Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055509.t1 | PNY16350.1 | 77.9 | 272 | 58 | 2 | 45 | 315 | 45 | 315 | 3.80E-66 | 261.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055509.t1 | Q9C5D3 | 69.8 | 162 | 47 | 1 | 46 | 205 | 76 | 237 | 1.2e-44 | 181.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055509.t1 | A0A2K3PM38 | 77.9 | 272 | 58 | 2 | 45 | 315 | 45 | 315 | 2.7e-66 | 261.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene055509 | 0.814898 | 1.22E-51 | -1.69E-46 |
| MS.gene055133 | MS.gene055509 | 0.810945 | 8.96E-51 | -1.69E-46 |
| MS.gene055509 | MS.gene057754 | 0.811295 | 7.52E-51 | -1.69E-46 |
| MS.gene055509 | MS.gene06233 | 0.945191 | 4.84E-104 | -1.69E-46 |
| MS.gene055509 | MS.gene062932 | 0.803881 | 2.82E-49 | -1.69E-46 |
| MS.gene055509 | MS.gene064863 | 0.810733 | 9.95E-51 | -1.69E-46 |
| MS.gene055509 | MS.gene065378 | 0.803028 | 4.24E-49 | -1.69E-46 |
| MS.gene055509 | MS.gene08514 | 0.817854 | 2.66E-52 | -1.69E-46 |
| MS.gene055509 | MS.gene23359 | 0.805568 | 1.25E-49 | -1.69E-46 |
| MS.gene055509 | MS.gene23378 | 0.801104 | 1.05E-48 | -1.69E-46 |
| MS.gene055509 | MS.gene26990 | 0.804036 | 2.62E-49 | -1.69E-46 |
| MS.gene055509 | MS.gene55219 | -0.813028 | 3.15E-51 | -1.69E-46 |
| MS.gene055509 | MS.gene66884 | 0.800351 | 1.50E-48 | -1.69E-46 |
| MS.gene055509 | MS.gene88229 | 0.803978 | 2.69E-49 | -1.69E-46 |
| MS.gene055509 | MS.gene88772 | 0.805523 | 1.28E-49 | -1.69E-46 |
| MS.gene055509 | MS.gene89238 | 0.805373 | 1.38E-49 | -1.69E-46 |
| MS.gene055509 | MS.gene97819 | 0.800236 | 1.58E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055509.t1 | MTR_3g099030 | 74.296 | 284 | 33 | 3 | 32 | 315 | 23 | 266 | 4.73e-111 | 323 |
| MS.gene055509.t1 | MTR_3g099040 | 80.986 | 284 | 48 | 3 | 33 | 315 | 24 | 302 | 2.95e-102 | 302 |
| MS.gene055509.t1 | MTR_8g096700 | 53.925 | 293 | 95 | 8 | 42 | 315 | 50 | 321 | 7.52e-80 | 246 |
| MS.gene055509.t1 | MTR_4g006650 | 85.714 | 133 | 18 | 1 | 33 | 164 | 157 | 289 | 1.65e-54 | 181 |
| MS.gene055509.t1 | MTR_2g026685 | 47.101 | 276 | 106 | 4 | 42 | 315 | 32 | 269 | 1.83e-45 | 155 |
| MS.gene055509.t1 | MTR_2g026685 | 47.101 | 276 | 106 | 4 | 42 | 315 | 33 | 270 | 1.88e-45 | 155 |
| MS.gene055509.t1 | MTR_2g026685 | 46.816 | 267 | 102 | 4 | 51 | 315 | 1 | 229 | 1.91e-43 | 149 |
| MS.gene055509.t1 | MTR_3g093020 | 36.039 | 308 | 167 | 7 | 10 | 314 | 3 | 283 | 1.65e-38 | 137 |
| MS.gene055509.t1 | MTR_3g435930 | 32.353 | 272 | 121 | 6 | 45 | 315 | 28 | 237 | 1.98e-33 | 123 |
| MS.gene055509.t1 | MTR_5g069180 | 36.646 | 161 | 90 | 3 | 46 | 204 | 56 | 206 | 5.75e-27 | 108 |
| MS.gene055509.t1 | MTR_4g057765 | 31.071 | 280 | 159 | 8 | 46 | 315 | 69 | 324 | 1.07e-26 | 107 |
| MS.gene055509.t1 | MTR_2g095480 | 34.146 | 164 | 105 | 2 | 42 | 204 | 64 | 225 | 2.51e-24 | 101 |
| MS.gene055509.t1 | MTR_1g063210 | 30.028 | 363 | 176 | 9 | 1 | 315 | 1 | 333 | 3.21e-24 | 100 |
| MS.gene055509.t1 | MTR_8g010540 | 31.111 | 270 | 138 | 9 | 51 | 314 | 37 | 264 | 1.27e-19 | 87.0 |
