Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055510.t1 | XP_003602789.1 | 96.9 | 387 | 11 | 1 | 1 | 386 | 1 | 387 | 4.70E-212 | 746.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055510.t1 | Q9SJE2 | 55.9 | 281 | 116 | 3 | 102 | 382 | 130 | 402 | 1.4e-84 | 314.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055510.t1 | G7J3D9 | 96.9 | 387 | 11 | 1 | 1 | 386 | 1 | 387 | 3.4e-212 | 746.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050082 | MS.gene055510 | 0.811831 | 5.75E-51 | -1.69E-46 |
| MS.gene055510 | MS.gene06234 | 0.950651 | 1.06E-108 | -1.69E-46 |
| MS.gene055510 | MS.gene28537 | 0.82339 | 1.42E-53 | -1.69E-46 |
| MS.gene055510 | MS.gene39959 | 0.803333 | 3.67E-49 | -1.69E-46 |
| MS.gene055510 | MS.gene44966 | 0.832471 | 9.28E-56 | -1.69E-46 |
| MS.gene055510 | MS.gene50534 | 0.804983 | 1.66E-49 | -1.69E-46 |
| MS.gene055510 | MS.gene64069 | 0.812281 | 4.59E-51 | -1.69E-46 |
| MS.gene055510 | MS.gene88084 | 0.818578 | 1.82E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055510.t1 | MTR_3g099020 | 96.899 | 387 | 11 | 1 | 1 | 386 | 1 | 387 | 0.0 | 774 |
| MS.gene055510.t1 | MTR_4g112970 | 52.313 | 281 | 126 | 3 | 102 | 382 | 126 | 398 | 1.22e-102 | 310 |
| MS.gene055510.t1 | MTR_1g109110 | 43.871 | 310 | 124 | 6 | 102 | 382 | 82 | 370 | 2.44e-77 | 243 |
| MS.gene055510.t1 | MTR_7g056233 | 39.423 | 312 | 171 | 5 | 88 | 382 | 56 | 366 | 1.98e-76 | 241 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055510.t1 | AT1G08510 | 55.872 | 281 | 116 | 3 | 102 | 382 | 130 | 402 | 1.59e-107 | 322 |
| MS.gene055510.t1 | AT3G25110 | 41.608 | 286 | 161 | 3 | 102 | 382 | 75 | 359 | 2.33e-77 | 243 |
| MS.gene055510.t1 | AT4G13050 | 37.318 | 343 | 183 | 8 | 55 | 385 | 45 | 367 | 6.19e-76 | 239 |
Find 66 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAAAGTGGACACAGTTAA+TGG | 0.236515 | 3.2:+82419353 | MS.gene055510:CDS |
| GTTATTAGGTCCTATGAAAT+TGG | 0.286137 | 3.2:+82419503 | MS.gene055510:CDS |
| GCAATCTTGTGAAGGTAAAA+AGG | 0.295317 | 3.2:-82420335 | None:intergenic |
| TCTATTGACTGAATTATTAT+CGG | 0.310808 | 3.2:-82421742 | None:intergenic |
| CAAGCTTAACATTAGAGTTT+AGG | 0.318368 | 3.2:+82421652 | MS.gene055510:CDS |
| CTAAATCATGTTACAAGCTC+TGG | 0.322289 | 3.2:+82419838 | MS.gene055510:CDS |
| TGAGCCTAAGGAAACTCATT+TGG | 0.347394 | 3.2:+82419896 | MS.gene055510:CDS |
| GATGTTGCTCTTGTTACAAA+TGG | 0.353240 | 3.2:+82419440 | MS.gene055510:CDS |
| ACATTAGCTTACAAGGGAAT+TGG | 0.354573 | 3.2:+82419174 | MS.gene055510:CDS |
| GGGATAGGAGGAGATGGATT+TGG | 0.362524 | 3.2:+82419859 | MS.gene055510:CDS |
