AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062574

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062574.t1 MTR_4g059680 95.590 839 37 0 1 839 1 839 0.0 1641
MS.gene062574.t1 MTR_2g094060 80.357 840 155 4 1 838 1 832 0.0 1405
MS.gene062574.t1 MTR_2g094020 78.690 840 173 3 1 838 1 836 0.0 1387
MS.gene062574.t1 MTR_2g094060 80.346 809 149 4 1 807 1 801 0.0 1349
MS.gene062574.t1 MTR_2g094060 81.700 694 117 4 1 692 1 686 0.0 1177
MS.gene062574.t1 MTR_8g016230 55.136 847 356 11 5 839 4 838 0.0 927
MS.gene062574.t1 MTR_5g021190 55.621 854 346 15 1 838 1 837 0.0 918
MS.gene062574.t1 MTR_2g100110 55.114 831 349 11 21 839 23 841 0.0 913
MS.gene062574.t1 MTR_8g085210 52.130 892 362 19 1 838 16 896 0.0 888
MS.gene062574.t1 MTR_2g039120 56.581 737 288 10 2 725 8 725 0.0 844
MS.gene062574.t1 MTR_2g042610 51.240 847 368 15 8 838 11 828 0.0 834
MS.gene062574.t1 MTR_1g018200 57.504 713 280 9 24 725 29 729 0.0 825
MS.gene062574.t1 MTR_1g023120 56.233 722 278 10 26 729 29 730 0.0 814
MS.gene062574.t1 MTR_2g039120 56.553 702 273 10 2 690 8 690 0.0 801
MS.gene062574.t1 MTR_3g112370 54.167 744 295 12 7 732 17 732 0.0 796
MS.gene062574.t1 MTR_3g096900 56.681 711 291 9 24 722 25 730 0.0 793
MS.gene062574.t1 MTR_5g025830 48.681 834 377 14 26 838 28 831 0.0 788
MS.gene062574.t1 MTR_5g024080 48.616 831 383 15 22 838 6 806 0.0 783
MS.gene062574.t1 MTR_1g023120 55.636 692 269 10 56 729 1 672 0.0 764
MS.gene062574.t1 MTR_3g005570 47.087 841 392 15 10 838 10 809 0.0 760
MS.gene062574.t1 MTR_3g096900 56.112 679 281 9 24 690 25 698 0.0 742
MS.gene062574.t1 MTR_2g039120 56.289 636 248 9 2 624 8 626 0.0 719
MS.gene062574.t1 MTR_2g039120 57.286 597 228 7 2 588 8 587 0.0 695
MS.gene062574.t1 MTR_2g100110 58.261 575 224 6 21 588 23 588 0.0 689
MS.gene062574.t1 MTR_3g117840 43.149 832 420 16 24 839 33 827 0.0 684
MS.gene062574.t1 MTR_4g073290 44.671 835 402 21 26 838 28 824 0.0 679
MS.gene062574.t1 MTR_3g096910 48.501 734 335 13 6 730 7 706 0.0 673
MS.gene062574.t1 MTR_3g096900 57.166 607 244 8 24 619 25 626 0.0 672
MS.gene062574.t1 MTR_3g088520 48.876 712 317 12 24 729 24 694 0.0 655
MS.gene062574.t1 MTR_3g088520 47.941 680 307 12 56 729 1 639 0.0 608
MS.gene062574.t1 MTR_3g096910 45.254 590 280 13 150 730 1 556 1.29e-159 477
MS.gene062574.t1 MTR_5g022590 40.483 331 158 8 45 373 11 304 3.19e-75 251
MS.gene062574.t1 MTR_5g022590 34.615 130 70 3 683 803 295 418 4.17e-14 75.9
MS.gene062574.t1 MTR_4g126330 35.663 415 155 13 283 690 133 442 1.04e-59 210
MS.gene062574.t1 MTR_4g126330 68.478 92 29 0 81 172 25 116 1.16e-36 144
MS.gene062574.t1 MTR_3g005610 36.964 303 155 8 420 714 6 280 5.93e-42 155
MS.gene062574.t1 MTR_2g059440 34.700 317 170 9 422 729 8 296 1.44e-35 137
MS.gene062574.t1 MTR_2g100000 31.707 328 183 10 36 332 64 381 1.36e-31 132
MS.gene062574.t1 MTR_2g059430 33.574 277 123 7 456 729 10 228 7.72e-28 113
MS.gene062574.t1 MTR_2g100000 30.159 252 135 10 112 332 2 243 7.05e-15 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062574.t1 AT2G28470 73.109 833 205 7 20 839 26 852 0.0 1263
MS.gene062574.t1 AT2G28470 73.109 833 205 7 20 839 26 852 0.0 1263
MS.gene062574.t1 AT2G28470 73.109 833 205 7 20 839 20 846 0.0 1261
MS.gene062574.t1 AT2G28470 73.109 833 205 7 20 839 20 846 0.0 1261
MS.gene062574.t1 AT2G28470 75.110 683 154 5 20 692 26 702 0.0 1063
MS.gene062574.t1 AT3G13750 54.697 841 356 13 11 839 20 847 0.0 915
MS.gene062574.t1 AT4G36360 54.269 855 346 15 6 838 14 845 0.0 914
MS.gene062574.t1 AT2G32810 52.867 872 370 15 2 839 13 877 0.0 912
MS.gene062574.t1 AT4G36360 54.269 855 345 16 6 838 14 844 0.0 910
MS.gene062574.t1 AT2G32810 53.047 837 353 14 2 805 13 842 0.0 884
MS.gene062574.t1 AT5G20710 49.123 855 387 15 1 838 3 826 0.0 826
MS.gene062574.t1 AT3G52840 56.479 710 285 9 26 725 83 778 0.0 810
MS.gene062574.t1 AT3G52840 56.479 710 285 9 26 725 29 724 0.0 809
