Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055508.t1 | XP_003602791.2 | 87.4 | 277 | 30 | 2 | 41 | 317 | 31 | 302 | 1.60E-69 | 273.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055508.t1 | Q9C5D3 | 77.2 | 162 | 36 | 1 | 47 | 207 | 76 | 237 | 6.3e-46 | 186.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055508.t1 | G7J3E1 | 87.4 | 277 | 30 | 2 | 41 | 317 | 31 | 302 | 1.2e-69 | 273.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055508 | MS.gene057392 | 0.811541 | 6.65E-51 | -1.69E-46 |
| MS.gene055508 | MS.gene06232 | 0.989739 | 1.96E-179 | -1.69E-46 |
| MS.gene055508 | MS.gene93875 | 0.822977 | 1.77E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055508.t1 | MTR_3g099040 | 91.901 | 284 | 18 | 2 | 34 | 317 | 24 | 302 | 3.71e-115 | 335 |
| MS.gene055508.t1 | MTR_3g099030 | 65.614 | 285 | 57 | 3 | 33 | 317 | 23 | 266 | 2.16e-96 | 286 |
| MS.gene055508.t1 | MTR_8g096700 | 53.177 | 299 | 89 | 8 | 43 | 317 | 50 | 321 | 3.69e-78 | 241 |
| MS.gene055508.t1 | MTR_4g006650 | 87.413 | 143 | 14 | 1 | 34 | 176 | 157 | 295 | 1.84e-60 | 196 |
| MS.gene055508.t1 | MTR_2g026685 | 47.101 | 276 | 107 | 5 | 43 | 317 | 32 | 269 | 1.99e-50 | 168 |
| MS.gene055508.t1 | MTR_2g026685 | 47.101 | 276 | 107 | 5 | 43 | 317 | 33 | 270 | 2.05e-50 | 168 |
| MS.gene055508.t1 | MTR_2g026685 | 47.566 | 267 | 101 | 5 | 52 | 317 | 1 | 229 | 8.98e-48 | 160 |
| MS.gene055508.t1 | MTR_3g093020 | 35.484 | 310 | 163 | 7 | 15 | 316 | 3 | 283 | 5.45e-38 | 136 |
| MS.gene055508.t1 | MTR_3g435930 | 32.967 | 273 | 119 | 8 | 46 | 317 | 28 | 237 | 6.81e-32 | 119 |
| MS.gene055508.t1 | MTR_5g069180 | 37.654 | 162 | 88 | 3 | 47 | 206 | 56 | 206 | 7.53e-28 | 110 |
| MS.gene055508.t1 | MTR_4g057765 | 29.720 | 286 | 156 | 8 | 47 | 317 | 69 | 324 | 4.42e-26 | 105 |
| MS.gene055508.t1 | MTR_1g063210 | 31.897 | 348 | 170 | 9 | 20 | 317 | 3 | 333 | 1.70e-25 | 104 |
| MS.gene055508.t1 | MTR_2g095480 | 35.032 | 157 | 100 | 1 | 43 | 199 | 64 | 218 | 5.98e-25 | 103 |
| MS.gene055508.t1 | MTR_7g101930 | 26.765 | 340 | 176 | 7 | 46 | 317 | 15 | 349 | 9.53e-21 | 91.7 |
| MS.gene055508.t1 | MTR_0041s0140 | 31.156 | 199 | 106 | 5 | 46 | 220 | 15 | 206 | 1.10e-15 | 75.9 |
| MS.gene055508.t1 | MTR_8g018747 | 46.774 | 62 | 33 | 0 | 145 | 206 | 23 | 84 | 2.15e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055508.t1 | AT5G50740 | 46.739 | 276 | 122 | 4 | 46 | 317 | 29 | 283 | 5.43e-71 | 222 |
| MS.gene055508.t1 | AT5G50740 | 46.739 | 276 | 122 | 4 | 46 | 317 | 29 | 283 | 5.43e-71 | 222 |
| MS.gene055508.t1 | AT5G50740 | 46.739 | 276 | 122 | 4 | 46 | 317 | 36 | 290 | 9.21e-71 | 221 |
| MS.gene055508.t1 | AT5G63530 | 68.902 | 164 | 50 | 1 | 45 | 207 | 59 | 222 | 1.53e-61 | 199 |
| MS.gene055508.t1 | AT5G63530 | 68.902 | 164 | 50 | 1 | 45 | 207 | 74 | 237 | 1.94e-61 | 199 |
| MS.gene055508.t1 | AT5G50740 | 58.197 | 122 | 51 | 0 | 46 | 167 | 29 | 150 | 1.02e-42 | 145 |
