Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06232.t1 | XP_003602791.2 | 87.4 | 277 | 30 | 2 | 41 | 317 | 31 | 302 | 1.60E-69 | 273.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06232.t1 | Q9C5D3 | 77.2 | 162 | 36 | 1 | 47 | 207 | 76 | 237 | 6.3e-46 | 186.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06232.t1 | G7J3E1 | 87.4 | 277 | 30 | 2 | 41 | 317 | 31 | 302 | 1.2e-69 | 273.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055508 | MS.gene06232 | 0.989739 | 1.96E-179 | -1.69E-46 |
| MS.gene057392 | MS.gene06232 | 0.801664 | 8.09E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06232.t1 | MTR_3g099040 | 91.901 | 284 | 18 | 2 | 34 | 317 | 24 | 302 | 3.71e-115 | 335 |
| MS.gene06232.t1 | MTR_3g099030 | 65.614 | 285 | 57 | 3 | 33 | 317 | 23 | 266 | 2.16e-96 | 286 |
| MS.gene06232.t1 | MTR_8g096700 | 53.177 | 299 | 89 | 8 | 43 | 317 | 50 | 321 | 3.69e-78 | 241 |
| MS.gene06232.t1 | MTR_4g006650 | 87.413 | 143 | 14 | 1 | 34 | 176 | 157 | 295 | 1.84e-60 | 196 |
| MS.gene06232.t1 | MTR_2g026685 | 47.101 | 276 | 107 | 5 | 43 | 317 | 32 | 269 | 1.99e-50 | 168 |
| MS.gene06232.t1 | MTR_2g026685 | 47.101 | 276 | 107 | 5 | 43 | 317 | 33 | 270 | 2.05e-50 | 168 |
| MS.gene06232.t1 | MTR_2g026685 | 47.566 | 267 | 101 | 5 | 52 | 317 | 1 | 229 | 8.98e-48 | 160 |
| MS.gene06232.t1 | MTR_3g093020 | 35.484 | 310 | 163 | 7 | 15 | 316 | 3 | 283 | 5.45e-38 | 136 |
| MS.gene06232.t1 | MTR_3g435930 | 32.967 | 273 | 119 | 8 | 46 | 317 | 28 | 237 | 6.81e-32 | 119 |
| MS.gene06232.t1 | MTR_5g069180 | 37.654 | 162 | 88 | 3 | 47 | 206 | 56 | 206 | 7.53e-28 | 110 |
| MS.gene06232.t1 | MTR_4g057765 | 29.720 | 286 | 156 | 8 | 47 | 317 | 69 | 324 | 4.42e-26 | 105 |
| MS.gene06232.t1 | MTR_1g063210 | 31.897 | 348 | 170 | 9 | 20 | 317 | 3 | 333 | 1.70e-25 | 104 |
| MS.gene06232.t1 | MTR_2g095480 | 35.032 | 157 | 100 | 1 | 43 | 199 | 64 | 218 | 5.98e-25 | 103 |
| MS.gene06232.t1 | MTR_7g101930 | 26.765 | 340 | 176 | 7 | 46 | 317 | 15 | 349 | 9.53e-21 | 91.7 |
| MS.gene06232.t1 | MTR_0041s0140 | 31.156 | 199 | 106 | 5 | 46 | 220 | 15 | 206 | 1.10e-15 | 75.9 |
| MS.gene06232.t1 | MTR_8g018747 | 46.774 | 62 | 33 | 0 | 145 | 206 | 23 | 84 | 2.15e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06232.t1 | AT5G50740 | 46.739 | 276 | 122 | 4 | 46 | 317 | 29 | 283 | 5.43e-71 | 222 |
| MS.gene06232.t1 | AT5G50740 | 46.739 | 276 | 122 | 4 | 46 | 317 | 29 | 283 | 5.43e-71 | 222 |
| MS.gene06232.t1 | AT5G50740 | 46.739 | 276 | 122 | 4 | 46 | 317 | 36 | 290 | 9.21e-71 | 221 |
| MS.gene06232.t1 | AT5G63530 | 68.902 | 164 | 50 | 1 | 45 | 207 | 59 | 222 | 1.53e-61 | 199 |
| MS.gene06232.t1 | AT5G63530 | 68.902 | 164 | 50 | 1 | 45 | 207 | 74 | 237 | 1.94e-61 | 199 |
| MS.gene06232.t1 | AT5G50740 | 58.197 | 122 | 51 | 0 | 46 | 167 | 29 | 150 | 1.02e-42 | 145 |
