Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062362.t1 | XP_003615315.2 | 88.4 | 423 | 18 | 1 | 1 | 423 | 274 | 665 | 2.90E-207 | 731.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062362.t1 | Q05609 | 38.5 | 301 | 157 | 7 | 1 | 291 | 217 | 499 | 3.7e-49 | 197.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062362.t1 | G7JYF3 | 88.4 | 423 | 18 | 1 | 1 | 423 | 274 | 665 | 2.1e-207 | 731.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049976 | MS.gene062362 | 0.895174 | 1.23E-75 | -1.69E-46 |
| MS.gene049977 | MS.gene062362 | 0.840942 | 6.42E-58 | -1.69E-46 |
| MS.gene052463 | MS.gene062362 | 0.800966 | 1.12E-48 | -1.69E-46 |
| MS.gene053620 | MS.gene062362 | 0.820559 | 6.44E-53 | -1.69E-46 |
| MS.gene056677 | MS.gene062362 | 0.80682 | 6.83E-50 | -1.69E-46 |
| MS.gene057919 | MS.gene062362 | 0.803738 | 3.02E-49 | -1.69E-46 |
| MS.gene058289 | MS.gene062362 | 0.800643 | 1.31E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062362.t1 | MTR_5g066490 | 88.416 | 423 | 18 | 1 | 1 | 423 | 274 | 665 | 0.0 | 759 |
| MS.gene062362.t1 | MTR_3g100090 | 64.465 | 439 | 136 | 8 | 1 | 423 | 238 | 672 | 0.0 | 549 |
| MS.gene062362.t1 | MTR_5g030880 | 67.066 | 167 | 19 | 1 | 257 | 423 | 52 | 182 | 7.07e-67 | 215 |
| MS.gene062362.t1 | MTR_1g061190 | 34.325 | 437 | 223 | 11 | 1 | 423 | 188 | 574 | 5.14e-64 | 220 |
| MS.gene062362.t1 | MTR_1g050690 | 44.796 | 221 | 115 | 4 | 1 | 220 | 96 | 310 | 1.74e-51 | 184 |
| MS.gene062362.t1 | MTR_7g064210 | 53.939 | 165 | 14 | 2 | 259 | 423 | 227 | 329 | 6.38e-40 | 147 |
| MS.gene062362.t1 | MTR_2g022940 | 62.385 | 109 | 10 | 1 | 251 | 359 | 55 | 132 | 3.82e-31 | 120 |
| MS.gene062362.t1 | MTR_8g107000 | 35.683 | 227 | 123 | 7 | 4 | 223 | 146 | 356 | 5.21e-31 | 126 |
| MS.gene062362.t1 | MTR_6g079540 | 37.118 | 229 | 117 | 8 | 4 | 223 | 155 | 365 | 9.91e-31 | 125 |
| MS.gene062362.t1 | MTR_1g016300 | 37.073 | 205 | 107 | 8 | 5 | 201 | 143 | 333 | 3.86e-29 | 120 |
| MS.gene062362.t1 | MTR_1g081790 | 36.098 | 205 | 113 | 7 | 4 | 205 | 153 | 342 | 4.89e-29 | 120 |
| MS.gene062362.t1 | MTR_1g081790 | 36.098 | 205 | 113 | 7 | 4 | 205 | 153 | 342 | 6.67e-29 | 120 |
| MS.gene062362.t1 | MTR_1g016300 | 37.073 | 205 | 107 | 8 | 5 | 201 | 143 | 333 | 8.04e-29 | 119 |
| MS.gene062362.t1 | MTR_6g079540 | 40.000 | 125 | 66 | 4 | 100 | 223 | 1 | 117 | 1.42e-18 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062362.t1 | AT4G24480 | 48.961 | 433 | 180 | 6 | 1 | 423 | 287 | 688 | 2.35e-134 | 409 |
| MS.gene062362.t1 | AT4G24480 | 48.961 | 433 | 180 | 5 | 1 | 423 | 287 | 688 | 2.37e-134 | 409 |
| MS.gene062362.t1 | AT4G24480 | 48.961 | 433 | 180 | 5 | 1 | 423 | 287 | 688 | 2.96e-134 | 409 |
| MS.gene062362.t1 | AT5G03730 | 38.538 | 301 | 157 | 8 | 1 | 291 | 217 | 499 | 1.89e-55 | 196 |
| MS.gene062362.t1 | AT5G03730 | 38.538 | 301 | 157 | 8 | 1 | 291 | 217 | 499 | 1.89e-55 | 196 |
| MS.gene062362.t1 | AT1G73660 | 36.792 | 212 | 112 | 7 | 4 | 207 | 191 | 388 | 1.20e-29 | 122 |
| MS.gene062362.t1 | AT1G18160 | 36.916 | 214 | 109 | 7 | 4 | 207 | 167 | 364 | 2.05e-27 | 115 |
| MS.gene062362.t1 | AT1G18160 | 36.916 | 214 | 109 | 7 | 4 | 207 | 167 | 364 | 2.23e-27 | 115 |
| MS.gene062362.t1 | AT5G11850 | 33.981 | 206 | 114 | 7 | 4 | 201 | 152 | 343 | 9.16e-27 | 113 |
| MS.gene062362.t1 | AT1G08720 | 30.732 | 205 | 126 | 6 | 3 | 205 | 140 | 330 | 1.82e-23 | 103 |
| MS.gene062362.t1 | AT1G08720 | 30.732 | 205 | 126 | 6 | 3 | 205 | 140 | 330 | 1.95e-23 | 103 |
