Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062338.t1 | AET00425.1 | 86.9 | 390 | 51 | 0 | 34 | 423 | 86 | 475 | 3.90E-191 | 677.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062338.t1 | Q6P2Z6 | 42.4 | 311 | 170 | 4 | 34 | 339 | 84 | 390 | 1.5e-63 | 245.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062338.t1 | G7K3E7 | 86.9 | 390 | 51 | 0 | 34 | 423 | 86 | 475 | 2.8e-191 | 677.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050194 | MS.gene062338 | 0.801235 | 9.91E-49 | -1.69E-46 |
| MS.gene051885 | MS.gene062338 | 0.81008 | 1.38E-50 | -1.69E-46 |
| MS.gene056121 | MS.gene062338 | 0.831401 | 1.70E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062338.t1 | MTR_5g091890 | 88.249 | 417 | 48 | 1 | 8 | 423 | 59 | 475 | 0.0 | 752 |
| MS.gene062338.t1 | MTR_3g064880 | 60.000 | 335 | 130 | 2 | 34 | 366 | 86 | 418 | 2.23e-132 | 390 |
| MS.gene062338.t1 | MTR_4g107030 | 50.301 | 332 | 114 | 3 | 34 | 360 | 92 | 377 | 1.05e-98 | 301 |
| MS.gene062338.t1 | MTR_5g089690 | 38.944 | 303 | 149 | 7 | 106 | 381 | 5 | 298 | 3.13e-55 | 186 |
| MS.gene062338.t1 | MTR_5g008620 | 41.053 | 285 | 124 | 10 | 106 | 361 | 5 | 274 | 1.24e-51 | 176 |
| MS.gene062338.t1 | MTR_5g091160 | 37.624 | 303 | 152 | 7 | 106 | 381 | 5 | 297 | 3.65e-51 | 176 |
| MS.gene062338.t1 | MTR_5g006990 | 38.776 | 294 | 127 | 11 | 106 | 361 | 5 | 283 | 1.17e-50 | 174 |
| MS.gene062338.t1 | MTR_5g090460 | 41.961 | 255 | 118 | 9 | 113 | 354 | 23 | 260 | 2.24e-49 | 171 |
| MS.gene062338.t1 | MTR_5g091490 | 36.027 | 297 | 142 | 7 | 107 | 381 | 8 | 278 | 2.14e-43 | 154 |
| MS.gene062338.t1 | MTR_5g092540 | 41.148 | 209 | 103 | 3 | 192 | 381 | 8 | 215 | 2.30e-43 | 152 |
| MS.gene062338.t1 | MTR_5g011640 | 37.024 | 289 | 127 | 10 | 106 | 354 | 5 | 278 | 2.10e-42 | 152 |
| MS.gene062338.t1 | MTR_5g011470 | 36.455 | 299 | 134 | 11 | 106 | 363 | 5 | 288 | 2.30e-42 | 152 |
| MS.gene062338.t1 | MTR_5g090030 | 43.204 | 206 | 101 | 5 | 158 | 359 | 20 | 213 | 9.51e-42 | 149 |
| MS.gene062338.t1 | MTR_4g069000 | 36.207 | 116 | 53 | 2 | 265 | 359 | 49 | 164 | 2.60e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062338.t1 | AT2G03820 | 50.602 | 332 | 157 | 3 | 42 | 369 | 93 | 421 | 7.29e-111 | 335 |
Find 88 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAGTGAGTAAAGACTTAA+AGG | 0.190975 | 5.1:+73473159 | None:intergenic |
| GTTGCTCGTGTGAAAGATTT+TGG | 0.226593 | 5.1:-73473043 | MS.gene062338:CDS |
| GACGCTTCCCGCGTTTCTTC+TGG | 0.262645 | 5.1:+73472846 | None:intergenic |
| TCCTAAAGTTGCTTCGAGTT+TGG | 0.279185 | 5.1:-73473293 | MS.gene062338:CDS |
| TATGCGCACTATATTTGATT+TGG | 0.290390 | 5.1:-73473572 | MS.gene062338:CDS |
| CCTAAAGTTGCTTCGAGTTT+GGG | 0.302689 | 5.1:-73473292 | MS.gene062338:CDS |