| MS.gene06232.t1 | AT5G50740 | 58.197 | 122 | 51 | 0 | 46 | 167 | 36 | 157 | 2.05e-42 | 144 |
| MS.gene06232.t1 | AT3G02960 | 30.915 | 317 | 148 | 6 | 1 | 317 | 1 | 246 | 7.06e-42 | 145 |
| MS.gene06232.t1 | AT5G24580 | 31.650 | 297 | 141 | 6 | 46 | 316 | 57 | 317 | 2.06e-34 | 128 |
| MS.gene06232.t1 | AT5G24580 | 31.650 | 297 | 141 | 6 | 46 | 316 | 58 | 318 | 2.36e-34 | 128 |
| MS.gene06232.t1 | AT5G24580 | 31.650 | 297 | 141 | 6 | 46 | 316 | 58 | 318 | 2.36e-34 | 128 |
| MS.gene06232.t1 | AT5G24580 | 30.640 | 297 | 141 | 7 | 46 | 316 | 58 | 315 | 6.53e-31 | 119 |
| MS.gene06232.t1 | AT2G36950 | 31.657 | 338 | 162 | 11 | 46 | 317 | 52 | 386 | 2.12e-28 | 113 |
| MS.gene06232.t1 | AT5G03380 | 28.030 | 396 | 181 | 12 | 20 | 317 | 3 | 392 | 7.85e-26 | 106 |
| MS.gene06232.t1 | AT5G24580 | 30.451 | 266 | 123 | 6 | 77 | 316 | 2 | 231 | 1.14e-24 | 100 |
| MS.gene06232.t1 | AT5G03380 | 27.989 | 368 | 164 | 11 | 48 | 317 | 1 | 365 | 1.83e-24 | 102 |
| MS.gene06232.t1 | AT1G29000 | 33.750 | 160 | 103 | 2 | 49 | 206 | 20 | 178 | 1.51e-21 | 92.8 |
| MS.gene06232.t1 | AT1G29000 | 33.750 | 160 | 103 | 2 | 49 | 206 | 20 | 178 | 1.51e-21 | 92.8 |
| MS.gene06232.t1 | AT5G60800 | 29.310 | 174 | 110 | 3 | 42 | 204 | 24 | 195 | 1.51e-13 | 70.1 |
| MS.gene06232.t1 | AT5G60800 | 29.310 | 174 | 110 | 3 | 42 | 204 | 24 | 195 | 2.49e-13 | 69.7 |
Find 80 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAATGCATGTGAACTTTA+AGG | 0.123803 | 3.1:+78920737 | None:intergenic |
| TATGCAGGATATCCAATTTC+TGG | 0.228734 | 3.1:+78919679 | None:intergenic |
| AGCAGAGCCATTGAAGGTTT+TGG | 0.240236 | 3.1:-78921010 | MS.gene06232:CDS |
| TCTTCTTTCTTCTCCTCTTC+AGG | 0.262478 | 3.1:+78920889 | None:intergenic |
| TTGTATGCATACCCAGAAAT+TGG | 0.264045 | 3.1:-78919691 | MS.gene06232:CDS |
| CACATGACGCTGCATGCATT+TGG | 0.299690 | 3.1:+78919580 | None:intergenic |
| GAATATGTGTACAAGAGAAT+TGG | 0.337745 | 3.1:-78919934 | MS.gene06232:CDS |
| GGCGCCGGTGGCGGTGGTGG+AGG | 0.378419 | 3.1:+78919625 | None:intergenic |
| GAGTTCAGAAGAAGAGTCAT+AGG | 0.384792 | 3.1:-78920984 | MS.gene06232:CDS |
| TGTGGCGCCGGTGGCGGTGG+TGG | 0.385547 | 3.1:+78919622 | None:intergenic |
| ACATGACGCTGCATGCATTT+GGG | 0.387825 | 3.1:+78919581 | None:intergenic |
| ACATATTCAACCAGCATTGT+TGG | 0.400300 | 3.1:+78919949 | None:intergenic |
| AATATGTGTACAAGAGAATT+GGG | 0.410323 | 3.1:-78919933 | MS.gene06232:CDS |
| ATTTGTGGCGCCGGTGGCGG+TGG | 0.411514 | 3.1:+78919619 | None:intergenic |
| TTTCTCCTCTTCTTGTCGCT+TGG | 0.420884 | 3.1:+78919792 | None:intergenic |
| TTGACTCGCAGGAGTGGAAT+TGG | 0.430688 | 3.1:-78920022 | MS.gene06232:intron |
| ATCTCTGCCGGAGGCGGTGG+AGG | 0.439963 | 3.1:+78921162 | None:intergenic |
| GCGCCGGTGGCGGTGGTGGA+GGG | 0.441430 | 3.1:+78919626 | None:intergenic |
| TTTCCTCCTCAGGAGCAGTT+GGG | 0.442294 | 3.1:+78920938 | None:intergenic |