Find 100 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTCAAGATTCACATATTT+TGG | 0.083444 | 5.4:-51809216 | None:intergenic |
| AAAACTTGTTGCTATCTTTA+TGG | 0.109717 | 5.4:+51807256 | MS.gene062362:CDS |
| AGCAAATCAGTTTCTTTATT+TGG | 0.126811 | 5.4:-51808856 | None:intergenic |
| TCTCATTGTAAGAAATTTCT+TGG | 0.257410 | 5.4:-51809101 | None:intergenic |
| GCTTCAGTTGATAAAACTTC+TGG | 0.263541 | 5.4:+51808904 | MS.gene062362:CDS |
| TCTAACAATCAACTGTATTC+AGG | 0.283652 | 5.4:+51808372 | MS.gene062362:CDS |
| AAACTTGTTGCTATCTTTAT+GGG | 0.295581 | 5.4:+51807257 | MS.gene062362:CDS |
| GGGCCAGATTCCTCAATTAA+TGG | 0.297580 | 5.4:+51808234 | MS.gene062362:CDS |
| GAACCACCTGTAATTCCTTT+TGG | 0.314447 | 5.4:+51808934 | MS.gene062362:CDS |
| ACAACTCTTGTGCTTTATCT+TGG | 0.324215 | 5.4:-51807190 | None:intergenic |
| TTCAAGCCAAAAGGAATTAC+AGG | 0.337567 | 5.4:-51808940 | None:intergenic |
| TGAACCCAATGAGAGTTCTT+TGG | 0.343520 | 5.4:+51807121 | MS.gene062362:CDS |
| CTCAAATGAGAAATTTGAAA+TGG | 0.348440 | 5.4:-51808282 | None:intergenic |
| GAATTTCCTTCCTACATTGA+TGG | 0.349552 | 5.4:+51807085 | MS.gene062362:CDS |
| TGTAATAATGCTTCAGAGGC+TGG | 0.356384 | 5.4:-51809042 | None:intergenic |
| CAGAGATTGGCGGATTATAT+AGG | 0.358172 | 5.4:+51807815 | MS.gene062362:intron |
| GCCGCATTGCTCGAGGTTGC+AGG | 0.362188 | 5.4:+51807846 | MS.gene062362:CDS |
| CTACTTGTTCCTGCTTTGAC+TGG | 0.365162 | 5.4:-51809158 | None:intergenic |
| GGGGAACCAGGAAATATTAC+TGG | 0.369479 | 5.4:+51808213 | MS.gene062362:CDS |
| AAGGGAAGTTCAGTGGTAAA+TGG | 0.375926 | 5.4:+51809132 | MS.gene062362:CDS |
| AGTATGTTGTTGACCTTGTT+GGG | 0.376604 | 5.4:+51808193 | MS.gene062362:CDS |
| TTACATGACATTCCATTTGT+TGG | 0.377586 | 5.4:+51809060 | MS.gene062362:CDS |
| CACTTCCAAAGAACTCTCAT+TGG | 0.396018 | 5.4:-51807126 | None:intergenic |
| TGCAGATCCCCTTGCTCCAC+AGG | 0.400825 | 5.4:-51807505 | None:intergenic |
| TCTGGCCCAGTAATATTTCC+TGG | 0.407911 | 5.4:-51808219 | None:intergenic |
| ACTGAATCTTTACCAACAAA+TGG | 0.415679 | 5.4:-51809072 | None:intergenic |
| GTTCCTTCCCTGTGGAGCAA+GGG | 0.432823 | 5.4:+51807497 | MS.gene062362:CDS |
| GCTCCATTAATTGAGGAATC+TGG | 0.433747 | 5.4:-51808237 | None:intergenic |
| CGACTTCATAACCATGGTGC+TGG | 0.441942 | 5.4:+51809186 | MS.gene062362:CDS |
| TGGACTGGCTTGAGATATCA+TGG | 0.445535 | 5.4:+51809250 | MS.gene062362:CDS |
| TTTGATCTTCACAAGAATAG+AGG | 0.450406 | 5.4:-51807891 | None:intergenic |
| GCATCGCGCAATTCTCTTCA+AGG | 0.451312 | 5.4:+51807618 | MS.gene062362:CDS |
| AGATGGTTAGTAAGCGGTTG+AGG | 0.457571 | 5.4:+51807539 | MS.gene062362:CDS |
| GAGTATGTTGTTGACCTTGT+TGG | 0.468190 | 5.4:+51808192 | MS.gene062362:CDS |
| CCCGTGGACAAACTACCAAC+TGG | 0.473966 | 5.4:-51807586 | None:intergenic |
| TCCAGTTGGTAGTTTGTCCA+CGG | 0.479090 | 5.4:+51807585 | MS.gene062362:CDS |
| GGTTCCTTCCCTGTGGAGCA+AGG | 0.481640 | 5.4:+51807496 | MS.gene062362:CDS |
| ACTTCCAAAGAACTCTCATT+GGG | 0.483065 | 5.4:-51807125 | None:intergenic |
| TGTAATGACATGGAGGAAGA+AGG | 0.484330 | 5.4:+51807062 | MS.gene062362:CDS |
| TTCTGCTTCTGAGAATGCCT+TGG | 0.485336 | 5.4:+51807214 | MS.gene062362:CDS |
| AGGTTGCAGGTACTGTGCTT+CGG | 0.491574 | 5.4:+51807859 | MS.gene062362:CDS |
| TACAATGAGATCATTGCAAA+GGG | 0.494339 | 5.4:+51809114 | MS.gene062362:CDS |
| GTTGACCTTGTTGGGGAACC+AGG | 0.495325 | 5.4:+51808201 | MS.gene062362:CDS |
| ATCAAAGAACGCATTGGTGC+TGG | 0.498755 | 5.4:+51809285 | MS.gene062362:CDS |
| GCTTTAAGCGCCATCAATGT+AGG | 0.504010 | 5.4:-51807095 | None:intergenic |
| TTCCTTCCCTGTGGAGCAAG+GGG | 0.509142 | 5.4:+51807498 | MS.gene062362:CDS |