| CCCAAACTCGAAGCAACTTT+AGG | 0.324461 | 5.1:+73473292 | None:intergenic |
| ACAACAGCACTCCATTGATT+AGG | 0.327716 | 5.1:+73473619 | None:intergenic |
| CATTCAGAGGTTACTGTTGA+TGG | 0.334111 | 5.1:-73473094 | MS.gene062338:CDS |
| GCTTCGAGTTTGGGAAATAT+TGG | 0.355075 | 5.1:-73473283 | MS.gene062338:CDS |
| ATATGAAATTCCAGAGAGTT+AGG | 0.359653 | 5.1:-73473810 | MS.gene062338:CDS |
| TGATCTATTGGAGGAGCAGC+TGG | 0.364240 | 5.1:-73472747 | MS.gene062338:CDS |
| GTTCAGAAAGAGGTTATGAT+TGG | 0.368513 | 5.1:-73473724 | MS.gene062338:CDS |
| CACTATATTTGATTTGGAAC+AGG | 0.370247 | 5.1:-73473566 | MS.gene062338:CDS |
| ACTCACTAGCAAAGAGTTAG+TGG | 0.372541 | 5.1:-73473146 | MS.gene062338:CDS |
| AAATTTGGTGACCATGCTTT+TGG | 0.374828 | 5.1:-73472971 | MS.gene062338:CDS |
| CAACAGCACTCCATTGATTA+GGG | 0.376117 | 5.1:+73473620 | None:intergenic |
| ATTTAATATCAAGACTCATC+TGG | 0.383930 | 5.1:-73473005 | MS.gene062338:CDS |
| GATTCCTTCTAGATCATTTG+AGG | 0.411291 | 5.1:+73472817 | None:intergenic |
| AAACAGCGTGCCGATGTAAT+CGG | 0.426263 | 5.1:+73473211 | None:intergenic |
| GTCCTATTGTGATTTGTACT+AGG | 0.431373 | 5.1:-73473261 | MS.gene062338:CDS |
| TCCTATTGTGATTTGTACTA+GGG | 0.431610 | 5.1:-73473260 | MS.gene062338:CDS |
| TGCTCCTCCAATAGATCATA+AGG | 0.436724 | 5.1:+73472752 | None:intergenic |
| AGAGCTACCTTATGATCTAT+TGG | 0.437768 | 5.1:-73472759 | MS.gene062338:CDS |
| TCTTAGTTGGTGATATGTAT+TGG | 0.440006 | 5.1:-73473189 | MS.gene062338:CDS |
| AAGATGATCGGCTTATCATT+AGG | 0.441042 | 5.1:-73472788 | MS.gene062338:CDS |
| TCGTCCTCAAATGATCTAGA+AGG | 0.441149 | 5.1:-73472821 | MS.gene062338:CDS |
| ATCAAATCCCCACGACAAAC+AGG | 0.446099 | 5.1:+73473325 | None:intergenic |
| TTGCTTATTGCGGCGCCGTA+AGG | 0.457438 | 5.1:+73474292 | None:intergenic |
| TCGAGTCGGGTTCAGTTGGA+AGG | 0.458339 | 5.1:+73473770 | None:intergenic |
| TCGGCACGCTGTTTCTTAGT+TGG | 0.464891 | 5.1:-73473202 | MS.gene062338:CDS |
| TGGTGATAGTGAGATTGAAT+TGG | 0.470003 | 5.1:-73472924 | MS.gene062338:CDS |
| CTAGTGAGTAAAGACTTAAA+GGG | 0.474026 | 5.1:+73473160 | None:intergenic |
| GACTTGTGTGGGGTGAATAG+TGG | 0.483488 | 5.1:-73472944 | MS.gene062338:CDS |
| CATGTACTAACCTAACTCTC+TGG | 0.498661 | 5.1:+73473800 | None:intergenic |
| TTTAATATCAAGACTCATCT+GGG | 0.499567 | 5.1:-73473004 | MS.gene062338:CDS |
| GGTTATGATTGGAACAATAG+TGG | 0.500530 | 5.1:-73473713 | MS.gene062338:CDS |
| ACCCTAGTACAAATCACAAT+AGG | 0.501185 | 5.1:+73473259 | None:intergenic |
| AAATTTGTCCTGTTTGTCGT+GGG | 0.512966 | 5.1:-73473333 | MS.gene062338:CDS |
| CGAGTCGGGTTCAGTTGGAA+GGG | 0.523460 | 5.1:+73473771 | None:intergenic |
| ATTGAATTGGAGGAGTACAT+AGG | 0.524126 | 5.1:-73472911 | MS.gene062338:CDS |
| GTGTTTGTCAAAATTGTACT+CGG | 0.528986 | 5.1:-73473654 | MS.gene062338:CDS |