| MS.gene055509.t1 | MTR_0041s0140 | 33.692 | 279 | 116 | 11 | 45 | 295 | 15 | 252 | 1.37e-17 | 81.3 |
| MS.gene055509.t1 | MTR_7g101930 | 33.692 | 279 | 116 | 11 | 45 | 295 | 15 | 252 | 1.08e-16 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055509.t1 | AT5G50740 | 46.290 | 283 | 112 | 5 | 45 | 315 | 29 | 283 | 1.13e-71 | 223 |
| MS.gene055509.t1 | AT5G50740 | 46.290 | 283 | 112 | 5 | 45 | 315 | 29 | 283 | 1.13e-71 | 223 |
| MS.gene055509.t1 | AT5G50740 | 46.290 | 283 | 112 | 5 | 45 | 315 | 36 | 290 | 1.68e-71 | 223 |
| MS.gene055509.t1 | AT5G63530 | 65.244 | 164 | 55 | 2 | 44 | 205 | 59 | 222 | 2.09e-60 | 196 |
| MS.gene055509.t1 | AT5G63530 | 65.244 | 164 | 55 | 2 | 44 | 205 | 74 | 237 | 2.96e-60 | 196 |
| MS.gene055509.t1 | AT5G50740 | 59.016 | 122 | 49 | 1 | 45 | 165 | 29 | 150 | 4.63e-43 | 146 |
| MS.gene055509.t1 | AT5G50740 | 59.016 | 122 | 49 | 1 | 45 | 165 | 36 | 157 | 1.00e-42 | 145 |
| MS.gene055509.t1 | AT3G02960 | 33.333 | 303 | 131 | 7 | 19 | 315 | 9 | 246 | 2.88e-41 | 144 |
| MS.gene055509.t1 | AT5G24580 | 34.926 | 272 | 164 | 5 | 45 | 314 | 58 | 318 | 1.20e-32 | 123 |
| MS.gene055509.t1 | AT5G24580 | 34.926 | 272 | 164 | 5 | 45 | 314 | 58 | 318 | 1.20e-32 | 123 |
| MS.gene055509.t1 | AT5G24580 | 31.058 | 293 | 147 | 7 | 45 | 314 | 57 | 317 | 1.30e-32 | 123 |
| MS.gene055509.t1 | AT5G24580 | 30.034 | 293 | 147 | 8 | 45 | 314 | 58 | 315 | 5.33e-29 | 113 |
| MS.gene055509.t1 | AT2G36950 | 33.824 | 340 | 151 | 12 | 45 | 315 | 52 | 386 | 2.85e-26 | 107 |
| MS.gene055509.t1 | AT5G03380 | 27.000 | 400 | 183 | 10 | 15 | 315 | 3 | 392 | 2.21e-23 | 99.4 |
| MS.gene055509.t1 | AT5G03380 | 26.230 | 366 | 172 | 8 | 47 | 315 | 1 | 365 | 6.47e-22 | 95.1 |
| MS.gene055509.t1 | AT5G24580 | 29.389 | 262 | 130 | 7 | 76 | 314 | 2 | 231 | 9.41e-22 | 92.0 |
| MS.gene055509.t1 | AT1G29000 | 33.962 | 159 | 101 | 2 | 49 | 204 | 21 | 178 | 2.70e-20 | 89.4 |
| MS.gene055509.t1 | AT1G29000 | 33.962 | 159 | 101 | 2 | 49 | 204 | 21 | 178 | 2.70e-20 | 89.4 |
| MS.gene055509.t1 | AT5G60800 | 28.977 | 176 | 112 | 2 | 41 | 204 | 24 | 198 | 1.92e-14 | 72.8 |
| MS.gene055509.t1 | AT5G60800 | 28.977 | 176 | 112 | 2 | 41 | 204 | 24 | 198 | 3.57e-14 | 72.4 |
Find 81 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAACAGAGGAACCGAAAA+AGG | 0.239412 | 3.2:-82425767 | MS.gene055509:CDS |
| AGCAGAGCCATTGAAGGTTT+TGG | 0.240236 | 3.2:-82425536 | MS.gene055509:CDS |
| CACATGACACTGCAAGCATT+TGG | 0.293855 | 3.2:+82424134 | None:intergenic |
| TGTTCTTTCTTCTTCTCTTC+AGG | 0.306339 | 3.2:+82425415 | None:intergenic |
| GGCGGCGGTGGCGGTGGTGG+AGG | 0.314210 | 3.2:+82424179 | None:intergenic |
| TTTCTTCTCTTCCACAGCTT+TGG | 0.317843 | 3.2:+82424421 | None:intergenic |
| GAATATGTGTACAAGCGAAT+TGG | 0.353264 | 3.2:-82424488 | MS.gene055509:CDS |
| AAGAGGAGAAGAAGGAAGAA+GGG | 0.373502 | 3.2:-82424400 | MS.gene055509:CDS |
| ATCTCTGCTGGAGGCGGCGG+AGG | 0.378153 | 3.2:+82425688 | None:intergenic |
| ATTTGTGGCGGCGGTGGCGG+TGG | 0.378901 | 3.2:+82424173 | None:intergenic |