| CACATATGCTCCATTAATTG+AGG | 0.521191 | 5.4:-51808244 | None:intergenic |
| GACTTCATAACCATGGTGCT+GGG | 0.522838 | 5.4:+51809187 | MS.gene062362:CDS |
| TCGCTGCCTTTCAAGCCAAA+AGG | 0.530484 | 5.4:-51808949 | None:intergenic |
| GTAATAATGCTTCAGAGGCT+GGG | 0.531732 | 5.4:-51809041 | None:intergenic |
| CAGTGTGTTGTGCTTCCAGT+TGG | 0.532963 | 5.4:+51807571 | MS.gene062362:CDS |
| TTACAATGAGATCATTGCAA+AGG | 0.535482 | 5.4:+51809113 | MS.gene062362:CDS |
| TTGGTGCTCGTTGAAAAGCT+TGG | 0.535539 | 5.4:+51807233 | MS.gene062362:CDS |
| GTAATGACATGGAGGAAGAA+GGG | 0.538488 | 5.4:+51807063 | MS.gene062362:CDS |
| TTGTGAAGATCAAAGATGAC+AGG | 0.548212 | 5.4:+51807900 | MS.gene062362:CDS |
| AGCCAGTCCATTGCTAGTGA+TGG | 0.551807 | 5.4:-51809237 | None:intergenic |
| AAATGGTATCCAGTCAAAGC+AGG | 0.553596 | 5.4:+51809149 | MS.gene062362:CDS |
| CCAGTTGGTAGTTTGTCCAC+GGG | 0.554032 | 5.4:+51807586 | MS.gene062362:CDS |
| TACATTGATGGCGCTTAAAG+CGG | 0.556772 | 5.4:+51807097 | MS.gene062362:CDS |
| TTTGTTGATGCAGAGATTGG+CGG | 0.559377 | 5.4:+51807805 | MS.gene062362:intron |
| TCTTGAACCATCACTAGCAA+TGG | 0.564083 | 5.4:+51809230 | MS.gene062362:CDS |
| TGAGAAATTTGAAATGGAGA+AGG | 0.565947 | 5.4:-51808276 | None:intergenic |
| AACCATCACTAGCAATGGAC+TGG | 0.566572 | 5.4:+51809235 | MS.gene062362:CDS |
| TTGCCGTGCCGCATTGCTCG+AGG | 0.576314 | 5.4:+51807839 | MS.gene062362:CDS |
| GTATGTTGTTGACCTTGTTG+GGG | 0.577494 | 5.4:+51808194 | MS.gene062362:CDS |
| TTACACATCACCCACAAGTA+CGG | 0.578733 | 5.4:-51807044 | None:intergenic |
| AACTTGTTGCTATCTTTATG+GGG | 0.581303 | 5.4:+51807258 | MS.gene062362:CDS |
| TACACTGACAAGATTGCGGA+TGG | 0.584485 | 5.4:+51806996 | MS.gene062362:CDS |
| ATCCCCTTGCTCCACAGGGA+AGG | 0.586648 | 5.4:-51807500 | None:intergenic |
| GTCATGTAATAATGCTTCAG+AGG | 0.593398 | 5.4:-51809046 | None:intergenic |
| CAACCTCGAGCAATGCGGCA+CGG | 0.594862 | 5.4:-51807842 | None:intergenic |
| TATTTCCTGGTTCCCCAACA+AGG | 0.595976 | 5.4:-51808206 | None:intergenic |
| TGATTAAAACTTATAACTTG+AGG | 0.596824 | 5.4:-51808342 | None:intergenic |
| CTGCGGATCAAAGAACGCAT+TGG | 0.597029 | 5.4:+51809279 | MS.gene062362:CDS |
| GTTTGTCCACGGGACTATGT+AGG | 0.597838 | 5.4:+51807596 | MS.gene062362:CDS |
| AAGCCAAAAGGAATTACAGG+TGG | 0.611755 | 5.4:-51808937 | None:intergenic |
| GCAGATCCCCTTGCTCCACA+GGG | 0.614608 | 5.4:-51807504 | None:intergenic |
| TGGGAATGAATCCGTACTTG+TGG | 0.616564 | 5.4:+51807033 | MS.gene062362:CDS |
| GAAAATCGACTTCATAACCA+TGG | 0.619913 | 5.4:+51809180 | MS.gene062362:CDS |
| GATGCTGCATCATCCACGTA+GGG | 0.620434 | 5.4:-51808318 | None:intergenic |
| AAGATGACAGGCAACTGTCA+AGG | 0.620877 | 5.4:+51807912 | MS.gene062362:CDS |
| TCAGTTGATAAAACTTCTGG+AGG | 0.627845 | 5.4:+51808907 | MS.gene062362:CDS |
| GGGAACCAGGAAATATTACT+GGG | 0.628936 | 5.4:+51808214 | MS.gene062362:CDS |
| CATTGCAAAGGGAAGTTCAG+TGG | 0.632388 | 5.4:+51809125 | MS.gene062362:CDS |
| AGATATCATGGGATGAGCTG+CGG | 0.633760 | 5.4:+51809262 | MS.gene062362:CDS |
| TAAGCGCCATCAATGTAGGA+AGG | 0.635856 | 5.4:-51807091 | None:intergenic |
| ACTTCATAACCATGGTGCTG+GGG | 0.643872 | 5.4:+51809188 | MS.gene062362:CDS |
| GGTGGAAGATGGTTAGTAAG+CGG | 0.644238 | 5.4:+51807533 | MS.gene062362:CDS |
| GGGAATGAATCCGTACTTGT+GGG | 0.644522 | 5.4:+51807034 | MS.gene062362:CDS |
| GATACTTATTGATAGACGCG+AGG | 0.660358 | 5.4:+51807148 | MS.gene062362:CDS |
| AAAATCTCAATCGCCCTACG+TGG | 0.662864 | 5.4:+51808305 | MS.gene062362:CDS |
| TTGGAATATCCCCAGCACCA+TGG | 0.668952 | 5.4:-51809197 | None:intergenic |