| MS.gene055508.t1 | AT5G50740 | 58.197 | 122 | 51 | 0 | 46 | 167 | 36 | 157 | 2.05e-42 | 144 |
| MS.gene055508.t1 | AT3G02960 | 30.915 | 317 | 148 | 6 | 1 | 317 | 1 | 246 | 7.06e-42 | 145 |
| MS.gene055508.t1 | AT5G24580 | 31.650 | 297 | 141 | 6 | 46 | 316 | 57 | 317 | 2.06e-34 | 128 |
| MS.gene055508.t1 | AT5G24580 | 31.650 | 297 | 141 | 6 | 46 | 316 | 58 | 318 | 2.36e-34 | 128 |
| MS.gene055508.t1 | AT5G24580 | 31.650 | 297 | 141 | 6 | 46 | 316 | 58 | 318 | 2.36e-34 | 128 |
| MS.gene055508.t1 | AT5G24580 | 30.640 | 297 | 141 | 7 | 46 | 316 | 58 | 315 | 6.53e-31 | 119 |
| MS.gene055508.t1 | AT2G36950 | 31.657 | 338 | 162 | 11 | 46 | 317 | 52 | 386 | 2.12e-28 | 113 |
| MS.gene055508.t1 | AT5G03380 | 28.030 | 396 | 181 | 12 | 20 | 317 | 3 | 392 | 7.85e-26 | 106 |
| MS.gene055508.t1 | AT5G24580 | 30.451 | 266 | 123 | 6 | 77 | 316 | 2 | 231 | 1.14e-24 | 100 |
| MS.gene055508.t1 | AT5G03380 | 27.989 | 368 | 164 | 11 | 48 | 317 | 1 | 365 | 1.83e-24 | 102 |
| MS.gene055508.t1 | AT1G29000 | 33.750 | 160 | 103 | 2 | 49 | 206 | 20 | 178 | 1.51e-21 | 92.8 |
| MS.gene055508.t1 | AT1G29000 | 33.750 | 160 | 103 | 2 | 49 | 206 | 20 | 178 | 1.51e-21 | 92.8 |
| MS.gene055508.t1 | AT5G60800 | 29.310 | 174 | 110 | 3 | 42 | 204 | 24 | 195 | 1.51e-13 | 70.1 |
| MS.gene055508.t1 | AT5G60800 | 29.310 | 174 | 110 | 3 | 42 | 204 | 24 | 195 | 2.49e-13 | 69.7 |
Find 80 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAATGCATGTGAACTTTA+AGG | 0.123803 | 3.2:+82429543 | None:intergenic |
| TATGCAGGATATCCAATTTC+TGG | 0.228734 | 3.2:+82428486 | None:intergenic |
| AGCAGAGCCATTGAAGGTTT+TGG | 0.240236 | 3.2:-82429816 | MS.gene055508:CDS |
| TCTTCTTTCTTCTCCTCTTC+AGG | 0.262478 | 3.2:+82429695 | None:intergenic |
| TTGTATGCATACCCAGAAAT+TGG | 0.264045 | 3.2:-82428498 | MS.gene055508:CDS |
| CACATGACGCTGCATGCATT+TGG | 0.299690 | 3.2:+82428387 | None:intergenic |
| GAATATGTGTACAAGAGAAT+TGG | 0.337745 | 3.2:-82428741 | MS.gene055508:CDS |
| GGCGCCGGTGGCGGTGGTGG+AGG | 0.378419 | 3.2:+82428432 | None:intergenic |
| GAGTTCAGAAGAAGAGTCAT+AGG | 0.384792 | 3.2:-82429790 | MS.gene055508:CDS |
| TGTGGCGCCGGTGGCGGTGG+TGG | 0.385547 | 3.2:+82428429 | None:intergenic |
| ACATGACGCTGCATGCATTT+GGG | 0.387825 | 3.2:+82428388 | None:intergenic |
| ACATATTCAACCAGCATTGT+TGG | 0.400300 | 3.2:+82428756 | None:intergenic |
| AATATGTGTACAAGAGAATT+GGG | 0.410323 | 3.2:-82428740 | MS.gene055508:CDS |
| ATTTGTGGCGCCGGTGGCGG+TGG | 0.411514 | 3.2:+82428426 | None:intergenic |
| TTTCTCCTCTTCTTGTCGCT+TGG | 0.420884 | 3.2:+82428599 | None:intergenic |
| TTGACTCGCAGGAGTGGAAT+TGG | 0.430688 | 3.2:-82428829 | MS.gene055508:intron |
| ATCTCTGCCGGAGGCGGTGG+AGG | 0.439963 | 3.2:+82429968 | None:intergenic |
| GCGCCGGTGGCGGTGGTGGA+GGG | 0.441430 | 3.2:+82428433 | None:intergenic |
