%
CAGAGAAAATAACTCAGAAA+TGG - chr8.2:83449383-83449402 None:intergenic 30.0%
TGGTTCAAACATGAAAATGA+AGG - chr8.2:83449419-83449438 None:intergenic 30.0%
TTGATACTGACATTGTTCTA+GGG - chr8.2:83449516-83449535 None:intergenic 30.0%
! ACACAACAGAATGTGTTTTA+AGG + chr8.2:83449480-83449499 MS.gene055358:CDS 30.0%
! GTTGAAGTTCTTTATTTCCA+AGG - chr8.2:83448536-83448555 None:intergenic 30.0%
! TATTTTGTGAGTGGCTTAAT+TGG + chr8.2:83449101-83449120 MS.gene055358:CDS 30.0%
! TCTTTATTTCCAAGGTGAAT+TGG - chr8.2:83448528-83448547 None:intergenic 30.0%
! TTTTGTTAAGAAACCGTTCA+TGG + chr8.2:83448763-83448782 MS.gene055358:CDS 30.0%
!! AAGCTTCTTGTTTCACTTTT+CGG - chr8.2:83448479-83448498 None:intergenic 30.0%
!! ACAAGTTGATGTTGATTTGT+TGG + chr8.2:83449589-83449608 MS.gene055358:CDS 30.0%
!! TTAACGGATTTAGAAAAGAG+TGG + chr8.2:83449251-83449270 MS.gene055358:CDS 30.0%
!!! CTTTTTTTGTGTTGTTGCAT+TGG - chr8.2:83448558-83448577 None:intergenic 30.0%
AAGAAACCGTTCATGGAAAT+CGG + chr8.2:83448770-83448789 MS.gene055358:CDS 35.0%
AATGGGAAGTGATAAAGAAG+TGG + chr8.2:83449637-83449656 MS.gene055358:CDS 35.0%
AGCAATAACCATAGGTTTCA+AGG + chr8.2:83449179-83449198 MS.gene055358:CDS 35.0%
ATAGACGCTCATAGAAGAAA+TGG - chr8.2:83448587-83448606 None:intergenic 35.0%
ATGTATCCGATTTCCATGAA+CGG - chr8.2:83448779-83448798 None:intergenic 35.0%
CTGCTAAACTTAACTCTTCA+AGG - chr8.2:83448425-83448444 None:intergenic 35.0%
CTTGATACTGACATTGTTCT+AGG - chr8.2:83449517-83449536 None:intergenic 35.0%
GAAGTGATTGTGCATGAAAT+GGG + chr8.2:83449620-83449639 MS.gene055358:CDS 35.0%
GACTTTGTAGTTCTTGATCA+TGG - chr8.2:83448628-83448647 None:intergenic 35.0%
GGACCAATTGAGATTAATTG+AGG - chr8.2:83448507-83448526 None:intergenic 35.0%
TCTAAATCCGTTAAATCAGC+TGG - chr8.2:83449245-83449264 None:intergenic 35.0%
TGGTCTTTGTAAACATGTTG+TGG + chr8.2:83449673-83449692 MS.gene055358:CDS 35.0%
! TTACCTTCCAGCTGATTTAA+CGG + chr8.2:83449235-83449254 MS.gene055358:CDS 35.0%
!! ACGTGAAACTAAGCTTGTTT+TGG + chr8.2:83449055-83449074 MS.gene055358:CDS 35.0%
!! AGTTGATGTTGATTTGTTGG+TGG + chr8.2:83449592-83449611 MS.gene055358:CDS 35.0%
!! CTGAGTTATTTTCTCTGCTT+AGG + chr8.2:83449386-83449405 MS.gene055358:CDS 35.0%
!! TGGTGTATTTTAGAGATGCT+TGG + chr8.2:83449783-83449802 MS.gene055358:CDS 35.0%
!!! CTTCTTTTTTGTCGTCGTTA+GGG - chr8.2:83448968-83448987 None:intergenic 35.0%
!!! GTGAGTTTTGAGAAAGTTGT+GGG + chr8.2:83449323-83449342 MS.gene055358:CDS 35.0%
!!! TCTTCTTTTTTGTCGTCGTT+AGG - chr8.2:83448969-83448988 None:intergenic 35.0%
!!! TGAGTTTTGAGAAAGTTGTG+GGG + chr8.2:83449324-83449343 MS.gene055358:CDS 35.0%