MS.gene062574.t1 AT4G26140 55.367 708 297 8 26 725 29 725 0.0 802
MS.gene062574.t1 AT1G45130 55.927 717 291 9 23 727 28 731 0.0 800
MS.gene062574.t1 AT4G26140 53.888 733 294 11 26 725 29 750 0.0 790
MS.gene062574.t1 AT5G63810 53.389 723 312 10 23 730 29 741 0.0 784
MS.gene062574.t1 AT5G56870 53.911 716 297 10 24 725 27 723 0.0 777
MS.gene062574.t1 AT1G31740 47.642 848 358 17 8 838 1 779 0.0 750
MS.gene062574.t1 AT4G26140 53.868 698 278 11 26 690 29 715 0.0 749
MS.gene062574.t1 AT1G77410 46.963 856 396 19 1 839 1 815 0.0 729
MS.gene062574.t1 AT1G77410 46.690 861 396 20 1 839 1 820 0.0 723
MS.gene062574.t1 AT1G45130 54.364 653 273 9 87 727 13 652 0.0 696
MS.gene062574.t1 AT4G26140 56.271 606 248 7 26 623 29 625 0.0 689
MS.gene062574.t1 AT4G26140 56.271 606 246 7 26 623 29 623 0.0 688
MS.gene062574.t1 AT4G26140 56.271 606 246 7 26 623 29 623 0.0 688
MS.gene062574.t1 AT5G63800 47.325 729 344 10 3 724 9 704 0.0 656
MS.gene062574.t1 AT2G16730 42.349 843 412 20 26 838 44 842 0.0 654
MS.gene062574.t1 AT4G26140 59.470 528 201 5 26 548 29 548 0.0 640
MS.gene062574.t1 AT4G35010 40.904 841 431 16 24 838 39 839 0.0 639
MS.gene062574.t1 AT4G26140 57.324 553 198 8 26 548 29 573 0.0 629
MS.gene062574.t1 AT4G26140 57.324 553 198 8 26 548 29 573 0.0 629
MS.gene062574.t1 AT4G38590 40.722 803 420 18 56 838 1 767 0.0 609
MS.gene062574.t1 AT4G38590 40.323 806 423 18 52 838 65 831 0.0 600
MS.gene062574.t1 AT1G77410 45.144 731 344 18 126 839 19 709 0.0 580
MS.gene062574.t1 AT1G77410 45.144 731 344 18 126 839 19 709 0.0 580
MS.gene062574.t1 AT5G20710 45.859 652 305 15 204 838 1 621 0.0 566
MS.gene062574.t1 AT2G04060 36.757 370 155 8 291 657 23 316 9.58e-57 202
MS.gene062574.t1 AT1G72990 34.043 376 187 12 7 336 34 394 3.72e-43 167
MS.gene062574.t1 AT1G72990 34.043 376 187 12 7 336 34 394 3.72e-43 167
MS.gene062574.t1 AT1G72990 35.119 336 169 10 36 336 18 339 1.49e-42 165
MS.gene062574.t1 AT1G72990 34.462 325 164 10 47 336 22 332 5.46e-38 151
MS.gene062574.t1 AT2G04062 40.782 179 83 3 21 198 2 158 8.33e-38 139
MS.gene062574.t1 AT3G53080 38.043 92 55 2 749 839 63 153 2.89e-16 77.4
MS.gene062574.t1 AT3G53075 38.824 85 49 3 756 839 81 163 2.34e-11 63.5
MS.gene062574.t1 AT3G53075 38.824 85 49 3 756 839 111 193 2.68e-11 63.9

Find 221 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTCTTCACAAAGCTTTA+TGG 0.108976 4.3:-42247164 None:intergenic
TCCAAAGCTTGCAAATTTAA+TGG 0.180156 4.3:-42249259 None:intergenic
TAAACAGTGGTTTCCCTCTT+TGG 0.206116 4.3:+42245703 MS.gene062574:intron
GTGATATGAATTGCCATTAA+AGG 0.210455 4.3:-42247393 None:intergenic
TCCATTAAATTTGCAAGCTT+TGG 0.229371 4.3:+42249258 MS.gene062574:CDS
AAAAGAAAAGGTTGATTCTT+TGG 0.230985 4.3:+42247602 MS.gene062574:CDS
GGAAACATTGATACTCATTA+TGG 0.246934 4.3:+42246007 MS.gene062574:CDS
GCATGTGCTGAATGGAATTA+TGG 0.269866 4.3:+42245589 MS.gene062574:CDS
AACCATAGGTTTCTTGCATT+TGG 0.290523 4.3:+42246550 MS.gene062574:intron
TTTCCAGTTACAAGTGTAAT+AGG 0.294107 4.3:-42248095 None:intergenic
ACATACATCTCTTCGAATTC+TGG 0.294877 4.3:+42248753 MS.gene062574:CDS
GATGCAACGGTAACCTTTAA+TGG 0.296338 4.3:+42247380 MS.gene062574:CDS
GAGTTTAACAGTGGGATTAC+AGG 0.301605 4.3:+42248136 MS.gene062574:CDS
ATCTTTAAGATGACCCCATT+TGG 0.301972 4.3:-42247131 None:intergenic
GGAGTATCAATTAATACATT+TGG 0.304581 4.3:+42249495 MS.gene062574:CDS
TGCCAGATTGAAAATGAGTA+TGG 0.308621 4.3:+42245986 MS.gene062574:intron
CATCTTTAGATTTCTGAATA+AGG 0.314571 4.3:-42245129 None:intergenic
ACTACTTATGGTACTCATTA+AGG 0.319553 4.3:+42247739 MS.gene062574:CDS
TTTGGTTTCTTGTCAGAGTT+TGG 0.319854 4.3:-42246386 None:intergenic
CTGCTAAAACCTACATCAAT+TGG 0.331484 4.3:+42246035 MS.gene062574:CDS
TCCACAATTCTTGAGGCATT+TGG 0.332078 4.3:-42248817 None:intergenic
CGCTTCATTTCTGCTTTGAA+TGG 0.335178 4.3:-42245768 None:intergenic
TCTTTGGACGGTTCAAGTTC+AGG 0.335464 4.3:+42247618 MS.gene062574:CDS