| TTTCCTCCTCAGGAGCAGTT+GGG | 0.442294 | 3.2:+82429744 | None:intergenic |
| TTCTCATCACTGAACATTTG+TGG | 0.463049 | 3.2:+82428411 | None:intergenic |
| AACAGATTGCAAATCTCATA+TGG | 0.468470 | 3.2:-82429858 | MS.gene055508:CDS |
| GAAAGAAGAAGGAGAGGGTG+AGG | 0.470465 | 3.2:-82428622 | MS.gene055508:CDS |
| GAAGGAAGAGAAAGTGGAGG+AGG | 0.477809 | 3.2:-82428700 | MS.gene055508:CDS |
| AACATTTGTGGCGCCGGTGG+CGG | 0.479452 | 3.2:+82428423 | None:intergenic |
| ATAATCTCTGCCGGAGGCGG+TGG | 0.484381 | 3.2:+82429965 | None:intergenic |
| TGAGCATGATAGTAAGCAGC+TGG | 0.486591 | 3.2:+82428462 | None:intergenic |
| AGCATAATCTCTGCCGGAGG+CGG | 0.487601 | 3.2:+82429962 | None:intergenic |
| TGATGTTCCTCCACCGCCTC+CGG | 0.487719 | 3.2:-82429975 | MS.gene055508:CDS |
| ACTCTCTCCAAAACCTTCAA+TGG | 0.491679 | 3.2:+82429809 | None:intergenic |
| AGAGAAAGCAGAGCCATTGA+AGG | 0.492377 | 3.2:-82429822 | MS.gene055508:CDS |
| AGAGGAGAAAGTTGAAGAAG+TGG | 0.492702 | 3.2:-82428652 | MS.gene055508:CDS |
| AGAAGAGACAAATGTGGAAG+AGG | 0.493464 | 3.2:-82428562 | MS.gene055508:CDS |
| TAGTAAGCAGCTGGGTATGC+AGG | 0.497299 | 3.2:+82428471 | None:intergenic |
| ATGCAGGATATCCAATTTCT+GGG | 0.498068 | 3.2:+82428487 | None:intergenic |
| TCTTTCAATACCTCTCCCAT+TGG | 0.498383 | 3.2:+82430213 | None:intergenic |
| GATCATGAAGGAAGAGAAAG+TGG | 0.506766 | 3.2:-82428706 | MS.gene055508:CDS |
| TGAGGCCAAGCGACAAGAAG+AGG | 0.518325 | 3.2:-82428604 | MS.gene055508:CDS |
| AACTCTGAGGTAAGTGTGAA+GGG | 0.521530 | 3.2:-82428789 | MS.gene055508:CDS |
| CTGAACATTTGTGGCGCCGG+TGG | 0.526503 | 3.2:+82428420 | None:intergenic |
| TCCTCAGGAGCAGTTGGGAT+CGG | 0.529318 | 3.2:+82429749 | None:intergenic |
| GTGGCTGAGAAGAAAGAAGA+AGG | 0.533064 | 3.2:-82428633 | MS.gene055508:CDS |
| ATACCCTCCACCACCGCCAC+CGG | 0.533504 | 3.2:-82428436 | MS.gene055508:CDS |
| TGAGAAGAAAGAAGAAGGAG+AGG | 0.544036 | 3.2:-82428628 | MS.gene055508:CDS |
| TCTCATATGGTGGTTGTGAA+AGG | 0.544258 | 3.2:-82429845 | MS.gene055508:CDS |
| TCCGATCCCAACTGCTCCTG+AGG | 0.547732 | 3.2:-82429750 | MS.gene055508:CDS |
| ACTTTCAGCATAATCTCTGC+CGG | 0.558570 | 3.2:+82429956 | None:intergenic |
| TCACTGAACATTTGTGGCGC+CGG | 0.561801 | 3.2:+82428417 | None:intergenic |
| TGGGTATGCATACAAATCCA+TGG | 0.565942 | 3.2:+82428506 | None:intergenic |
| AAAAGTTGCTGAGGAAGAGA+AGG | 0.566341 | 3.2:-82429723 | MS.gene055508:CDS |
| GAACTCTGAGGTAAGTGTGA+AGG | 0.574142 | 3.2:-82428790 | MS.gene055508:CDS |
| CATGCATTGTGAAGCTTGTG+CGG | 0.582190 | 3.2:-82429531 | MS.gene055508:CDS |
| ACTCGCAGGAGTGGAATTGG+TGG | 0.583118 | 3.2:-82428826 | MS.gene055508:intron |
| AGAGAAGGCTGCACCTGAAG+AGG | 0.583611 | 3.2:-82429708 | MS.gene055508:CDS |
| TATGCATACAAATCCATGGA+TGG | 0.594682 | 3.2:+82428510 | None:intergenic |
| TGCATTGTGAAAGCTGTGCT+CGG | 0.595120 | 3.2:-82429928 | MS.gene055508:CDS |
| ATACTACTATAATCCATCCA+TGG | 0.596587 | 3.2:-82428523 | MS.gene055508:CDS |