| GAGTTCAGAAGAAGAGTCAT+AGG | 0.384792 | 3.2:-82425510 | MS.gene055509:CDS |
| TGTGGCGGCGGTGGCGGTGG+TGG | 0.385547 | 3.2:+82424176 | None:intergenic |
| TTTCCTCCTCAGGAGCGTTT+GGG | 0.390412 | 3.2:+82425464 | None:intergenic |
| GTTTCATCTTTAGTTTCCTC+TGG | 0.411965 | 3.2:+82425718 | None:intergenic |
| AAAGAGGAGAAGAAGGAAGA+AGG | 0.412505 | 3.2:-82424401 | MS.gene055509:CDS |
| AACATTTGTGGCGGCGGTGG+CGG | 0.415540 | 3.2:+82424170 | None:intergenic |
| ACATGACACTGCAAGCATTT+GGG | 0.419372 | 3.2:+82424135 | None:intergenic |
| AGAAGATACGAAGGTGGAGG+AGG | 0.427083 | 3.2:-82424303 | MS.gene055509:CDS |
| AGAGAAGAAAGAGGAGAAGA+AGG | 0.435926 | 3.2:-82424408 | MS.gene055509:CDS |
| CTGAACATTTGTGGCGGCGG+TGG | 0.436609 | 3.2:+82424167 | None:intergenic |
| ACATATTCAACCAACATTGC+TGG | 0.437843 | 3.2:+82424503 | None:intergenic |
| AATATGTGTACAAGCGAATT+GGG | 0.445516 | 3.2:-82424487 | MS.gene055509:CDS |
| TGAGGCCAAGCCACAAGAAA+AGG | 0.446729 | 3.2:-82424345 | MS.gene055509:CDS |
| GAAAACAAGGAGAAGAAAGA+AGG | 0.449075 | 3.2:-82424374 | MS.gene055509:CDS |
| GAAGAAAGAAGGAGAGGGTG+AGG | 0.455906 | 3.2:-82424363 | MS.gene055509:CDS |
| AAAATCTCTGCTGGAGGCGG+CGG | 0.459777 | 3.2:+82425685 | None:intergenic |
| GGAGAAGAAGGAAGAAGGGA+AGG | 0.461035 | 3.2:-82424396 | MS.gene055509:CDS |
| TTCTCATCACTGAACATTTG+TGG | 0.463049 | 3.2:+82424158 | None:intergenic |
| GCGGCGGTGGCGGTGGTGGA+GGG | 0.465585 | 3.2:+82424180 | None:intergenic |
| GGTGGCGGTGGTGGAGGGTA+TGG | 0.467164 | 3.2:+82424185 | None:intergenic |
| AACAGATTGCAAATCTCATA+TGG | 0.468470 | 3.2:-82425578 | MS.gene055509:CDS |
| TCCTCAGGAGCGTTTGGGAT+CGG | 0.469426 | 3.2:+82425469 | None:intergenic |
| GGAAGAAGGGAAGGAAAACA+AGG | 0.471254 | 3.2:-82424387 | MS.gene055509:CDS |
| ACGTTCAGCAAAATCTCTGC+TGG | 0.473784 | 3.2:+82425676 | None:intergenic |
| TTGATTGGCAGGAGTGGAAT+GGG | 0.474045 | 3.2:-82424576 | MS.gene055509:intron |
| ACTCTCTCCAAAACCTTCAA+TGG | 0.491679 | 3.2:+82425529 | None:intergenic |
| AGAGAAAGCAGAGCCATTGA+AGG | 0.492377 | 3.2:-82425542 | MS.gene055509:CDS |
| TATGCATGATATGCTATTGT+TGG | 0.501666 | 3.2:+82424227 | None:intergenic |
| TGAAGAGAAGAAGAAAGAAC+AGG | 0.508892 | 3.2:-82425413 | MS.gene055509:intron |
| ATGGTTGATAGTAAGCAGTT+GGG | 0.511887 | 3.2:+82424204 | None:intergenic |
| CAAGGAGAAGAAAGAAGGAG+AGG | 0.516607 | 3.2:-82424369 | MS.gene055509:CDS |
| TATGGTTGATAGTAAGCAGT+TGG | 0.518818 | 3.2:+82424203 | None:intergenic |
| AAGGAGAAGAAAGAAGGAGA+GGG | 0.528289 | 3.2:-82424368 | MS.gene055509:CDS |
| GGGTATGCATACATATTCAT+TGG | 0.529467 | 3.2:+82424248 | None:intergenic |
| AGCTTTGAGGTAAGCGTGAA+GGG | 0.533924 | 3.2:-82424536 | MS.gene055509:CDS |
| AGCAAAATCTCTGCTGGAGG+CGG | 0.541141 | 3.2:+82425682 | None:intergenic |
| TCTCATATGGTGGTTGTGAA+AGG | 0.544258 | 3.2:-82425565 | MS.gene055509:CDS |
| AGCTAATCTGAAGAGCTTTG+AGG | 0.546612 | 3.2:-82424549 | MS.gene055509:CDS |
| ATCATTTAAGACCTCTCCCA+TGG | 0.548646 | 3.2:+82425914 | None:intergenic |
| ATGCATGATATGCTATTGTT+GGG | 0.553729 | 3.2:+82424228 | None:intergenic |