AGCAGAAATGAAGCGGTTTA+CGG 0.343503 4.3:+42245776 MS.gene062574:CDS
CAAGTCAAAGGTTGATTTGT+AGG 0.348113 4.3:-42248534 None:intergenic
AGATCTTCCACTGGTCTATA+AGG 0.348264 4.3:-42246583 None:intergenic
ATGGAAGAGATCACCTGATT+AGG 0.352051 4.3:-42249240 None:intergenic
CCTGATGCATTCACAAAATC+TGG 0.355631 4.3:+42247678 MS.gene062574:CDS
AAAACCTGAGATAAAATTAT+AGG 0.358367 4.3:-42245852 None:intergenic
ATACCTATTACACTTGTAAC+TGG 0.364105 4.3:+42248092 MS.gene062574:CDS
CAACACTCTTGTATTGTTTG+AGG 0.367378 4.3:+42249056 MS.gene062574:CDS
CGGAAGCTGCAGCAGCAATA+AGG 0.368701 4.3:+42249314 MS.gene062574:CDS
AATACAAGAGTGTTGCTATC+TGG 0.369099 4.3:-42249048 None:intergenic
CCTCTGATTACCTCAAGATT+TGG 0.373007 4.3:-42247223 None:intergenic
ACCTGTAGACACGTGGAATT+CGG 0.375068 4.3:+42249164 MS.gene062574:CDS
GATTGCAACCGGGTTACTTC+CGG 0.384379 4.3:-42248664 None:intergenic
GGATCGAGCAGTTGTAATAT+TGG 0.385397 4.3:+42249474 MS.gene062574:CDS
GACAAAGCATAGGGCGATAC+TGG 0.388078 4.3:+42248727 MS.gene062574:CDS
CTGATAGAAGTGACTACTTA+TGG 0.392996 4.3:+42247727 MS.gene062574:CDS
TTTGTAAATGGGAAGCTTGC+TGG 0.395851 4.3:+42247919 MS.gene062574:CDS
CCCGTGAAGTCGATTGCAAC+CGG 0.400569 4.3:-42248675 None:intergenic
ACTGACTCATGCAATTATAA+AGG 0.402609 4.3:+42248780 MS.gene062574:CDS
AACTGAATCTTTAAAAGAAA+AGG 0.403528 4.3:+42247590 MS.gene062574:CDS
TCTTTAAGATGACCCCATTT+GGG 0.405598 4.3:-42247130 None:intergenic
GGATGGGAAAAGGCGAAGCT+TGG 0.408250 4.3:+42248697 MS.gene062574:CDS
GGAATGCCCTTATCCTAATC+AGG 0.408387 4.3:+42249227 MS.gene062574:CDS
GACCCCTCGAAAATATCTTT+TGG 0.408702 4.3:+42249090 MS.gene062574:CDS
GGCCTTCAAGGTGAATTTGT+AGG 0.411186 4.3:+42248465 MS.gene062574:CDS
TCAGTTCGGAACTTAATTCC+CGG 0.413936 4.3:-42245738 None:intergenic
CATCAATTGGGCAGCATCAA+TGG 0.417444 4.3:+42246048 MS.gene062574:CDS
AAACGCAGGGTTCTTATGTC+TGG 0.420682 4.3:+42244770 MS.gene062574:CDS
CTCTTGATACAGGTGTTCCC+TGG 0.424231 4.3:+42246077 MS.gene062574:CDS
GAGATATTAGACAGCCCAAA+TGG 0.429273 4.3:+42247116 MS.gene062574:CDS
GGACCAGGAGATGTAATTGT+TGG 0.429657 4.3:-42247202 None:intergenic
TGAATGCAGGTTGGCCTTCA+AGG 0.430429 4.3:+42248453 MS.gene062574:intron
CTCACAGCAATGGACATATC+AGG 0.438762 4.3:+42248350 MS.gene062574:CDS
GGCTCTATCCACTGTGCAAA+AGG 0.445689 4.3:+42249335 MS.gene062574:CDS
ACTAACTTTGGTCGAACAAC+CGG 0.451552 4.3:+42246925 MS.gene062574:CDS
TGCCTGGTTGCACATAATCC+AGG 0.452032 4.3:-42246095 None:intergenic
GAGATCACCTGATTAGGATA+AGG 0.452217 4.3:-42249234 None:intergenic
AACAGAACCTGGCCTCGAAC+CGG 0.453067 4.3:-42245199 None:intergenic
TCCGAATTCCACGTGTCTAC+AGG 0.454074 4.3:-42249165 None:intergenic
GAAACATTGATACTCATTAT+GGG 0.454960 4.3:+42246008 MS.gene062574:CDS
TGAATGGTTCATTATCAGTT+CGG 0.456359 4.3:-42245752 None:intergenic
CATAGAGCATTGGTCATTGA+TGG 0.456546 4.3:+42244746 MS.gene062574:CDS
TTCAAACCTTTCAATACTAC+CGG 0.456640 4.3:-42248303 None:intergenic
GATGGGAAAAGGCGAAGCTT+GGG 0.456806 4.3:+42248698 MS.gene062574:CDS
GACTTCACGGGGATGGGAAA+AGG 0.458591 4.3:+42248687 MS.gene062574:CDS
GACCAATGCTCTATGATCAT+AGG 0.458614 4.3:-42244738 None:intergenic
GGGAGTAAAGCCGGCAACTA+CGG 0.461929 4.3:+42248047 MS.gene062574:intron
GATGCACCCATTGATGAGTA+TGG 0.462427 4.3:+42246979 MS.gene062574:CDS
CTCTTTGTTACTCCTCTGCA+TGG 0.463563 4.3:-42249522 None:intergenic
CTTCACGTTTCCGTAGTTGC+CGG 0.463928 4.3:-42248057 None:intergenic
GGCAATTCATATCACTTGCC+TGG 0.464088 4.3:+42247401 MS.gene062574:CDS
CATAGGTTTCTTGCATTTGG+AGG 0.464730 4.3:+42246553 MS.gene062574:intron
TTATCCTCGTAGCACTCCTC+AGG 0.464838 4.3:+42244802 MS.gene062574:CDS
TGCAATCGACTTCACGGGGA+TGG 0.465293 4.3:+42248680 MS.gene062574:CDS
AGATCACCTGATTAGGATAA+GGG 0.465515 4.3:-42249233 None:intergenic
AGTACAACATTCTTGCAGTC+TGG 0.465954 4.3:-42247443 None:intergenic
ACAGTGGGTGCGGGGATCAC+CGG 0.467033 4.3:+42248279 MS.gene062574:CDS
TTAGATTTCTGAATAAGGTC+AGG 0.467971 4.3:-42245124 None:intergenic