| TCCATGGTAGCAGTTCTATC+TGG | 0.363190 | 3.2:-82419527 | None:intergenic |
| TTGAAGGAAGGTTTGTGTTT+AGG | 0.363251 | 3.2:+82419471 | MS.gene055510:CDS |
| TCTATCTGGACCAATTTCAT+AGG | 0.414482 | 3.2:-82419513 | None:intergenic |
| GTGATTACAAATTGTAATCA+TGG | 0.416314 | 3.2:+82419320 | MS.gene055510:CDS |
| GATCAACACAAAGAAGGCTT+TGG | 0.438422 | 3.2:+82419226 | MS.gene055510:CDS |
| AAGAAATTGAAATTGATACT+TGG | 0.442643 | 3.2:+82420060 | MS.gene055510:CDS |
| GAGCCTAAGGAAACTCATTT+GGG | 0.450636 | 3.2:+82419897 | MS.gene055510:CDS |
| TGCCTTAGTTATGATCTCCT+TGG | 0.462334 | 3.2:-82420141 | None:intergenic |
| TCACCAATCACTCTTTCTGT+TGG | 0.465994 | 3.2:-82421717 | None:intergenic |
| ATCAGCAACATTAGCTTACA+AGG | 0.469830 | 3.2:+82419167 | MS.gene055510:CDS |
| AGAAATTGAAATTGATACTT+GGG | 0.473173 | 3.2:+82420061 | MS.gene055510:CDS |
| CAACCCAAATGAGTTTCCTT+AGG | 0.476925 | 3.2:-82419900 | None:intergenic |
| GTTAATGGAACAAAGGTGAA+TGG | 0.477738 | 3.2:+82419368 | MS.gene055510:CDS |
| ATGGGAGATTTGTTGAAGGA+AGG | 0.479142 | 3.2:+82419459 | MS.gene055510:CDS |
| AGATGTGTGTATTGCTGATC+GGG | 0.482567 | 3.2:-82421768 | None:intergenic |
| GAATGTGAGCAATGCAAAGA+AGG | 0.493810 | 3.2:+82419196 | MS.gene055510:CDS |
| GTGGATGCAGCAGGAAAGAA+TGG | 0.503767 | 3.2:+82420083 | MS.gene055510:CDS |
| ATGTTGCTCTTGTTACAAAT+GGG | 0.508572 | 3.2:+82419441 | MS.gene055510:CDS |
| TCTCCTTGGTGCAACGATCT+CGG | 0.511116 | 3.2:-82420127 | None:intergenic |
| GATACTTGGGTGGATGCAGC+AGG | 0.512312 | 3.2:+82420074 | MS.gene055510:CDS |
| TGTCCAACAGAAAGAGTGAT+TGG | 0.513252 | 3.2:+82421714 | MS.gene055510:CDS |
| TGAGAGAATACAATCTGGTT+TGG | 0.514880 | 3.2:+82420415 | MS.gene055510:CDS |
| TCTTTCTGTTGGACATGTCA+AGG | 0.515470 | 3.2:-82421706 | None:intergenic |
| TCCAGATAGAACTGCTACCA+TGG | 0.517690 | 3.2:+82419526 | MS.gene055510:CDS |
| CAACACAAAGAAGGCTTTGG+AGG | 0.518895 | 3.2:+82419229 | MS.gene055510:CDS |
| ATTTCACATTGTTCACATGC+TGG | 0.522323 | 3.2:-82421402 | None:intergenic |
| ATGAAAATCTTCGTTTGTTG+TGG | 0.528344 | 3.2:-82419295 | None:intergenic |
| TAAATCATGTTACAAGCTCT+GGG | 0.534439 | 3.2:+82419839 | MS.gene055510:CDS |
| CACCAAGGAGATCATAACTA+AGG | 0.539519 | 3.2:+82420139 | MS.gene055510:CDS |
| AAGTACAGAGATACAACAAA+TGG | 0.541558 | 3.2:+82419941 | MS.gene055510:CDS |
| AGAATGGAATGAGAAGAGAT+TGG | 0.544970 | 3.2:+82420099 | MS.gene055510:CDS |
| AGCTCTGGGATAGGAGGAGA+TGG | 0.547009 | 3.2:+82419853 | MS.gene055510:CDS |
| CATGTTACAAGCTCTGGGAT+AGG | 0.551503 | 3.2:+82419844 | MS.gene055510:CDS |
| TTGTTCGAGCTAGATCTGAA+TGG | 0.554018 | 3.2:+82421820 | MS.gene055510:CDS |
| GAATGGTTTACTAGTGGCAG+AGG | 0.556582 | 3.2:+82419385 | MS.gene055510:CDS |