| GTCGTACACTGACAAGATTG+CGG | 0.673919 | 5.4:+51806992 | MS.gene062362:CDS |
| AGATGCTGCATCATCCACGT+AGG | 0.674401 | 5.4:-51808319 | None:intergenic |
| GAAAAGGGGTTCCTTCCCTG+TGG | 0.675715 | 5.4:+51807489 | MS.gene062362:intron |
| GTGGGTGATGTGTAATGACA+TGG | 0.677597 | 5.4:+51807052 | MS.gene062362:CDS |
| GGACTGGCTTGAGATATCAT+GGG | 0.699073 | 5.4:+51809251 | MS.gene062362:CDS |
| GGTGATGTGTAATGACATGG+AGG | 0.730059 | 5.4:+51807055 | MS.gene062362:CDS |
| ACCTGCAACCTCGAGCAATG+CGG | 0.741416 | 5.4:-51807847 | None:intergenic |
| GCGATGCCTACATAGTCCCG+TGG | 0.771492 | 5.4:-51807602 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAACAAATAAACTTGA+TGG | - | chr5.4:51807974-51807993 | None:intergenic | 15.0% |
| !! | AATTAACAAATAAACTTGAT+GGG | - | chr5.4:51807973-51807992 | None:intergenic | 15.0% |
| !! | ATGGTTTATTTATATCTATT+TGG | + | chr5.4:51807672-51807691 | MS.gene062362:intron | 15.0% |
| !! | ATTTATACCCTACTATAAAT+AGG | - | chr5.4:51808523-51808542 | None:intergenic | 20.0% |
| !! | CATAATAAGAACAATAATCA+TGG | + | chr5.4:51807308-51807327 | MS.gene062362:intron | 20.0% |
| !! | TGATTAAAACTTATAACTTG+AGG | - | chr5.4:51808345-51808364 | None:intergenic | 20.0% |
| !! | TTAGATTGCTCATATATATT+TGG | + | chr5.4:51808069-51808088 | MS.gene062362:intron | 20.0% |
| !! | TTTATACCCTACTATAAATA+GGG | - | chr5.4:51808522-51808541 | None:intergenic | 20.0% |
| !!! | AATCGATTTATTTATGTGTT+TGG | + | chr5.4:51807454-51807473 | MS.gene062362:intron | 20.0% |
| !!! | GATGGATTTTATAACATATT+GGG | + | chr5.4:51807014-51807033 | MS.gene062362:CDS | 20.0% |
| !!! | TTGTTAATTTTATGTTTTCC+TGG | + | chr5.4:51807984-51808003 | MS.gene062362:intron | 20.0% |
| ! | AGCAAATCAGTTTCTTTATT+TGG | - | chr5.4:51808859-51808878 | None:intergenic | 25.0% |
| ! | ATTTGAACCCTATTTATAGT+AGG | + | chr5.4:51808512-51808531 | MS.gene062362:intron | 25.0% |
| ! | ATTTGTTTAATTCCTTTGTC+AGG | + | chr5.4:51808169-51808188 | MS.gene062362:intron | 25.0% |
| ! | CTCAAATGAGAAATTTGAAA+TGG | - | chr5.4:51808285-51808304 | None:intergenic | 25.0% |
| ! | GAATAACAATCAATATCTCA+GGG | - | chr5.4:51807771-51807790 | None:intergenic | 25.0% |
| ! | GTAAATACCTATCATATAAG+CGG | + | chr5.4:51807724-51807743 | MS.gene062362:intron | 25.0% |
| ! | TAAAACAGTTGGAAGTTAAA+TGG | - | chr5.4:51808421-51808440 | None:intergenic | 25.0% |
| ! | TCTCATTGTAAGAAATTTCT+TGG | - | chr5.4:51809104-51809123 | None:intergenic | 25.0% |
| ! | TGAATAACAATCAATATCTC+AGG | - | chr5.4:51807772-51807791 | None:intergenic | 25.0% |
| ! | TTTGAACCCTATTTATAGTA+GGG | + | chr5.4:51808513-51808532 | MS.gene062362:intron | 25.0% |
| ! | TTTGTTACATGGTGATTATT+TGG | + | chr5.4:51807649-51807668 | MS.gene062362:intron | 25.0% |
| ! | TTTGTTTAATTCCTTTGTCA+GGG | + | chr5.4:51808170-51808189 | MS.gene062362:intron | 25.0% |
| !! | AGGTAAATCTTTTTGTTACA+TGG | + | chr5.4:51807638-51807657 | MS.gene062362:intron | 25.0% |
| !! | ATACTCCATATGAAACTTTT+GGG | - | chr5.4:51808692-51808711 | None:intergenic | 25.0% |
| !! | GCTCATATATATTTGGATTT+TGG | + | chr5.4:51808076-51808095 | MS.gene062362:intron | 25.0% |
| !! | TATTGATTGTTATTCACTGT+TGG | + | chr5.4:51807776-51807795 | MS.gene062362:intron | 25.0% |
| !! | TGATGCATTTTTGTTCATTT+AGG | + | chr5.4:51808479-51808498 | MS.gene062362:intron | 25.0% |
| !!! | AAAACTTGTTGCTATCTTTA+TGG | + | chr5.4:51807256-51807275 | MS.gene062362:CDS | 25.0% |
| !!! | AAACTTGTTGCTATCTTTAT+GGG | + | chr5.4:51807257-51807276 | MS.gene062362:CDS | 25.0% |
| !!! | AATAGTAGTTCTAAAACAGT+TGG | - | chr5.4:51808432-51808451 | None:intergenic | 25.0% |
