Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06234.t1 | XP_003602789.1 | 97.2 | 387 | 10 | 1 | 1 | 386 | 1 | 387 | 3.60E-212 | 747.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06234.t1 | Q9SJE2 | 55.9 | 281 | 116 | 3 | 102 | 382 | 130 | 402 | 1.4e-84 | 314.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06234.t1 | G7J3D9 | 97.2 | 387 | 10 | 1 | 1 | 386 | 1 | 387 | 2.6e-212 | 747.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055510 | MS.gene06234 | 0.950651 | 1.06E-108 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06234.t1 | MTR_3g099020 | 97.158 | 387 | 10 | 1 | 1 | 386 | 1 | 387 | 0.0 | 774 |
| MS.gene06234.t1 | MTR_4g112970 | 52.313 | 281 | 126 | 3 | 102 | 382 | 126 | 398 | 1.37e-102 | 310 |
| MS.gene06234.t1 | MTR_1g109110 | 43.871 | 310 | 124 | 6 | 102 | 382 | 82 | 370 | 2.66e-77 | 243 |
| MS.gene06234.t1 | MTR_7g056233 | 39.423 | 312 | 171 | 5 | 88 | 382 | 56 | 366 | 2.21e-76 | 241 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06234.t1 | AT1G08510 | 55.872 | 281 | 116 | 3 | 102 | 382 | 130 | 402 | 1.40e-107 | 322 |
| MS.gene06234.t1 | AT3G25110 | 41.608 | 286 | 161 | 3 | 102 | 382 | 75 | 359 | 2.07e-77 | 243 |
| MS.gene06234.t1 | AT4G13050 | 39.661 | 295 | 166 | 5 | 102 | 385 | 74 | 367 | 7.43e-76 | 239 |
Find 66 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAAAGTGGACACAATTAA+TGG | 0.213280 | 3.1:+78898180 | MS.gene06234:CDS |
| GTTATTAGGTCCTATGAAAT+TGG | 0.286137 | 3.1:+78898330 | MS.gene06234:CDS |
| GCAATCTTGTGAAGGTAAAA+AGG | 0.290395 | 3.1:-78899162 | None:intergenic |
| TCTATTGACTGAATTATTAT+CGG | 0.310808 | 3.1:-78900577 | None:intergenic |
| CAAGCTTAACATTAGAGTTT+AGG | 0.318368 | 3.1:+78900487 | MS.gene06234:CDS |
| CTAAATCATGTTACAAGCTC+TGG | 0.322289 | 3.1:+78898665 | MS.gene06234:CDS |
| TGAGCCTAAGGAAACTCATT+TGG | 0.347394 | 3.1:+78898723 | MS.gene06234:CDS |
| GATGTTGCTCTTGTTACAAA+TGG | 0.353240 | 3.1:+78898267 | MS.gene06234:CDS |
| ACATTAGCTTACAAGGGAAT+TGG | 0.354573 | 3.1:+78898001 | MS.gene06234:CDS |
| GGGATAGGAGGAGATGGATT+TGG | 0.362524 | 3.1:+78898686 | MS.gene06234:CDS |
| TCCATGGTAGCAGTTCTATC+TGG | 0.363190 | 3.1:-78898354 | None:intergenic |
| TTGAAGGAAGGTTTGTGTTT+AGG | 0.363251 | 3.1:+78898298 | MS.gene06234:CDS |
| TCTATCTGGACCAATTTCAT+AGG | 0.414482 | 3.1:-78898340 | None:intergenic |
| GTGATTACAAATTGTAATCA+TGG | 0.416314 | 3.1:+78898147 | MS.gene06234:CDS |
| GATCAACACAAAGAAGGCTT+TGG | 0.438422 | 3.1:+78898053 | MS.gene06234:CDS |
| AAGAAATTGAAATTGATACT+TGG | 0.442643 | 3.1:+78898887 | MS.gene06234:CDS |