| AAATATGATCAACACAAAGA+AGG | 0.557480 | 3.2:+82419220 | MS.gene055510:CDS |
| GTGAACAATGTGAAATACAT+TGG | 0.558503 | 3.2:+82421409 | MS.gene055510:CDS |
| AAAATTCATGAGTGTCTCCA+TGG | 0.562904 | 3.2:-82419543 | None:intergenic |
| GTTACAAGCTCTGGGATAGG+AGG | 0.564203 | 3.2:+82419847 | MS.gene055510:CDS |
| ACAAATGGGAGATTTGTTGA+AGG | 0.566686 | 3.2:+82419455 | MS.gene055510:CDS |
| ACAATGTGAAATACATTGGA+TGG | 0.571892 | 3.2:+82421413 | MS.gene055510:CDS |
| AATTGAAATTGATACTTGGG+TGG | 0.581420 | 3.2:+82420064 | MS.gene055510:CDS |
| CAGATGTGTGTATTGCTGAT+CGG | 0.582381 | 3.2:-82421769 | None:intergenic |
| CAACTCGCGAGATGAGCCTA+AGG | 0.586466 | 3.2:+82419884 | MS.gene055510:CDS |
| ACTGCTGAGAGAATACAATC+TGG | 0.588100 | 3.2:+82420410 | MS.gene055510:CDS |
| ACATCCATGTCATTCCACCT+TGG | 0.618207 | 3.2:-82421376 | None:intergenic |
| TAGCTACAGCAATCTTGTGA+AGG | 0.626622 | 3.2:-82420343 | None:intergenic |
| AAAGGTGAATGGTTTACTAG+TGG | 0.638305 | 3.2:+82419379 | MS.gene055510:CDS |
| TCTATGTATTACAGCCAAGG+TGG | 0.638940 | 3.2:+82421362 | MS.gene055510:intron |
| ACAGCCAAGGTGGAATGACA+TGG | 0.650706 | 3.2:+82421372 | MS.gene055510:intron |
| AGATCATAACTAAGGCAACA+AGG | 0.652831 | 3.2:+82420147 | MS.gene055510:CDS |
| GGACACAGTTAATGGAACAA+AGG | 0.657244 | 3.2:+82419361 | MS.gene055510:CDS |
| ATGTACACAATCGAATACGT+TGG | 0.681585 | 3.2:+82421680 | MS.gene055510:CDS |
| TCAGCAACATTAGCTTACAA+GGG | 0.699612 | 3.2:+82419168 | MS.gene055510:CDS |
| AATCCGAGATCGTTGCACCA+AGG | 0.699826 | 3.2:+82420124 | MS.gene055510:CDS |
| CTGTGTTTGATGCAGCACAT+GGG | 0.722970 | 3.2:+82420247 | MS.gene055510:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTCATAAAAAAAAATGA+TGG | + | chr3.2:82421470-82421489 | MS.gene055510:intron | 10.0% |
| !! | AATTATGTATAATTATGCAA+AGG | - | chr3.2:82419999-82420018 | None:intergenic | 15.0% |
| !!! | TTATCTAATGTGTTATTTAA+GGG | - | chr3.2:82420840-82420859 | None:intergenic | 15.0% |
| !!! | TTTATCTAATGTGTTATTTA+AGG | - | chr3.2:82420841-82420860 | None:intergenic | 15.0% |
| !!! | TTTATTTTATTTTTTTGAGC+CGG | + | chr3.2:82419745-82419764 | MS.gene055510:intron | 15.0% |
| !!! | TTTTCTCTTAACATATTATT+TGG | - | chr3.2:82420227-82420246 | None:intergenic | 15.0% |
| !! | AAGAAATTGAAATTGATACT+TGG | + | chr3.2:82420060-82420079 | MS.gene055510:CDS | 20.0% |
| !! | AGAAATTGAAATTGATACTT+GGG | + | chr3.2:82420061-82420080 | MS.gene055510:CDS | 20.0% |
| !!! | CTATTTTCTCTATGTTATTA+AGG | + | chr3.2:82420756-82420775 | MS.gene055510:intron | 20.0% |
| !!! | GGAAATGGAAAATATTTTTT+AGG | + | chr3.2:82419807-82419826 | MS.gene055510:intron | 20.0% |