| ATTGATTGGCAGGAGTGGAA+TGG | 0.554760 | 3.2:-82424577 | MS.gene055509:intron |
| TATGCATACATATTCATTGG+TGG | 0.555500 | 3.2:+82424251 | None:intergenic |
| TTAAGAACAGTAACAATCTG+AGG | 0.568299 | 3.2:+82425267 | None:intergenic |
| TCACTGAACATTTGTGGCGG+CGG | 0.568767 | 3.2:+82424164 | None:intergenic |
| GAGCTTTGAGGTAAGCGTGA+AGG | 0.571500 | 3.2:-82424537 | MS.gene055509:CDS |
| AAAAGGATACTGAAAATGAA+GGG | 0.576732 | 3.2:-82425204 | MS.gene055509:intron |
| TATAGAAGATACGAAGGTGG+AGG | 0.580399 | 3.2:-82424306 | MS.gene055509:CDS |
| AGTGTATGATCCAGCAATGT+TGG | 0.580598 | 3.2:-82424513 | MS.gene055509:CDS |
| GAAGGAAGAGAAAGTTGAGG+AGG | 0.581031 | 3.2:-82424447 | MS.gene055509:CDS |
| GATCCCAAACGCTCCTGAGG+AGG | 0.583434 | 3.2:-82425467 | MS.gene055509:CDS |
| TCCGATCCCAAACGCTCCTG+AGG | 0.585864 | 3.2:-82425470 | MS.gene055509:CDS |
| TGCATTGTGAAGGCTGTGCT+CGG | 0.590749 | 3.2:-82425648 | MS.gene055509:CDS |
| GTTATCACATCTTCAACACC+TGG | 0.604591 | 3.2:+82425598 | None:intergenic |
| TGTGAAGGAAGAGAAAGTTG+AGG | 0.607187 | 3.2:-82424450 | MS.gene055509:CDS |
| AGCTGTGGAAGAGAAGAAAG+AGG | 0.610466 | 3.2:-82424417 | MS.gene055509:CDS |
| ATTGGCAGGAGTGGAATGGG+TGG | 0.615630 | 3.2:-82424573 | MS.gene055509:intron |
| TCAGAAGAAGAGTCATAGGA+AGG | 0.616480 | 3.2:-82425506 | MS.gene055509:CDS |
| GGAACAAGAAACCAAGCCAG+AGG | 0.617538 | 3.2:-82425746 | MS.gene055509:CDS |
| TGAGGAGGAAGCCAAAGCTG+TGG | 0.619023 | 3.2:-82424432 | MS.gene055509:CDS |
| GAAACTTGAAACCATGGGAG+AGG | 0.620100 | 3.2:-82425925 | None:intergenic |
| AACAGAGGAAACCAAAACAG+AGG | 0.620182 | 3.2:-82425779 | MS.gene055509:CDS |
| TTCAGCAAAATCTCTGCTGG+AGG | 0.623839 | 3.2:+82425679 | None:intergenic |
| GCTGTGCTCGGAAAGTTCGT+CGG | 0.640052 | 3.2:-82425636 | MS.gene055509:CDS |
| AACGTGTTCATGCATTGTGA+AGG | 0.641239 | 3.2:-82425658 | MS.gene055509:CDS |
| TCATCACTGAACATTTGTGG+CGG | 0.641634 | 3.2:+82424161 | None:intergenic |
| GCATTGTGAAGCTTGTGCAC+AGG | 0.645456 | 3.2:-82425235 | MS.gene055509:CDS |
| AACTATTATAGAAGATACGA+AGG | 0.664418 | 3.2:-82424312 | MS.gene055509:CDS |
| AGATTGCAAATCTCATATGG+TGG | 0.675547 | 3.2:-82425575 | MS.gene055509:CDS |
| TATTATAGAAGATACGAAGG+TGG | 0.691283 | 3.2:-82424309 | MS.gene055509:CDS |
| TTAGGAAGAACAGAAAACAG+AGG | 0.710100 | 3.2:-82425794 | MS.gene055509:intron |
| GAAGCATGCAGTGATTGTGA+AGG | 0.719800 | 3.2:-82424465 | MS.gene055509:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAGAGTTAAATAT+TGG | + | chr3.2:82424873-82424892 | None:intergenic | 10.0% |
| !!! | TTTTTGTTTACAAAATTATA+TGG | - | chr3.2:82424910-82424929 | MS.gene055509:intron | 10.0% |
| !!! | ATTGTATTTTCATTTTTTGT+TGG | - | chr3.2:82424185-82424204 | MS.gene055509:CDS | 15.0% |
| !! | AGTTGATTGATATAATTGAT+TGG | - | chr3.2:82425454-82425473 | MS.gene055509:CDS | 20.0% |
| !! | CTAAGTATAGTAAAAAAAGT+TGG | + | chr3.2:82425265-82425284 | None:intergenic | 20.0% |
| !!! | ACTAATGTTTTACTAAAAAC+TGG | + | chr3.2:82425356-82425375 | None:intergenic | 20.0% |
