Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06233.t1 | PNY16350.1 | 78.7 | 272 | 56 | 2 | 45 | 315 | 45 | 315 | 3.60E-69 | 271.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06233.t1 | Q9C5D3 | 69.8 | 162 | 47 | 1 | 46 | 205 | 76 | 237 | 1.2e-44 | 181.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06233.t1 | A0A2K3PM38 | 78.7 | 272 | 56 | 2 | 45 | 315 | 45 | 315 | 2.6e-69 | 271.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055509 | MS.gene06233 | 0.945191 | 4.84E-104 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06233.t1 | MTR_3g099030 | 73.944 | 284 | 34 | 3 | 32 | 315 | 23 | 266 | 2.25e-110 | 321 |
| MS.gene06233.t1 | MTR_3g099040 | 80.986 | 284 | 48 | 3 | 33 | 315 | 24 | 302 | 1.56e-101 | 300 |
| MS.gene06233.t1 | MTR_8g096700 | 54.138 | 290 | 99 | 9 | 42 | 315 | 50 | 321 | 3.25e-79 | 244 |
| MS.gene06233.t1 | MTR_4g006650 | 85.714 | 133 | 18 | 1 | 33 | 164 | 157 | 289 | 1.29e-54 | 181 |
| MS.gene06233.t1 | MTR_2g026685 | 46.377 | 276 | 108 | 4 | 42 | 315 | 32 | 269 | 1.82e-44 | 153 |
| MS.gene06233.t1 | MTR_2g026685 | 46.377 | 276 | 108 | 4 | 42 | 315 | 33 | 270 | 1.86e-44 | 153 |
| MS.gene06233.t1 | MTR_2g026685 | 46.067 | 267 | 104 | 4 | 51 | 315 | 1 | 229 | 2.59e-42 | 146 |
| MS.gene06233.t1 | MTR_3g093020 | 36.039 | 308 | 167 | 7 | 10 | 314 | 3 | 283 | 1.22e-38 | 138 |
| MS.gene06233.t1 | MTR_3g435930 | 31.985 | 272 | 122 | 6 | 45 | 315 | 28 | 237 | 9.32e-33 | 121 |
| MS.gene06233.t1 | MTR_4g057765 | 31.429 | 280 | 158 | 8 | 46 | 315 | 69 | 324 | 1.75e-27 | 109 |
| MS.gene06233.t1 | MTR_5g069180 | 36.646 | 161 | 90 | 3 | 46 | 204 | 56 | 206 | 5.30e-27 | 108 |
| MS.gene06233.t1 | MTR_2g095480 | 34.146 | 164 | 105 | 2 | 42 | 204 | 64 | 225 | 2.51e-24 | 101 |
| MS.gene06233.t1 | MTR_1g063210 | 30.028 | 363 | 176 | 9 | 1 | 315 | 1 | 333 | 3.66e-24 | 100 |
| MS.gene06233.t1 | MTR_0041s0140 | 33.692 | 279 | 116 | 11 | 45 | 295 | 15 | 252 | 8.15e-18 | 81.6 |
| MS.gene06233.t1 | MTR_8g010540 | 34.416 | 154 | 95 | 5 | 51 | 204 | 37 | 184 | 9.21e-18 | 81.6 |
| MS.gene06233.t1 | MTR_7g101930 | 33.692 | 279 | 116 | 11 | 45 | 295 | 15 | 252 | 8.41e-17 | 80.1 |
| MS.gene06233.t1 | MTR_8g018747 | 44.118 | 68 | 38 | 0 | 137 | 204 | 17 | 84 | 6.49e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06233.t1 | AT5G50740 | 46.290 | 283 | 112 | 5 | 45 | 315 | 29 | 283 | 3.84e-71 | 222 |
| MS.gene06233.t1 | AT5G50740 | 46.290 | 283 | 112 | 5 | 45 | 315 | 29 | 283 | 3.84e-71 | 222 |
| MS.gene06233.t1 | AT5G50740 | 46.290 | 283 | 112 | 5 | 45 | 315 | 36 | 290 | 5.13e-71 | 222 |
| MS.gene06233.t1 | AT5G63530 | 65.244 | 164 | 55 | 2 | 44 | 205 | 59 | 222 | 1.87e-60 | 196 |
| MS.gene06233.t1 | AT5G63530 | 65.244 | 164 | 55 | 2 | 44 | 205 | 74 | 237 | 2.69e-60 | 196 |
| MS.gene06233.t1 | AT5G50740 | 59.016 | 122 | 49 | 1 | 45 | 165 | 29 | 150 | 4.63e-43 | 146 |
| MS.gene06233.t1 | AT5G50740 | 59.016 | 122 | 49 | 1 | 45 | 165 | 36 | 157 | 1.00e-42 | 145 |
| MS.gene06233.t1 | AT3G02960 | 33.333 | 303 | 131 | 7 | 19 | 315 | 9 | 246 | 3.31e-41 | 144 |