| TTCTCATCACTGAACATTTG+TGG | 0.463049 | 3.1:+78919604 | None:intergenic |
| AACAGATTGCAAATCTCATA+TGG | 0.468470 | 3.1:-78921052 | MS.gene06232:CDS |
| GAAAGAAGAAGGAGAGGGTG+AGG | 0.470465 | 3.1:-78919815 | MS.gene06232:CDS |
| GAAGGAAGAGAAAGTGGAGG+AGG | 0.477809 | 3.1:-78919893 | MS.gene06232:CDS |
| AACATTTGTGGCGCCGGTGG+CGG | 0.479452 | 3.1:+78919616 | None:intergenic |
| ATAATCTCTGCCGGAGGCGG+TGG | 0.484381 | 3.1:+78921159 | None:intergenic |
| TGAGCATGATAGTAAGCAGC+TGG | 0.486591 | 3.1:+78919655 | None:intergenic |
| AGCATAATCTCTGCCGGAGG+CGG | 0.487601 | 3.1:+78921156 | None:intergenic |
| TGATGTTCCTCCACCGCCTC+CGG | 0.487719 | 3.1:-78921169 | MS.gene06232:CDS |
| ACTCTCTCCAAAACCTTCAA+TGG | 0.491679 | 3.1:+78921003 | None:intergenic |
| AGAGAAAGCAGAGCCATTGA+AGG | 0.492377 | 3.1:-78921016 | MS.gene06232:CDS |
| AGAGGAGAAAGTTGAAGAAG+TGG | 0.492702 | 3.1:-78919845 | MS.gene06232:CDS |
| AGAAGAGACAAATGTGGAAG+AGG | 0.493464 | 3.1:-78919755 | MS.gene06232:CDS |
| TAGTAAGCAGCTGGGTATGC+AGG | 0.497299 | 3.1:+78919664 | None:intergenic |
| ATGCAGGATATCCAATTTCT+GGG | 0.498068 | 3.1:+78919680 | None:intergenic |
| TCTTTCAATACCTCTCCCAT+TGG | 0.498383 | 3.1:+78921407 | None:intergenic |
| GATCATGAAGGAAGAGAAAG+TGG | 0.506766 | 3.1:-78919899 | MS.gene06232:CDS |
| TGAGGCCAAGCGACAAGAAG+AGG | 0.518325 | 3.1:-78919797 | MS.gene06232:CDS |
| AACTCTGAGGTAAGTGTGAA+GGG | 0.521530 | 3.1:-78919982 | MS.gene06232:CDS |
| CTGAACATTTGTGGCGCCGG+TGG | 0.526503 | 3.1:+78919613 | None:intergenic |
| TCCTCAGGAGCAGTTGGGAT+CGG | 0.529318 | 3.1:+78920943 | None:intergenic |
| GTGGCTGAGAAGAAAGAAGA+AGG | 0.533064 | 3.1:-78919826 | MS.gene06232:CDS |
| ATACCCTCCACCACCGCCAC+CGG | 0.533504 | 3.1:-78919629 | MS.gene06232:CDS |
| TGAGAAGAAAGAAGAAGGAG+AGG | 0.544036 | 3.1:-78919821 | MS.gene06232:CDS |
| TCTCATATGGTGGTTGTGAA+AGG | 0.544258 | 3.1:-78921039 | MS.gene06232:CDS |
| TCCGATCCCAACTGCTCCTG+AGG | 0.547732 | 3.1:-78920944 | MS.gene06232:CDS |
| ACTTTCAGCATAATCTCTGC+CGG | 0.558570 | 3.1:+78921150 | None:intergenic |
| TCACTGAACATTTGTGGCGC+CGG | 0.561801 | 3.1:+78919610 | None:intergenic |
| TGGGTATGCATACAAATCCA+TGG | 0.565942 | 3.1:+78919699 | None:intergenic |
| AAAAGTTGCTGAGGAAGAGA+AGG | 0.566341 | 3.1:-78920917 | MS.gene06232:CDS |
| GAACTCTGAGGTAAGTGTGA+AGG | 0.574142 | 3.1:-78919983 | MS.gene06232:CDS |
| CATGCATTGTGAAGCTTGTG+CGG | 0.582190 | 3.1:-78920725 | MS.gene06232:CDS |
| ACTCGCAGGAGTGGAATTGG+TGG | 0.583118 | 3.1:-78920019 | MS.gene06232:intron |
| AGAGAAGGCTGCACCTGAAG+AGG | 0.583611 | 3.1:-78920902 | MS.gene06232:CDS |
| TATGCATACAAATCCATGGA+TGG | 0.594682 | 3.1:+78919703 | None:intergenic |
| TGCATTGTGAAAGCTGTGCT+CGG | 0.595120 | 3.1:-78921122 | MS.gene06232:CDS |
| ATACTACTATAATCCATCCA+TGG | 0.596587 | 3.1:-78919716 | MS.gene06232:CDS |
| GGAAGAAGAAACCAAGCCAG+AGG | 0.600837 | 3.1:-78921208 | MS.gene06232:CDS |