| !!! | GGATGGATTTTATAACATAT+TGG | + | chr5.4:51807013-51807032 | MS.gene062362:CDS | 25.0% |
| !!! | GTATAAATAGTTTTACCAAG+TGG | + | chr5.4:51808535-51808554 | MS.gene062362:intron | 25.0% |
| ACTGAATCTTTACCAACAAA+TGG | - | chr5.4:51809075-51809094 | None:intergenic | 30.0% | |
| CAAAAGTTTCATATGGAGTA+TGG | + | chr5.4:51808691-51808710 | MS.gene062362:intron | 30.0% | |
| GTACTGTATGATCTAAGAAT+AGG | - | chr5.4:51808742-51808761 | None:intergenic | 30.0% | |
| TACAATGAGATCATTGCAAA+GGG | + | chr5.4:51809114-51809133 | MS.gene062362:CDS | 30.0% | |
| TAGACAATTGTGATCTAGAT+CGG | + | chr5.4:51807359-51807378 | MS.gene062362:intron | 30.0% | |
| TCTAACAATCAACTGTATTC+AGG | + | chr5.4:51808372-51808391 | MS.gene062362:CDS | 30.0% | |
| TTACAATGAGATCATTGCAA+AGG | + | chr5.4:51809113-51809132 | MS.gene062362:CDS | 30.0% | |
| TTACATGACATTCCATTTGT+TGG | + | chr5.4:51809060-51809079 | MS.gene062362:CDS | 30.0% | |
| TTACATGGTGATTATTTGGA+TGG | + | chr5.4:51807653-51807672 | MS.gene062362:intron | 30.0% | |
| TTTGATCTTCACAAGAATAG+AGG | - | chr5.4:51807894-51807913 | None:intergenic | 30.0% | |
| ! | CATACTCCATATGAAACTTT+TGG | - | chr5.4:51808693-51808712 | None:intergenic | 30.0% |
| ! | GGTTCAAGATTCACATATTT+TGG | - | chr5.4:51809219-51809238 | None:intergenic | 30.0% |
| ! | TACTCCATATGAAACTTTTG+GGG | - | chr5.4:51808691-51808710 | None:intergenic | 30.0% |
| ! | TGAGAAATTTGAAATGGAGA+AGG | - | chr5.4:51808279-51808298 | None:intergenic | 30.0% |
| !! | AACTTGTTGCTATCTTTATG+GGG | + | chr5.4:51807258-51807277 | MS.gene062362:CDS | 30.0% |
| !! | TTTATTTATGTGTTTGGTGC+TGG | + | chr5.4:51807460-51807479 | MS.gene062362:intron | 30.0% |
| AATACCTATCATATAAGCGG+AGG | + | chr5.4:51807727-51807746 | MS.gene062362:intron | 35.0% | |
| ACAACTCTTGTGCTTTATCT+TGG | - | chr5.4:51807193-51807212 | None:intergenic | 35.0% | |
| ACTTCCAAAGAACTCTCATT+GGG | - | chr5.4:51807128-51807147 | None:intergenic | 35.0% | |
| AGACAATTGTGATCTAGATC+GGG | + | chr5.4:51807360-51807379 | MS.gene062362:intron | 35.0% | |
| AGATCACAATTGTCTAGATC+AGG | - | chr5.4:51807355-51807374 | None:intergenic | 35.0% | |
| AGTATGTTGTTGACCTTGTT+GGG | + | chr5.4:51808193-51808212 | MS.gene062362:CDS | 35.0% | |
| ATACCTATCATATAAGCGGA+GGG | + | chr5.4:51807728-51807747 | MS.gene062362:intron | 35.0% | |
| ATTGCCCCAAAAGTTTCATA+TGG | + | chr5.4:51808684-51808703 | MS.gene062362:intron | 35.0% | |
| CAACTGTATTCAGGTATGTT+GGG | + | chr5.4:51808381-51808400 | MS.gene062362:intron | 35.0% | |
| CACATATGCTCCATTAATTG+AGG | - | chr5.4:51808247-51808266 | None:intergenic | 35.0% | |
| GAATTTCCTTCCTACATTGA+TGG | + | chr5.4:51807085-51807104 | MS.gene062362:CDS | 35.0% | |
| GATCACAATTGTCTAGATCA+GGG | - | chr5.4:51807354-51807373 | None:intergenic | 35.0% | |
| GCAATGGAAAATGAAACATG+AGG | - | chr5.4:51808669-51808688 | None:intergenic | 35.0% | |
| GTCATGTAATAATGCTTCAG+AGG | - | chr5.4:51809049-51809068 | None:intergenic | 35.0% | |
| TCAACTGTATTCAGGTATGT+TGG | + | chr5.4:51808380-51808399 | MS.gene062362:intron | 35.0% | |
| TTCAAGCCAAAAGGAATTAC+AGG | - | chr5.4:51808943-51808962 | None:intergenic | 35.0% | |
| TTCATACTGAAGAAACCACT+TGG | - | chr5.4:51808553-51808572 | None:intergenic | 35.0% | |
| TTGTGAAGATCAAAGATGAC+AGG | + | chr5.4:51807900-51807919 | MS.gene062362:CDS | 35.0% | |
| ! | GAAAATCGACTTCATAACCA+TGG | + | chr5.4:51809180-51809199 | MS.gene062362:CDS | 35.0% |
| ! | GTTGCTACTCAATCTTTTAC+AGG | + | chr5.4:51808814-51808833 | MS.gene062362:intron | 35.0% |