| MS.gene06233.t1 | AT5G24580 | 35.294 | 272 | 163 | 5 | 45 | 314 | 58 | 318 | 1.15e-32 | 123 |
| MS.gene06233.t1 | AT5G24580 | 35.294 | 272 | 163 | 5 | 45 | 314 | 58 | 318 | 1.15e-32 | 123 |
| MS.gene06233.t1 | AT5G24580 | 35.294 | 272 | 163 | 5 | 45 | 314 | 57 | 317 | 1.37e-32 | 123 |
| MS.gene06233.t1 | AT5G24580 | 34.191 | 272 | 163 | 6 | 45 | 314 | 58 | 315 | 5.33e-29 | 113 |
| MS.gene06233.t1 | AT2G36950 | 32.153 | 339 | 158 | 10 | 45 | 315 | 52 | 386 | 1.83e-24 | 102 |
| MS.gene06233.t1 | AT5G03380 | 27.000 | 400 | 183 | 10 | 15 | 315 | 3 | 392 | 2.85e-23 | 99.4 |
| MS.gene06233.t1 | AT5G03380 | 26.230 | 366 | 172 | 8 | 47 | 315 | 1 | 365 | 1.12e-21 | 94.4 |
| MS.gene06233.t1 | AT5G24580 | 34.025 | 241 | 146 | 5 | 76 | 314 | 2 | 231 | 2.38e-21 | 90.9 |
| MS.gene06233.t1 | AT1G29000 | 33.962 | 159 | 101 | 2 | 49 | 204 | 21 | 178 | 2.06e-20 | 89.7 |
| MS.gene06233.t1 | AT1G29000 | 33.962 | 159 | 101 | 2 | 49 | 204 | 21 | 178 | 2.06e-20 | 89.7 |
| MS.gene06233.t1 | AT5G60800 | 27.152 | 302 | 151 | 7 | 41 | 315 | 24 | 283 | 1.04e-15 | 76.3 |
| MS.gene06233.t1 | AT5G60800 | 26.821 | 302 | 152 | 7 | 41 | 315 | 24 | 283 | 7.27e-15 | 74.3 |
Find 81 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAACAGAGGAACCGAAAA+AGG | 0.239412 | 3.1:-78916966 | MS.gene06233:CDS |
| AGCAGAGCCATTGAAGGTTT+TGG | 0.240236 | 3.1:-78916735 | MS.gene06233:CDS |
| CACATGACACTGCAAGCATT+TGG | 0.293855 | 3.1:+78915057 | None:intergenic |
| TGTTCTTTCTTCTTCTCTTC+AGG | 0.306339 | 3.1:+78916614 | None:intergenic |
| GGCGGCGGTGGCGGTGGTGG+AGG | 0.314210 | 3.1:+78915102 | None:intergenic |
| TTTCTTCTCTTCCACAGCTT+TGG | 0.317843 | 3.1:+78915344 | None:intergenic |
| GAATATGTGTACAAGCGAAT+TGG | 0.353264 | 3.1:-78915411 | MS.gene06233:CDS |
| AAGAGGAGAAGAAGGAAGAA+GGG | 0.373502 | 3.1:-78915323 | MS.gene06233:CDS |
| ATCTCTGCTGGAGGCGGCGG+AGG | 0.378153 | 3.1:+78916887 | None:intergenic |
| ATTTGTGGCGGCGGTGGCGG+TGG | 0.378901 | 3.1:+78915096 | None:intergenic |
| GAGTTCAGAAGAAGAGTCAT+AGG | 0.384792 | 3.1:-78916709 | MS.gene06233:CDS |
| TGTGGCGGCGGTGGCGGTGG+TGG | 0.385547 | 3.1:+78915099 | None:intergenic |
| TTTCCTCCTCAGGAGCGTTT+GGG | 0.390412 | 3.1:+78916663 | None:intergenic |
| GTTTCATCTTTAGTTTCCTC+TGG | 0.411965 | 3.1:+78916917 | None:intergenic |
| AAAGAGGAGAAGAAGGAAGA+AGG | 0.412505 | 3.1:-78915324 | MS.gene06233:CDS |
| AACATTTGTGGCGGCGGTGG+CGG | 0.415540 | 3.1:+78915093 | None:intergenic |
| ACATGACACTGCAAGCATTT+GGG | 0.419372 | 3.1:+78915058 | None:intergenic |
| AGAAGATACGAAGGTGGAGG+AGG | 0.427083 | 3.1:-78915226 | MS.gene06233:CDS |
| AGAGAAGAAAGAGGAGAAGA+AGG | 0.435926 | 3.1:-78915331 | MS.gene06233:CDS |
| CTGAACATTTGTGGCGGCGG+TGG | 0.436609 | 3.1:+78915090 | None:intergenic |
| ACATATTCAACCAACATTGC+TGG | 0.437843 | 3.1:+78915426 | None:intergenic |
| AATATGTGTACAAGCGAATT+GGG | 0.445516 | 3.1:-78915410 | MS.gene06233:CDS |
| TGAGGCCAAGCCACAAGAAA+AGG | 0.446729 | 3.1:-78915268 | MS.gene06233:CDS |
| GAAAACAAGGAGAAGAAAGA+AGG | 0.449075 | 3.1:-78915297 | MS.gene06233:CDS |