| !!! | TGGTTGTTTTTATTTTGTTT+AGG | - | chr3.2:82424233-82424252 | MS.gene055509:CDS | 20.0% |
| ! | AAAAAGGATACTGAAAATGA+AGG | - | chr3.2:82424840-82424859 | MS.gene055509:intron | 25.0% |
| ! | AAAAGGATACTGAAAATGAA+GGG | - | chr3.2:82424841-82424860 | MS.gene055509:intron | 25.0% |
| ! | AACTATTATAGAAGATACGA+AGG | - | chr3.2:82425733-82425752 | MS.gene055509:CDS | 25.0% |
| ! | TACAATGATTTGAGAAACAA+AGG | + | chr3.2:82424171-82424190 | None:intergenic | 25.0% |
| ! | TATAGTAAAAAAAGTTGGCA+TGG | + | chr3.2:82425260-82425279 | None:intergenic | 25.0% |
| !! | AAAAGAAAAGCATAATTCCA+CGG | + | chr3.2:82424733-82424752 | None:intergenic | 25.0% |
| !!! | ATTCTCAGCATCTTTTATTT+TGG | - | chr3.2:82424213-82424232 | MS.gene055509:CDS | 25.0% |
| AAAAACTGTTGAGGAAGATA+AGG | - | chr3.2:82424602-82424621 | MS.gene055509:intron | 30.0% | |
| AAAAATGACATGATATTCCG+CGG | + | chr3.2:82425121-82425140 | None:intergenic | 30.0% | |
| AACAGATTGCAAATCTCATA+TGG | - | chr3.2:82424467-82424486 | MS.gene055509:CDS | 30.0% | |
| AATATGTGTACAAGCGAATT+GGG | - | chr3.2:82425558-82425577 | MS.gene055509:CDS | 30.0% | |
| AATCAATTAAATCATTCGCG+TGG | - | chr3.2:82425230-82425249 | MS.gene055509:CDS | 30.0% | |
| ATGCATGATATGCTATTGTT+GGG | + | chr3.2:82425820-82425839 | None:intergenic | 30.0% | |
| GATTGATATAATTGATTGGC+AGG | - | chr3.2:82425458-82425477 | MS.gene055509:CDS | 30.0% | |
| TACGCACGTAATGATTTAAT+TGG | + | chr3.2:82425324-82425343 | None:intergenic | 30.0% | |
| TATGCATACATATTCATTGG+TGG | + | chr3.2:82425797-82425816 | None:intergenic | 30.0% | |
| TATGCATGATATGCTATTGT+TGG | + | chr3.2:82425821-82425840 | None:intergenic | 30.0% | |
| TATTATAGAAGATACGAAGG+TGG | - | chr3.2:82425736-82425755 | MS.gene055509:CDS | 30.0% | |
| TTAAGAACAGTAACAATCTG+AGG | + | chr3.2:82424781-82424800 | None:intergenic | 30.0% | |
| ! | ACATTAGTTTGAATCCAAAG+TGG | - | chr3.2:82425368-82425387 | MS.gene055509:intron | 30.0% |
| ! | TTGGTTTCTTGTTCCTTTTT+CGG | + | chr3.2:82424294-82424313 | None:intergenic | 30.0% |
| AAAATGACATGATATTCCGC+GGG | + | chr3.2:82425120-82425139 | None:intergenic | 35.0% | |
| ACATATTCAACCAACATTGC+TGG | + | chr3.2:82425545-82425564 | None:intergenic | 35.0% | |
| AGATTGCAAATCTCATATGG+TGG | - | chr3.2:82424470-82424489 | MS.gene055509:CDS | 35.0% | |
| ATATAATTGATTGGCAGGAG+TGG | - | chr3.2:82425463-82425482 | MS.gene055509:CDS | 35.0% | |
| GAAAACAAGGAGAAGAAAGA+AGG | - | chr3.2:82425671-82425690 | MS.gene055509:CDS | 35.0% | |
| GAATATGTGTACAAGCGAAT+TGG | - | chr3.2:82425557-82425576 | MS.gene055509:CDS | 35.0% | |
| GGGTATGCATACATATTCAT+TGG | + | chr3.2:82425800-82425819 | None:intergenic | 35.0% | |
| TGAAGAGAAGAAGAAAGAAC+AGG | - | chr3.2:82424632-82424651 | MS.gene055509:intron | 35.0% | |
| TGTTCTTTCTTCTTCTCTTC+AGG | + | chr3.2:82424633-82424652 | None:intergenic | 35.0% | |
| TTAGGAAGAACAGAAAACAG+AGG | - | chr3.2:82424251-82424270 | MS.gene055509:CDS | 35.0% | |
| TTCTCATCACTGAACATTTG+TGG | + | chr3.2:82425890-82425909 | None:intergenic | 35.0% | |