| !!! | TAATCTTCTAGTACTTTTAT+TGG | - | chr3.2:82421624-82421643 | None:intergenic | 20.0% |
| !!! | TCTATTGACTGAATTATTAT+CGG | - | chr3.2:82421745-82421764 | None:intergenic | 20.0% |
| !!! | TTTTCATTTAGCAATTTTCT+AGG | - | chr3.2:82419413-82419432 | None:intergenic | 20.0% |
| ! | AAATATGATCAACACAAAGA+AGG | + | chr3.2:82419220-82419239 | MS.gene055510:CDS | 25.0% |
| ! | ATGTATAATTATGCAAAGGT+AGG | - | chr3.2:82419995-82420014 | None:intergenic | 25.0% |
| ! | GTGATTACAAATTGTAATCA+TGG | + | chr3.2:82419320-82419339 | MS.gene055510:CDS | 25.0% |
| ! | TGAAAATGATAAGTTTGACA+GGG | + | chr3.2:82420034-82420053 | MS.gene055510:intron | 25.0% |
| ! | TGTATAATTATGCAAAGGTA+GGG | - | chr3.2:82419994-82420013 | None:intergenic | 25.0% |
| ! | TTGAAAAATAAACTTGAACC+AGG | - | chr3.2:82420459-82420478 | None:intergenic | 25.0% |
| ! | TTGATTGTTACACATAATCA+CGG | + | chr3.2:82420540-82420559 | MS.gene055510:intron | 25.0% |
| !!! | ATCTCTTTAGTTTTTTGTTC+CGG | - | chr3.2:82421282-82421301 | None:intergenic | 25.0% |
| !!! | GTTTTAACTAACATAAAGCA+TGG | + | chr3.2:82419775-82419794 | MS.gene055510:intron | 25.0% |
| !!! | TTAGGCAGATTTTTGTTATT+AGG | + | chr3.2:82419489-82419508 | MS.gene055510:CDS | 25.0% |
| AAGTACAGAGATACAACAAA+TGG | + | chr3.2:82419941-82419960 | MS.gene055510:CDS | 30.0% | |
| AATTGAAATTGATACTTGGG+TGG | + | chr3.2:82420064-82420083 | MS.gene055510:CDS | 30.0% | |
| ACAATCAAGTTTCATAGAAG+TGG | - | chr3.2:82420528-82420547 | None:intergenic | 30.0% | |
| ACAATGTGAAATACATTGGA+TGG | + | chr3.2:82421413-82421432 | MS.gene055510:CDS | 30.0% | |
| ATCAACATAAGATGTTGATC+TGG | - | chr3.2:82421175-82421194 | None:intergenic | 30.0% | |
| ATGTTGCTCTTGTTACAAAT+GGG | + | chr3.2:82419441-82419460 | MS.gene055510:CDS | 30.0% | |
| CAAGCTTAACATTAGAGTTT+AGG | + | chr3.2:82421652-82421671 | MS.gene055510:CDS | 30.0% | |
| CATGAAACTTGATTCACATT+TGG | + | chr3.2:82419649-82419668 | MS.gene055510:intron | 30.0% | |
| CTGAAAATGATAAGTTTGAC+AGG | + | chr3.2:82420033-82420052 | MS.gene055510:intron | 30.0% | |
| CTGTAAGTTTATTTCATACC+TGG | + | chr3.2:82420438-82420457 | MS.gene055510:intron | 30.0% | |
| GAAAATGATAAGTTTGACAG+GGG | + | chr3.2:82420035-82420054 | MS.gene055510:intron | 30.0% | |
| GAACAATTGTGTTGTACTTT+CGG | + | chr3.2:82420632-82420651 | MS.gene055510:intron | 30.0% | |
| GGATGAGACATTTAACATAA+TGG | + | chr3.2:82421046-82421065 | MS.gene055510:intron | 30.0% | |
| GTGAACAATGTGAAATACAT+TGG | + | chr3.2:82421409-82421428 | MS.gene055510:CDS | 30.0% | |
| GTTAGTTAAAACAGCAAATC+CGG | - | chr3.2:82419767-82419786 | None:intergenic | 30.0% | |