| GAAGAAAGAAGGAGAGGGTG+AGG | 0.455906 | 3.1:-78915286 | MS.gene06233:CDS |
| AAAATCTCTGCTGGAGGCGG+CGG | 0.459777 | 3.1:+78916884 | None:intergenic |
| GGAGAAGAAGGAAGAAGGGA+AGG | 0.461035 | 3.1:-78915319 | MS.gene06233:CDS |
| TTCTCATCACTGAACATTTG+TGG | 0.463049 | 3.1:+78915081 | None:intergenic |
| GCGGCGGTGGCGGTGGTGGA+GGG | 0.465585 | 3.1:+78915103 | None:intergenic |
| GGTGGCGGTGGTGGAGGGTA+TGG | 0.467164 | 3.1:+78915108 | None:intergenic |
| AACAGATTGCAAATCTCATA+TGG | 0.468470 | 3.1:-78916777 | MS.gene06233:CDS |
| TCCTCAGGAGCGTTTGGGAT+CGG | 0.469426 | 3.1:+78916668 | None:intergenic |
| GGAAGAAGGGAAGGAAAACA+AGG | 0.471254 | 3.1:-78915310 | MS.gene06233:CDS |
| ACGTTCAGCAAAATCTCTGC+TGG | 0.473784 | 3.1:+78916875 | None:intergenic |
| TTGATTGGCAGGAGTGGAAT+GGG | 0.474045 | 3.1:-78915499 | MS.gene06233:intron |
| TATGGTTGATAGTAAGCAGC+TGG | 0.478543 | 3.1:+78915126 | None:intergenic |
| ACTCTCTCCAAAACCTTCAA+TGG | 0.491679 | 3.1:+78916728 | None:intergenic |
| AGAGAAAGCAGAGCCATTGA+AGG | 0.492377 | 3.1:-78916741 | MS.gene06233:CDS |
| TATGCATGATATGCTATTGT+TGG | 0.501666 | 3.1:+78915150 | None:intergenic |
| TGAAGAGAAGAAGAAAGAAC+AGG | 0.508892 | 3.1:-78916612 | MS.gene06233:intron |
| CAAGGAGAAGAAAGAAGGAG+AGG | 0.516607 | 3.1:-78915292 | MS.gene06233:CDS |
| AAGGAGAAGAAAGAAGGAGA+GGG | 0.528289 | 3.1:-78915291 | MS.gene06233:CDS |
| GGGTATGCATACATATTCAT+TGG | 0.529467 | 3.1:+78915171 | None:intergenic |
| AGCTTTGAGGTAAGCGTGAA+GGG | 0.533924 | 3.1:-78915459 | MS.gene06233:CDS |
| AGCAAAATCTCTGCTGGAGG+CGG | 0.541141 | 3.1:+78916881 | None:intergenic |
| TCTCATATGGTGGTTGTGAA+AGG | 0.544258 | 3.1:-78916764 | MS.gene06233:CDS |
| AGCTAATCTGAAGAGCTTTG+AGG | 0.546612 | 3.1:-78915472 | MS.gene06233:CDS |
| ATCATTTAAGACCTCTCCCA+TGG | 0.548646 | 3.1:+78917113 | None:intergenic |
| ATGCATGATATGCTATTGTT+GGG | 0.553729 | 3.1:+78915151 | None:intergenic |
| ATTGATTGGCAGGAGTGGAA+TGG | 0.554760 | 3.1:-78915500 | MS.gene06233:intron |
| TATGCATACATATTCATTGG+TGG | 0.555500 | 3.1:+78915174 | None:intergenic |
| TTAAGAACAGTAACAATCTG+AGG | 0.568299 | 3.1:+78916466 | None:intergenic |
| TCACTGAACATTTGTGGCGG+CGG | 0.568767 | 3.1:+78915087 | None:intergenic |
| GAGCTTTGAGGTAAGCGTGA+AGG | 0.571500 | 3.1:-78915460 | MS.gene06233:CDS |
| AAAAGGATACTGAAAATGAA+GGG | 0.576732 | 3.1:-78916403 | MS.gene06233:intron |
| TATAGAAGATACGAAGGTGG+AGG | 0.580399 | 3.1:-78915229 | MS.gene06233:CDS |
| AGTGTATGATCCAGCAATGT+TGG | 0.580598 | 3.1:-78915436 | MS.gene06233:CDS |
| GAAGGAAGAGAAAGTTGAGG+AGG | 0.581031 | 3.1:-78915370 | MS.gene06233:CDS |
| GATCCCAAACGCTCCTGAGG+AGG | 0.583434 | 3.1:-78916666 | MS.gene06233:CDS |
| TCCGATCCCAAACGCTCCTG+AGG | 0.585864 | 3.1:-78916669 | MS.gene06233:CDS |
| TGCATTGTGAAGGCTGTGCT+CGG | 0.590749 | 3.1:-78916847 | MS.gene06233:CDS |
| GTTATCACATCTTCAACACC+TGG | 0.604591 | 3.1:+78916797 | None:intergenic |
| TGTGAAGGAAGAGAAAGTTG+AGG | 0.607187 | 3.1:-78915373 | MS.gene06233:CDS |
| AGCTGTGGAAGAGAAGAAAG+AGG | 0.610466 | 3.1:-78915340 | MS.gene06233:CDS |