| GGAAGAAGAAACCAAGCCAG+AGG | 0.600837 | 3.2:-82430014 | MS.gene055508:CDS |
| TTAGGAAGAGAAGAAAACAG+AGG | 0.601871 | 3.2:-82430077 | MS.gene055508:intron |
| GAGAAGAAAGAAGAAGGAGA+GGG | 0.602889 | 3.2:-82428627 | MS.gene055508:CDS |
| GTTATCACATCTTCAACACC+TGG | 0.604591 | 3.2:+82429878 | None:intergenic |
| CTCTGAGGTAAGTGTGAAGG+GGG | 0.606360 | 3.2:-82428787 | MS.gene055508:CDS |
| GATCCCAACTGCTCCTGAGG+AGG | 0.607543 | 3.2:-82429747 | MS.gene055508:CDS |
| GTAACTAACACCAATGGGAG+AGG | 0.610489 | 3.2:-82430223 | None:intergenic |
| CATGAAGGAAGAGAAAGTGG+AGG | 0.610980 | 3.2:-82428703 | MS.gene055508:CDS |
| AGAGGAAAGTAAGACAGAGG+AGG | 0.613057 | 3.2:-82430059 | MS.gene055508:CDS |
| TCAGAAGAAGAGTCATAGGA+AGG | 0.616480 | 3.2:-82429786 | MS.gene055508:CDS |
| GGTGTATGATCCAACAATGC+TGG | 0.619988 | 3.2:-82428766 | MS.gene055508:CDS |
| TGAAGAGGAGAAGAAAGAAG+AGG | 0.625518 | 3.2:-82429693 | MS.gene055508:intron |
| AGGACAACAATCACAATCTG+AGG | 0.626532 | 3.2:+82429563 | None:intergenic |
| AACAGAGGAAAGTAAGACAG+AGG | 0.628055 | 3.2:-82430062 | MS.gene055508:CDS |
| GGAGGAGGAAGCCAAAGCCG+AGG | 0.633720 | 3.2:-82428685 | MS.gene055508:CDS |
| GAAGCATGCAGTGATCATGA+AGG | 0.653325 | 3.2:-82428718 | MS.gene055508:CDS |
| TACTGTAGAAGAGACAAATG+TGG | 0.655441 | 3.2:-82428568 | MS.gene055508:CDS |
| GCTGTGCTCGGAAAGTTCGT+CGG | 0.656979 | 3.2:-82429916 | MS.gene055508:CDS |
| GAGCATGATAGTAAGCAGCT+GGG | 0.661089 | 3.2:+82428463 | None:intergenic |
| ACTCTGAGGTAAGTGTGAAG+GGG | 0.663378 | 3.2:-82428788 | MS.gene055508:CDS |
| TTCAGCATAATCTCTGCCGG+AGG | 0.675417 | 3.2:+82429959 | None:intergenic |
| AGATTGCAAATCTCATATGG+TGG | 0.675547 | 3.2:-82429855 | MS.gene055508:CDS |
| AACTGATCTGAAGAACTCTG+AGG | 0.714880 | 3.2:-82428802 | MS.gene055508:CDS |
| GCATTGTGAAGCTTGTGCGG+AGG | 0.759739 | 3.2:-82429528 | MS.gene055508:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTAATTTCATTTATCTA+TGG | - | chr3.2:82428461-82428480 | MS.gene055508:CDS | 10.0% |
| !!! | TTTTTTTTTTTTACTATAGT+AGG | - | chr3.2:82429350-82429369 | MS.gene055508:intron | 10.0% |
| !! | ATAAAAGAGAAGTTAAATAT+TGG | + | chr3.2:82429131-82429150 | None:intergenic | 15.0% |
| !!! | ATTGTATAATCTTATTTAGT+AGG | - | chr3.2:82429684-82429703 | MS.gene055508:intron | 15.0% |
| !! | AATTATGTGATTTAATTGAC+CGG | - | chr3.2:82429479-82429498 | MS.gene055508:intron | 20.0% |
| !! | ACAAATTCAATTGGTTAATT+TGG | - | chr3.2:82429217-82429236 | MS.gene055508:intron | 20.0% |
| !! | ACTTAACTAACAAATTCAAT+TGG | - | chr3.2:82429208-82429227 | MS.gene055508:intron | 20.0% |
| !! | ATGGTTAAATCAATTTAATC+CGG | + | chr3.2:82429270-82429289 | None:intergenic | 20.0% |
| !! | ATTATTATTGAAATAAGCAG+TGG | - | chr3.2:82429722-82429741 | MS.gene055508:CDS | 20.0% |
| !!! | AACTAATGTTTTAACAAACT+CGG | + | chr3.2:82429621-82429640 | None:intergenic | 20.0% |
| !!! | ATTGACTTACAAAGAAAAAA+CGG | + | chr3.2:82429304-82429323 | None:intergenic | 20.0% |