| GTTATTAGGTCCTATGAAAT+TGG | + | chr3.2:82419503-82419522 | MS.gene055510:CDS | 30.0% | |
| TAAATCATGTTACAAGCTCT+GGG | + | chr3.2:82419839-82419858 | MS.gene055510:CDS | 30.0% | |
| TCAACATAAGATGTTGATCT+GGG | - | chr3.2:82421174-82421193 | None:intergenic | 30.0% | |
| ! | AAATCTTTTCTACGTCGAAA+TGG | + | chr3.2:82420719-82420738 | MS.gene055510:intron | 30.0% |
| ! | ATGAAAATCTTCGTTTGTTG+TGG | - | chr3.2:82419298-82419317 | None:intergenic | 30.0% |
| ! | CAACAAACGAAGATTTTCAT+TGG | + | chr3.2:82419298-82419317 | MS.gene055510:CDS | 30.0% |
| ! | TGGTAGTACTTTTCATAAAG+TGG | + | chr3.2:82419340-82419359 | MS.gene055510:CDS | 30.0% |
| !! | AAGTCAGATTTTGAGTAAGA+TGG | + | chr3.2:82421025-82421044 | MS.gene055510:intron | 30.0% |
| !! | ATACATTGGATGGATTTTAG+AGG | + | chr3.2:82421423-82421442 | MS.gene055510:CDS | 30.0% |
| !! | ATTATGTGCTGATTGATTGT+TGG | + | chr3.2:82421193-82421212 | MS.gene055510:intron | 30.0% |
| !! | TGAAAAGCAAAACTGATTTG+AGG | + | chr3.2:82420905-82420924 | MS.gene055510:intron | 30.0% |
| AAAATTCATGAGTGTCTCCA+TGG | - | chr3.2:82419546-82419565 | None:intergenic | 35.0% | |
| AAAGGTGAATGGTTTACTAG+TGG | + | chr3.2:82419379-82419398 | MS.gene055510:CDS | 35.0% | |
| AACACAACGATTGATCATGT+GGG | - | chr3.2:82419702-82419721 | None:intergenic | 35.0% | |
| AATTTGGCAAAAATCCGTTG+AGG | + | chr3.2:82421123-82421142 | MS.gene055510:intron | 35.0% | |
| ACTTCATTAAGGATTGAGCT+TGG | + | chr3.2:82421249-82421268 | MS.gene055510:intron | 35.0% | |
| AGAATGGAATGAGAAGAGAT+TGG | + | chr3.2:82420099-82420118 | MS.gene055510:CDS | 35.0% | |
| AGATCATAACTAAGGCAACA+AGG | + | chr3.2:82420147-82420166 | MS.gene055510:CDS | 35.0% | |
| AGCAAAAGGAAGTGACTAAT+TGG | - | chr3.2:82420501-82420520 | None:intergenic | 35.0% | |
| ATAGAAGTGGAGAAAGCAAA+AGG | - | chr3.2:82420515-82420534 | None:intergenic | 35.0% | |
| ATGTACACAATCGAATACGT+TGG | + | chr3.2:82421680-82421699 | MS.gene055510:CDS | 35.0% | |
| ATTTCACATTGTTCACATGC+TGG | - | chr3.2:82421405-82421424 | None:intergenic | 35.0% | |
| CAAGTTTCATGTTATACGTG+TGG | - | chr3.2:82419640-82419659 | None:intergenic | 35.0% | |
| CATAAAGCATGGATGAACTA+AGG | + | chr3.2:82419786-82419805 | MS.gene055510:intron | 35.0% | |
| CATAAAGTGGACACAGTTAA+TGG | + | chr3.2:82419353-82419372 | MS.gene055510:CDS | 35.0% | |
| CTAAATCATGTTACAAGCTC+TGG | + | chr3.2:82419838-82419857 | MS.gene055510:CDS | 35.0% | |
| CTTCATTAAGGATTGAGCTT+GGG | + | chr3.2:82421250-82421269 | MS.gene055510:intron | 35.0% | |
| CTTCGTAGTAGACTTCATTA+AGG | + | chr3.2:82421238-82421257 | MS.gene055510:intron | 35.0% | |
| GATGTTGCTCTTGTTACAAA+TGG | + | chr3.2:82419440-82419459 | MS.gene055510:CDS | 35.0% | |