!!! TGTGAGTTTTGAGAAAGTTG+TGG + chr8.2:83449322-83449341 MS.gene055358:CDS 35.0%
AATCCGTTAAATCAGCTGGA+AGG - chr8.2:83449241-83449260 None:intergenic 40.0%
AGCAGATTGTAGCATCTACA+AGG + chr8.2:83448440-83448459 MS.gene055358:CDS 40.0%
GGAAGTGATTGTGCATGAAA+TGG + chr8.2:83449619-83449638 MS.gene055358:CDS 40.0%
TCAATTGGTCCAATTCACCT+TGG + chr8.2:83448516-83448535 MS.gene055358:CDS 40.0%
! CACAAGGGACTTGATTTTGT+TGG + chr8.2:83448893-83448912 MS.gene055358:CDS 40.0%
! GAATATTTGGAACCGTACCA+TGG + chr8.2:83449748-83449767 MS.gene055358:CDS 40.0%
! GTTTAGGACCTTGAAACCTA+TGG - chr8.2:83449190-83449209 None:intergenic 40.0%
! TTTCTGGTAGAAGAGAACTC+TGG - chr8.2:83449876-83449895 None:intergenic 40.0%
!! AGAGCTAGTTCTACTTTGGT+TGG + chr8.2:83449806-83449825 MS.gene055358:CDS 40.0%
!! AGTGGCTTAATTGGTGATGT+TGG + chr8.2:83449110-83449129 MS.gene055358:CDS 40.0%
!! TGTTGATTTGTTGGTGGAGA+AGG + chr8.2:83449598-83449617 MS.gene055358:CDS 40.0%
!! TTAATTGGTGATGTTGGTGG+TGG + chr8.2:83449116-83449135 MS.gene055358:CDS 40.0%
!! TTCACTTTTCGGAGATTGTG+AGG - chr8.2:83448468-83448487 None:intergenic 40.0%
!! TTGGAGAGCTAGTTCTACTT+TGG + chr8.2:83449802-83449821 MS.gene055358:CDS 40.0%
!!! GTTGGATGCTGTTTTCATCA+TGG + chr8.2:83448737-83448756 MS.gene055358:CDS 40.0%
ACCATTTCAAAGCGCGTCTA+AGG + chr8.2:83449435-83449454 MS.gene055358:CDS 45.0%
GTGTGATCAACCTTCAACTG+CGG - chr8.2:83449464-83449483 None:intergenic 45.0%
TCTAAGGATTCCGCAGTTGA+AGG + chr8.2:83449451-83449470 MS.gene055358:CDS 45.0%
! GAAGTGGCAGTGCTTGTTAA+TGG + chr8.2:83449653-83449672 MS.gene055358:CDS 45.0%
!! GACATTGTTCTAGGGCAATG+AGG - chr8.2:83449508-83449527 None:intergenic 45.0%
!! GCTCAGCAAAAGCATCACAA+GGG + chr8.2:83448878-83448897 MS.gene055358:CDS 45.0%
!! GGCTTAATTGGTGATGTTGG+TGG + chr8.2:83449113-83449132 MS.gene055358:CDS 45.0%
!! TCCTTAGACGCGCTTTGAAA+TGG - chr8.2:83449439-83449458 None:intergenic 45.0%
ACCACAATGCAGCCATGGTA+CGG - chr8.2:83449763-83449782 None:intergenic 50.0%
TACCATGGCTGCATTGTGGT+TGG + chr8.2:83449763-83449782 MS.gene055358:CDS 50.0%
!! GGCTCAGCAAAAGCATCACA+AGG + chr8.2:83448877-83448896 MS.gene055358:CDS 50.0%
ACCGTACCATGGCTGCATTG+TGG + chr8.2:83449759-83449778 MS.gene055358:CDS 55.0%
CACCAACCACAATGCAGCCA+TGG - chr8.2:83449768-83449787 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 83448342 83449910 83448342 ID=MS.gene055358
chr8.2 mRNA 83448342 83449910 83448342 ID=MS.gene055358.t1;Parent=MS.gene055358
chr8.2 exon 83448342 83449910 83448342 ID=MS.gene055358.t1.exon1;Parent=MS.gene055358.t1
chr8.2 CDS 83448342 83449910 83448342 ID=cds.MS.gene055358.t1;Parent=MS.gene055358.t1
Gene Sequence