| TTAGGAAGAGAAGAAAACAG+AGG | 0.601871 | 3.1:-78921271 | MS.gene06232:intron |
| GAGAAGAAAGAAGAAGGAGA+GGG | 0.602889 | 3.1:-78919820 | MS.gene06232:CDS |
| GTTATCACATCTTCAACACC+TGG | 0.604591 | 3.1:+78921072 | None:intergenic |
| CTCTGAGGTAAGTGTGAAGG+GGG | 0.606360 | 3.1:-78919980 | MS.gene06232:CDS |
| GATCCCAACTGCTCCTGAGG+AGG | 0.607543 | 3.1:-78920941 | MS.gene06232:CDS |
| GTAACTAACACCAATGGGAG+AGG | 0.610489 | 3.1:-78921417 | None:intergenic |
| CATGAAGGAAGAGAAAGTGG+AGG | 0.610980 | 3.1:-78919896 | MS.gene06232:CDS |
| AGAGGAAAGTAAGACAGAGG+AGG | 0.613057 | 3.1:-78921253 | MS.gene06232:CDS |
| TCAGAAGAAGAGTCATAGGA+AGG | 0.616480 | 3.1:-78920980 | MS.gene06232:CDS |
| GGTGTATGATCCAACAATGC+TGG | 0.619988 | 3.1:-78919959 | MS.gene06232:CDS |
| TGAAGAGGAGAAGAAAGAAG+AGG | 0.625518 | 3.1:-78920887 | MS.gene06232:intron |
| AGGACAACAATCACAATCTG+AGG | 0.626532 | 3.1:+78920757 | None:intergenic |
| AACAGAGGAAAGTAAGACAG+AGG | 0.628055 | 3.1:-78921256 | MS.gene06232:CDS |
| GGAGGAGGAAGCCAAAGCCG+AGG | 0.633720 | 3.1:-78919878 | MS.gene06232:CDS |
| GAAGCATGCAGTGATCATGA+AGG | 0.653325 | 3.1:-78919911 | MS.gene06232:CDS |
| TACTGTAGAAGAGACAAATG+TGG | 0.655441 | 3.1:-78919761 | MS.gene06232:CDS |
| GCTGTGCTCGGAAAGTTCGT+CGG | 0.656979 | 3.1:-78921110 | MS.gene06232:CDS |
| GAGCATGATAGTAAGCAGCT+GGG | 0.661089 | 3.1:+78919656 | None:intergenic |
| ACTCTGAGGTAAGTGTGAAG+GGG | 0.663378 | 3.1:-78919981 | MS.gene06232:CDS |
| TTCAGCATAATCTCTGCCGG+AGG | 0.675417 | 3.1:+78921153 | None:intergenic |
| AGATTGCAAATCTCATATGG+TGG | 0.675547 | 3.1:-78921049 | MS.gene06232:CDS |
| AACTGATCTGAAGAACTCTG+AGG | 0.714880 | 3.1:-78919995 | MS.gene06232:CDS |
| GCATTGTGAAGCTTGTGCGG+AGG | 0.759739 | 3.1:-78920722 | MS.gene06232:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTAATTTCATTTATCTA+TGG | - | chr3.1:78919654-78919673 | MS.gene06232:CDS | 10.0% |
| !!! | TTTTTTTTTTTTACTATAGT+AGG | - | chr3.1:78920544-78920563 | MS.gene06232:intron | 10.0% |
| !! | ATAAAAGAGAAGTTAAATAT+TGG | + | chr3.1:78920324-78920343 | None:intergenic | 15.0% |
| !!! | ATTGTATAATCTTATTTAGT+AGG | - | chr3.1:78920878-78920897 | MS.gene06232:intron | 15.0% |
| !! | AATTATGTGATTTAATTGAC+CGG | - | chr3.1:78920673-78920692 | MS.gene06232:intron | 20.0% |
| !! | ACAAATTCAATTGGTTAATT+TGG | - | chr3.1:78920410-78920429 | MS.gene06232:intron | 20.0% |
| !! | ACTTAACTAACAAATTCAAT+TGG | - | chr3.1:78920401-78920420 | MS.gene06232:intron | 20.0% |
| !! | ATGGTTAAATCAATTTAATC+CGG | + | chr3.1:78920463-78920482 | None:intergenic | 20.0% |
| !! | ATTATTATTGAAATAAGCAG+TGG | - | chr3.1:78920916-78920935 | MS.gene06232:CDS | 20.0% |
| !!! | AACTAATGTTTTAACAAACT+CGG | + | chr3.1:78920815-78920834 | None:intergenic | 20.0% |
| !!! | ATTGACTTACAAAGAAAAAA+CGG | + | chr3.1:78920497-78920516 | None:intergenic | 20.0% |
| !!! | CTTTTATTTACAAAATCAGA+TGG | - | chr3.1:78920337-78920356 | MS.gene06232:intron | 20.0% |