TTGCATACCATACTCATCAA+TGG 0.471095 4.3:-42246986 None:intergenic
GACCTACAAATTCACCTTGA+AGG 0.471242 4.3:-42248467 None:intergenic
GCACGAACCGGTTCGAGGCC+AGG 0.474407 4.3:+42245192 MS.gene062574:CDS
CTACAAATCAACCTTTGACT+TGG 0.475174 4.3:+42248535 MS.gene062574:CDS
CGTGCCGATGTTGGCAAGGA+AGG 0.477173 4.3:-42247354 None:intergenic
AGAAAACATACAATTGGATC+AGG 0.477927 4.3:-42246124 None:intergenic
ATGGCTGCATCTCTTGATAC+AGG 0.478755 4.3:+42246067 MS.gene062574:CDS
GTCCATACGCATGTGCTGAA+TGG 0.478791 4.3:+42245581 MS.gene062574:CDS
TTGGATCAGGTGCATTTGCC+TGG 0.479376 4.3:-42246111 None:intergenic
AGATATTAGACAGCCCAAAT+GGG 0.481567 4.3:+42247117 MS.gene062574:CDS
CTTATTCAGAAATCTAAAGA+TGG 0.482049 4.3:+42245130 MS.gene062574:CDS
GGGTGCGGGGATCACCGGTC+CGG 0.482231 4.3:+42248284 MS.gene062574:CDS
CCCGGTTGCAATCGACTTCA+CGG 0.483140 4.3:+42248674 MS.gene062574:CDS
GTTCAAGTTCAGGATGGAGT+TGG 0.483521 4.3:+42247628 MS.gene062574:CDS
TCAACCTTTGACTTGGTACA+AGG 0.485783 4.3:+42248542 MS.gene062574:CDS
TTTCTGGAACCTGCACGAAC+CGG 0.487239 4.3:+42245180 MS.gene062574:CDS
CAGGTCTTTATGTGCATCTC+CGG 0.488160 4.3:+42245554 MS.gene062574:CDS
ATTCATATCACTTGCCTGGA+TGG 0.489568 4.3:+42247405 MS.gene062574:CDS
GAAGGCAGGGGAGATTTGGT+TGG 0.491644 4.3:+42245508 MS.gene062574:CDS
GTCCTTCATATTGAATCCCT+TGG 0.494022 4.3:+42247880 MS.gene062574:CDS
CAGACTGCAGTTTACAAGAC+AGG 0.494833 4.3:+42247317 MS.gene062574:intron
GGAACGCCTCGTGGGACTTG+TGG 0.497693 4.3:+42249279 MS.gene062574:CDS
TGCATACCATACTCATCAAT+GGG 0.498173 4.3:-42246985 None:intergenic
GATCGTTAACAGGCCTGCAT+TGG 0.502117 4.3:+42249453 MS.gene062574:intron
GGTAGGTCCTGTACTGTCAC+TGG 0.504465 4.3:+42249206 MS.gene062574:CDS
AAGCATGAAGGGCATGGCCA+AGG 0.508424 4.3:-42247897 None:intergenic
ACGAACTTTGTTGCTCCCTC+CGG 0.508772 4.3:+42248645 MS.gene062574:CDS
TGTTGAAGCTGCTTGTACAT+AGG 0.510023 4.3:+42249551 MS.gene062574:CDS
GTGAAGGCGGTAGCAGCAGC+AGG 0.510569 4.3:+42245535 MS.gene062574:CDS
CATGTGCTGAATGGAATTAT+GGG 0.511728 4.3:+42245590 MS.gene062574:CDS
TGCTCCCTCCGGAAGTAACC+CGG 0.513590 4.3:+42248656 MS.gene062574:CDS
GAAAAGGTTGATTCTTTGGA+CGG 0.515087 4.3:+42247606 MS.gene062574:CDS
TTCCATTCAGCACATGCGTA+TGG 0.516436 4.3:-42245583 None:intergenic
GGCCTCGAACCGGTTCGTGC+AGG 0.517680 4.3:-42245189 None:intergenic
TCCCATTTACAAAAGCATGA+AGG 0.520336 4.3:-42247909 None:intergenic
GCAATCGACTTCACGGGGAT+GGG 0.522163 4.3:+42248681 MS.gene062574:CDS
CCGGTTGCAATCGACTTCAC+GGG 0.523036 4.3:+42248675 MS.gene062574:CDS
TGATGCTGCCCAATTGATGT+AGG 0.523916 4.3:-42246044 None:intergenic
TGCTAAAACCTACATCAATT+GGG 0.525236 4.3:+42246036 MS.gene062574:CDS
TATTGCTGCTGCAGCTTCCG+TGG 0.525562 4.3:-42249311 None:intergenic
TACCATGGAGGGACTAACTT+TGG 0.528934 4.3:+42246913 MS.gene062574:CDS
AACCTGCACGAACCGGTTCG+AGG 0.532084 4.3:+42245187 MS.gene062574:CDS
CCCATTTACAAAAGCATGAA+GGG 0.534035 4.3:-42247908 None:intergenic
TTATTCAGAAATCTAAAGAT+GGG 0.534082 4.3:+42245131 MS.gene062574:CDS
GGATACAGAATCAGAAAGAA+AGG 0.538630 4.3:+42249185 MS.gene062574:CDS
AGCATGAAGGGCATGGCCAA+GGG 0.539805 4.3:-42247896 None:intergenic
AATTTGTAGGTCTGCCTAGT+GGG 0.542274 4.3:+42248478 MS.gene062574:CDS
AGATTTGGTTGGATTTGTGA+AGG 0.546051 4.3:+42245519 MS.gene062574:CDS
TCCAAATGCCTCAAGAATTG+TGG 0.547245 4.3:+42248816 MS.gene062574:CDS
AGGGATTCAATATGAAGGAC+AGG 0.547829 4.3:-42247877 None:intergenic
GCAAGCTTTGGAACGCCTCG+TGG 0.548709 4.3:+42249270 MS.gene062574:CDS
TGCATCAGACGTGCCGATGT+TGG 0.549802 4.3:-42247363 None:intergenic
ACCTTTCAATACTACCGGAC+CGG 0.550202 4.3:-42248298 None:intergenic
ACAACTGCTCGATCCAATGC+AGG 0.550387 4.3:-42249466 None:intergenic
ACCGGTCCGGTAGTATTGAA+AGG 0.554176 4.3:+42248297 MS.gene062574:CDS
TCGATCTCTCCTCACAGCAA+TGG 0.555757 4.3:+42248340 MS.gene062574:CDS
TCATAACTCGTTGAAATGAA+AGG 0.557342 4.3:-42246952 None:intergenic
CAAGCTTTGGAACGCCTCGT+GGG 0.559827 4.3:+42249271 MS.gene062574:CDS