| GAGCCTAAGGAAACTCATTT+GGG | 0.450636 | 3.1:+78898724 | MS.gene06234:CDS |
| TGCCTTAGTTATGATCTCCT+TGG | 0.462334 | 3.1:-78898968 | None:intergenic |
| TCACCAATCACTCTTTCTGT+TGG | 0.465994 | 3.1:-78900552 | None:intergenic |
| ATTAATGGAACAAAGGTGAA+TGG | 0.467763 | 3.1:+78898195 | MS.gene06234:CDS |
| ATCAGCAACATTAGCTTACA+AGG | 0.469830 | 3.1:+78897994 | MS.gene06234:CDS |
| AGAAATTGAAATTGATACTT+GGG | 0.473173 | 3.1:+78898888 | MS.gene06234:CDS |
| CAACCCAAATGAGTTTCCTT+AGG | 0.476925 | 3.1:-78898727 | None:intergenic |
| ATGGGAGATTTGTTGAAGGA+AGG | 0.479142 | 3.1:+78898286 | MS.gene06234:CDS |
| AGATGTGTGTATTGCTGATC+GGG | 0.482567 | 3.1:-78900603 | None:intergenic |
| GAATGTGAGCAATGCAAAGA+AGG | 0.493810 | 3.1:+78898023 | MS.gene06234:CDS |
| GTGGATGCAGCAGGAAAGAA+TGG | 0.503767 | 3.1:+78898910 | MS.gene06234:CDS |
| ATGTTGCTCTTGTTACAAAT+GGG | 0.508572 | 3.1:+78898268 | MS.gene06234:CDS |
| TCTCCTTGGTGCAACGATCT+CGG | 0.511116 | 3.1:-78898954 | None:intergenic |
| GATACTTGGGTGGATGCAGC+AGG | 0.512312 | 3.1:+78898901 | MS.gene06234:CDS |
| TGTCCAACAGAAAGAGTGAT+TGG | 0.513252 | 3.1:+78900549 | MS.gene06234:CDS |
| TGAGAGAATACAATCTGGTT+TGG | 0.514880 | 3.1:+78899242 | MS.gene06234:CDS |
| TCTTTCTGTTGGACATGTCA+AGG | 0.515470 | 3.1:-78900541 | None:intergenic |
| TCCAGATAGAACTGCTACCA+TGG | 0.517690 | 3.1:+78898353 | MS.gene06234:CDS |
| CAACACAAAGAAGGCTTTGG+AGG | 0.518895 | 3.1:+78898056 | MS.gene06234:CDS |
| ATTTCACATTGTTCACATGC+TGG | 0.522323 | 3.1:-78900233 | None:intergenic |
| ATGAAAATCTTCGTTTGTTG+TGG | 0.528344 | 3.1:-78898122 | None:intergenic |
| TAAATCATGTTACAAGCTCT+GGG | 0.534439 | 3.1:+78898666 | MS.gene06234:CDS |
| CACCAAGGAGATCATAACTA+AGG | 0.539519 | 3.1:+78898966 | MS.gene06234:CDS |
| AAGTACAGAGATACAACAAA+TGG | 0.541558 | 3.1:+78898768 | MS.gene06234:CDS |
| AGAATGGAATGAGAAGAGAT+TGG | 0.544970 | 3.1:+78898926 | MS.gene06234:CDS |
| AGCTCTGGGATAGGAGGAGA+TGG | 0.547009 | 3.1:+78898680 | MS.gene06234:CDS |
| CATGTTACAAGCTCTGGGAT+AGG | 0.551503 | 3.1:+78898671 | MS.gene06234:CDS |
| TTGTTCGAGCTAGATCTGAA+TGG | 0.554018 | 3.1:+78900655 | MS.gene06234:CDS |
| GAATGGTTTACTAGTGGCAG+AGG | 0.556582 | 3.1:+78898212 | MS.gene06234:CDS |
| AAATATGATCAACACAAAGA+AGG | 0.557480 | 3.1:+78898047 | MS.gene06234:CDS |
| GTGAACAATGTGAAATACAT+TGG | 0.558503 | 3.1:+78900240 | MS.gene06234:CDS |
| AAAATTCATGAGTGTCTCCA+TGG | 0.562904 | 3.1:-78898370 | None:intergenic |
| GTTACAAGCTCTGGGATAGG+AGG | 0.564203 | 3.1:+78898674 | MS.gene06234:CDS |