| ! | AAACGGATACTAAAAATGAA+TGG | - | chr3.1:78920292-78920311 | MS.gene06232:intron | 25.0% |
| ! | AAGAGAAGTTAAATATTGGA+CGG | + | chr3.1:78920320-78920339 | None:intergenic | 25.0% |
| ! | AATATGTGTACAAGAGAATT+GGG | - | chr3.1:78921050-78921069 | MS.gene06232:CDS | 25.0% |
| ! | AATTTGATTCAGCATTCAAT+TGG | + | chr3.1:78920853-78920872 | None:intergenic | 25.0% |
| ! | GACTTAGTATAGTAAAAAAC+CGG | + | chr3.1:78920732-78920751 | None:intergenic | 25.0% |
| !! | GGATTAAATTGATTTAACCA+TGG | - | chr3.1:78920462-78920481 | MS.gene06232:intron | 25.0% |
| !! | TAAATTGATTTAACCATGGT+TGG | - | chr3.1:78920466-78920485 | MS.gene06232:intron | 25.0% |
| AACAGATTGCAAATCTCATA+TGG | - | chr3.1:78919931-78919950 | MS.gene06232:CDS | 30.0% | |
| ACCAATGTAATTATTACGCA+CGG | - | chr3.1:78920602-78920621 | MS.gene06232:intron | 30.0% | |
| ATACTACTATAATCCATCCA+TGG | - | chr3.1:78921267-78921286 | MS.gene06232:CDS | 30.0% | |
| GAATATGTGTACAAGAGAAT+TGG | - | chr3.1:78921049-78921068 | MS.gene06232:CDS | 30.0% | |
| GCATAATGATTTAATTGGTC+CGG | + | chr3.1:78920695-78920714 | None:intergenic | 30.0% | |
| TTTGTAAGTCAATTATAGCG+TGG | - | chr3.1:78920504-78920523 | MS.gene06232:intron | 30.0% | |
| ! | AGAAAAAAAGCATAACTCCA+CGG | + | chr3.1:78920197-78920216 | None:intergenic | 30.0% |
| ! | TTGGTTTCTTCTTCCTTTTT+CGG | + | chr3.1:78919770-78919789 | None:intergenic | 30.0% |
| AAAAACAGAGGAACCGAAAA+AGG | - | chr3.1:78919754-78919773 | MS.gene06232:CDS | 35.0% | |
| ACATATTCAACCAGCATTGT+TGG | + | chr3.1:78921037-78921056 | None:intergenic | 35.0% | |
| ACCAACTAAATCATTGTGTG+CGG | - | chr3.1:78920779-78920798 | MS.gene06232:intron | 35.0% | |
| AGATTGCAAATCTCATATGG+TGG | - | chr3.1:78919934-78919953 | MS.gene06232:CDS | 35.0% | |
| ATGCAGGATATCCAATTTCT+GGG | + | chr3.1:78921306-78921325 | None:intergenic | 35.0% | |
| CACAATGCATGTGAACTTTA+AGG | + | chr3.1:78920249-78920268 | None:intergenic | 35.0% | |
| TACTGTAGAAGAGACAAATG+TGG | - | chr3.1:78921222-78921241 | MS.gene06232:CDS | 35.0% | |
| TATGCAGGATATCCAATTTC+TGG | + | chr3.1:78921307-78921326 | None:intergenic | 35.0% | |
| TATGCATACAAATCCATGGA+TGG | + | chr3.1:78921283-78921302 | None:intergenic | 35.0% | |
| TCCGTGCGTAATAATTACAT+TGG | + | chr3.1:78920606-78920625 | None:intergenic | 35.0% | |
| TGCGCGCATAATGATTTAAT+TGG | + | chr3.1:78920700-78920719 | None:intergenic | 35.0% | |
| TTAGGAAGAGAAGAAAACAG+AGG | - | chr3.1:78919712-78919731 | MS.gene06232:CDS | 35.0% | |
| TTCTCATCACTGAACATTTG+TGG | + | chr3.1:78921382-78921401 | None:intergenic | 35.0% | |
| TTGTATGCATACCCAGAAAT+TGG | - | chr3.1:78921292-78921311 | MS.gene06232:intron | 35.0% | |
| AAAAGTTGCTGAGGAAGAGA+AGG | - | chr3.1:78920066-78920085 | MS.gene06232:intron | 40.0% | |
| AACAGAGGAAAGTAAGACAG+AGG | - | chr3.1:78919727-78919746 | MS.gene06232:CDS | 40.0% | |