| ! | GATTTGATCCTTTTAATCCG+TGG | - | chr3.2:82424713-82424732 | MS.gene055509:intron | 35.0% |
| ! | GCATAATTCCACGGATTAAA+AGG | + | chr3.2:82424724-82424743 | None:intergenic | 35.0% |
| ! | GTTTCATCTTTAGTTTCCTC+TGG | + | chr3.2:82424330-82424349 | None:intergenic | 35.0% |
| ! | TTGATCTAACATTGCCACTT+TGG | + | chr3.2:82425385-82425404 | None:intergenic | 35.0% |
| !! | ATGGTTGATAGTAAGCAGTT+GGG | + | chr3.2:82425844-82425863 | None:intergenic | 35.0% |
| !! | TATGGTTGATAGTAAGCAGT+TGG | + | chr3.2:82425845-82425864 | None:intergenic | 35.0% |
| AAAGAGGAGAAGAAGGAAGA+AGG | - | chr3.2:82425644-82425663 | MS.gene055509:CDS | 40.0% | |
| AACAGAGGAAACCAAAACAG+AGG | - | chr3.2:82424266-82424285 | MS.gene055509:CDS | 40.0% | |
| AACGTGTTCATGCATTGTGA+AGG | - | chr3.2:82424387-82424406 | MS.gene055509:CDS | 40.0% | |
| AAGAGGAGAAGAAGGAAGAA+GGG | - | chr3.2:82425645-82425664 | MS.gene055509:CDS | 40.0% | |
| AAGGAGAAGAAAGAAGGAGA+GGG | - | chr3.2:82425677-82425696 | MS.gene055509:CDS | 40.0% | |
| ACATGACACTGCAAGCATTT+GGG | + | chr3.2:82425913-82425932 | None:intergenic | 40.0% | |
| ACCAATTACATTATTGCCCG+CGG | - | chr3.2:82425101-82425120 | MS.gene055509:intron | 40.0% | |
| ACTCTCTCCAAAACCTTCAA+TGG | + | chr3.2:82424519-82424538 | None:intergenic | 40.0% | |
| AGAGAAGAAAGAGGAGAAGA+AGG | - | chr3.2:82425637-82425656 | MS.gene055509:CDS | 40.0% | |
| AGCTAATCTGAAGAGCTTTG+AGG | - | chr3.2:82425496-82425515 | MS.gene055509:CDS | 40.0% | |
| AGTGTATGATCCAGCAATGT+TGG | - | chr3.2:82425532-82425551 | MS.gene055509:CDS | 40.0% | |
| CAAAACAGAGGAACCGAAAA+AGG | - | chr3.2:82424278-82424297 | MS.gene055509:CDS | 40.0% | |
| GAGTTCAGAAGAAGAGTCAT+AGG | - | chr3.2:82424535-82424554 | MS.gene055509:CDS | 40.0% | |
| GTGCACAGGAGATCAAAAAA+AGG | - | chr3.2:82424824-82424843 | MS.gene055509:intron | 40.0% | |
| GTTATCACATCTTCAACACC+TGG | + | chr3.2:82424450-82424469 | None:intergenic | 40.0% | |
| TATAGAAGATACGAAGGTGG+AGG | - | chr3.2:82425739-82425758 | MS.gene055509:CDS | 40.0% | |
| TCAGAAGAAGAGTCATAGGA+AGG | - | chr3.2:82424539-82424558 | MS.gene055509:CDS | 40.0% | |
| TCATCACTGAACATTTGTGG+CGG | + | chr3.2:82425887-82425906 | None:intergenic | 40.0% | |
| TCTCATATGGTGGTTGTGAA+AGG | - | chr3.2:82424480-82424499 | MS.gene055509:CDS | 40.0% | |
| TGAGGAGGAAAAAACTGTTG+AGG | - | chr3.2:82424593-82424612 | MS.gene055509:intron | 40.0% | |
| TGTGAAGGAAGAGAAAGTTG+AGG | - | chr3.2:82425595-82425614 | MS.gene055509:CDS | 40.0% | |
| TTTCTTCTCTTCCACAGCTT+TGG | + | chr3.2:82425627-82425646 | None:intergenic | 40.0% | |
| ! | AACAATCTGAGGCTGCAAAT+GGG | + | chr3.2:82424770-82424789 | None:intergenic | 40.0% |
| ! | GTCTCTTTCTCCTTTTCTTG+TGG | + | chr3.2:82425713-82425732 | None:intergenic | 40.0% |
| ! | TAACAATCTGAGGCTGCAAA+TGG | + | chr3.2:82424771-82424790 | None:intergenic | 40.0% |
| ! | TTTCTCCTTTTCTTGTGGCT+TGG | + | chr3.2:82425708-82425727 | None:intergenic | 40.0% |
| !!! | CTTTTTCGGTTCCTCTGTTT+TGG | + | chr3.2:82424280-82424299 | None:intergenic | 40.0% |