| CTTATTGCGGCGCCGTAAGG+TGG | 0.531287 | 5.1:+73474295 | None:intergenic |
| GGTAAGGAGCTTGTTTCTCA+TGG | 0.534806 | 5.1:-73473400 | MS.gene062338:CDS |
| TGATAGTGAGATTGAATTGG+AGG | 0.536096 | 5.1:-73472921 | MS.gene062338:CDS |
| ACAACCACCTCCTCCTTCAC+AGG | 0.545135 | 5.1:-73474260 | MS.gene062338:intron |
| TGTGAGGATTTGTGATGGTA+AGG | 0.546264 | 5.1:-73473416 | MS.gene062338:CDS |
| GTTCGGTTTGGCTAATGTTG+AGG | 0.547278 | 5.1:-73473065 | MS.gene062338:CDS |
| TGTTGCCACTCCATTGCAGA+GGG | 0.547819 | 5.1:+73474318 | None:intergenic |
| GAAATTTGTCCTGTTTGTCG+TGG | 0.553561 | 5.1:-73473334 | MS.gene062338:CDS |
| TGAATGCTAACCCTAATCAA+TGG | 0.555269 | 5.1:-73473630 | MS.gene062338:CDS |
| GGAATCTATGATAAGATGAT+CGG | 0.567757 | 5.1:-73472800 | MS.gene062338:CDS |
| GTGTTGCCACTCCATTGCAG+AGG | 0.575146 | 5.1:+73474317 | None:intergenic |
| AGAAACGCCAGAAGAAACGC+GGG | 0.576178 | 5.1:-73472853 | MS.gene062338:CDS |
| GCTACCTTATGATCTATTGG+AGG | 0.578421 | 5.1:-73472756 | MS.gene062338:CDS |
| TAGTTGGTGATATGTATTGG+AGG | 0.578584 | 5.1:-73473186 | MS.gene062338:CDS |
| ATGATAACCCTAACCTGTGA+AGG | 0.584574 | 5.1:+73474247 | None:intergenic |
| GCATCAGAAACCCTCTGCAA+TGG | 0.586753 | 5.1:-73474328 | MS.gene062338:CDS |
| TTGGAGGAGTACATAGGAGG+TGG | 0.593850 | 5.1:-73472905 | MS.gene062338:CDS |
| TCGTTGCGAGTTGCTTATTG+CGG | 0.596684 | 5.1:+73474282 | None:intergenic |
| ATTGCAGAGGGTTTCTGATG+CGG | 0.597516 | 5.1:+73474330 | None:intergenic |
| CTAACCTGTGAAGGAGGAGG+TGG | 0.600100 | 5.1:+73474256 | None:intergenic |
| TGTCGAGGAGGTTCATTCAG+AGG | 0.600213 | 5.1:-73473107 | MS.gene062338:CDS |
| AGTTGGTGATATGTATTGGA+GGG | 0.602581 | 5.1:-73473185 | MS.gene062338:CDS |
| AAACTCGAAGCAACTTTAGG+AGG | 0.606354 | 5.1:+73473295 | None:intergenic |
| CGAAGAGTAAGAAAGTGAGG+AGG | 0.607260 | 5.1:-73472685 | MS.gene062338:CDS |
| GAATTGGAGGAGTACATAGG+AGG | 0.608809 | 5.1:-73472908 | MS.gene062338:CDS |
| TTACCATCACAAATCCTCAC+AGG | 0.611825 | 5.1:+73473418 | None:intergenic |
| ACCCTAACCTGTGAAGGAGG+AGG | 0.611880 | 5.1:+73474253 | None:intergenic |
| ATCAAACAAAGCAATCGTGT+TGG | 0.612522 | 5.1:+73473234 | None:intergenic |
| AGGCGAAGAGTAAGAAAGTG+AGG | 0.612790 | 5.1:-73472688 | MS.gene062338:CDS |
| GATCTATTGGAGGAGCAGCT+GGG | 0.615705 | 5.1:-73472746 | MS.gene062338:CDS |
| TGTTTGTCAAAATTGTACTC+GGG | 0.620547 | 5.1:-73473653 | MS.gene062338:CDS |
| TTTGTTTGATCCGATTACAT+CGG | 0.620703 | 5.1:-73473221 | MS.gene062338:CDS |
| ATAACCCTAACCTGTGAAGG+AGG | 0.627381 | 5.1:+73474250 | None:intergenic |
| TCTGAATGATGAGGAATCTG+AGG | 0.627809 | 5.1:-73472708 | MS.gene062338:CDS |
| AAGTCTTCATCTGAATGATG+AGG | 0.634247 | 5.1:-73472717 | MS.gene062338:CDS |