| AACTGATCTGAAGAACTCTG+AGG | - | chr3.1:78920988-78921007 | MS.gene06232:CDS | 40.0% | |
| ACTCTCTCCAAAACCTTCAA+TGG | + | chr3.1:78919983-78920002 | None:intergenic | 40.0% | |
| ACTTTCAGCATAATCTCTGC+CGG | + | chr3.1:78919836-78919855 | None:intergenic | 40.0% | |
| AGAAGAGACAAATGTGGAAG+AGG | - | chr3.1:78921228-78921247 | MS.gene06232:CDS | 40.0% | |
| AGAGGAGAAAGTTGAAGAAG+TGG | - | chr3.1:78921138-78921157 | MS.gene06232:CDS | 40.0% | |
| AGGACAACAATCACAATCTG+AGG | + | chr3.1:78920229-78920248 | None:intergenic | 40.0% | |
| ATGCTATCGTTTGACTGAAC+CGG | - | chr3.1:78920441-78920460 | MS.gene06232:intron | 40.0% | |
| GAGAAGAAAGAAGAAGGAGA+GGG | - | chr3.1:78921163-78921182 | MS.gene06232:CDS | 40.0% | |
| GAGTTCAGAAGAAGAGTCAT+AGG | - | chr3.1:78919999-78920018 | MS.gene06232:CDS | 40.0% | |
| GATCATGAAGGAAGAGAAAG+TGG | - | chr3.1:78921084-78921103 | MS.gene06232:CDS | 40.0% | |
| GATTTGATCCTTTGAATCCG+TGG | - | chr3.1:78920177-78920196 | MS.gene06232:intron | 40.0% | |
| GTTATCACATCTTCAACACC+TGG | + | chr3.1:78919914-78919933 | None:intergenic | 40.0% | |
| TAAGCAGTGGAATAATGAGC+TGG | - | chr3.1:78920929-78920948 | MS.gene06232:CDS | 40.0% | |
| TCAGAAGAAGAGTCATAGGA+AGG | - | chr3.1:78920003-78920022 | MS.gene06232:CDS | 40.0% | |
| TCCGCACACAATGATTTAGT+TGG | + | chr3.1:78920783-78920802 | None:intergenic | 40.0% | |
| TCTCATATGGTGGTTGTGAA+AGG | - | chr3.1:78919944-78919963 | MS.gene06232:CDS | 40.0% | |
| TCTTCTTTCTTCTCCTCTTC+AGG | + | chr3.1:78920097-78920116 | None:intergenic | 40.0% | |
| TGAAGAGGAGAAGAAAGAAG+AGG | - | chr3.1:78920096-78920115 | MS.gene06232:intron | 40.0% | |
| TGAGAAGAAAGAAGAAGGAG+AGG | - | chr3.1:78921162-78921181 | MS.gene06232:CDS | 40.0% | |
| TGGGTATGCATACAAATCCA+TGG | + | chr3.1:78921287-78921306 | None:intergenic | 40.0% | |
| !! | AACTCTGAGGTAAGTGTGAA+GGG | - | chr3.1:78921001-78921020 | MS.gene06232:CDS | 40.0% |
| !! | ATCTTTTGTTTCCTCTGGCT+TGG | + | chr3.1:78919789-78919808 | None:intergenic | 40.0% |
| !! | GCTTCATCTTTTGTTTCCTC+TGG | + | chr3.1:78919794-78919813 | None:intergenic | 40.0% |
| !!! | CTCCTCTTTTTTCTCTTCCT+CGG | + | chr3.1:78921125-78921144 | None:intergenic | 40.0% |
| !!! | TTTTTTCTCTTCCTCGGCTT+TGG | + | chr3.1:78921119-78921138 | None:intergenic | 40.0% |
| AAAAACGGCTGAACCAACCA+TGG | + | chr3.1:78920482-78920501 | None:intergenic | 45.0% | |
| ACATGACGCTGCATGCATTT+GGG | + | chr3.1:78921405-78921424 | None:intergenic | 45.0% | |
| AGAGAAAGCAGAGCCATTGA+AGG | - | chr3.1:78919967-78919986 | MS.gene06232:CDS | 45.0% | |
| AGAGGAAAGTAAGACAGAGG+AGG | - | chr3.1:78919730-78919749 | MS.gene06232:CDS | 45.0% | |
| AGCCGAGGAAGAGAAAAAAG+AGG | - | chr3.1:78921120-78921139 | MS.gene06232:CDS | 45.0% | |
| CATGAAGGAAGAGAAAGTGG+AGG | - | chr3.1:78921087-78921106 | MS.gene06232:CDS | 45.0% | |