| ACAAATGGGAGATTTGTTGA+AGG | 0.566686 | 3.1:+78898282 | MS.gene06234:CDS |
| ACAATGTGAAATACATTGGA+TGG | 0.571892 | 3.1:+78900244 | MS.gene06234:CDS |
| AATTGAAATTGATACTTGGG+TGG | 0.581420 | 3.1:+78898891 | MS.gene06234:CDS |
| CAGATGTGTGTATTGCTGAT+CGG | 0.582381 | 3.1:-78900604 | None:intergenic |
| CAACTCGCGAGATGAGCCTA+AGG | 0.586466 | 3.1:+78898711 | MS.gene06234:CDS |
| ACTGCTGAGAGAATACAATC+TGG | 0.588100 | 3.1:+78899237 | MS.gene06234:CDS |
| ACATCCATGTCATTCCACCT+TGG | 0.618207 | 3.1:-78900207 | None:intergenic |
| GGACACAATTAATGGAACAA+AGG | 0.619362 | 3.1:+78898188 | MS.gene06234:CDS |
| TAGCTACTGCAATCTTGTGA+AGG | 0.624182 | 3.1:-78899170 | None:intergenic |
| AAAGGTGAATGGTTTACTAG+TGG | 0.638305 | 3.1:+78898206 | MS.gene06234:CDS |
| TCTATGTATTACAGCCAAGG+TGG | 0.638940 | 3.1:+78900193 | MS.gene06234:intron |
| ACAGCCAAGGTGGAATGACA+TGG | 0.650706 | 3.1:+78900203 | MS.gene06234:intron |
| AGATCATAACTAAGGCAACA+AGG | 0.652831 | 3.1:+78898974 | MS.gene06234:CDS |
| ATGTACACAATCGAATACGT+TGG | 0.681585 | 3.1:+78900515 | MS.gene06234:CDS |
| TCAGCAACATTAGCTTACAA+GGG | 0.699612 | 3.1:+78897995 | MS.gene06234:CDS |
| AATCCGAGATCGTTGCACCA+AGG | 0.699826 | 3.1:+78898951 | MS.gene06234:CDS |
| CTGTGTTTGATGCAGCACAT+GGG | 0.722970 | 3.1:+78899074 | MS.gene06234:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATAAAAAAAAAAAAATGA+TGG | + | chr3.1:78900305-78900324 | MS.gene06234:intron | 10.0% |
| !! | AATTATGTATAATTATGCAA+AGG | - | chr3.1:78898826-78898845 | None:intergenic | 15.0% |
| !!! | TTATCTAATGTGTTATTTAA+GGG | - | chr3.1:78899671-78899690 | None:intergenic | 15.0% |
| !!! | TTTATCTAATGTGTTATTTA+AGG | - | chr3.1:78899672-78899691 | None:intergenic | 15.0% |
| !!! | TTTATTTTATTTTTTTGAGC+CGG | + | chr3.1:78898572-78898591 | MS.gene06234:intron | 15.0% |
| !!! | TTTTCTCTTAACATATTATT+TGG | - | chr3.1:78899054-78899073 | None:intergenic | 15.0% |
| !! | AAGAAATTGAAATTGATACT+TGG | + | chr3.1:78898887-78898906 | MS.gene06234:CDS | 20.0% |
| !! | AGAAATTGAAATTGATACTT+GGG | + | chr3.1:78898888-78898907 | MS.gene06234:CDS | 20.0% |
| !!! | CTATTTTCTCTATGTTATTA+AGG | + | chr3.1:78899587-78899606 | MS.gene06234:intron | 20.0% |
| !!! | GGAAATGGAAAATATTTTTT+AGG | + | chr3.1:78898634-78898653 | MS.gene06234:intron | 20.0% |
| !!! | TAATCTTCTAGTACTTTTAT+TGG | - | chr3.1:78900459-78900478 | None:intergenic | 20.0% |
| !!! | TCTATTGACTGAATTATTAT+CGG | - | chr3.1:78900580-78900599 | None:intergenic | 20.0% |
| !!! | TTTTCATTTAGCAATTTTCT+AGG | - | chr3.1:78898240-78898259 | None:intergenic | 20.0% |