| ATTGGCAGGAGTGGAATGGG+TGG | 0.615630 | 3.1:-78915496 | MS.gene06233:intron |
| TCAGAAGAAGAGTCATAGGA+AGG | 0.616480 | 3.1:-78916705 | MS.gene06233:CDS |
| GGAACAAGAAACCAAGCCAG+AGG | 0.617538 | 3.1:-78916945 | MS.gene06233:CDS |
| TGAGGAGGAAGCCAAAGCTG+TGG | 0.619023 | 3.1:-78915355 | MS.gene06233:CDS |
| GAAACTTGAAACCATGGGAG+AGG | 0.620100 | 3.1:-78917124 | None:intergenic |
| AACAGAGGAAACCAAAACAG+AGG | 0.620182 | 3.1:-78916978 | MS.gene06233:CDS |
| TTCAGCAAAATCTCTGCTGG+AGG | 0.623839 | 3.1:+78916878 | None:intergenic |
| GCTGTGCTCGGAAAGTTCGT+CGG | 0.640052 | 3.1:-78916835 | MS.gene06233:CDS |
| AACGTGTTCATGCATTGTGA+AGG | 0.641239 | 3.1:-78916857 | MS.gene06233:CDS |
| TCATCACTGAACATTTGTGG+CGG | 0.641634 | 3.1:+78915084 | None:intergenic |
| GCATTGTGAAGCTTGTGCAC+AGG | 0.645456 | 3.1:-78916434 | MS.gene06233:CDS |
| ATGGTTGATAGTAAGCAGCT+GGG | 0.661089 | 3.1:+78915127 | None:intergenic |
| AACTATTATAGAAGATACGA+AGG | 0.664418 | 3.1:-78915235 | MS.gene06233:CDS |
| AGATTGCAAATCTCATATGG+TGG | 0.675547 | 3.1:-78916774 | MS.gene06233:CDS |
| TATTATAGAAGATACGAAGG+TGG | 0.691283 | 3.1:-78915232 | MS.gene06233:CDS |
| TTAGGAAGAACAGAAAACAG+AGG | 0.710100 | 3.1:-78916993 | MS.gene06233:intron |
| GAAGCATGCAGTGATTGTGA+AGG | 0.719800 | 3.1:-78915388 | MS.gene06233:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAGAGTTAAATAT+TGG | + | chr3.1:78915796-78915815 | None:intergenic | 10.0% |
| !!! | TTTTTGTTTACAAAATTATA+TGG | - | chr3.1:78915833-78915852 | MS.gene06233:intron | 10.0% |
| !!! | ATTGTATTTTCATTTTTTGT+TGG | - | chr3.1:78915108-78915127 | MS.gene06233:CDS | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | - | chr3.1:78915987-78916006 | MS.gene06233:intron | 15.0% |
| !! | AAATTATCCTTGTTAACTAT+TGG | - | chr3.1:78915963-78915982 | MS.gene06233:intron | 20.0% |
| !! | AATAGTTAACAAGGATAATT+TGG | + | chr3.1:78915964-78915983 | None:intergenic | 20.0% |
| !! | AATGATTAAAAGAAAGAGAA+TGG | - | chr3.1:78915930-78915949 | MS.gene06233:intron | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr3.1:78916050-78916069 | MS.gene06233:intron | 20.0% |
| !! | AGTTGATTGATATAATTGAT+TGG | - | chr3.1:78916653-78916672 | MS.gene06233:CDS | 20.0% |
| !! | CTAAGTATAGTAAAAAAAGT+TGG | + | chr3.1:78916464-78916483 | None:intergenic | 20.0% |
| !!! | ACTAATGTTTTACTAAAAAC+TGG | + | chr3.1:78916555-78916574 | None:intergenic | 20.0% |
| !!! | TGGTTGTTTTTATTTTGTTT+AGG | - | chr3.1:78915156-78915175 | MS.gene06233:CDS | 20.0% |
| ! | AAAAAGGATACTGAAAATGA+AGG | - | chr3.1:78915763-78915782 | MS.gene06233:intron | 25.0% |
| ! | AAAAGGATACTGAAAATGAA+GGG | - | chr3.1:78915764-78915783 | MS.gene06233:intron | 25.0% |
| ! | AAACTAACCAATAGTTAACA+AGG | + | chr3.1:78915973-78915992 | None:intergenic | 25.0% |
| ! | AACTATTATAGAAGATACGA+AGG | - | chr3.1:78916932-78916951 | MS.gene06233:CDS | 25.0% |
| ! | TACAATGATTTGAGAAACAA+AGG | + | chr3.1:78915094-78915113 | None:intergenic | 25.0% |
| ! | TATAGTAAAAAAAGTTGGCA+TGG | + | chr3.1:78916459-78916478 | None:intergenic | 25.0% |