GAATAAAATGCAACCAAAGA+GGG 0.559955 4.3:-42245716 None:intergenic
CTTGTATTGTTTGAGGAAAG+CGG 0.561204 4.3:+42249063 MS.gene062574:CDS
AAAGGCGAAGCTTGGGTGAA+CGG 0.561913 4.3:+42248705 MS.gene062574:CDS
TGGTCATTGATGGCAAACGC+AGG 0.563477 4.3:+42244756 MS.gene062574:CDS
AGTGCTACGAGGATAATGAA+TGG 0.564480 4.3:-42244795 None:intergenic
GATCCAACAATTACATCTCC+TGG 0.566221 4.3:+42247199 MS.gene062574:CDS
TTCCACGTGTCTACAGGTGG+AGG 0.567263 4.3:-42249159 None:intergenic
ATTACCTTGTACCAAGTCAA+AGG 0.567749 4.3:-42248546 None:intergenic
TGGGTGAACGGACAAAGCAT+AGG 0.569142 4.3:+42248717 MS.gene062574:CDS
CATCGGCACGTCTGATGCAA+CGG 0.572162 4.3:+42247367 MS.gene062574:CDS
TACCTATGATCATAGAGCAT+TGG 0.573341 4.3:+42244736 MS.gene062574:CDS
GCGGTTTACGGCTAAGATTG+TGG 0.573550 4.3:+42245788 MS.gene062574:CDS
GCCTGGTTGCACATAATCCA+GGG 0.575025 4.3:-42246094 None:intergenic
AACACTTACAATGTCTGTGA+TGG 0.576570 4.3:-42248843 None:intergenic
CTTTATGTGCATCTCCGGAT+CGG 0.576900 4.3:+42245559 MS.gene062574:CDS
ACTTGTGGAAACTACAACCA+CGG 0.577165 4.3:+42249294 MS.gene062574:CDS
AGATGTAATTGTTGGATCAG+TGG 0.577455 4.3:-42247194 None:intergenic
GGCCAAGGGATTCAATATGA+AGG 0.577553 4.3:-42247882 None:intergenic
GATATCATGTACCGCGATCG+TGG 0.584092 4.3:+42249019 MS.gene062574:intron
TCCGCCTTCCTTGCCAACAT+CGG 0.584196 4.3:+42247350 MS.gene062574:CDS
GCCGATGTTGGCAAGGAAGG+CGG 0.587678 4.3:-42247351 None:intergenic
CATTCAAAGCAGAAATGAAG+CGG 0.588635 4.3:+42245769 MS.gene062574:CDS
GGGCATTCCAGTGACAGTAC+AGG 0.590217 4.3:-42249213 None:intergenic
TGTTGTACTCAATACTGCAA+AGG 0.591137 4.3:+42247457 MS.gene062574:CDS
CGTTGAAATGAAAGGTCCAC+CGG 0.592253 4.3:-42246944 None:intergenic
ATTGTTGATGAAGATAATGC+AGG 0.592464 4.3:+42247847 MS.gene062574:CDS
ATCTCCTGGTCCAAATCTTG+AGG 0.593085 4.3:+42247213 MS.gene062574:CDS
TTACAAAAGCATGAAGGGCA+TGG 0.593688 4.3:-42247903 None:intergenic
GGGTGAACGGACAAAGCATA+GGG 0.594372 4.3:+42248718 MS.gene062574:CDS
GGTCTGCCTAGTGGGAATGT+TGG 0.595192 4.3:+42248486 MS.gene062574:CDS
ACAGAATCAGAAAGAAAGGT+AGG 0.595329 4.3:+42249189 MS.gene062574:CDS
GGAATAAAATGCAACCAAAG+AGG 0.597433 4.3:-42245717 None:intergenic
CAGACGTGCCGATGTTGGCA+AGG 0.597718 4.3:-42247358 None:intergenic
TGCAACCGGGTTACTTCCGG+AGG 0.598481 4.3:-42248661 None:intergenic
GAATTCGAAGAGATGTATGT+TGG 0.598592 4.3:-42248750 None:intergenic
AACTTTGGTCGAACAACCGG+TGG 0.598834 4.3:+42246928 MS.gene062574:CDS
TATTCAGAAATCTAAAGATG+GGG 0.599714 4.3:+42245132 MS.gene062574:CDS
TGGACGGTTCAAGTTCAGGA+TGG 0.600414 4.3:+42247622 MS.gene062574:CDS
CCGTGAAGTCGATTGCAACC+GGG 0.601198 4.3:-42248674 None:intergenic
CTCTAAAATAGTACCATGGA+GGG 0.602725 4.3:+42246902 MS.gene062574:intron
TTTATGACACAGTGGGTGCG+GGG 0.603678 4.3:+42248271 MS.gene062574:CDS
GCAAAAGCAAGATCTTCCAC+TGG 0.605145 4.3:-42246592 None:intergenic
GGTCATTGATGGCAAACGCA+GGG 0.610495 4.3:+42244757 MS.gene062574:CDS
TCAGGCGTTGAAATACCGAC+AGG 0.613348 4.3:-42247660 None:intergenic
TCTATGATCATAGGTAACAT+TGG 0.616006 4.3:-42244729 None:intergenic
GACCAAAGTTAGTCCCTCCA+TGG 0.620997 4.3:-42246915 None:intergenic
TGCTGTGCCTTATAGACCAG+TGG 0.621467 4.3:+42246576 MS.gene062574:CDS
CACATGCGTATGGACCGATC+CGG 0.623729 4.3:-42245573 None:intergenic
AAGATGCTCACAGACCATCC+AGG 0.623987 4.3:-42247419 None:intergenic
GAATTTGTAGGTCTGCCTAG+TGG 0.624418 4.3:+42248477 MS.gene062574:CDS
TCCCTGGATTATGTGCAACC+AGG 0.626754 4.3:+42246093 MS.gene062574:CDS
GATCTCCTGAGTTTAACAGT+GGG 0.629737 4.3:+42248128 MS.gene062574:CDS
TTTGGTTGGATTTGTGAAGG+CGG 0.631236 4.3:+42245522 MS.gene062574:CDS
GATATTAGACAGCCCAAATG+GGG 0.631786 4.3:+42247118 MS.gene062574:CDS
TGATCTCCTGAGTTTAACAG+TGG 0.632982 4.3:+42248127 MS.gene062574:CDS
ATGTGGACTGAGAATTGGAG+TGG 0.633627 4.3:+42246410 MS.gene062574:CDS
GAATTCCACGTGTCTACAGG+TGG 0.637121 4.3:-42249162 None:intergenic
GGACTGAGAATTGGAGTGGA+TGG 0.637893 4.3:+42246414 MS.gene062574:CDS