| !! | GCTTCAGTTGATAAAACTTC+TGG | + | chr5.4:51808904-51808923 | MS.gene062362:CDS | 35.0% |
| !! | TCAGTTGATAAAACTTCTGG+AGG | + | chr5.4:51808907-51808926 | MS.gene062362:CDS | 35.0% |
| !! | TGTTTTGTTGATGCAGAGAT+TGG | + | chr5.4:51807802-51807821 | MS.gene062362:intron | 35.0% |
| !!! | ATATGAAACTTTTGGGGCAA+TGG | - | chr5.4:51808685-51808704 | None:intergenic | 35.0% |
| !!! | GTAATTCCTTTTGGCTTGAA+AGG | + | chr5.4:51808943-51808962 | MS.gene062362:CDS | 35.0% |
| AAATGGTATCCAGTCAAAGC+AGG | + | chr5.4:51809149-51809168 | MS.gene062362:CDS | 40.0% | |
| AACAACATACTCCCTGACAA+AGG | - | chr5.4:51808184-51808203 | None:intergenic | 40.0% | |
| AACTGTCAAGGTTAGTGCAA+CGG | + | chr5.4:51807924-51807943 | MS.gene062362:intron | 40.0% | |
| AAGCCAAAAGGAATTACAGG+TGG | - | chr5.4:51808940-51808959 | None:intergenic | 40.0% | |
| AAGGGAAGTTCAGTGGTAAA+TGG | + | chr5.4:51809132-51809151 | MS.gene062362:CDS | 40.0% | |
| ACAATTGTGATCTAGATCGG+GGG | + | chr5.4:51807362-51807381 | MS.gene062362:intron | 40.0% | |
| AGTTTCATATGGAGTATGGC+TGG | + | chr5.4:51808695-51808714 | MS.gene062362:intron | 40.0% | |
| CACTTCCAAAGAACTCTCAT+TGG | - | chr5.4:51807129-51807148 | None:intergenic | 40.0% | |
| CAGTTGGAAGTTAAATGGTC+AGG | - | chr5.4:51808416-51808435 | None:intergenic | 40.0% | |
| GACAATTGTGATCTAGATCG+GGG | + | chr5.4:51807361-51807380 | MS.gene062362:intron | 40.0% | |
| GACCAACTTCAAAATCTGAC+TGG | - | chr5.4:51808791-51808810 | None:intergenic | 40.0% | |
| GAGTATGTTGTTGACCTTGT+TGG | + | chr5.4:51808192-51808211 | MS.gene062362:CDS | 40.0% | |
| GATACTTATTGATAGACGCG+AGG | + | chr5.4:51807148-51807167 | MS.gene062362:CDS | 40.0% | |
| GCTCCATTAATTGAGGAATC+TGG | - | chr5.4:51808240-51808259 | None:intergenic | 40.0% | |
| GGGAACCAGGAAATATTACT+GGG | + | chr5.4:51808214-51808233 | MS.gene062362:CDS | 40.0% | |
| GTAATAATGCTTCAGAGGCT+GGG | - | chr5.4:51809044-51809063 | None:intergenic | 40.0% | |
| GTAATGACATGGAGGAAGAA+GGG | + | chr5.4:51807063-51807082 | MS.gene062362:CDS | 40.0% | |
| GTATGTTGTTGACCTTGTTG+GGG | + | chr5.4:51808194-51808213 | MS.gene062362:CDS | 40.0% | |
| TCTGCAAAAAAGGTGGAAGA+TGG | + | chr5.4:51807522-51807541 | MS.gene062362:CDS | 40.0% | |
| TCTTGAACCATCACTAGCAA+TGG | + | chr5.4:51809230-51809249 | MS.gene062362:CDS | 40.0% | |
| TGAACCCAATGAGAGTTCTT+TGG | + | chr5.4:51807121-51807140 | MS.gene062362:CDS | 40.0% | |
| TGTAATAATGCTTCAGAGGC+TGG | - | chr5.4:51809045-51809064 | None:intergenic | 40.0% | |
| TGTAATGACATGGAGGAAGA+AGG | + | chr5.4:51807062-51807081 | MS.gene062362:CDS | 40.0% | |
| TTACACATCACCCACAAGTA+CGG | - | chr5.4:51807047-51807066 | None:intergenic | 40.0% | |
| TTTGTTGATGCAGAGATTGG+CGG | + | chr5.4:51807805-51807824 | MS.gene062362:intron | 40.0% | |
| ! | GAACCACCTGTAATTCCTTT+TGG | + | chr5.4:51808934-51808953 | MS.gene062362:CDS | 40.0% |
| ! | TGGTGCTGGATGTATGAAAA+GGG | + | chr5.4:51807474-51807493 | MS.gene062362:intron | 40.0% |
| !! | CAGAGATTGGCGGATTATAT+AGG | + | chr5.4:51807815-51807834 | MS.gene062362:intron | 40.0% |
| !! | CTGGCTTTGATCATCTTCAA+CGG | + | chr5.4:51808003-51808022 | MS.gene062362:intron | 40.0% |
| !! | TACATTGATGGCGCTTAAAG+CGG | + | chr5.4:51807097-51807116 | MS.gene062362:CDS | 40.0% |
| !! | TGGCTTTGATCATCTTCAAC+GGG | + | chr5.4:51808004-51808023 | MS.gene062362:intron | 40.0% |
| !! | TTGGTGCTGGATGTATGAAA+AGG | + | chr5.4:51807473-51807492 | MS.gene062362:intron | 40.0% |
| !!! | GACCAGTCAGATTTTGAAGT+TGG | + | chr5.4:51808786-51808805 | MS.gene062362:intron | 40.0% |