| GCAATCTTGTGAAGGTAAAA+AGG | - | chr3.2:82420338-82420357 | None:intergenic | 35.0% | |
| GTTAATGGAACAAAGGTGAA+TGG | + | chr3.2:82419368-82419387 | MS.gene055510:CDS | 35.0% | |
| TCTATCTGGACCAATTTCAT+AGG | - | chr3.2:82419516-82419535 | None:intergenic | 35.0% | |
| TGAGAGAATACAATCTGGTT+TGG | + | chr3.2:82420415-82420434 | MS.gene055510:CDS | 35.0% | |
| TTCTCTATGTATTACAGCCA+AGG | + | chr3.2:82421359-82421378 | MS.gene055510:intron | 35.0% | |
| TTGAAGGAAGGTTTGTGTTT+AGG | + | chr3.2:82419471-82419490 | MS.gene055510:CDS | 35.0% | |
| ! | ACATTAGCTTACAAGGGAAT+TGG | + | chr3.2:82419174-82419193 | MS.gene055510:CDS | 35.0% |
| ! | AGCTCTTTTCTAACTTCTTC+AGG | - | chr3.2:82420311-82420330 | None:intergenic | 35.0% |
| ! | ATCAGCAACATTAGCTTACA+AGG | + | chr3.2:82419167-82419186 | MS.gene055510:CDS | 35.0% |
| ! | GACACTCATGAATTTTCTTC+AGG | + | chr3.2:82419550-82419569 | MS.gene055510:CDS | 35.0% |
| ! | TCAGCAACATTAGCTTACAA+GGG | + | chr3.2:82419168-82419187 | MS.gene055510:CDS | 35.0% |
| !! | AAAGCAAAACTGATTTGAGG+TGG | + | chr3.2:82420908-82420927 | MS.gene055510:intron | 35.0% |
| !! | ACAAATGGGAGATTTGTTGA+AGG | + | chr3.2:82419455-82419474 | MS.gene055510:CDS | 35.0% |
| ACTGCTGAGAGAATACAATC+TGG | + | chr3.2:82420410-82420429 | MS.gene055510:CDS | 40.0% | |
| AGATGTGTGTATTGCTGATC+GGG | - | chr3.2:82421771-82421790 | None:intergenic | 40.0% | |
| CAACCCAAATGAGTTTCCTT+AGG | - | chr3.2:82419903-82419922 | None:intergenic | 40.0% | |
| CACCAAGGAGATCATAACTA+AGG | + | chr3.2:82420139-82420158 | MS.gene055510:CDS | 40.0% | |
| CAGATGTGTGTATTGCTGAT+CGG | - | chr3.2:82421772-82421791 | None:intergenic | 40.0% | |
| CCACGAAGATAATCTCTCAA+CGG | - | chr3.2:82421149-82421168 | None:intergenic | 40.0% | |
| GAACACAACGATTGATCATG+TGG | - | chr3.2:82419703-82419722 | None:intergenic | 40.0% | |
| GAATGTGAGCAATGCAAAGA+AGG | + | chr3.2:82419196-82419215 | MS.gene055510:CDS | 40.0% | |
| GAGCCTAAGGAAACTCATTT+GGG | + | chr3.2:82419897-82419916 | MS.gene055510:CDS | 40.0% | |
| GATCAACACAAAGAAGGCTT+TGG | + | chr3.2:82419226-82419245 | MS.gene055510:CDS | 40.0% | |
| GCATGGATGAACTAAGGAAA+TGG | + | chr3.2:82419792-82419811 | MS.gene055510:intron | 40.0% | |
| GGACACAGTTAATGGAACAA+AGG | + | chr3.2:82419361-82419380 | MS.gene055510:CDS | 40.0% | |
| TAGCTACAGCAATCTTGTGA+AGG | - | chr3.2:82420346-82420365 | None:intergenic | 40.0% | |
| TCACCAATCACTCTTTCTGT+TGG | - | chr3.2:82421720-82421739 | None:intergenic | 40.0% | |
| TCTATGTATTACAGCCAAGG+TGG | + | chr3.2:82421362-82421381 | MS.gene055510:intron | 40.0% | |