CACTGTCCAACATTCCCACT+AGG 0.640040 4.3:-42248492 None:intergenic
ACATTTGGAAATCCATGCAG+AGG 0.643274 4.3:+42249510 MS.gene062574:CDS
ATTACCTCAAGATTTGGACC+AGG 0.647413 4.3:-42247217 None:intergenic
GTAATCCCACTGTTAAACTC+AGG 0.649493 4.3:-42248133 None:intergenic
ATTCAGAAATCTAAAGATGG+GGG 0.651429 4.3:+42245133 MS.gene062574:CDS
CGGCAACTACGGAAACGTGA+AGG 0.657390 4.3:+42248058 MS.gene062574:CDS
GAGAATCTCTATGCATCACA+AGG 0.664083 4.3:+42245825 MS.gene062574:CDS
CTTGCTCTAAAATAGTACCA+TGG 0.665790 4.3:+42246898 MS.gene062574:intron
TCCACGTGTCTACAGGTGGA+GGG 0.667636 4.3:-42249158 None:intergenic
ACCCTCCACCTGTAGACACG+TGG 0.670597 4.3:+42249157 MS.gene062574:CDS
TCTGGCTTCAACCACGATCG+CGG 0.670748 4.3:-42249030 None:intergenic
CGGTTGCAATCGACTTCACG+GGG 0.684412 4.3:+42248676 MS.gene062574:CDS
GCAACCGGGTTACTTCCGGA+GGG 0.689642 4.3:-42248660 None:intergenic
GCTCTAAAATAGTACCATGG+AGG 0.695242 4.3:+42246901 MS.gene062574:intron
TCATCTTAAAGATTTGCACA+AGG 0.698045 4.3:+42247141 MS.gene062574:CDS
AGTTGGATTAGTGAACCTGT+CGG 0.705602 4.3:+42247645 MS.gene062574:CDS
TAGTTTCCACAAGTCCCACG+AGG 0.717747 4.3:-42249285 None:intergenic
CGGAAACGTGAAGGTCAACG+TGG 0.719577 4.3:+42248067 MS.gene062574:CDS
AATCTCTATGCATCACAAGG+AGG 0.731755 4.3:+42245828 MS.gene062574:CDS
CTGATATGTCCATTGCTGTG+AGG 0.748601 4.3:-42248349 None:intergenic
ACTCGAGCAAATAAACACGA+CGG 0.751802 4.3:+42247704 MS.gene062574:CDS
GAAACCTGAGGAGTGCTACG+AGG 0.752357 4.3:-42244806 None:intergenic
GTATTGTTTGAGGAAAGCGG+AGG 0.756855 4.3:+42249066 MS.gene062574:CDS
CTAGTGGGAATGTTGGACAG+TGG 0.759784 4.3:+42248493 MS.gene062574:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTGTTCAAAATAAATA+TGG - chr4.3:42247023-42247042 None:intergenic 10.0%
!! ATGAAAATTAAAAATTAAGT+AGG - chr4.3:42246303-42246322 None:intergenic 10.0%
!! CAAAATGATTTAAATAGAAA+AGG - chr4.3:42246450-42246469 None:intergenic 15.0%
!! TAAATATATAAATATGCTAC+TGG + chr4.3:42247084-42247103 MS.gene062574:intron 15.0%
!! TCACAAAAATAATGAAAAAT+TGG - chr4.3:42245906-42245925 None:intergenic 15.0%
!! TTTGAACAATATTATGTTTA+AGG + chr4.3:42247030-42247049 MS.gene062574:intron 15.0%
!!! ATCTTTCTTTTTTTAGTAAA+AGG + chr4.3:42246177-42246196 MS.gene062574:intron 15.0%
!!! TTTTCAATGTATCATTTTAA+GGG + chr4.3:42245625-42245644 MS.gene062574:intron 15.0%
!!! TTTTGGTGAATTAATTATAT+TGG + chr4.3:42248419-42248438 MS.gene062574:intron 15.0%
!! AAAACCTGAGATAAAATTAT+AGG - chr4.3:42245855-42245874 None:intergenic 20.0%
!! AAATAGAAAAAGGTTAACAT+GGG - chr4.3:42247817-42247836 None:intergenic 20.0%
!! TTATTCAGAAATCTAAAGAT+GGG + chr4.3:42245131-42245150 MS.gene062574:CDS 20.0%
!!! AACTGAATCTTTAAAAGAAA+AGG + chr4.3:42247590-42247609 MS.gene062574:CDS 20.0%
!!! AACTTTTCAAAATTACTACA+TGG + chr4.3:42246642-42246661 MS.gene062574:CDS 20.0%
!!! CTTTTCAATGTATCATTTTA+AGG + chr4.3:42245624-42245643 MS.gene062574:intron 20.0%
!!! TATATTTGTTATTGTAGATG+TGG + chr4.3:42245101-42245120 MS.gene062574:intron 20.0%
!!! TTTTATAACACATACTCAAA+AGG + chr4.3:42246474-42246493 MS.gene062574:intron 20.0%
! AAAAAAGTTGTGATATCAGT+TGG - chr4.3:42246871-42246890 None:intergenic 25.0%
! AAAACAGAAGAACAATATGA+AGG - chr4.3:42245233-42245252 None:intergenic 25.0%
! AGAAGACATCAAATTAATGA+CGG + chr4.3:42245454-42245473 MS.gene062574:intron 25.0%
! ATAAGGAGAAAACATACAAT+TGG - chr4.3:42246133-42246152 None:intergenic 25.0%
! ATGGTTTCAAAGAATTCAAA+AGG - chr4.3:42246536-42246555 None:intergenic 25.0%
! CAAATAGAAAAAGGTTAACA+TGG - chr4.3:42247818-42247837 None:intergenic 25.0%
! CATATACAACAACAAAATCA+TGG + chr4.3:42248189-42248208 MS.gene062574:intron 25.0%
! CATCTTTAGATTTCTGAATA+AGG - chr4.3:42245132-42245151 None:intergenic 25.0%
! CTTATTCAGAAATCTAAAGA+TGG + chr4.3:42245130-42245149 MS.gene062574:CDS 25.0%
! GAAACATTGATACTCATTAT+GGG + chr4.3:42246008-42246027 MS.gene062574:CDS 25.0%
! GAAATTATAACTTCTATGTG+TGG + chr4.3:42245924-42245943 MS.gene062574:intron 25.0%