| !!! | CTTTTATTTACAAAATCAGA+TGG | - | chr3.2:82429144-82429163 | MS.gene055508:intron | 20.0% |
| !!! | TAAATTGATTTAACCATGAT+TGG | - | chr3.2:82429273-82429292 | MS.gene055508:intron | 20.0% |
| ! | AAACGGATACTAAAAATGAA+TGG | - | chr3.2:82429099-82429118 | MS.gene055508:intron | 25.0% |
| ! | AAGAGAAGTTAAATATTGGA+CGG | + | chr3.2:82429127-82429146 | None:intergenic | 25.0% |
| ! | AATATGTGTACAAGAGAATT+GGG | - | chr3.2:82429856-82429875 | MS.gene055508:CDS | 25.0% |
| ! | AATTTGATTCAGCATTCAAT+TGG | + | chr3.2:82429659-82429678 | None:intergenic | 25.0% |
| ! | GACTTAGTATAGTAAAAAAC+CGG | + | chr3.2:82429538-82429557 | None:intergenic | 25.0% |
| AACAGATTGCAAATCTCATA+TGG | - | chr3.2:82428738-82428757 | MS.gene055508:CDS | 30.0% | |
| ACCAATGTAATTATTACGCA+CGG | - | chr3.2:82429408-82429427 | MS.gene055508:intron | 30.0% | |
| ATACTACTATAATCCATCCA+TGG | - | chr3.2:82430073-82430092 | MS.gene055508:CDS | 30.0% | |
| GAATATGTGTACAAGAGAAT+TGG | - | chr3.2:82429855-82429874 | MS.gene055508:CDS | 30.0% | |
| GCATAATGATTTAATTGGTC+CGG | + | chr3.2:82429501-82429520 | None:intergenic | 30.0% | |
| TTTGTAAGTCAATTATAGCG+TGG | - | chr3.2:82429311-82429330 | MS.gene055508:intron | 30.0% | |
| ! | AGAAAAAAAGCATAACTCCA+CGG | + | chr3.2:82429004-82429023 | None:intergenic | 30.0% |
| ! | TTGGTTTCTTCTTCCTTTTT+CGG | + | chr3.2:82428577-82428596 | None:intergenic | 30.0% |
| AAAAACAGAGGAACCGAAAA+AGG | - | chr3.2:82428561-82428580 | MS.gene055508:CDS | 35.0% | |
| ACATATTCAACCAGCATTGT+TGG | + | chr3.2:82429843-82429862 | None:intergenic | 35.0% | |
| ACCAACTAAATCATTGTGTG+CGG | - | chr3.2:82429585-82429604 | MS.gene055508:intron | 35.0% | |
| AGATTGCAAATCTCATATGG+TGG | - | chr3.2:82428741-82428760 | MS.gene055508:CDS | 35.0% | |
| ATGCAGGATATCCAATTTCT+GGG | + | chr3.2:82430112-82430131 | None:intergenic | 35.0% | |
| CACAATGCATGTGAACTTTA+AGG | + | chr3.2:82429056-82429075 | None:intergenic | 35.0% | |
| TACTGTAGAAGAGACAAATG+TGG | - | chr3.2:82430028-82430047 | MS.gene055508:CDS | 35.0% | |
| TATGCAGGATATCCAATTTC+TGG | + | chr3.2:82430113-82430132 | None:intergenic | 35.0% | |
| TATGCATACAAATCCATGGA+TGG | + | chr3.2:82430089-82430108 | None:intergenic | 35.0% | |
| TCCGTGCGTAATAATTACAT+TGG | + | chr3.2:82429412-82429431 | None:intergenic | 35.0% | |
| TGCGCGCATAATGATTTAAT+TGG | + | chr3.2:82429506-82429525 | None:intergenic | 35.0% | |
| TTAGGAAGAGAAGAAAACAG+AGG | - | chr3.2:82428519-82428538 | MS.gene055508:CDS | 35.0% | |
| TTCTCATCACTGAACATTTG+TGG | + | chr3.2:82430188-82430207 | None:intergenic | 35.0% | |
| TTGTATGCATACCCAGAAAT+TGG | - | chr3.2:82430098-82430117 | MS.gene055508:intron | 35.0% | |
| AAAAACGGCTGAACCAATCA+TGG | + | chr3.2:82429289-82429308 | None:intergenic | 40.0% | |
| AAAAGTTGCTGAGGAAGAGA+AGG | - | chr3.2:82428873-82428892 | MS.gene055508:intron | 40.0% | |