| GAGAAACGCCAGAAGAAACG+CGG | 0.636478 | 5.1:-73472854 | MS.gene062338:CDS |
| ATATGTTGTGCTTGATGTCG+AGG | 0.641920 | 5.1:-73473122 | MS.gene062338:CDS |
| ACAAGTCATAACCAAAAGCA+TGG | 0.643564 | 5.1:+73472960 | None:intergenic |
| AGAAACCCTCTGCAATGGAG+TGG | 0.649231 | 5.1:-73474323 | MS.gene062338:CDS |
| CTATTGGAGGAGCAGCTGGG+TGG | 0.657467 | 5.1:-73472743 | MS.gene062338:CDS |
| GGAGTGGCAACACCACCTTA+CGG | 0.660886 | 5.1:-73474307 | MS.gene062338:CDS |
| ATGATCGGCTTATCATTAGG+TGG | 0.673199 | 5.1:-73472785 | MS.gene062338:CDS |
| TAAAGGCACAGGTTCCTGTG+AGG | 0.699737 | 5.1:-73473432 | MS.gene062338:CDS |
| GTTCCTGTGAGGATTTGTGA+TGG | 0.713156 | 5.1:-73473421 | MS.gene062338:CDS |
| AATTTGTCCTGTTTGTCGTG+GGG | 0.713440 | 5.1:-73473332 | MS.gene062338:CDS |
| TGTTGTGCTTGATGTCGAGG+AGG | 0.736408 | 5.1:-73473119 | MS.gene062338:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAATTGAATGAATGAAAA+AGG | + | chr5.1:73472809-73472828 | None:intergenic | 20.0% |
| !!! | ATCTCAATTTTTCTCTTTTT+CGG | - | chr5.1:73472831-73472850 | MS.gene062338:CDS | 20.0% |
| ! | AGAATCAAAAAGATGAAACA+AGG | - | chr5.1:73473508-73473527 | MS.gene062338:CDS | 25.0% |
| ! | ATTTAATATCAAGACTCATC+TGG | - | chr5.1:73474011-73474030 | MS.gene062338:intron | 25.0% |
| ! | TTTAATATCAAGACTCATCT+GGG | - | chr5.1:73474012-73474031 | MS.gene062338:intron | 25.0% |
| !!! | GAAGTTTGTTGATTTTGTAA+AGG | - | chr5.1:73473567-73473586 | MS.gene062338:CDS | 25.0% |
| !!! | GTGCAATTTTAATAAAGAAG+AGG | - | chr5.1:73474133-73474152 | MS.gene062338:intron | 25.0% |
| ATATGAAATTCCAGAGAGTT+AGG | - | chr5.1:73473206-73473225 | MS.gene062338:CDS | 30.0% | |
| CTAGTGAGTAAAGACTTAAA+GGG | + | chr5.1:73473859-73473878 | None:intergenic | 30.0% | |
| GGAATCTATGATAAGATGAT+CGG | - | chr5.1:73474216-73474235 | MS.gene062338:intron | 30.0% | |
| GTGTTTGTCAAAATTGTACT+CGG | - | chr5.1:73473362-73473381 | MS.gene062338:CDS | 30.0% | |
| TACACTTTCGATTTCAAACA+GGG | - | chr5.1:73472879-73472898 | MS.gene062338:CDS | 30.0% | |
| TATGCGCACTATATTTGATT+TGG | - | chr5.1:73473444-73473463 | MS.gene062338:CDS | 30.0% | |
| TCAAAAACCAATATCACACA+AGG | - | chr5.1:73473052-73473071 | MS.gene062338:CDS | 30.0% | |
| TGTTTGTCAAAATTGTACTC+GGG | - | chr5.1:73473363-73473382 | MS.gene062338:CDS | 30.0% | |
| TTTGTTTGATCCGATTACAT+CGG | - | chr5.1:73473795-73473814 | MS.gene062338:CDS | 30.0% | |
| ! | ATTAGTTTGATCCAAGTAGT+GGG | + | chr5.1:73473136-73473155 | None:intergenic | 30.0% |
| ! | CTGAACAAAAACCTTGATTT+TGG | + | chr5.1:73473278-73473297 | None:intergenic | 30.0% |
| ! | TATTAGTTTGATCCAAGTAG+TGG | + | chr5.1:73473137-73473156 | None:intergenic | 30.0% |
| ! | TCCTATTGTGATTTGTACTA+GGG | - | chr5.1:73473756-73473775 | MS.gene062338:CDS | 30.0% |