| !!! | TCAACAGTTTTTTCCTCCTC+AGG | + | chr3.2:82424594-82424613 | None:intergenic | 40.0% |
| ACATGATATTCCGCGCATGA+CGG | + | chr3.2:82425021-82425040 | None:intergenic | 45.0% | |
| ACGTTCAGCAAAATCTCTGC+TGG | + | chr3.2:82424372-82424391 | None:intergenic | 45.0% | |
| AGAGAAAGCAGAGCCATTGA+AGG | - | chr3.2:82424503-82424522 | MS.gene055509:CDS | 45.0% | |
| AGCTGTGGAAGAGAAGAAAG+AGG | - | chr3.2:82425628-82425647 | MS.gene055509:CDS | 45.0% | |
| ATTGATTGGCAGGAGTGGAA+TGG | - | chr3.2:82425468-82425487 | MS.gene055509:CDS | 45.0% | |
| CAAGGAGAAGAAAGAAGGAG+AGG | - | chr3.2:82425676-82425695 | MS.gene055509:CDS | 45.0% | |
| CACATGACACTGCAAGCATT+TGG | + | chr3.2:82425914-82425933 | None:intergenic | 45.0% | |
| GAAGCATGCAGTGATTGTGA+AGG | - | chr3.2:82425580-82425599 | MS.gene055509:CDS | 45.0% | |
| GAAGGAAGAGAAAGTTGAGG+AGG | - | chr3.2:82425598-82425617 | MS.gene055509:CDS | 45.0% | |
| GGAAGAAGGGAAGGAAAACA+AGG | - | chr3.2:82425658-82425677 | MS.gene055509:CDS | 45.0% | |
| TACAGCGCGGAATATCATGT+CGG | - | chr3.2:82424984-82425003 | MS.gene055509:intron | 45.0% | |
| TATTCCGCGCTGTATTAGTC+TGG | + | chr3.2:82424978-82424997 | None:intergenic | 45.0% | |
| TCATGCGCGGAATATCATGT+TGG | - | chr3.2:82425021-82425040 | MS.gene055509:intron | 45.0% | |
| TCCGCGGGCAATAATGTAAT+TGG | + | chr3.2:82425105-82425124 | None:intergenic | 45.0% | |
| TTCAGCAAAATCTCTGCTGG+AGG | + | chr3.2:82424369-82424388 | None:intergenic | 45.0% | |
| TTGATTGGCAGGAGTGGAAT+GGG | - | chr3.2:82425469-82425488 | MS.gene055509:CDS | 45.0% | |
| ! | AGCAGAGCCATTGAAGGTTT+TGG | - | chr3.2:82424509-82424528 | MS.gene055509:CDS | 45.0% |
| ! | CGGTCGTTGAAAGATTTTCC+AGG | - | chr3.2:82424429-82424448 | MS.gene055509:CDS | 45.0% |
| !! | AGCTTTGAGGTAAGCGTGAA+GGG | - | chr3.2:82425509-82425528 | MS.gene055509:CDS | 45.0% |
| !!! | GTTTCCTCTGGTTTTTCCTC+TGG | + | chr3.2:82424318-82424337 | None:intergenic | 45.0% |
| AGAAGATACGAAGGTGGAGG+AGG | - | chr3.2:82425742-82425761 | MS.gene055509:CDS | 50.0% | |
| AGCAAAATCTCTGCTGGAGG+CGG | + | chr3.2:82424366-82424385 | None:intergenic | 50.0% | |
| ATGATATTCCGCGCATGACG+GGG | + | chr3.2:82425019-82425038 | None:intergenic | 50.0% | |
| CAAGCCAGAGGAAAAACCAG+AGG | - | chr3.2:82424311-82424330 | MS.gene055509:CDS | 50.0% | |
| CAGACCAGACTAATACAGCG+CGG | - | chr3.2:82424971-82424990 | MS.gene055509:intron | 50.0% | |
| CATGATATTCCGCGCATGAC+GGG | + | chr3.2:82425020-82425039 | None:intergenic | 50.0% | |
| GAAGAAAGAAGGAGAGGGTG+AGG | - | chr3.2:82425682-82425701 | MS.gene055509:CDS | 50.0% | |
| GCATTGTGAAGCTTGTGCAC+AGG | - | chr3.2:82424810-82424829 | MS.gene055509:intron | 50.0% | |
| GGAACAAGAAACCAAGCCAG+AGG | - | chr3.2:82424299-82424318 | MS.gene055509:CDS | 50.0% | |
| GGAGAAGAAGGAAGAAGGGA+AGG | - | chr3.2:82425649-82425668 | MS.gene055509:CDS | 50.0% | |
| TCACTGAACATTTGTGGCGG+CGG | + | chr3.2:82425884-82425903 | None:intergenic | 50.0% | |
| TGAGGCCAAGCCACAAGAAA+AGG | - | chr3.2:82425700-82425719 | MS.gene055509:CDS | 50.0% | |