| AACAGAGGAAAGTAAGACAG+AGG | - | chr3.2:82428534-82428553 | MS.gene055508:CDS | 40.0% | |
| AACTGATCTGAAGAACTCTG+AGG | - | chr3.2:82429794-82429813 | MS.gene055508:CDS | 40.0% | |
| ACTCTCTCCAAAACCTTCAA+TGG | + | chr3.2:82428790-82428809 | None:intergenic | 40.0% | |
| ACTTTCAGCATAATCTCTGC+CGG | + | chr3.2:82428643-82428662 | None:intergenic | 40.0% | |
| AGAAGAGACAAATGTGGAAG+AGG | - | chr3.2:82430034-82430053 | MS.gene055508:CDS | 40.0% | |
| AGAGGAGAAAGTTGAAGAAG+TGG | - | chr3.2:82429944-82429963 | MS.gene055508:CDS | 40.0% | |
| AGGACAACAATCACAATCTG+AGG | + | chr3.2:82429036-82429055 | None:intergenic | 40.0% | |
| ATGCTATCGTTTGACTGAAC+CGG | - | chr3.2:82429248-82429267 | MS.gene055508:intron | 40.0% | |
| GAGAAGAAAGAAGAAGGAGA+GGG | - | chr3.2:82429969-82429988 | MS.gene055508:CDS | 40.0% | |
| GAGTTCAGAAGAAGAGTCAT+AGG | - | chr3.2:82428806-82428825 | MS.gene055508:CDS | 40.0% | |
| GATCATGAAGGAAGAGAAAG+TGG | - | chr3.2:82429890-82429909 | MS.gene055508:CDS | 40.0% | |
| GATTTGATCCTTTGAATCCG+TGG | - | chr3.2:82428984-82429003 | MS.gene055508:intron | 40.0% | |
| GTTATCACATCTTCAACACC+TGG | + | chr3.2:82428721-82428740 | None:intergenic | 40.0% | |
| TAAGCAGTGGAATAATGAGC+TGG | - | chr3.2:82429735-82429754 | MS.gene055508:CDS | 40.0% | |
| TCAGAAGAAGAGTCATAGGA+AGG | - | chr3.2:82428810-82428829 | MS.gene055508:CDS | 40.0% | |
| TCCGCACACAATGATTTAGT+TGG | + | chr3.2:82429589-82429608 | None:intergenic | 40.0% | |
| TCTCATATGGTGGTTGTGAA+AGG | - | chr3.2:82428751-82428770 | MS.gene055508:CDS | 40.0% | |
| TCTTCTTTCTTCTCCTCTTC+AGG | + | chr3.2:82428904-82428923 | None:intergenic | 40.0% | |
| TGAAGAGGAGAAGAAAGAAG+AGG | - | chr3.2:82428903-82428922 | MS.gene055508:intron | 40.0% | |
| TGAGAAGAAAGAAGAAGGAG+AGG | - | chr3.2:82429968-82429987 | MS.gene055508:CDS | 40.0% | |
| TGGGTATGCATACAAATCCA+TGG | + | chr3.2:82430093-82430112 | None:intergenic | 40.0% | |
| !! | AACTCTGAGGTAAGTGTGAA+GGG | - | chr3.2:82429807-82429826 | MS.gene055508:CDS | 40.0% |
| !! | ATCTTTTGTTTCCTCTGGCT+TGG | + | chr3.2:82428596-82428615 | None:intergenic | 40.0% |
| !! | GCTTCATCTTTTGTTTCCTC+TGG | + | chr3.2:82428601-82428620 | None:intergenic | 40.0% |
| !!! | CTCCTCTTTTTTCTCTTCCT+CGG | + | chr3.2:82429931-82429950 | None:intergenic | 40.0% |
| !!! | TTTTTTCTCTTCCTCGGCTT+TGG | + | chr3.2:82429925-82429944 | None:intergenic | 40.0% |
| ACATGACGCTGCATGCATTT+GGG | + | chr3.2:82430211-82430230 | None:intergenic | 45.0% | |
| AGAGAAAGCAGAGCCATTGA+AGG | - | chr3.2:82428774-82428793 | MS.gene055508:CDS | 45.0% | |
| AGAGGAAAGTAAGACAGAGG+AGG | - | chr3.2:82428537-82428556 | MS.gene055508:CDS | 45.0% | |
| AGCCGAGGAAGAGAAAAAAG+AGG | - | chr3.2:82429926-82429945 | MS.gene055508:CDS | 45.0% | |
| CATGAAGGAAGAGAAAGTGG+AGG | - | chr3.2:82429893-82429912 | MS.gene055508:CDS | 45.0% | |
| CATGCATTGTGAAGCTTGTG+CGG | - | chr3.2:82429065-82429084 | MS.gene055508:intron | 45.0% | |