| !! | CACTATATTTGATTTGGAAC+AGG | - | chr5.1:73473450-73473469 | MS.gene062338:CDS | 30.0% |
| !! | TCTTAGTTGGTGATATGTAT+TGG | - | chr5.1:73473827-73473846 | MS.gene062338:intron | 30.0% |
| !!! | CTGGGTTATCTTTTGAAATT+TGG | - | chr5.1:73474030-73474049 | MS.gene062338:intron | 30.0% |
| AAATTTGTCCTGTTTGTCGT+GGG | - | chr5.1:73473683-73473702 | MS.gene062338:CDS | 35.0% | |
| AAGTCTTCATCTGAATGATG+AGG | - | chr5.1:73474299-73474318 | MS.gene062338:CDS | 35.0% | |
| AATGTCAAGATGCATACCAT+TGG | - | chr5.1:73472931-73472950 | MS.gene062338:CDS | 35.0% | |
| ACAAGTCATAACCAAAAGCA+TGG | + | chr5.1:73474059-73474078 | None:intergenic | 35.0% | |
| ACACTTTCGATTTCAAACAG+GGG | - | chr5.1:73472880-73472899 | MS.gene062338:CDS | 35.0% | |
| ACATTTGACACACATGTTAG+CGG | + | chr5.1:73473026-73473045 | None:intergenic | 35.0% | |
| ACCCTAGTACAAATCACAAT+AGG | + | chr5.1:73473760-73473779 | None:intergenic | 35.0% | |
| AGAGCTACCTTATGATCTAT+TGG | - | chr5.1:73474257-73474276 | MS.gene062338:intron | 35.0% | |
| ATCAAACAAAGCAATCGTGT+TGG | + | chr5.1:73473785-73473804 | None:intergenic | 35.0% | |
| CTACACTTTCGATTTCAAAC+AGG | - | chr5.1:73472878-73472897 | MS.gene062338:CDS | 35.0% | |
| CTCGAAAAAGACCAAAATCA+AGG | - | chr5.1:73473264-73473283 | MS.gene062338:CDS | 35.0% | |
| GAGTAAACCTTGTGTGATAT+TGG | + | chr5.1:73473062-73473081 | None:intergenic | 35.0% | |
| GATTCCTTCTAGATCATTTG+AGG | + | chr5.1:73474202-73474221 | None:intergenic | 35.0% | |
| GCTAGTGAGTAAAGACTTAA+AGG | + | chr5.1:73473860-73473879 | None:intergenic | 35.0% | |
| GGTTATGATTGGAACAATAG+TGG | - | chr5.1:73473303-73473322 | MS.gene062338:CDS | 35.0% | |
| GTTCAGAAAGAGGTTATGAT+TGG | - | chr5.1:73473292-73473311 | MS.gene062338:CDS | 35.0% | |
| TGAATGCTAACCCTAATCAA+TGG | - | chr5.1:73473386-73473405 | MS.gene062338:CDS | 35.0% | |
| ! | AAGATGATCGGCTTATCATT+AGG | - | chr5.1:73474228-73474247 | MS.gene062338:intron | 35.0% |
| ! | ATTGAATTGGAGGAGTACAT+AGG | - | chr5.1:73474105-73474124 | MS.gene062338:intron | 35.0% |
| ! | CAAGGTTTTTGTTCAGAAAG+AGG | - | chr5.1:73473282-73473301 | MS.gene062338:CDS | 35.0% |
| ! | GCAAGATTTTGTTGATCCAA+TGG | + | chr5.1:73472950-73472969 | None:intergenic | 35.0% |
| ! | GTCCTATTGTGATTTGTACT+AGG | - | chr5.1:73473755-73473774 | MS.gene062338:CDS | 35.0% |
| ! | TGATAGTGAGATTGAATTGG+AGG | - | chr5.1:73474095-73474114 | MS.gene062338:intron | 35.0% |
| ! | TGGTGATAGTGAGATTGAAT+TGG | - | chr5.1:73474092-73474111 | MS.gene062338:intron | 35.0% |
| ! | TTAGTTTGATCCAAGTAGTG+GGG | + | chr5.1:73473135-73473154 | None:intergenic | 35.0% |
| !! | AAATTTGGTGACCATGCTTT+TGG | - | chr5.1:73474045-73474064 | MS.gene062338:intron | 35.0% |
| !! | ACTGTTGATGGCAAAAAGTT+CGG | - | chr5.1:73473934-73473953 | MS.gene062338:intron | 35.0% |