| CATGCATTGTGAAGCTTGTG+CGG | - | chr3.1:78920258-78920277 | MS.gene06232:intron | 45.0% | |
| GAAGCATGCAGTGATCATGA+AGG | - | chr3.1:78921072-78921091 | MS.gene06232:CDS | 45.0% | |
| GACAGAGGAGGAAAAAACAG+AGG | - | chr3.1:78919742-78919761 | MS.gene06232:CDS | 45.0% | |
| GAGCATGATAGTAAGCAGCT+GGG | + | chr3.1:78921330-78921349 | None:intergenic | 45.0% | |
| GCATAACTCCACGGATTCAA+AGG | + | chr3.1:78920188-78920207 | None:intergenic | 45.0% | |
| GGTGTATGATCCAACAATGC+TGG | - | chr3.1:78921024-78921043 | MS.gene06232:CDS | 45.0% | |
| GTGCGGAGGAGATCAAAAAA+CGG | - | chr3.1:78920275-78920294 | MS.gene06232:intron | 45.0% | |
| GTGGCTGAGAAGAAAGAAGA+AGG | - | chr3.1:78921157-78921176 | MS.gene06232:CDS | 45.0% | |
| TATGCGCGCAATATCATGTC+CGG | - | chr3.1:78920710-78920729 | MS.gene06232:CDS | 45.0% | |
| TGAGCATGATAGTAAGCAGC+TGG | + | chr3.1:78921331-78921350 | None:intergenic | 45.0% | |
| TGAGGAGGAAAAAGTTGCTG+AGG | - | chr3.1:78920057-78920076 | MS.gene06232:intron | 45.0% | |
| TGCATTGTGAAAGCTGTGCT+CGG | - | chr3.1:78919861-78919880 | MS.gene06232:CDS | 45.0% | |
| TTTCTCCTCTTCTTGTCGCT+TGG | + | chr3.1:78921194-78921213 | None:intergenic | 45.0% | |
| ! | AGCAGAGCCATTGAAGGTTT+TGG | - | chr3.1:78919973-78919992 | MS.gene06232:CDS | 45.0% |
| ! | CGGTCGTTGAAAGATTTTCC+AGG | - | chr3.1:78919893-78919912 | MS.gene06232:CDS | 45.0% |
| !! | ACTCTGAGGTAAGTGTGAAG+GGG | - | chr3.1:78921002-78921021 | MS.gene06232:CDS | 45.0% |
| !! | ATGTAATTGACTCGCAGGAG+TGG | - | chr3.1:78920955-78920974 | MS.gene06232:CDS | 45.0% |
| !! | GAACTCTGAGGTAAGTGTGA+AGG | - | chr3.1:78921000-78921019 | MS.gene06232:CDS | 45.0% |
| !! | GGTTGATGTAATTGACTCGC+AGG | - | chr3.1:78920950-78920969 | MS.gene06232:CDS | 45.0% |
| !! | TCAGCAACTTTTTCCTCCTC+AGG | + | chr3.1:78920058-78920077 | None:intergenic | 45.0% |
| !!! | TTTTTATTTTTTTTTTGTTT+AGG | - | chr3.1:78919694-78919713 | MS.gene06232:CDS | 5.0% |
| CACATGACGCTGCATGCATT+TGG | + | chr3.1:78921406-78921425 | None:intergenic | 50.0% | |
| GAAAGAAGAAGGAGAGGGTG+AGG | - | chr3.1:78921168-78921187 | MS.gene06232:CDS | 50.0% | |
| GAAGGAAGAGAAAGTGGAGG+AGG | - | chr3.1:78921090-78921109 | MS.gene06232:CDS | 50.0% | |
| GGAAGAAGAAACCAAGCCAG+AGG | - | chr3.1:78919775-78919794 | MS.gene06232:CDS | 50.0% | |
| TAGTAAGCAGCTGGGTATGC+AGG | + | chr3.1:78921322-78921341 | None:intergenic | 50.0% | |
| TCACTGAACATTTGTGGCGC+CGG | + | chr3.1:78921376-78921395 | None:intergenic | 50.0% | |
| TTCAGCATAATCTCTGCCGG+AGG | + | chr3.1:78919833-78919852 | None:intergenic | 50.0% | |
| TTTCCTCCTCAGGAGCAGTT+GGG | + | chr3.1:78920048-78920067 | None:intergenic | 50.0% | |
| ! | TTGACTCGCAGGAGTGGAAT+TGG | - | chr3.1:78920961-78920980 | MS.gene06232:CDS | 50.0% |
| ! | TTTTCCTCCTCAGGAGCAGT+TGG | + | chr3.1:78920049-78920068 | None:intergenic | 50.0% |
| !! | CTCTGAGGTAAGTGTGAAGG+GGG | - | chr3.1:78921003-78921022 | MS.gene06232:CDS | 50.0% |