| GAAGCATGCAGTGATCATGA+AGG | - | chr3.2:82429878-82429897 | MS.gene055508:CDS | 45.0% | |
| GACAGAGGAGGAAAAAACAG+AGG | - | chr3.2:82428549-82428568 | MS.gene055508:CDS | 45.0% | |
| GAGCATGATAGTAAGCAGCT+GGG | + | chr3.2:82430136-82430155 | None:intergenic | 45.0% | |
| GCATAACTCCACGGATTCAA+AGG | + | chr3.2:82428995-82429014 | None:intergenic | 45.0% | |
| GGTGTATGATCCAACAATGC+TGG | - | chr3.2:82429830-82429849 | MS.gene055508:CDS | 45.0% | |
| GTGCGGAGGAGATCAAAAAA+CGG | - | chr3.2:82429082-82429101 | MS.gene055508:intron | 45.0% | |
| GTGGCTGAGAAGAAAGAAGA+AGG | - | chr3.2:82429963-82429982 | MS.gene055508:CDS | 45.0% | |
| TATGCGCGCAATATCATGTC+CGG | - | chr3.2:82429516-82429535 | MS.gene055508:CDS | 45.0% | |
| TGAGCATGATAGTAAGCAGC+TGG | + | chr3.2:82430137-82430156 | None:intergenic | 45.0% | |
| TGAGGAGGAAAAAGTTGCTG+AGG | - | chr3.2:82428864-82428883 | MS.gene055508:intron | 45.0% | |
| TGCATTGTGAAAGCTGTGCT+CGG | - | chr3.2:82428668-82428687 | MS.gene055508:CDS | 45.0% | |
| TTTCTCCTCTTCTTGTCGCT+TGG | + | chr3.2:82430000-82430019 | None:intergenic | 45.0% | |
| ! | AGCAGAGCCATTGAAGGTTT+TGG | - | chr3.2:82428780-82428799 | MS.gene055508:CDS | 45.0% |
| ! | CGGTCGTTGAAAGATTTTCC+AGG | - | chr3.2:82428700-82428719 | MS.gene055508:CDS | 45.0% |
| !! | ACTCTGAGGTAAGTGTGAAG+GGG | - | chr3.2:82429808-82429827 | MS.gene055508:CDS | 45.0% |
| !! | ATGTAATTGACTCGCAGGAG+TGG | - | chr3.2:82429761-82429780 | MS.gene055508:CDS | 45.0% |
| !! | GAACTCTGAGGTAAGTGTGA+AGG | - | chr3.2:82429806-82429825 | MS.gene055508:CDS | 45.0% |
| !! | GGTTGATGTAATTGACTCGC+AGG | - | chr3.2:82429756-82429775 | MS.gene055508:CDS | 45.0% |
| !! | TCAGCAACTTTTTCCTCCTC+AGG | + | chr3.2:82428865-82428884 | None:intergenic | 45.0% |
| !!! | TTTTTATTTTTTTTTTGTTT+AGG | - | chr3.2:82428501-82428520 | MS.gene055508:CDS | 5.0% |
| CACATGACGCTGCATGCATT+TGG | + | chr3.2:82430212-82430231 | None:intergenic | 50.0% | |
| GAAAGAAGAAGGAGAGGGTG+AGG | - | chr3.2:82429974-82429993 | MS.gene055508:CDS | 50.0% | |
| GAAGGAAGAGAAAGTGGAGG+AGG | - | chr3.2:82429896-82429915 | MS.gene055508:CDS | 50.0% | |
| GGAAGAAGAAACCAAGCCAG+AGG | - | chr3.2:82428582-82428601 | MS.gene055508:CDS | 50.0% | |
| TAGTAAGCAGCTGGGTATGC+AGG | + | chr3.2:82430128-82430147 | None:intergenic | 50.0% | |
| TCACTGAACATTTGTGGCGC+CGG | + | chr3.2:82430182-82430201 | None:intergenic | 50.0% | |
| TTCAGCATAATCTCTGCCGG+AGG | + | chr3.2:82428640-82428659 | None:intergenic | 50.0% | |
| TTTCCTCCTCAGGAGCAGTT+GGG | + | chr3.2:82428855-82428874 | None:intergenic | 50.0% | |
| ! | TTGACTCGCAGGAGTGGAAT+TGG | - | chr3.2:82429767-82429786 | MS.gene055508:CDS | 50.0% |
| ! | TTTTCCTCCTCAGGAGCAGT+TGG | + | chr3.2:82428856-82428875 | None:intergenic | 50.0% |
| !! | CTCTGAGGTAAGTGTGAAGG+GGG | - | chr3.2:82429809-82429828 | MS.gene055508:CDS | 50.0% |