| !! | AGTTGGTGATATGTATTGGA+GGG | - | chr5.1:73473831-73473850 | MS.gene062338:intron | 35.0% |
| !! | CTTTTGGTTATGACTTGTGT+GGG | - | chr5.1:73474061-73474080 | MS.gene062338:intron | 35.0% |
| !! | TAGTTGGTGATATGTATTGG+AGG | - | chr5.1:73473830-73473849 | MS.gene062338:intron | 35.0% |
| !! | TTTTGGTTATGACTTGTGTG+GGG | - | chr5.1:73474062-73474081 | MS.gene062338:intron | 35.0% |
| !!! | ATTTTGGTCTTTTTCGAGTC+GGG | + | chr5.1:73473262-73473281 | None:intergenic | 35.0% |
| !!! | GAACAGGCTATTTTGAAACA+TGG | - | chr5.1:73473466-73473485 | MS.gene062338:CDS | 35.0% |
| !!! | GATTTTGGTCTTTTTCGAGT+CGG | + | chr5.1:73473263-73473282 | None:intergenic | 35.0% |
| !!! | GCTATTTTGAAACATGGTGT+TGG | - | chr5.1:73473472-73473491 | MS.gene062338:CDS | 35.0% |
| !!! | TGTTGATTTTGTAAAGGCAC+AGG | - | chr5.1:73473573-73473592 | MS.gene062338:CDS | 35.0% |
| !!! | TTTTGAAACATGGTGTTGGT+AGG | - | chr5.1:73473476-73473495 | MS.gene062338:CDS | 35.0% |
| AAACTCGAAGCAACTTTAGG+AGG | + | chr5.1:73473724-73473743 | None:intergenic | 40.0% | |
| AATTTGTCCTGTTTGTCGTG+GGG | - | chr5.1:73473684-73473703 | MS.gene062338:CDS | 40.0% | |
| ACTCACTAGCAAAGAGTTAG+TGG | - | chr5.1:73473870-73473889 | MS.gene062338:intron | 40.0% | |
| ATATGTTGTGCTTGATGTCG+AGG | - | chr5.1:73473894-73473913 | MS.gene062338:intron | 40.0% | |
| ATGATAACCCTAACCTGTGA+AGG | + | chr5.1:73472772-73472791 | None:intergenic | 40.0% | |
| CATGTACTAACCTAACTCTC+TGG | + | chr5.1:73473219-73473238 | None:intergenic | 40.0% | |
| CATTCAGAGGTTACTGTTGA+TGG | - | chr5.1:73473922-73473941 | MS.gene062338:intron | 40.0% | |
| GAAATTTGTCCTGTTTGTCG+TGG | - | chr5.1:73473682-73473701 | MS.gene062338:CDS | 40.0% | |
| GCTACCTTATGATCTATTGG+AGG | - | chr5.1:73474260-73474279 | MS.gene062338:intron | 40.0% | |
| TAGTTTGATCCAAGTAGTGG+GGG | + | chr5.1:73473134-73473153 | None:intergenic | 40.0% | |
| TCGTCCTCAAATGATCTAGA+AGG | - | chr5.1:73474195-73474214 | MS.gene062338:intron | 40.0% | |
| TCTGAATGATGAGGAATCTG+AGG | - | chr5.1:73474308-73474327 | MS.gene062338:CDS | 40.0% | |
| TGATGGCAAAAAGTTCGGTT+TGG | - | chr5.1:73473939-73473958 | MS.gene062338:intron | 40.0% | |
| TGCTCCTCCAATAGATCATA+AGG | + | chr5.1:73474267-73474286 | None:intergenic | 40.0% | |
| TGTGAGGATTTGTGATGGTA+AGG | - | chr5.1:73473600-73473619 | MS.gene062338:CDS | 40.0% | |
| TTACCATCACAAATCCTCAC+AGG | + | chr5.1:73473601-73473620 | None:intergenic | 40.0% | |
| ! | ACAACAGCACTCCATTGATT+AGG | + | chr5.1:73473400-73473419 | None:intergenic | 40.0% |
| ! | ATGATCGGCTTATCATTAGG+TGG | - | chr5.1:73474231-73474250 | MS.gene062338:intron | 40.0% |
| ! | CAACAGCACTCCATTGATTA+GGG | + | chr5.1:73473399-73473418 | None:intergenic | 40.0% |