| ! | AAATATGATCAACACAAAGA+AGG | + | chr3.1:78898047-78898066 | MS.gene06234:CDS | 25.0% |
| ! | ATGTATAATTATGCAAAGGT+AGG | - | chr3.1:78898822-78898841 | None:intergenic | 25.0% |
| ! | GTGATTACAAATTGTAATCA+TGG | + | chr3.1:78898147-78898166 | MS.gene06234:CDS | 25.0% |
| ! | TGAAAATGATAAGTTTGACA+GGG | + | chr3.1:78898861-78898880 | MS.gene06234:intron | 25.0% |
| ! | TGTATAATTATGCAAAGGTA+GGG | - | chr3.1:78898821-78898840 | None:intergenic | 25.0% |
| ! | TTGAAAAATAAACTTGAACC+AGG | - | chr3.1:78899286-78899305 | None:intergenic | 25.0% |
| ! | TTGATTGTTACACATAATCA+CGG | + | chr3.1:78899370-78899389 | MS.gene06234:intron | 25.0% |
| !!! | ATCTCTTTAGTTTTTTGTTC+CGG | - | chr3.1:78900113-78900132 | None:intergenic | 25.0% |
| !!! | GTTTTAACTAACATAAAGCA+TGG | + | chr3.1:78898602-78898621 | MS.gene06234:intron | 25.0% |
| !!! | TTAGGCAGATTTTTGTTATT+AGG | + | chr3.1:78898316-78898335 | MS.gene06234:CDS | 25.0% |
| AAATTTAGGAAGCGACTAAT+CGG | - | chr3.1:78899328-78899347 | None:intergenic | 30.0% | |
| AAGTACAGAGATACAACAAA+TGG | + | chr3.1:78898768-78898787 | MS.gene06234:CDS | 30.0% | |
| AATTGAAATTGATACTTGGG+TGG | + | chr3.1:78898891-78898910 | MS.gene06234:CDS | 30.0% | |
| ACAATCAAGTTTCATAGAAG+TGG | - | chr3.1:78899358-78899377 | None:intergenic | 30.0% | |
| ACAATGTGAAATACATTGGA+TGG | + | chr3.1:78900244-78900263 | MS.gene06234:CDS | 30.0% | |
| ATCAACATAAGATGTTGATC+TGG | - | chr3.1:78900006-78900025 | None:intergenic | 30.0% | |
| ATGTTGCTCTTGTTACAAAT+GGG | + | chr3.1:78898268-78898287 | MS.gene06234:CDS | 30.0% | |
| ATTAATGGAACAAAGGTGAA+TGG | + | chr3.1:78898195-78898214 | MS.gene06234:CDS | 30.0% | |
| CAAGCTTAACATTAGAGTTT+AGG | + | chr3.1:78900487-78900506 | MS.gene06234:CDS | 30.0% | |
| CATAAAGTGGACACAATTAA+TGG | + | chr3.1:78898180-78898199 | MS.gene06234:CDS | 30.0% | |
| CATGAAACTTGATTCACATT+TGG | + | chr3.1:78898476-78898495 | MS.gene06234:intron | 30.0% | |
| CTGAAAATGATAAGTTTGAC+AGG | + | chr3.1:78898860-78898879 | MS.gene06234:intron | 30.0% | |
| CTGTAAGTTTATTTCATACC+TGG | + | chr3.1:78899265-78899284 | MS.gene06234:intron | 30.0% | |
| GAAAATGATAAGTTTGACAG+GGG | + | chr3.1:78898862-78898881 | MS.gene06234:intron | 30.0% | |
| GAACAATTGTGTTGTACTTT+CGG | + | chr3.1:78899459-78899478 | MS.gene06234:intron | 30.0% | |
| GGATGAGACATTTAACATAA+TGG | + | chr3.1:78899877-78899896 | MS.gene06234:intron | 30.0% | |
| GTGAACAATGTGAAATACAT+TGG | + | chr3.1:78900240-78900259 | MS.gene06234:CDS | 30.0% | |