| TGCATTGTGAAGGCTGTGCT+CGG | - | chr3.2:82424397-82424416 | MS.gene055509:CDS | 50.0% | |
| !! | GAGCTTTGAGGTAAGCGTGA+AGG | - | chr3.2:82425508-82425527 | MS.gene055509:CDS | 50.0% |
| !! | TTTCCTCCTCAGGAGCGTTT+GGG | + | chr3.2:82424584-82424603 | None:intergenic | 50.0% |
| !!! | CTCTGGTTTTTCCTCTGGCT+TGG | + | chr3.2:82424313-82424332 | None:intergenic | 50.0% |
| !!! | TTTTCCTCCTCAGGAGCGTT+TGG | + | chr3.2:82424585-82424604 | None:intergenic | 50.0% |
| AAAATCTCTGCTGGAGGCGG+CGG | + | chr3.2:82424363-82424382 | None:intergenic | 55.0% | |
| ATTGGCAGGAGTGGAATGGG+TGG | - | chr3.2:82425472-82425491 | MS.gene055509:CDS | 55.0% | |
| GCGGAATATCATGTCGGTGC+TGG | - | chr3.2:82424990-82425009 | MS.gene055509:intron | 55.0% | |
| GCTGTGCTCGGAAAGTTCGT+CGG | - | chr3.2:82424409-82424428 | MS.gene055509:CDS | 55.0% | |
| TGAGGAGGAAGCCAAAGCTG+TGG | - | chr3.2:82425613-82425632 | MS.gene055509:CDS | 55.0% | |
| !! | TCCTCAGGAGCGTTTGGGAT+CGG | + | chr3.2:82424579-82424598 | None:intergenic | 55.0% |
| AACATTTGTGGCGGCGGTGG+CGG | + | chr3.2:82425878-82425897 | None:intergenic | 60.0% | |
| CTGAACATTTGTGGCGGCGG+TGG | + | chr3.2:82425881-82425900 | None:intergenic | 60.0% | |
| GATCCCAAACGCTCCTGAGG+AGG | - | chr3.2:82424578-82424597 | MS.gene055509:intron | 60.0% | |
| TCCGATCCCAAACGCTCCTG+AGG | - | chr3.2:82424575-82424594 | MS.gene055509:intron | 60.0% | |
| GCTGGTTACCCCGTCATGCG+CGG | - | chr3.2:82425008-82425027 | MS.gene055509:intron | 65.0% | |
| ATCTCTGCTGGAGGCGGCGG+AGG | + | chr3.2:82424360-82424379 | None:intergenic | 70.0% | |
| ! | ATTTGTGGCGGCGGTGGCGG+TGG | + | chr3.2:82425875-82425894 | None:intergenic | 70.0% |
| !! | GGTGGCGGTGGTGGAGGGTA+TGG | + | chr3.2:82425863-82425882 | None:intergenic | 70.0% |
| !! | TGTGGCGGCGGTGGCGGTGG+TGG | + | chr3.2:82425872-82425891 | None:intergenic | 80.0% |
| !!! | GCGGCGGTGGCGGTGGTGGA+GGG | + | chr3.2:82425868-82425887 | None:intergenic | 80.0% |
| !! | GGCGGCGGTGGCGGTGGTGG+AGG | + | chr3.2:82425869-82425888 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 82424133 | 82425934 | 82424133 | ID=MS.gene055509 |
| chr3.2 | mRNA | 82424133 | 82425934 | 82424133 | ID=MS.gene055509.t1;Parent=MS.gene055509 |
| chr3.2 | exon | 82425926 | 82425934 | 82425926 | ID=MS.gene055509.t1.exon1;Parent=MS.gene055509.t1 |
| chr3.2 | CDS | 82425926 | 82425934 | 82425926 | ID=cds.MS.gene055509.t1;Parent=MS.gene055509.t1 |
| chr3.2 | exon | 82425414 | 82425812 | 82425414 | ID=MS.gene055509.t1.exon2;Parent=MS.gene055509.t1 |
| chr3.2 | CDS | 82425414 | 82425812 | 82425414 | ID=cds.MS.gene055509.t1;Parent=MS.gene055509.t1 |
| chr3.2 | exon | 82425205 | 82425289 | 82425205 | ID=MS.gene055509.t1.exon3;Parent=MS.gene055509.t1 |
| chr3.2 | CDS | 82425205 | 82425289 | 82425205 | ID=cds.MS.gene055509.t1;Parent=MS.gene055509.t1 |
| chr3.2 | exon | 82424133 | 82424587 | 82424133 | ID=MS.gene055509.t1.exon4;Parent=MS.gene055509.t1 |
| chr3.2 | CDS | 82424133 | 82424587 | 82424133 | ID=cds.MS.gene055509.t1;Parent=MS.gene055509.t1 |
| Gene Sequence |
| Protein sequence |