| ! | CCTAAAGTTGCTTCGAGTTT+GGG | - | chr5.1:73473724-73473743 | MS.gene062338:CDS | 40.0% |
| ! | GCTTCGAGTTTGGGAAATAT+TGG | - | chr5.1:73473733-73473752 | MS.gene062338:CDS | 40.0% |
| ! | GTTGCTCGTGTGAAAGATTT+TGG | - | chr5.1:73473973-73473992 | MS.gene062338:intron | 40.0% |
| ! | TCCTAAAGTTGCTTCGAGTT+TGG | - | chr5.1:73473723-73473742 | MS.gene062338:CDS | 40.0% |
| !! | GCTTTTGGTTATGACTTGTG+TGG | - | chr5.1:73474060-73474079 | MS.gene062338:intron | 40.0% |
| AGGCGAAGAGTAAGAAAGTG+AGG | - | chr5.1:73474328-73474347 | MS.gene062338:CDS | 45.0% | |
| ATAACCCTAACCTGTGAAGG+AGG | + | chr5.1:73472769-73472788 | None:intergenic | 45.0% | |
| ATCAAATCCCCACGACAAAC+AGG | + | chr5.1:73473694-73473713 | None:intergenic | 45.0% | |
| ATTGCAGAGGGTTTCTGATG+CGG | + | chr5.1:73472689-73472708 | None:intergenic | 45.0% | |
| ATTTACAACCCCCCACTACT+TGG | - | chr5.1:73473122-73473141 | MS.gene062338:CDS | 45.0% | |
| CCCAAACTCGAAGCAACTTT+AGG | + | chr5.1:73473727-73473746 | None:intergenic | 45.0% | |
| CGAAGAGTAAGAAAGTGAGG+AGG | - | chr5.1:73474331-73474350 | MS.gene062338:CDS | 45.0% | |
| GTTCCTGTGAGGATTTGTGA+TGG | - | chr5.1:73473595-73473614 | MS.gene062338:CDS | 45.0% | |
| TCGTTGCGAGTTGCTTATTG+CGG | + | chr5.1:73472737-73472756 | None:intergenic | 45.0% | |
| ! | AAACAGCGTGCCGATGTAAT+CGG | + | chr5.1:73473808-73473827 | None:intergenic | 45.0% |
| ! | AGTTTGATCCAAGTAGTGGG+GGG | + | chr5.1:73473133-73473152 | None:intergenic | 45.0% |
| ! | GAATTGGAGGAGTACATAGG+AGG | - | chr5.1:73474108-73474127 | MS.gene062338:intron | 45.0% |
| ! | GGTAAGGAGCTTGTTTCTCA+TGG | - | chr5.1:73473616-73473635 | MS.gene062338:CDS | 45.0% |
| ! | TTAGCGGTGTTTAGTTCGAG+TGG | + | chr5.1:73473010-73473029 | None:intergenic | 45.0% |
| !! | GTTCGGTTTGGCTAATGTTG+AGG | - | chr5.1:73473951-73473970 | MS.gene062338:intron | 45.0% |
| !!! | TTTTTCGAGTCGGGTTCAGT+TGG | + | chr5.1:73473253-73473272 | None:intergenic | 45.0% |
| ACAGGGAATGGTGTGGAATG+TGG | + | chr5.1:73472972-73472991 | None:intergenic | 50.0% | |
| ACCTCCTCCTTCACAGGTTA+GGG | - | chr5.1:73472762-73472781 | MS.gene062338:CDS | 50.0% | |
| AGAAACCCTCTGCAATGGAG+TGG | - | chr5.1:73472693-73472712 | MS.gene062338:CDS | 50.0% | |
| AGAAACGCCAGAAGAAACGC+GGG | - | chr5.1:73474163-73474182 | MS.gene062338:intron | 50.0% | |
| ATTGGCAACAGGGAATGGTG+TGG | + | chr5.1:73472979-73472998 | None:intergenic | 50.0% | |
| GACTTGTGTGGGGTGAATAG+TGG | - | chr5.1:73474072-73474091 | MS.gene062338:intron | 50.0% | |
| GAGAAACGCCAGAAGAAACG+CGG | - | chr5.1:73474162-73474181 | MS.gene062338:intron | 50.0% | |
| GATCTATTGGAGGAGCAGCT+GGG | - | chr5.1:73474270-73474289 | MS.gene062338:CDS | 50.0% | |
| GCATCAGAAACCCTCTGCAA+TGG | - | chr5.1:73472688-73472707 | MS.gene062338:CDS | 50.0% | |