| AAAATCTCAATCGCCCTACG+TGG | + | chr5.4:51808305-51808324 | MS.gene062362:CDS | 45.0% | |
| AACCATCACTAGCAATGGAC+TGG | + | chr5.4:51809235-51809254 | MS.gene062362:CDS | 45.0% | |
| AAGATGACAGGCAACTGTCA+AGG | + | chr5.4:51807912-51807931 | MS.gene062362:CDS | 45.0% | |
| AAGGGGATCTGCAAAAAAGG+TGG | + | chr5.4:51807515-51807534 | MS.gene062362:CDS | 45.0% | |
| ACACCCTCCGCTTATATGAT+AGG | - | chr5.4:51807734-51807753 | None:intergenic | 45.0% | |
| AGATATCATGGGATGAGCTG+CGG | + | chr5.4:51809262-51809281 | MS.gene062362:CDS | 45.0% | |
| AGATGGTTAGTAAGCGGTTG+AGG | + | chr5.4:51807539-51807558 | MS.gene062362:CDS | 45.0% | |
| AGCAAGGGGATCTGCAAAAA+AGG | + | chr5.4:51807512-51807531 | MS.gene062362:CDS | 45.0% | |
| CATTGCAAAGGGAAGTTCAG+TGG | + | chr5.4:51809125-51809144 | MS.gene062362:CDS | 45.0% | |
| CGTTGAAGATGATCAAAGCC+AGG | - | chr5.4:51808005-51808024 | None:intergenic | 45.0% | |
| CTACTTGTTCCTGCTTTGAC+TGG | - | chr5.4:51809161-51809180 | None:intergenic | 45.0% | |
| GACTTCATAACCATGGTGCT+GGG | + | chr5.4:51809187-51809206 | MS.gene062362:CDS | 45.0% | |
| GGGAATGAATCCGTACTTGT+GGG | + | chr5.4:51807034-51807053 | MS.gene062362:CDS | 45.0% | |
| GGGCCAGATTCCTCAATTAA+TGG | + | chr5.4:51808234-51808253 | MS.gene062362:CDS | 45.0% | |
| GGGGAACCAGGAAATATTAC+TGG | + | chr5.4:51808213-51808232 | MS.gene062362:CDS | 45.0% | |
| GGTGATGTGTAATGACATGG+AGG | + | chr5.4:51807055-51807074 | MS.gene062362:CDS | 45.0% | |
| GGTGGAAGATGGTTAGTAAG+CGG | + | chr5.4:51807533-51807552 | MS.gene062362:CDS | 45.0% | |
| GTCGTACACTGACAAGATTG+CGG | + | chr5.4:51806992-51807011 | MS.gene062362:CDS | 45.0% | |
| GTGGGTGATGTGTAATGACA+TGG | + | chr5.4:51807052-51807071 | MS.gene062362:CDS | 45.0% | |
| TAAGCGCCATCAATGTAGGA+AGG | - | chr5.4:51807094-51807113 | None:intergenic | 45.0% | |
| TACACTGACAAGATTGCGGA+TGG | + | chr5.4:51806996-51807015 | MS.gene062362:CDS | 45.0% | |
| TATCATATAAGCGGAGGGTG+TGG | + | chr5.4:51807733-51807752 | MS.gene062362:intron | 45.0% | |
| TATTTCCTGGTTCCCCAACA+AGG | - | chr5.4:51808209-51808228 | None:intergenic | 45.0% | |
| TCTGGCCCAGTAATATTTCC+TGG | - | chr5.4:51808222-51808241 | None:intergenic | 45.0% | |
| TGGGAATGAATCCGTACTTG+TGG | + | chr5.4:51807033-51807052 | MS.gene062362:CDS | 45.0% | |
| ! | AAGCTTTTCAACGAGCACCA+AGG | - | chr5.4:51807234-51807253 | None:intergenic | 45.0% |
| ! | ACTTCATAACCATGGTGCTG+GGG | + | chr5.4:51809188-51809207 | MS.gene062362:CDS | 45.0% |
| ! | ATCAAAGAACGCATTGGTGC+TGG | + | chr5.4:51809285-51809304 | MS.gene062362:CDS | 45.0% |
| ! | CATATGGAGTATGGCTGGTT+AGG | + | chr5.4:51808700-51808719 | MS.gene062362:intron | 45.0% |
| ! | GCTTTAAGCGCCATCAATGT+AGG | - | chr5.4:51807098-51807117 | None:intergenic | 45.0% |
| ! | GGTGCTGGATGTATGAAAAG+GGG | + | chr5.4:51807475-51807494 | MS.gene062362:intron | 45.0% |
| ! | TTCTGCTTCTGAGAATGCCT+TGG | + | chr5.4:51807214-51807233 | MS.gene062362:CDS | 45.0% |
| ! | TTGGTGCTCGTTGAAAAGCT+TGG | + | chr5.4:51807233-51807252 | MS.gene062362:CDS | 45.0% |
| !! | GGACTGGCTTGAGATATCAT+GGG | + | chr5.4:51809251-51809270 | MS.gene062362:CDS | 45.0% |
| !! | TCCAGTTGGTAGTTTGTCCA+CGG | + | chr5.4:51807585-51807604 | MS.gene062362:CDS | 45.0% |
| !! | TGGACTGGCTTGAGATATCA+TGG | + | chr5.4:51809250-51809269 | MS.gene062362:CDS | 45.0% |
| AGATGCTGCATCATCCACGT+AGG | - | chr5.4:51808322-51808341 | None:intergenic | 50.0% | |
| AGCCAGTCCATTGCTAGTGA+TGG | - | chr5.4:51809240-51809259 | None:intergenic | 50.0% | |
| CAGTGTGTTGTGCTTCCAGT+TGG | + | chr5.4:51807571-51807590 | MS.gene062362:CDS | 50.0% | |