| !! | AAAAGAAAAGCATAATTCCA+CGG | + | chr3.1:78915656-78915675 | None:intergenic | 25.0% |
| !!! | ATTCTCAGCATCTTTTATTT+TGG | - | chr3.1:78915136-78915155 | MS.gene06233:CDS | 25.0% |
| AAAAACTGTTGAGGAAGATA+AGG | - | chr3.1:78915525-78915544 | MS.gene06233:intron | 30.0% | |
| AAAAATGACATGATATTCCG+CGG | + | chr3.1:78916318-78916337 | None:intergenic | 30.0% | |
| AACAGATTGCAAATCTCATA+TGG | - | chr3.1:78915390-78915409 | MS.gene06233:CDS | 30.0% | |
| AATATGTGTACAAGCGAATT+GGG | - | chr3.1:78916757-78916776 | MS.gene06233:CDS | 30.0% | |
| AATCAATTAAATCATTCGCG+TGG | - | chr3.1:78916429-78916448 | MS.gene06233:CDS | 30.0% | |
| ATGCATGATATGCTATTGTT+GGG | + | chr3.1:78917019-78917038 | None:intergenic | 30.0% | |
| GATTGATATAATTGATTGGC+AGG | - | chr3.1:78916657-78916676 | MS.gene06233:CDS | 30.0% | |
| TACGCACGTAATGATTTAAT+TGG | + | chr3.1:78916523-78916542 | None:intergenic | 30.0% | |
| TATGCATACATATTCATTGG+TGG | + | chr3.1:78916996-78917015 | None:intergenic | 30.0% | |
| TATGCATGATATGCTATTGT+TGG | + | chr3.1:78917020-78917039 | None:intergenic | 30.0% | |
| TATTATAGAAGATACGAAGG+TGG | - | chr3.1:78916935-78916954 | MS.gene06233:CDS | 30.0% | |
| TTAAGAACAGTAACAATCTG+AGG | + | chr3.1:78915704-78915723 | None:intergenic | 30.0% | |
| ! | ACATTAGTTTGAATCCAAAG+TGG | - | chr3.1:78916567-78916586 | MS.gene06233:intron | 30.0% |
| ! | TTGGTTTCTTGTTCCTTTTT+CGG | + | chr3.1:78915217-78915236 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr3.1:78916099-78916080 | None:intergenic | 30.0% |
| AAAATGACATGATATTCCGC+GGG | + | chr3.1:78916317-78916336 | None:intergenic | 35.0% | |
| ACATATTCAACCAACATTGC+TGG | + | chr3.1:78916744-78916763 | None:intergenic | 35.0% | |
| AGATTGCAAATCTCATATGG+TGG | - | chr3.1:78915393-78915412 | MS.gene06233:CDS | 35.0% | |
| ATATAATTGATTGGCAGGAG+TGG | - | chr3.1:78916662-78916681 | MS.gene06233:CDS | 35.0% | |
| GAAAACAAGGAGAAGAAAGA+AGG | - | chr3.1:78916870-78916889 | MS.gene06233:CDS | 35.0% | |
| GAATATGTGTACAAGCGAAT+TGG | - | chr3.1:78916756-78916775 | MS.gene06233:CDS | 35.0% | |
| GGGTATGCATACATATTCAT+TGG | + | chr3.1:78916999-78917018 | None:intergenic | 35.0% | |
| TGAAGAGAAGAAGAAAGAAC+AGG | - | chr3.1:78915555-78915574 | MS.gene06233:intron | 35.0% | |
| TGTTCTTTCTTCTTCTCTTC+AGG | + | chr3.1:78915556-78915575 | None:intergenic | 35.0% | |
| TTAGGAAGAACAGAAAACAG+AGG | - | chr3.1:78915174-78915193 | MS.gene06233:CDS | 35.0% | |
| TTCTCATCACTGAACATTTG+TGG | + | chr3.1:78917089-78917108 | None:intergenic | 35.0% | |
| ! | GATTTGATCCTTTTAATCCG+TGG | - | chr3.1:78915636-78915655 | MS.gene06233:intron | 35.0% |
| ! | GCATAATTCCACGGATTAAA+AGG | + | chr3.1:78915647-78915666 | None:intergenic | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | - | chr3.1:78916012-78916031 | MS.gene06233:intron | 35.0% |
| ! | GTTTCATCTTTAGTTTCCTC+TGG | + | chr3.1:78915253-78915272 | None:intergenic | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | - | chr3.1:78916016-78916035 | MS.gene06233:intron | 35.0% |
| ! | TTGATCTAACATTGCCACTT+TGG | + | chr3.1:78916584-78916603 | None:intergenic | 35.0% |