>MS.gene055358

ATGGCACATGCTAATACTTCTGTTGATGCTTTATCTGAAACTGAATATGAAATGGTGAAACACATCATTGACGTTGAAGTCCTTGAAGAGTTAAGTTTAGCAGATTGTAGCATCTACAAGGTTCCTCACAATCTCCGAAAAGTGAAACAAGAAGCTTACACTCCTCAATTAATCTCAATTGGTCCAATTCACCTTGGAAATAAAGAACTTCAACCAATGCAACAACACAAAAAAAGGTATTTCCATTTCTTCTATGAGCGTCTATCTCAATTCAATCAACAATCCATGATCAAGAACTACAAAGTCTATCTTGAAAACAAAGAACAAGAAATAAGAAAATGTTATGCAGAGAAATTTCCCAACATAAGCAAAGAAAAATTTGTGGAAACAATTTTGTTGGATGCTGTTTTCATCATGGAGCTTTTGTTAAGAAACCGTTCATGGAAATCGGATACATCAAAACATGAACATGAATACAAGCAATCCAAGTCATTTAGATTGAAACATAGTGATGATTACATTCTAACACAAGCTTGGCTCAGCAAAAGCATCACAAGGGACTTGATTTTGTTGGAAAATCAGATACCTTTTTTTGTGCTGATGAATCTTTACGATACTGTCGTCCCTAACGACGACAAAAAAGAAGACCATAAAAGTTTTCTTGATCTTGCACTTGAGTATTTTGCATTCTACGACACTCAGAAATCGTCATCACGTGAAACTAAGCTTGTTTTGGATAAGAATCAGACAAAGAAATATTATTTTGTGAGTGGCTTAATTGGTGATGTTGGTGGTGGTAATTCAGTTTCCAAGAAAAAACATTCTGATAAATCTATGAGCAATAACCATAGGTTTCAAGGTCCTAAACATTTCACTGATTTGATAAGGTTTTTTTACCTTCCAGCTGATTTAACGGATTTAGAAAAGAGTGGTTGTTCTCATACTTTTCCAAGAACAGTAACAAAGTTAATAGATTCTGGTGTGAGTTTTGAGAAAGTTGTGGGGAGAAGATTGCTAGAAATAACATTTGAGAAGAAACCATTTCTGAGTTATTTTCTCTGCTTAGGTTGTTTACCTTCATTTTCATGTTTGAACCATTTCAAAGCGCGTCTAAGGATTCCGCAGTTGAAGGTTGATCACACAACAGAATGTGTTTTAAGGAACCTCATTGCCCTAGAACAATGTCAGTATCAAGAACAACCTTATATATGCAATTATGTTTCACTTGTTGATTCTCTTATCCATACACAAGTTGATGTTGATTTGTTGGTGGAGAAGGAAGTGATTGTGCATGAAATGGGAAGTGATAAAGAAGTGGCAGTGCTTGTTAATGGTCTTTGTAAACATGTTGTGGTGAATTCAACTTGTTACTATGATATTATTAATGAGCTTAATAAGCATTATCAGAATATTTGGAACCGTACCATGGCTGCATTGTGGTTGGTGTATTTTAGAGATGCTTGGAGAGCTAGTTCTACTTTGGTTGGAATTGCTTTTCTTGTTTACACAGCATTCAACTTTGTACGTCTTGCCAGAGTTCTCTTCTACCAGAAACTTAAAAATGTATAA

Protein sequence

>MS.gene055358.t1

MAHANTSVDALSETEYEMVKHIIDVEVLEELSLADCSIYKVPHNLRKVKQEAYTPQLISIGPIHLGNKELQPMQQHKKRYFHFFYERLSQFNQQSMIKNYKVYLENKEQEIRKCYAEKFPNISKEKFVETILLDAVFIMELLLRNRSWKSDTSKHEHEYKQSKSFRLKHSDDYILTQAWLSKSITRDLILLENQIPFFVLMNLYDTVVPNDDKKEDHKSFLDLALEYFAFYDTQKSSSRETKLVLDKNQTKKYYFVSGLIGDVGGGNSVSKKKHSDKSMSNNHRFQGPKHFTDLIRFFYLPADLTDLEKSGCSHTFPRTVTKLIDSGVSFEKVVGRRLLEITFEKKPFLSYFLCLGCLPSFSCLNHFKARLRIPQLKVDHTTECVLRNLIALEQCQYQEQPYICNYVSLVDSLIHTQVDVDLLVEKEVIVHEMGSDKEVAVLVNGLCKHVVVNSTCYYDIINELNKHYQNIWNRTMAALWLVYFRDAWRASSTLVGIAFLVYTAFNFVRLARVLFYQKLKNV