| TGATCTATTGGAGGAGCAGC+TGG | - | chr5.1:73474269-73474288 | MS.gene062338:CDS | 50.0% | |
| TGTCGAGGAGGTTCATTCAG+AGG | - | chr5.1:73473909-73473928 | MS.gene062338:intron | 50.0% | |
| TGTTGCCACTCCATTGCAGA+GGG | + | chr5.1:73472701-73472720 | None:intergenic | 50.0% | |
| TGTTGTGCTTGATGTCGAGG+AGG | - | chr5.1:73473897-73473916 | MS.gene062338:intron | 50.0% | |
| ! | TAAAGGCACAGGTTCCTGTG+AGG | - | chr5.1:73473584-73473603 | MS.gene062338:CDS | 50.0% |
| ! | TTGGAGGAGTACATAGGAGG+TGG | - | chr5.1:73474111-73474130 | MS.gene062338:intron | 50.0% |
| !! | TCGGCACGCTGTTTCTTAGT+TGG | - | chr5.1:73473814-73473833 | MS.gene062338:CDS | 50.0% |
| ACAACCACCTCCTCCTTCAC+AGG | - | chr5.1:73472756-73472775 | MS.gene062338:CDS | 55.0% | |
| ACCCTAACCTGTGAAGGAGG+AGG | + | chr5.1:73472766-73472785 | None:intergenic | 55.0% | |
| CACCTCCTCCTTCACAGGTT+AGG | - | chr5.1:73472761-73472780 | MS.gene062338:CDS | 55.0% | |
| CGAGTCGGGTTCAGTTGGAA+GGG | + | chr5.1:73473248-73473267 | None:intergenic | 55.0% | |
| CTAACCTGTGAAGGAGGAGG+TGG | + | chr5.1:73472763-73472782 | None:intergenic | 55.0% | |
| GGAGTGGCAACACCACCTTA+CGG | - | chr5.1:73472709-73472728 | MS.gene062338:CDS | 55.0% | |
| GTGTTGCCACTCCATTGCAG+AGG | + | chr5.1:73472702-73472721 | None:intergenic | 55.0% | |
| TCGAGTCGGGTTCAGTTGGA+AGG | + | chr5.1:73473249-73473268 | None:intergenic | 55.0% | |
| TTGCTTATTGCGGCGCCGTA+AGG | + | chr5.1:73472727-73472746 | None:intergenic | 55.0% | |
| CTATTGGAGGAGCAGCTGGG+TGG | - | chr5.1:73474273-73474292 | MS.gene062338:CDS | 60.0% | |
| CTTATTGCGGCGCCGTAAGG+TGG | + | chr5.1:73472724-73472743 | None:intergenic | 60.0% | |
| GACGCTTCCCGCGTTTCTTC+TGG | + | chr5.1:73474173-73474192 | None:intergenic | 60.0% | |
| GTTCGAGTGGAGACGCGCAT+TGG | + | chr5.1:73472997-73473016 | None:intergenic | 60.0% | |
| ! | CGCGCATTGGCAACAGGGAA+TGG | + | chr5.1:73472984-73473003 | None:intergenic | 60.0% |
| ! | GGAGACGCGCATTGGCAACA+GGG | + | chr5.1:73472989-73473008 | None:intergenic | 60.0% |
| ! | TGGAGACGCGCATTGGCAAC+AGG | + | chr5.1:73472990-73473009 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 73472676 | 73474362 | 73472676 | ID=MS.gene062338 |
| chr5.1 | mRNA | 73472676 | 73474362 | 73472676 | ID=MS.gene062338.t1;Parent=MS.gene062338 |
| chr5.1 | exon | 73474261 | 73474362 | 73474261 | ID=MS.gene062338.t1.exon1;Parent=MS.gene062338.t1 |
| chr5.1 | CDS | 73474261 | 73474362 | 73474261 | ID=cds.MS.gene062338.t1;Parent=MS.gene062338.t1 |
| chr5.1 | exon | 73472676 | 73473845 | 73472676 | ID=MS.gene062338.t1.exon2;Parent=MS.gene062338.t1 |
| chr5.1 | CDS | 73472676 | 73473845 | 73472676 | ID=cds.MS.gene062338.t1;Parent=MS.gene062338.t1 |
| Gene Sequence |
| Protein sequence |