| GTTAGTTAAAACAGCAAATC+CGG | - | chr3.1:78898594-78898613 | None:intergenic | 30.0% | |
| GTTATTAGGTCCTATGAAAT+TGG | + | chr3.1:78898330-78898349 | MS.gene06234:CDS | 30.0% | |
| TAAATCATGTTACAAGCTCT+GGG | + | chr3.1:78898666-78898685 | MS.gene06234:CDS | 30.0% | |
| TCAACATAAGATGTTGATCT+GGG | - | chr3.1:78900005-78900024 | None:intergenic | 30.0% | |
| ! | AAATCTTTTCTACGTCGAAA+TGG | + | chr3.1:78899550-78899569 | MS.gene06234:intron | 30.0% |
| ! | ATGAAAATCTTCGTTTGTTG+TGG | - | chr3.1:78898125-78898144 | None:intergenic | 30.0% |
| ! | CAACAAACGAAGATTTTCAT+TGG | + | chr3.1:78898125-78898144 | MS.gene06234:CDS | 30.0% |
| ! | TGGTAGTACTTTTCATAAAG+TGG | + | chr3.1:78898167-78898186 | MS.gene06234:CDS | 30.0% |
| !! | AAGTCAGATTTTGAGTAAGA+TGG | + | chr3.1:78899856-78899875 | MS.gene06234:intron | 30.0% |
| !! | ATACATTGGATGGATTTTAG+AGG | + | chr3.1:78900254-78900273 | MS.gene06234:CDS | 30.0% |
| !! | ATTATGTGCTGATTGATTGT+TGG | + | chr3.1:78900024-78900043 | MS.gene06234:intron | 30.0% |
| !! | TGAAAAGCAAAACTGATTTG+AGG | + | chr3.1:78899736-78899755 | MS.gene06234:intron | 30.0% |
| AAAATTCATGAGTGTCTCCA+TGG | - | chr3.1:78898373-78898392 | None:intergenic | 35.0% | |
| AAAGGTGAATGGTTTACTAG+TGG | + | chr3.1:78898206-78898225 | MS.gene06234:CDS | 35.0% | |
| AACACAACGATTGATCATGT+GGG | - | chr3.1:78898529-78898548 | None:intergenic | 35.0% | |
| AATTTGGCAAAAATCCGTTG+AGG | + | chr3.1:78899954-78899973 | MS.gene06234:intron | 35.0% | |
| ACTTCATTAAGGATTGAGCT+TGG | + | chr3.1:78900080-78900099 | MS.gene06234:intron | 35.0% | |
| AGAATGGAATGAGAAGAGAT+TGG | + | chr3.1:78898926-78898945 | MS.gene06234:CDS | 35.0% | |
| AGATCATAACTAAGGCAACA+AGG | + | chr3.1:78898974-78898993 | MS.gene06234:CDS | 35.0% | |
| ATGTACACAATCGAATACGT+TGG | + | chr3.1:78900515-78900534 | MS.gene06234:CDS | 35.0% | |
| ATTTCACATTGTTCACATGC+TGG | - | chr3.1:78900236-78900255 | None:intergenic | 35.0% | |
| CAAGTTTCATGTTATACGTG+TGG | - | chr3.1:78898467-78898486 | None:intergenic | 35.0% | |
| CATAAAGCATGGATGAACTA+AGG | + | chr3.1:78898613-78898632 | MS.gene06234:intron | 35.0% | |
| CTAAATCATGTTACAAGCTC+TGG | + | chr3.1:78898665-78898684 | MS.gene06234:CDS | 35.0% | |
| CTTCATTAAGGATTGAGCTT+GGG | + | chr3.1:78900081-78900100 | MS.gene06234:intron | 35.0% | |
| CTTCGTAGTAGACTTCATTA+AGG | + | chr3.1:78900069-78900088 | MS.gene06234:intron | 35.0% | |
| GAAGTGGAGAAAGCAAATTT+AGG | - | chr3.1:78899342-78899361 | None:intergenic | 35.0% | |
| GATGTTGCTCTTGTTACAAA+TGG | + | chr3.1:78898267-78898286 | MS.gene06234:CDS | 35.0% | |