| !!! | GACACTCATTTTGAAACAGA+GGG | - | chr3.1:78916120-78916139 | MS.gene06233:intron | 35.0% |
| AAAGAGGAGAAGAAGGAAGA+AGG | - | chr3.1:78916843-78916862 | MS.gene06233:CDS | 40.0% | |
| AACAGAGGAAACCAAAACAG+AGG | - | chr3.1:78915189-78915208 | MS.gene06233:CDS | 40.0% | |
| AACGTGTTCATGCATTGTGA+AGG | - | chr3.1:78915310-78915329 | MS.gene06233:CDS | 40.0% | |
| AAGAGGAGAAGAAGGAAGAA+GGG | - | chr3.1:78916844-78916863 | MS.gene06233:CDS | 40.0% | |
| AAGGAGAAGAAAGAAGGAGA+GGG | - | chr3.1:78916876-78916895 | MS.gene06233:CDS | 40.0% | |
| ACATGACACTGCAAGCATTT+GGG | + | chr3.1:78917112-78917131 | None:intergenic | 40.0% | |
| ACCAATTACATTATTGCCCG+CGG | - | chr3.1:78916298-78916317 | MS.gene06233:intron | 40.0% | |
| ACTCTCTCCAAAACCTTCAA+TGG | + | chr3.1:78915442-78915461 | None:intergenic | 40.0% | |
| AGAGAAGAAAGAGGAGAAGA+AGG | - | chr3.1:78916836-78916855 | MS.gene06233:CDS | 40.0% | |
| AGCTAATCTGAAGAGCTTTG+AGG | - | chr3.1:78916695-78916714 | MS.gene06233:CDS | 40.0% | |
| AGTGTATGATCCAGCAATGT+TGG | - | chr3.1:78916731-78916750 | MS.gene06233:CDS | 40.0% | |
| CAAAACAGAGGAACCGAAAA+AGG | - | chr3.1:78915201-78915220 | MS.gene06233:CDS | 40.0% | |
| GAGTTCAGAAGAAGAGTCAT+AGG | - | chr3.1:78915458-78915477 | MS.gene06233:CDS | 40.0% | |
| GTGCACAGGAGATCAAAAAA+AGG | - | chr3.1:78915747-78915766 | MS.gene06233:intron | 40.0% | |
| GTTATCACATCTTCAACACC+TGG | + | chr3.1:78915373-78915392 | None:intergenic | 40.0% | |
| TATAGAAGATACGAAGGTGG+AGG | - | chr3.1:78916938-78916957 | MS.gene06233:CDS | 40.0% | |
| TCAGAAGAAGAGTCATAGGA+AGG | - | chr3.1:78915462-78915481 | MS.gene06233:CDS | 40.0% | |
| TCATCACTGAACATTTGTGG+CGG | + | chr3.1:78917086-78917105 | None:intergenic | 40.0% | |
| TCTCATATGGTGGTTGTGAA+AGG | - | chr3.1:78915403-78915422 | MS.gene06233:CDS | 40.0% | |
| TGAGGAGGAAAAAACTGTTG+AGG | - | chr3.1:78915516-78915535 | MS.gene06233:intron | 40.0% | |
| TGTGAAGGAAGAGAAAGTTG+AGG | - | chr3.1:78916794-78916813 | MS.gene06233:CDS | 40.0% | |
| TTTCTTCTCTTCCACAGCTT+TGG | + | chr3.1:78916826-78916845 | None:intergenic | 40.0% | |
| ! | AACAATCTGAGGCTGCAAAT+GGG | + | chr3.1:78915693-78915712 | None:intergenic | 40.0% |
| ! | GTCTCTTTCTCCTTTTCTTG+TGG | + | chr3.1:78916912-78916931 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | - | chr3.1:78916015-78916034 | MS.gene06233:intron | 40.0% |
| ! | TAACAATCTGAGGCTGCAAA+TGG | + | chr3.1:78915694-78915713 | None:intergenic | 40.0% |
| ! | TTTCTCCTTTTCTTGTGGCT+TGG | + | chr3.1:78916907-78916926 | None:intergenic | 40.0% |
| !! | ATGGTTGATAGTAAGCAGCT+GGG | + | chr3.1:78917043-78917062 | None:intergenic | 40.0% |
| !! | TATGGTTGATAGTAAGCAGC+TGG | + | chr3.1:78917044-78917063 | None:intergenic | 40.0% |
| !!! | CGACACTCATTTTGAAACAG+AGG | - | chr3.1:78916119-78916138 | MS.gene06233:intron | 40.0% |
| !!! | CTTTTTCGGTTCCTCTGTTT+TGG | + | chr3.1:78915203-78915222 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr3.1:78915877-78915896 | None:intergenic | 40.0% |