| ACTCGCAGGAGTGGAATTGG+TGG | - | chr3.1:78920964-78920983 | MS.gene06232:CDS | 55.0% | |
| AGAGAAGGCTGCACCTGAAG+AGG | - | chr3.1:78920081-78920100 | MS.gene06232:intron | 55.0% | |
| AGCATAATCTCTGCCGGAGG+CGG | + | chr3.1:78919830-78919849 | None:intergenic | 55.0% | |
| GCATTGTGAAGCTTGTGCGG+AGG | - | chr3.1:78920261-78920280 | MS.gene06232:intron | 55.0% | |
| GCTGTGCTCGGAAAGTTCGT+CGG | - | chr3.1:78919873-78919892 | MS.gene06232:CDS | 55.0% | |
| TCCTCAGGAGCAGTTGGGAT+CGG | + | chr3.1:78920043-78920062 | None:intergenic | 55.0% | |
| TGAGGCCAAGCGACAAGAAG+AGG | - | chr3.1:78921186-78921205 | MS.gene06232:CDS | 55.0% | |
| ATAATCTCTGCCGGAGGCGG+TGG | + | chr3.1:78919827-78919846 | None:intergenic | 60.0% | |
| GATCCCAACTGCTCCTGAGG+AGG | - | chr3.1:78920042-78920061 | MS.gene06232:intron | 60.0% | |
| TCCGATCCCAACTGCTCCTG+AGG | - | chr3.1:78920039-78920058 | MS.gene06232:intron | 60.0% | |
| TGATGTTCCTCCACCGCCTC+CGG | - | chr3.1:78919814-78919833 | MS.gene06232:CDS | 60.0% | |
| ! | CTGAACATTTGTGGCGCCGG+TGG | + | chr3.1:78921373-78921392 | None:intergenic | 60.0% |
| !! | AACATTTGTGGCGCCGGTGG+CGG | + | chr3.1:78921370-78921389 | None:intergenic | 60.0% |
| ATACCCTCCACCACCGCCAC+CGG | - | chr3.1:78921354-78921373 | MS.gene06232:intron | 65.0% | |
| GGAGGAGGAAGCCAAAGCCG+AGG | - | chr3.1:78921105-78921124 | MS.gene06232:CDS | 65.0% | |
| ATCTCTGCCGGAGGCGGTGG+AGG | + | chr3.1:78919824-78919843 | None:intergenic | 70.0% | |
| !! | ATTTGTGGCGCCGGTGGCGG+TGG | + | chr3.1:78921367-78921386 | None:intergenic | 70.0% |
| !!! | GCGCCGGTGGCGGTGGTGGA+GGG | + | chr3.1:78921360-78921379 | None:intergenic | 80.0% |
| !!! | TGTGGCGCCGGTGGCGGTGG+TGG | + | chr3.1:78921364-78921383 | None:intergenic | 80.0% |
| !!! | GGCGCCGGTGGCGGTGGTGG+AGG | + | chr3.1:78921361-78921380 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 78919579 | 78921426 | 78919579 | ID=MS.gene06232 |
| chr3.1 | mRNA | 78919579 | 78921426 | 78919579 | ID=MS.gene06232.t1;Parent=MS.gene06232 |
| chr3.1 | exon | 78921418 | 78921426 | 78921418 | ID=MS.gene06232.t1.exon1;Parent=MS.gene06232.t1 |
| chr3.1 | CDS | 78921418 | 78921426 | 78921418 | ID=cds.MS.gene06232.t1;Parent=MS.gene06232.t1 |
| chr3.1 | exon | 78920888 | 78921289 | 78920888 | ID=MS.gene06232.t1.exon2;Parent=MS.gene06232.t1 |
| chr3.1 | CDS | 78920888 | 78921289 | 78920888 | ID=cds.MS.gene06232.t1;Parent=MS.gene06232.t1 |
| chr3.1 | exon | 78920692 | 78920779 | 78920692 | ID=MS.gene06232.t1.exon3;Parent=MS.gene06232.t1 |
| chr3.1 | CDS | 78920692 | 78920779 | 78920692 | ID=cds.MS.gene06232.t1;Parent=MS.gene06232.t1 |
| chr3.1 | exon | 78919579 | 78920033 | 78919579 | ID=MS.gene06232.t1.exon4;Parent=MS.gene06232.t1 |
| chr3.1 | CDS | 78919579 | 78920033 | 78919579 | ID=cds.MS.gene06232.t1;Parent=MS.gene06232.t1 |
| Gene Sequence |
| Protein sequence |