| GCAATCTTGTGAAGGTAAAA+AGG | - | chr3.1:78899165-78899184 | None:intergenic | 35.0% | |
| GGACACAATTAATGGAACAA+AGG | + | chr3.1:78898188-78898207 | MS.gene06234:CDS | 35.0% | |
| TCTATCTGGACCAATTTCAT+AGG | - | chr3.1:78898343-78898362 | None:intergenic | 35.0% | |
| TGAGAGAATACAATCTGGTT+TGG | + | chr3.1:78899242-78899261 | MS.gene06234:CDS | 35.0% | |
| TTCTCTATGTATTACAGCCA+AGG | + | chr3.1:78900190-78900209 | MS.gene06234:intron | 35.0% | |
| TTGAAGGAAGGTTTGTGTTT+AGG | + | chr3.1:78898298-78898317 | MS.gene06234:CDS | 35.0% | |
| ! | ACATTAGCTTACAAGGGAAT+TGG | + | chr3.1:78898001-78898020 | MS.gene06234:CDS | 35.0% |
| ! | AGCTCTTTTCTAACTTCTTC+AGG | - | chr3.1:78899138-78899157 | None:intergenic | 35.0% |
| ! | ATCAGCAACATTAGCTTACA+AGG | + | chr3.1:78897994-78898013 | MS.gene06234:CDS | 35.0% |
| ! | GACACTCATGAATTTTCTTC+AGG | + | chr3.1:78898377-78898396 | MS.gene06234:CDS | 35.0% |
| ! | TCAGCAACATTAGCTTACAA+GGG | + | chr3.1:78897995-78898014 | MS.gene06234:CDS | 35.0% |
| !! | AAAGCAAAACTGATTTGAGG+TGG | + | chr3.1:78899739-78899758 | MS.gene06234:intron | 35.0% |
| !! | ACAAATGGGAGATTTGTTGA+AGG | + | chr3.1:78898282-78898301 | MS.gene06234:CDS | 35.0% |
| ACTGCTGAGAGAATACAATC+TGG | + | chr3.1:78899237-78899256 | MS.gene06234:CDS | 40.0% | |
| AGATGTGTGTATTGCTGATC+GGG | - | chr3.1:78900606-78900625 | None:intergenic | 40.0% | |
| CAACCCAAATGAGTTTCCTT+AGG | - | chr3.1:78898730-78898749 | None:intergenic | 40.0% | |
| CACCAAGGAGATCATAACTA+AGG | + | chr3.1:78898966-78898985 | MS.gene06234:CDS | 40.0% | |
| CAGATGTGTGTATTGCTGAT+CGG | - | chr3.1:78900607-78900626 | None:intergenic | 40.0% | |
| CCACGAAGATAATCTCTCAA+CGG | - | chr3.1:78899980-78899999 | None:intergenic | 40.0% | |
| GAACACAACGATTGATCATG+TGG | - | chr3.1:78898530-78898549 | None:intergenic | 40.0% | |
| GAATGTGAGCAATGCAAAGA+AGG | + | chr3.1:78898023-78898042 | MS.gene06234:CDS | 40.0% | |
| GAGCCTAAGGAAACTCATTT+GGG | + | chr3.1:78898724-78898743 | MS.gene06234:CDS | 40.0% | |
| GATCAACACAAAGAAGGCTT+TGG | + | chr3.1:78898053-78898072 | MS.gene06234:CDS | 40.0% | |
| GCATGGATGAACTAAGGAAA+TGG | + | chr3.1:78898619-78898638 | MS.gene06234:intron | 40.0% | |
| TAGCTACTGCAATCTTGTGA+AGG | - | chr3.1:78899173-78899192 | None:intergenic | 40.0% | |
| TCACCAATCACTCTTTCTGT+TGG | - | chr3.1:78900555-78900574 | None:intergenic | 40.0% | |
| TCTATGTATTACAGCCAAGG+TGG | + | chr3.1:78900193-78900212 | MS.gene06234:intron | 40.0% | |
| TCTTTCTGTTGGACATGTCA+AGG | - | chr3.1:78900544-78900563 | None:intergenic | 40.0% | |