| TCTTTCTGTTGGACATGTCA+AGG | - | chr3.2:82421709-82421728 | None:intergenic | 40.0% | |
| TGAGCCTAAGGAAACTCATT+TGG | + | chr3.2:82419896-82419915 | MS.gene055510:CDS | 40.0% | |
| TGCCTTAGTTATGATCTCCT+TGG | - | chr3.2:82420144-82420163 | None:intergenic | 40.0% | |
| TGTCCAACAGAAAGAGTGAT+TGG | + | chr3.2:82421714-82421733 | MS.gene055510:CDS | 40.0% | |
| TTGTTCGAGCTAGATCTGAA+TGG | + | chr3.2:82421820-82421839 | MS.gene055510:CDS | 40.0% | |
| ! | GGCAGAGTTTCTAGAGAATT+TGG | + | chr3.2:82421107-82421126 | MS.gene055510:intron | 40.0% |
| !! | ATGGGAGATTTGTTGAAGGA+AGG | + | chr3.2:82419459-82419478 | MS.gene055510:CDS | 40.0% |
| AATGTGTACGTTTCTCCTGG+TGG | + | chr3.2:82421069-82421088 | MS.gene055510:intron | 45.0% | |
| ACATCCATGTCATTCCACCT+TGG | - | chr3.2:82421379-82421398 | None:intergenic | 45.0% | |
| ACTGTGTTTGATGCAGCACA+TGG | + | chr3.2:82420246-82420265 | MS.gene055510:intron | 45.0% | |
| CCGTTGAGAGATTATCTTCG+TGG | + | chr3.2:82421146-82421165 | MS.gene055510:intron | 45.0% | |
| CTGTGTTTGATGCAGCACAT+GGG | + | chr3.2:82420247-82420266 | MS.gene055510:intron | 45.0% | |
| GAATGGTTTACTAGTGGCAG+AGG | + | chr3.2:82419385-82419404 | MS.gene055510:CDS | 45.0% | |
| GTGTTTGCATGTACAACACC+CGG | - | chr3.2:82420995-82421014 | None:intergenic | 45.0% | |
| TAATCTCTCAACGGCCTCAA+CGG | - | chr3.2:82421140-82421159 | None:intergenic | 45.0% | |
| TCCAGATAGAACTGCTACCA+TGG | + | chr3.2:82419526-82419545 | MS.gene055510:CDS | 45.0% | |
| TCCATGGTAGCAGTTCTATC+TGG | - | chr3.2:82419530-82419549 | None:intergenic | 45.0% | |
| TGGAATGTGTACGTTTCTCC+TGG | + | chr3.2:82421066-82421085 | MS.gene055510:intron | 45.0% | |
| TGTTTGCATGTACAACACCC+GGG | - | chr3.2:82420994-82421013 | None:intergenic | 45.0% | |
| TTAAGGATTGAGCTTGGGTC+TGG | + | chr3.2:82421255-82421274 | MS.gene055510:intron | 45.0% | |
| ! | CAACACAAAGAAGGCTTTGG+AGG | + | chr3.2:82419229-82419248 | MS.gene055510:CDS | 45.0% |
| ! | TATAAAAGTACACCGCCACC+AGG | - | chr3.2:82421087-82421106 | None:intergenic | 45.0% |
| !! | CATGTTACAAGCTCTGGGAT+AGG | + | chr3.2:82419844-82419863 | MS.gene055510:CDS | 45.0% |
| !! | GAGTTGATGAAACGCAACTG+AGG | + | chr3.2:82420948-82420967 | MS.gene055510:intron | 45.0% |
| !!! | TGGTGGCGGTGTACTTTTAT+AGG | + | chr3.2:82421086-82421105 | MS.gene055510:intron | 45.0% |
| AATCCGAGATCGTTGCACCA+AGG | + | chr3.2:82420124-82420143 | MS.gene055510:CDS | 50.0% | |
| ACAGCCAAGGTGGAATGACA+TGG | + | chr3.2:82421372-82421391 | MS.gene055510:intron | 50.0% | |
| GTGGATGCAGCAGGAAAGAA+TGG | + | chr3.2:82420083-82420102 | MS.gene055510:CDS | 50.0% | |
| TGAAACGCAACTGAGGACGA+TGG | + | chr3.2:82420955-82420974 | MS.gene055510:intron | 50.0% | |