| CGACTTCATAACCATGGTGC+TGG | + | chr5.4:51809186-51809205 | MS.gene062362:CDS | 50.0% | |
| CTGCGGATCAAAGAACGCAT+TGG | + | chr5.4:51809279-51809298 | MS.gene062362:CDS | 50.0% | |
| GATGCTGCATCATCCACGTA+GGG | - | chr5.4:51808321-51808340 | None:intergenic | 50.0% | |
| GCATCGCGCAATTCTCTTCA+AGG | + | chr5.4:51807618-51807637 | MS.gene062362:CDS | 50.0% | |
| GTTTGTCCACGGGACTATGT+AGG | + | chr5.4:51807596-51807615 | MS.gene062362:CDS | 50.0% | |
| TCGCTGCCTTTCAAGCCAAA+AGG | - | chr5.4:51808952-51808971 | None:intergenic | 50.0% | |
| TTGGAATATCCCCAGCACCA+TGG | - | chr5.4:51809200-51809219 | None:intergenic | 50.0% | |
| ! | AGGTTGCAGGTACTGTGCTT+CGG | + | chr5.4:51807859-51807878 | MS.gene062362:CDS | 50.0% |
| !! | CCAGTTGGTAGTTTGTCCAC+GGG | + | chr5.4:51807586-51807605 | MS.gene062362:CDS | 50.0% |
| ACCTGCAACCTCGAGCAATG+CGG | - | chr5.4:51807850-51807869 | None:intergenic | 55.0% | |
| CCCGTGGACAAACTACCAAC+TGG | - | chr5.4:51807589-51807608 | None:intergenic | 55.0% | |
| GAAAAGGGGTTCCTTCCCTG+TGG | + | chr5.4:51807489-51807508 | MS.gene062362:intron | 55.0% | |
| GGTTAGTGCAACGGCTACTG+TGG | + | chr5.4:51807933-51807952 | MS.gene062362:intron | 55.0% | |
| GTTCCTTCCCTGTGGAGCAA+GGG | + | chr5.4:51807497-51807516 | MS.gene062362:CDS | 55.0% | |
| GTTGACCTTGTTGGGGAACC+AGG | + | chr5.4:51808201-51808220 | MS.gene062362:CDS | 55.0% | |
| TTCCTTCCCTGTGGAGCAAG+GGG | + | chr5.4:51807498-51807517 | MS.gene062362:CDS | 55.0% | |
| ! | GGAGGGTGTGGATTAACACG+AGG | + | chr5.4:51807745-51807764 | MS.gene062362:intron | 55.0% |
| ATCCCCTTGCTCCACAGGGA+AGG | - | chr5.4:51807503-51807522 | None:intergenic | 60.0% | |
| CAACCTCGAGCAATGCGGCA+CGG | - | chr5.4:51807845-51807864 | None:intergenic | 60.0% | |
| GCAGATCCCCTTGCTCCACA+GGG | - | chr5.4:51807507-51807526 | None:intergenic | 60.0% | |
| GCGATGCCTACATAGTCCCG+TGG | - | chr5.4:51807605-51807624 | None:intergenic | 60.0% | |
| GGTTCCTTCCCTGTGGAGCA+AGG | + | chr5.4:51807496-51807515 | MS.gene062362:CDS | 60.0% | |
| TGCAGATCCCCTTGCTCCAC+AGG | - | chr5.4:51807508-51807527 | None:intergenic | 60.0% | |
| GCCGCATTGCTCGAGGTTGC+AGG | + | chr5.4:51807846-51807865 | MS.gene062362:CDS | 65.0% | |
| TTGCCGTGCCGCATTGCTCG+AGG | + | chr5.4:51807839-51807858 | MS.gene062362:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 51806978 | 51809341 | 51806978 | ID=MS.gene062362 |
| chr5.4 | mRNA | 51806978 | 51809341 | 51806978 | ID=MS.gene062362.t1;Parent=MS.gene062362 |
| chr5.4 | exon | 51806978 | 51807279 | 51806978 | ID=MS.gene062362.t1.exon1;Parent=MS.gene062362.t1 |
| chr5.4 | CDS | 51806978 | 51807279 | 51806978 | ID=cds.MS.gene062362.t1;Parent=MS.gene062362.t1 |
| chr5.4 | exon | 51807495 | 51807639 | 51807495 | ID=MS.gene062362.t1.exon2;Parent=MS.gene062362.t1 |
| chr5.4 | CDS | 51807495 | 51807639 | 51807495 | ID=cds.MS.gene062362.t1;Parent=MS.gene062362.t1 |
| chr5.4 | exon | 51807818 | 51807933 | 51807818 | ID=MS.gene062362.t1.exon3;Parent=MS.gene062362.t1 |
| chr5.4 | CDS | 51807818 | 51807933 | 51807818 | ID=cds.MS.gene062362.t1;Parent=MS.gene062362.t1 |
| chr5.4 | exon | 51808191 | 51808393 | 51808191 | ID=MS.gene062362.t1.exon4;Parent=MS.gene062362.t1 |
| chr5.4 | CDS | 51808191 | 51808393 | 51808191 | ID=cds.MS.gene062362.t1;Parent=MS.gene062362.t1 |
| chr5.4 | exon | 51808836 | 51809341 | 51808836 | ID=MS.gene062362.t1.exon5;Parent=MS.gene062362.t1 |
| chr5.4 | CDS | 51808836 | 51809341 | 51808836 | ID=cds.MS.gene062362.t1;Parent=MS.gene062362.t1 |
| Gene Sequence |
| Protein sequence |