| TGAGCCTAAGGAAACTCATT+TGG | + | chr3.1:78898723-78898742 | MS.gene06234:CDS | 40.0% | |
| TGCCTTAGTTATGATCTCCT+TGG | - | chr3.1:78898971-78898990 | None:intergenic | 40.0% | |
| TGTCCAACAGAAAGAGTGAT+TGG | + | chr3.1:78900549-78900568 | MS.gene06234:CDS | 40.0% | |
| TTGTTCGAGCTAGATCTGAA+TGG | + | chr3.1:78900655-78900674 | MS.gene06234:CDS | 40.0% | |
| ! | GGCAGAGTTTCTAGAGAATT+TGG | + | chr3.1:78899938-78899957 | MS.gene06234:intron | 40.0% |
| !! | ATGGGAGATTTGTTGAAGGA+AGG | + | chr3.1:78898286-78898305 | MS.gene06234:CDS | 40.0% |
| AATGTGTACGTTTCTCCTGG+TGG | + | chr3.1:78899900-78899919 | MS.gene06234:intron | 45.0% | |
| ACATCCATGTCATTCCACCT+TGG | - | chr3.1:78900210-78900229 | None:intergenic | 45.0% | |
| ACTGTGTTTGATGCAGCACA+TGG | + | chr3.1:78899073-78899092 | MS.gene06234:intron | 45.0% | |
| CCGTTGAGAGATTATCTTCG+TGG | + | chr3.1:78899977-78899996 | MS.gene06234:intron | 45.0% | |
| CTGTGTTTGATGCAGCACAT+GGG | + | chr3.1:78899074-78899093 | MS.gene06234:intron | 45.0% | |
| GAATGGTTTACTAGTGGCAG+AGG | + | chr3.1:78898212-78898231 | MS.gene06234:CDS | 45.0% | |
| TAATCTCTCAACGGCCTCAA+CGG | - | chr3.1:78899971-78899990 | None:intergenic | 45.0% | |
| TCCAGATAGAACTGCTACCA+TGG | + | chr3.1:78898353-78898372 | MS.gene06234:CDS | 45.0% | |
| TCCATGGTAGCAGTTCTATC+TGG | - | chr3.1:78898357-78898376 | None:intergenic | 45.0% | |
| TGGAATGTGTACGTTTCTCC+TGG | + | chr3.1:78899897-78899916 | MS.gene06234:intron | 45.0% | |
| TGTTTGCATGTACAACACCC+AGG | - | chr3.1:78899825-78899844 | None:intergenic | 45.0% | |
| TTAAGGATTGAGCTTGGGTC+TGG | + | chr3.1:78900086-78900105 | MS.gene06234:intron | 45.0% | |
| ! | CAACACAAAGAAGGCTTTGG+AGG | + | chr3.1:78898056-78898075 | MS.gene06234:CDS | 45.0% |
| ! | TATAAAAGTACACCGCCACC+AGG | - | chr3.1:78899918-78899937 | None:intergenic | 45.0% |
| !! | CATGTTACAAGCTCTGGGAT+AGG | + | chr3.1:78898671-78898690 | MS.gene06234:CDS | 45.0% |
| !! | GAGTTGATGAAACGCAACTG+AGG | + | chr3.1:78899779-78899798 | MS.gene06234:intron | 45.0% |
| !!! | TGGTGGCGGTGTACTTTTAT+AGG | + | chr3.1:78899917-78899936 | MS.gene06234:intron | 45.0% |
| AATCCGAGATCGTTGCACCA+AGG | + | chr3.1:78898951-78898970 | MS.gene06234:CDS | 50.0% | |
| ACAGCCAAGGTGGAATGACA+TGG | + | chr3.1:78900203-78900222 | MS.gene06234:intron | 50.0% | |
| GTGGATGCAGCAGGAAAGAA+TGG | + | chr3.1:78898910-78898929 | MS.gene06234:CDS | 50.0% | |
| TGAAACGCAACTGAGGACGA+TGG | + | chr3.1:78899786-78899805 | MS.gene06234:intron | 50.0% | |