! GCTTCAAAACAAATAGAAAA+AGG - chr4.3:42247827-42247846 None:intergenic 25.0%
! GTATTGAAAGGTTTGAAAAA+TGG + chr4.3:42248309-42248328 MS.gene062574:CDS 25.0%
! TAAATAGCTTGAAACTGAAA+GGG - chr4.3:42247249-42247268 None:intergenic 25.0%
! TATTCAGAAATCTAAAGATG+GGG + chr4.3:42245132-42245151 MS.gene062574:CDS 25.0%
! TCAAAAGGAGAAACAAAAAT+AGG - chr4.3:42248398-42248417 None:intergenic 25.0%
! TGTCATAATGGTATATAACA+CGG - chr4.3:42244930-42244949 None:intergenic 25.0%
! TTAATTCACCAAAACTCAAA+AGG - chr4.3:42248413-42248432 None:intergenic 25.0%
!! AAAAGAAAAGGTTGATTCTT+TGG + chr4.3:42247602-42247621 MS.gene062574:CDS 25.0%
!! AGTTTTCAAACTTAAAACTG+TGG + chr4.3:42245282-42245301 MS.gene062574:intron 25.0%
!! ATATTATGTTTAAGGCCATA+AGG + chr4.3:42247038-42247057 MS.gene062574:intron 25.0%
!! GGAGTATCAATTAATACATT+TGG + chr4.3:42249495-42249514 MS.gene062574:CDS 25.0%
!! TGTATGTTTTCTCCTTATAA+GGG + chr4.3:42246135-42246154 MS.gene062574:intron 25.0%
!! TTGTATGTTTTCTCCTTATA+AGG + chr4.3:42246134-42246153 MS.gene062574:intron 25.0%
!!! AAAGTTATTTTTCGTATGAC+AGG + chr4.3:42247536-42247555 MS.gene062574:intron 25.0%
!!! AAATTGTGTTTGTTTTGCTT+TGG + chr4.3:42244672-42244691 MS.gene062574:CDS 25.0%
!!! TATTTCCGAGAATTTTTTCA+GGG + chr4.3:42248027-42248046 MS.gene062574:intron 25.0%
!!! TTATTTCCGAGAATTTTTTC+AGG + chr4.3:42248026-42248045 MS.gene062574:intron 25.0%
!!! TTGAGATAGCTTTTTTTAAC+TGG + chr4.3:42247779-42247798 MS.gene062574:intron 25.0%
!!! TTTGAATTCTTTGAAACCAT+AGG + chr4.3:42246536-42246555 MS.gene062574:intron 25.0%
AAAAAAAGCTATCTCAACCT+TGG - chr4.3:42247776-42247795 None:intergenic 30.0%
AATGGAATTATGGGTAAACT+TGG + chr4.3:42245599-42245618 MS.gene062574:intron 30.0%
ACCATTATGACACTGATATA+TGG + chr4.3:42244938-42244957 MS.gene062574:intron 30.0%
ACTACTTATGGTACTCATTA+AGG + chr4.3:42247739-42247758 MS.gene062574:CDS 30.0%
AGAAAACATACAATTGGATC+AGG - chr4.3:42246127-42246146 None:intergenic 30.0%
AGAATTCAAAAGGTTGCAAT+CGG - chr4.3:42246526-42246545 None:intergenic 30.0%
ATACCTATTACACTTGTAAC+TGG + chr4.3:42248092-42248111 MS.gene062574:CDS 30.0%
ATGAAGTACATACACATACA+TGG - chr4.3:42245347-42245366 None:intergenic 30.0%
ATTCAGAAATCTAAAGATGG+GGG + chr4.3:42245133-42245152 MS.gene062574:CDS 30.0%
CAGTGTAAAAACATTAACAC+CGG - chr4.3:42249393-42249412 None:intergenic 30.0%
CCATTATGACACTGATATAT+GGG + chr4.3:42244939-42244958 MS.gene062574:intron 30.0%
CTAAATAGCTTGAAACTGAA+AGG - chr4.3:42247250-42247269 None:intergenic 30.0%
GAAGACATCAAATTAATGAC+GGG + chr4.3:42245455-42245474 MS.gene062574:intron 30.0%
GAATAAAATGCAACCAAAGA+GGG - chr4.3:42245719-42245738 None:intergenic 30.0%
GATGTTTGAACTTGTAACAA+TGG + chr4.3:42245078-42245097 MS.gene062574:intron 30.0%
GGAAACATTGATACTCATTA+TGG + chr4.3:42246007-42246026 MS.gene062574:CDS 30.0%
GGGAAGAAAAATTAAAGACT+AGG - chr4.3:42245678-42245697 None:intergenic 30.0%
GTGATATGAATTGCCATTAA+AGG - chr4.3:42247396-42247415 None:intergenic 30.0%
TCATAACTCGTTGAAATGAA+AGG - chr4.3:42246955-42246974 None:intergenic 30.0%
TCATCTTAAAGATTTGCACA+AGG + chr4.3:42247141-42247160 MS.gene062574:CDS 30.0%
TCCAAAGCTTGCAAATTTAA+TGG - chr4.3:42249262-42249281 None:intergenic 30.0%
TCCATTAAATTTGCAAGCTT+TGG + chr4.3:42249258-42249277 MS.gene062574:CDS 30.0%
TCTATGATCATAGGTAACAT+TGG - chr4.3:42244732-42244751 None:intergenic 30.0%
TGAATGGTTCATTATCAGTT+CGG - chr4.3:42245755-42245774 None:intergenic 30.0%
TGCTAAAACCTACATCAATT+GGG + chr4.3:42246036-42246055 MS.gene062574:CDS 30.0%
TGTCTCAATCAGTATCTAAA+AGG - chr4.3:42248988-42249007 None:intergenic 30.0%
TTAAGGTATATGAGTTTCCA+AGG + chr4.3:42247756-42247775 MS.gene062574:intron 30.0%
TTACTCCCTGAAAAAATTCT+CGG - chr4.3:42248035-42248054 None:intergenic 30.0%
TTAGATTTCTGAATAAGGTC+AGG - chr4.3:42245127-42245146 None:intergenic 30.0%
TTCAAACCTTTCAATACTAC+CGG - chr4.3:42248306-42248325 None:intergenic 30.0%