| ACTCGCAGGAGTGGAATTGG+TGG | - | chr3.2:82429770-82429789 | MS.gene055508:CDS | 55.0% | |
| AGAGAAGGCTGCACCTGAAG+AGG | - | chr3.2:82428888-82428907 | MS.gene055508:intron | 55.0% | |
| AGCATAATCTCTGCCGGAGG+CGG | + | chr3.2:82428637-82428656 | None:intergenic | 55.0% | |
| GCATTGTGAAGCTTGTGCGG+AGG | - | chr3.2:82429068-82429087 | MS.gene055508:intron | 55.0% | |
| GCTGTGCTCGGAAAGTTCGT+CGG | - | chr3.2:82428680-82428699 | MS.gene055508:CDS | 55.0% | |
| TCCTCAGGAGCAGTTGGGAT+CGG | + | chr3.2:82428850-82428869 | None:intergenic | 55.0% | |
| TGAGGCCAAGCGACAAGAAG+AGG | - | chr3.2:82429992-82430011 | MS.gene055508:CDS | 55.0% | |
| ATAATCTCTGCCGGAGGCGG+TGG | + | chr3.2:82428634-82428653 | None:intergenic | 60.0% | |
| GATCCCAACTGCTCCTGAGG+AGG | - | chr3.2:82428849-82428868 | MS.gene055508:intron | 60.0% | |
| TCCGATCCCAACTGCTCCTG+AGG | - | chr3.2:82428846-82428865 | MS.gene055508:intron | 60.0% | |
| TGATGTTCCTCCACCGCCTC+CGG | - | chr3.2:82428621-82428640 | MS.gene055508:CDS | 60.0% | |
| ! | CTGAACATTTGTGGCGCCGG+TGG | + | chr3.2:82430179-82430198 | None:intergenic | 60.0% |
| !! | AACATTTGTGGCGCCGGTGG+CGG | + | chr3.2:82430176-82430195 | None:intergenic | 60.0% |
| ATACCCTCCACCACCGCCAC+CGG | - | chr3.2:82430160-82430179 | MS.gene055508:intron | 65.0% | |
| GGAGGAGGAAGCCAAAGCCG+AGG | - | chr3.2:82429911-82429930 | MS.gene055508:CDS | 65.0% | |
| ATCTCTGCCGGAGGCGGTGG+AGG | + | chr3.2:82428631-82428650 | None:intergenic | 70.0% | |
| !! | ATTTGTGGCGCCGGTGGCGG+TGG | + | chr3.2:82430173-82430192 | None:intergenic | 70.0% |
| !!! | GCGCCGGTGGCGGTGGTGGA+GGG | + | chr3.2:82430166-82430185 | None:intergenic | 80.0% |
| !!! | TGTGGCGCCGGTGGCGGTGG+TGG | + | chr3.2:82430170-82430189 | None:intergenic | 80.0% |
| !!! | GGCGCCGGTGGCGGTGGTGG+AGG | + | chr3.2:82430167-82430186 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 82428386 | 82430232 | 82428386 | ID=MS.gene055508 |
| chr3.2 | mRNA | 82428386 | 82430232 | 82428386 | ID=MS.gene055508.t1;Parent=MS.gene055508 |
| chr3.2 | exon | 82430224 | 82430232 | 82430224 | ID=MS.gene055508.t1.exon1;Parent=MS.gene055508.t1 |
| chr3.2 | CDS | 82430224 | 82430232 | 82430224 | ID=cds.MS.gene055508.t1;Parent=MS.gene055508.t1 |
| chr3.2 | exon | 82429694 | 82430095 | 82429694 | ID=MS.gene055508.t1.exon2;Parent=MS.gene055508.t1 |
| chr3.2 | CDS | 82429694 | 82430095 | 82429694 | ID=cds.MS.gene055508.t1;Parent=MS.gene055508.t1 |
| chr3.2 | exon | 82429498 | 82429585 | 82429498 | ID=MS.gene055508.t1.exon3;Parent=MS.gene055508.t1 |
| chr3.2 | CDS | 82429498 | 82429585 | 82429498 | ID=cds.MS.gene055508.t1;Parent=MS.gene055508.t1 |
| chr3.2 | exon | 82428386 | 82428840 | 82428386 | ID=MS.gene055508.t1.exon4;Parent=MS.gene055508.t1 |
| chr3.2 | CDS | 82428386 | 82428840 | 82428386 | ID=cds.MS.gene055508.t1;Parent=MS.gene055508.t1 |
| Gene Sequence |
| Protein sequence |