| ! | GGGATAGGAGGAGATGGATT+TGG | + | chr3.1:78898686-78898705 | MS.gene06234:CDS | 50.0% |
| ! | TCTCCTTGGTGCAACGATCT+CGG | - | chr3.1:78898957-78898976 | None:intergenic | 50.0% |
| !! | GGTGGACTGAGATCGACAAT+CGG | + | chr3.1:78899757-78899776 | MS.gene06234:intron | 50.0% |
| !! | GTTACAAGCTCTGGGATAGG+AGG | + | chr3.1:78898674-78898693 | MS.gene06234:CDS | 50.0% |
| AGGACGATGGCTGAGCTCTT+CGG | + | chr3.1:78899799-78899818 | MS.gene06234:intron | 55.0% | |
| CAACTCGCGAGATGAGCCTA+AGG | + | chr3.1:78898711-78898730 | MS.gene06234:CDS | 55.0% | |
| GATACTTGGGTGGATGCAGC+AGG | + | chr3.1:78898901-78898920 | MS.gene06234:CDS | 55.0% | |
| GATTGAGCTTGGGTCTGGTC+CGG | + | chr3.1:78900091-78900110 | MS.gene06234:intron | 55.0% | |
| GTGTACGTTTCTCCTGGTGG+CGG | + | chr3.1:78899903-78899922 | MS.gene06234:intron | 55.0% | |
| !! | AGCTCTGGGATAGGAGGAGA+TGG | + | chr3.1:78898680-78898699 | MS.gene06234:CDS | 55.0% |
| ATGGCTGAGCTCTTCGGCCT+GGG | + | chr3.1:78899805-78899824 | MS.gene06234:intron | 60.0% | |
| GATGGCTGAGCTCTTCGGCC+TGG | + | chr3.1:78899804-78899823 | MS.gene06234:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 78897985 | 78900701 | 78897985 | ID=MS.gene06234 |
| chr3.1 | mRNA | 78897985 | 78900701 | 78897985 | ID=MS.gene06234.t1;Parent=MS.gene06234 |
| chr3.1 | exon | 78897985 | 78898398 | 78897985 | ID=MS.gene06234.t1.exon1;Parent=MS.gene06234.t1 |
| chr3.1 | CDS | 78897985 | 78898398 | 78897985 | ID=cds.MS.gene06234.t1;Parent=MS.gene06234.t1 |
| chr3.1 | exon | 78898656 | 78898789 | 78898656 | ID=MS.gene06234.t1.exon2;Parent=MS.gene06234.t1 |
| chr3.1 | CDS | 78898656 | 78898789 | 78898656 | ID=cds.MS.gene06234.t1;Parent=MS.gene06234.t1 |
| chr3.1 | exon | 78898882 | 78898995 | 78898882 | ID=MS.gene06234.t1.exon3;Parent=MS.gene06234.t1 |
| chr3.1 | CDS | 78898882 | 78898995 | 78898882 | ID=cds.MS.gene06234.t1;Parent=MS.gene06234.t1 |
| chr3.1 | exon | 78899089 | 78899266 | 78899089 | ID=MS.gene06234.t1.exon4;Parent=MS.gene06234.t1 |
| chr3.1 | CDS | 78899089 | 78899266 | 78899089 | ID=cds.MS.gene06234.t1;Parent=MS.gene06234.t1 |
| chr3.1 | exon | 78900207 | 78900275 | 78900207 | ID=MS.gene06234.t1.exon5;Parent=MS.gene06234.t1 |
| chr3.1 | CDS | 78900207 | 78900275 | 78900207 | ID=cds.MS.gene06234.t1;Parent=MS.gene06234.t1 |
| chr3.1 | exon | 78900450 | 78900701 | 78900450 | ID=MS.gene06234.t1.exon6;Parent=MS.gene06234.t1 |
| chr3.1 | CDS | 78900450 | 78900701 | 78900450 | ID=cds.MS.gene06234.t1;Parent=MS.gene06234.t1 |
| Gene Sequence |
| Protein sequence |