| !!! | TCAACAGTTTTTTCCTCCTC+AGG | + | chr3.1:78915517-78915536 | None:intergenic | 40.0% |
| ACATGATATTCCGCGCATGA+CGG | + | chr3.1:78916219-78916238 | None:intergenic | 45.0% | |
| ACGTTCAGCAAAATCTCTGC+TGG | + | chr3.1:78915295-78915314 | None:intergenic | 45.0% | |
| AGAGAAAGCAGAGCCATTGA+AGG | - | chr3.1:78915426-78915445 | MS.gene06233:CDS | 45.0% | |
| AGCTGTGGAAGAGAAGAAAG+AGG | - | chr3.1:78916827-78916846 | MS.gene06233:CDS | 45.0% | |
| ATTGATTGGCAGGAGTGGAA+TGG | - | chr3.1:78916667-78916686 | MS.gene06233:CDS | 45.0% | |
| CAAGGAGAAGAAAGAAGGAG+AGG | - | chr3.1:78916875-78916894 | MS.gene06233:CDS | 45.0% | |
| CACATGACACTGCAAGCATT+TGG | + | chr3.1:78917113-78917132 | None:intergenic | 45.0% | |
| GAAGCATGCAGTGATTGTGA+AGG | - | chr3.1:78916779-78916798 | MS.gene06233:CDS | 45.0% | |
| GAAGGAAGAGAAAGTTGAGG+AGG | - | chr3.1:78916797-78916816 | MS.gene06233:CDS | 45.0% | |
| GGAAGAAGGGAAGGAAAACA+AGG | - | chr3.1:78916857-78916876 | MS.gene06233:CDS | 45.0% | |
| TACAGCGCGGAATATCATGT+CGG | - | chr3.1:78916182-78916201 | MS.gene06233:intron | 45.0% | |
| TATTCCGCGCTGTATTAGTC+TGG | + | chr3.1:78916176-78916195 | None:intergenic | 45.0% | |
| TCATGCGCGGAATATCATGT+TGG | - | chr3.1:78916219-78916238 | MS.gene06233:intron | 45.0% | |
| TCCGCGGGCAATAATGTAAT+TGG | + | chr3.1:78916302-78916321 | None:intergenic | 45.0% | |
| TTCAGCAAAATCTCTGCTGG+AGG | + | chr3.1:78915292-78915311 | None:intergenic | 45.0% | |
| TTGATTGGCAGGAGTGGAAT+GGG | - | chr3.1:78916668-78916687 | MS.gene06233:CDS | 45.0% | |
| ! | AGCAGAGCCATTGAAGGTTT+TGG | - | chr3.1:78915432-78915451 | MS.gene06233:CDS | 45.0% |
| ! | CGGTCGTTGAAAGATTTTCC+AGG | - | chr3.1:78915352-78915371 | MS.gene06233:CDS | 45.0% |
| !! | AGCTTTGAGGTAAGCGTGAA+GGG | - | chr3.1:78916708-78916727 | MS.gene06233:CDS | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr3.1:78915878-78915897 | None:intergenic | 45.0% |
| !!! | GTTTCCTCTGGTTTTTCCTC+TGG | + | chr3.1:78915241-78915260 | None:intergenic | 45.0% |
| AGAAGATACGAAGGTGGAGG+AGG | - | chr3.1:78916941-78916960 | MS.gene06233:CDS | 50.0% | |
| AGCAAAATCTCTGCTGGAGG+CGG | + | chr3.1:78915289-78915308 | None:intergenic | 50.0% | |
| ATGATATTCCGCGCATGACG+GGG | + | chr3.1:78916217-78916236 | None:intergenic | 50.0% | |
| CAAGCCAGAGGAAAAACCAG+AGG | - | chr3.1:78915234-78915253 | MS.gene06233:CDS | 50.0% | |
| CAGACCAGACTAATACAGCG+CGG | - | chr3.1:78916169-78916188 | MS.gene06233:intron | 50.0% | |
| CATGATATTCCGCGCATGAC+GGG | + | chr3.1:78916218-78916237 | None:intergenic | 50.0% | |
| GAAGAAAGAAGGAGAGGGTG+AGG | - | chr3.1:78916881-78916900 | MS.gene06233:CDS | 50.0% | |
| GCATTGTGAAGCTTGTGCAC+AGG | - | chr3.1:78915733-78915752 | MS.gene06233:intron | 50.0% | |
| GGAACAAGAAACCAAGCCAG+AGG | - | chr3.1:78915222-78915241 | MS.gene06233:CDS | 50.0% | |
| GGAGAAGAAGGAAGAAGGGA+AGG | - | chr3.1:78916848-78916867 | MS.gene06233:CDS | 50.0% | |
| TCACTGAACATTTGTGGCGG+CGG | + | chr3.1:78917083-78917102 | None:intergenic | 50.0% | |
| TGAGGCCAAGCCACAAGAAA+AGG | - | chr3.1:78916899-78916918 | MS.gene06233:CDS | 50.0% | |