| ! | GGGATAGGAGGAGATGGATT+TGG | + | chr3.2:82419859-82419878 | MS.gene055510:CDS | 50.0% |
| ! | TCTCCTTGGTGCAACGATCT+CGG | - | chr3.2:82420130-82420149 | None:intergenic | 50.0% |
| !! | GGTGGACTGAGATCGACAAT+CGG | + | chr3.2:82420926-82420945 | MS.gene055510:intron | 50.0% |
| !! | GTTACAAGCTCTGGGATAGG+AGG | + | chr3.2:82419847-82419866 | MS.gene055510:CDS | 50.0% |
| AGGACGATGGCTGAGCTCTT+CGG | + | chr3.2:82420968-82420987 | MS.gene055510:intron | 55.0% | |
| CAACTCGCGAGATGAGCCTA+AGG | + | chr3.2:82419884-82419903 | MS.gene055510:CDS | 55.0% | |
| GATACTTGGGTGGATGCAGC+AGG | + | chr3.2:82420074-82420093 | MS.gene055510:CDS | 55.0% | |
| GATTGAGCTTGGGTCTGGTC+CGG | + | chr3.2:82421260-82421279 | MS.gene055510:intron | 55.0% | |
| GTGTACGTTTCTCCTGGTGG+CGG | + | chr3.2:82421072-82421091 | MS.gene055510:intron | 55.0% | |
| !! | AGCTCTGGGATAGGAGGAGA+TGG | + | chr3.2:82419853-82419872 | MS.gene055510:CDS | 55.0% |
| ATGGCTGAGCTCTTCGGCCC+GGG | + | chr3.2:82420974-82420993 | MS.gene055510:intron | 65.0% | |
| GATGGCTGAGCTCTTCGGCC+CGG | + | chr3.2:82420973-82420992 | MS.gene055510:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 82419158 | 82421866 | 82419158 | ID=MS.gene055510 |
| chr3.2 | mRNA | 82419158 | 82421866 | 82419158 | ID=MS.gene055510.t1;Parent=MS.gene055510 |
| chr3.2 | exon | 82419158 | 82419571 | 82419158 | ID=MS.gene055510.t1.exon1;Parent=MS.gene055510.t1 |
| chr3.2 | CDS | 82419158 | 82419571 | 82419158 | ID=cds.MS.gene055510.t1;Parent=MS.gene055510.t1 |
| chr3.2 | exon | 82419829 | 82419962 | 82419829 | ID=MS.gene055510.t1.exon2;Parent=MS.gene055510.t1 |
| chr3.2 | CDS | 82419829 | 82419962 | 82419829 | ID=cds.MS.gene055510.t1;Parent=MS.gene055510.t1 |
| chr3.2 | exon | 82420055 | 82420168 | 82420055 | ID=MS.gene055510.t1.exon3;Parent=MS.gene055510.t1 |
| chr3.2 | CDS | 82420055 | 82420168 | 82420055 | ID=cds.MS.gene055510.t1;Parent=MS.gene055510.t1 |
| chr3.2 | exon | 82420262 | 82420439 | 82420262 | ID=MS.gene055510.t1.exon4;Parent=MS.gene055510.t1 |
| chr3.2 | CDS | 82420262 | 82420439 | 82420262 | ID=cds.MS.gene055510.t1;Parent=MS.gene055510.t1 |
| chr3.2 | exon | 82421376 | 82421444 | 82421376 | ID=MS.gene055510.t1.exon5;Parent=MS.gene055510.t1 |
| chr3.2 | CDS | 82421376 | 82421444 | 82421376 | ID=cds.MS.gene055510.t1;Parent=MS.gene055510.t1 |
| chr3.2 | exon | 82421615 | 82421866 | 82421615 | ID=MS.gene055510.t1.exon6;Parent=MS.gene055510.t1 |
| chr3.2 | CDS | 82421615 | 82421866 | 82421615 | ID=cds.MS.gene055510.t1;Parent=MS.gene055510.t1 |
| Gene Sequence |
| Protein sequence |