| TGCATTGTGAAGGCTGTGCT+CGG | - | chr3.1:78915320-78915339 | MS.gene06233:CDS | 50.0% | |
| !! | GAGCTTTGAGGTAAGCGTGA+AGG | - | chr3.1:78916707-78916726 | MS.gene06233:CDS | 50.0% |
| !! | TTTCCTCCTCAGGAGCGTTT+GGG | + | chr3.1:78915507-78915526 | None:intergenic | 50.0% |
| !!! | CTCTGGTTTTTCCTCTGGCT+TGG | + | chr3.1:78915236-78915255 | None:intergenic | 50.0% |
| !!! | TTTTCCTCCTCAGGAGCGTT+TGG | + | chr3.1:78915508-78915527 | None:intergenic | 50.0% |
| AAAATCTCTGCTGGAGGCGG+CGG | + | chr3.1:78915286-78915305 | None:intergenic | 55.0% | |
| ATTGGCAGGAGTGGAATGGG+TGG | - | chr3.1:78916671-78916690 | MS.gene06233:CDS | 55.0% | |
| GCGGAATATCATGTCGGTGC+TGG | - | chr3.1:78916188-78916207 | MS.gene06233:intron | 55.0% | |
| GCTGTGCTCGGAAAGTTCGT+CGG | - | chr3.1:78915332-78915351 | MS.gene06233:CDS | 55.0% | |
| TGAGGAGGAAGCCAAAGCTG+TGG | - | chr3.1:78916812-78916831 | MS.gene06233:CDS | 55.0% | |
| !! | TCCTCAGGAGCGTTTGGGAT+CGG | + | chr3.1:78915502-78915521 | None:intergenic | 55.0% |
| AACATTTGTGGCGGCGGTGG+CGG | + | chr3.1:78917077-78917096 | None:intergenic | 60.0% | |
| CTGAACATTTGTGGCGGCGG+TGG | + | chr3.1:78917080-78917099 | None:intergenic | 60.0% | |
| GATCCCAAACGCTCCTGAGG+AGG | - | chr3.1:78915501-78915520 | MS.gene06233:intron | 60.0% | |
| TCCGATCCCAAACGCTCCTG+AGG | - | chr3.1:78915498-78915517 | MS.gene06233:intron | 60.0% | |
| GCTGGTTACCCCGTCATGCG+CGG | - | chr3.1:78916206-78916225 | MS.gene06233:intron | 65.0% | |
| ATCTCTGCTGGAGGCGGCGG+AGG | + | chr3.1:78915283-78915302 | None:intergenic | 70.0% | |
| ! | ATTTGTGGCGGCGGTGGCGG+TGG | + | chr3.1:78917074-78917093 | None:intergenic | 70.0% |
| !! | GGTGGCGGTGGTGGAGGGTA+TGG | + | chr3.1:78917062-78917081 | None:intergenic | 70.0% |
| !! | TGTGGCGGCGGTGGCGGTGG+TGG | + | chr3.1:78917071-78917090 | None:intergenic | 80.0% |
| !!! | GCGGCGGTGGCGGTGGTGGA+GGG | + | chr3.1:78917067-78917086 | None:intergenic | 80.0% |
| !! | GGCGGCGGTGGCGGTGGTGG+AGG | + | chr3.1:78917068-78917087 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 78915056 | 78917133 | 78915056 | ID=MS.gene06233 |
| chr3.1 | mRNA | 78915056 | 78917133 | 78915056 | ID=MS.gene06233.t1;Parent=MS.gene06233 |
| chr3.1 | exon | 78917125 | 78917133 | 78917125 | ID=MS.gene06233.t1.exon1;Parent=MS.gene06233.t1 |
| chr3.1 | CDS | 78917125 | 78917133 | 78917125 | ID=cds.MS.gene06233.t1;Parent=MS.gene06233.t1 |
| chr3.1 | exon | 78916613 | 78917011 | 78916613 | ID=MS.gene06233.t1.exon2;Parent=MS.gene06233.t1 |
| chr3.1 | CDS | 78916613 | 78917011 | 78916613 | ID=cds.MS.gene06233.t1;Parent=MS.gene06233.t1 |
| chr3.1 | exon | 78916404 | 78916488 | 78916404 | ID=MS.gene06233.t1.exon3;Parent=MS.gene06233.t1 |
| chr3.1 | CDS | 78916404 | 78916488 | 78916404 | ID=cds.MS.gene06233.t1;Parent=MS.gene06233.t1 |
| chr3.1 | exon | 78915056 | 78915510 | 78915056 | ID=MS.gene06233.t1.exon4;Parent=MS.gene06233.t1 |
| chr3.1 | CDS | 78915056 | 78915510 | 78915056 | ID=cds.MS.gene06233.t1;Parent=MS.gene06233.t1 |
| Gene Sequence |
| Protein sequence |