TTGTAAAATAGCGATTGTTG+TGG + chr4.3:42246749-42246768 MS.gene062574:intron 30.0%
TTTCAAGCTATTTAGTGTCA+TGG + chr4.3:42247255-42247274 MS.gene062574:intron 30.0%
TTTCCAGTTACAAGTGTAAT+AGG - chr4.3:42248098-42248117 None:intergenic 30.0%
TTTCTTCAGTAGACTAATGT+CGG + chr4.3:42248607-42248626 MS.gene062574:intron 30.0%
! ACTGACTCATGCAATTATAA+AGG + chr4.3:42248780-42248799 MS.gene062574:CDS 30.0%
! AGGACCTATAATTTTATCTC+AGG + chr4.3:42245848-42245867 MS.gene062574:CDS 30.0%
! ATCACACAGTTTCGTTTTAA+TGG + chr4.3:42246225-42246244 MS.gene062574:intron 30.0%
! ATTGTTGATGAAGATAATGC+AGG + chr4.3:42247847-42247866 MS.gene062574:CDS 30.0%
! GGTTTTTAATATGCATCATG+TGG + chr4.3:42248210-42248229 MS.gene062574:intron 30.0%
! GTACCAAAAGATATTTTCGA+GGG - chr4.3:42249096-42249115 None:intergenic 30.0%
! TAATAATACCTTTTGCACAG+TGG - chr4.3:42249346-42249365 None:intergenic 30.0%
! TCTTTGGTTGCATTTTATTC+CGG + chr4.3:42245719-42245738 MS.gene062574:CDS 30.0%
! TGATTGAGACTTATGTTTTC+TGG + chr4.3:42245164-42245183 MS.gene062574:CDS 30.0%
! TGTACCAAAAGATATTTTCG+AGG - chr4.3:42249097-42249116 None:intergenic 30.0%
! TTCCATACTCATTTTCAATC+TGG - chr4.3:42245991-42246010 None:intergenic 30.0%
!! GTTTCATTTTTATACACGAC+CGG + chr4.3:42249371-42249390 MS.gene062574:intron 30.0%
!! TACCAAAAGATATTTTCGAG+GGG - chr4.3:42249095-42249114 None:intergenic 30.0%
!!! ATTAAAGCGCATTAGTTTTC+AGG - chr4.3:42248935-42248954 None:intergenic 30.0%
!!! TAATGACGGGTTATGTATTT+TGG + chr4.3:42245468-42245487 MS.gene062574:intron 30.0%
!!! TTGTTTCTCCTTTTGAGTTT+TGG + chr4.3:42248402-42248421 MS.gene062574:intron 30.0%
!!! TTTGTTTTGCTTTGGTTTCT+TGG + chr4.3:42244680-42244699 MS.gene062574:CDS 30.0%
AACACTTACAATGTCTGTGA+TGG - chr4.3:42248846-42248865 None:intergenic 35.0%
AACCATAGGTTTCTTGCATT+TGG + chr4.3:42246550-42246569 MS.gene062574:intron 35.0%
AATTCAAAAGGTTGCAATCG+GGG - chr4.3:42246524-42246543 None:intergenic 35.0%
ACAGAAGAACAATATGAAGG+TGG - chr4.3:42245230-42245249 None:intergenic 35.0%
ACAGAATCAGAAAGAAAGGT+AGG + chr4.3:42249189-42249208 MS.gene062574:CDS 35.0%
ACATACATCTCTTCGAATTC+TGG + chr4.3:42248753-42248772 MS.gene062574:CDS 35.0%
ACATTGGAACAAAAAGAAGC+AGG - chr4.3:42244716-42244735 None:intergenic 35.0%
ACGTGCTACACAATTGTATA+TGG - chr4.3:42244860-42244879 None:intergenic 35.0%
AGATATTAGACAGCCCAAAT+GGG + chr4.3:42247117-42247136 MS.gene062574:CDS 35.0%
AGATCACCTGATTAGGATAA+GGG - chr4.3:42249236-42249255 None:intergenic 35.0%
AGATGTAATTGTTGGATCAG+TGG - chr4.3:42247197-42247216 None:intergenic 35.0%
ATACGCAATGTTGTCAATCA+CGG - chr4.3:42246813-42246832 None:intergenic 35.0%
ATGGTAATTAATCTCACACG+TGG + chr4.3:42246661-42246680 MS.gene062574:intron 35.0%
ATTACCTTGTACCAAGTCAA+AGG - chr4.3:42248549-42248568 None:intergenic 35.0%
CAACACTCTTGTATTGTTTG+AGG + chr4.3:42249056-42249075 MS.gene062574:CDS 35.0%
CAGATAGCTAAACCCTTATA+AGG - chr4.3:42246150-42246169 None:intergenic 35.0%
CATGTGCTGAATGGAATTAT+GGG + chr4.3:42245590-42245609 MS.gene062574:CDS 35.0%
CATTCAAAGCAGAAATGAAG+CGG + chr4.3:42245769-42245788 MS.gene062574:CDS 35.0%
CCCATATATCAGTGTCATAA+TGG - chr4.3:42244942-42244961 None:intergenic 35.0%
CTACAAATCAACCTTTGACT+TGG + chr4.3:42248535-42248554 MS.gene062574:CDS 35.0%
CTGACAAGAAACCAAAAATG+TGG + chr4.3:42246393-42246412 MS.gene062574:CDS 35.0%
CTGATAGAAGTGACTACTTA+TGG + chr4.3:42247727-42247746 MS.gene062574:CDS 35.0%
CTGCTAAAACCTACATCAAT+TGG + chr4.3:42246035-42246054 MS.gene062574:CDS 35.0%
CTTATAAGGGTTTAGCTATC+TGG + chr4.3:42246148-42246167 MS.gene062574:intron 35.0%
CTTGTATTGTTTGAGGAAAG+CGG + chr4.3:42249063-42249082 MS.gene062574:CDS 35.0%
GAATTCAAAAGGTTGCAATC+GGG - chr4.3:42246525-42246544 None:intergenic 35.0%
GAATTCGAAGAGATGTATGT+TGG - chr4.3:42248753-42248772 None:intergenic 35.0%
GACAATTGTAGACATCAACA+TGG - chr4.3:42246281-42246300 None:intergenic 35.0%
GGAATAAAATGCAACCAAAG+AGG - chr4.3:42245720-42245739 None:intergenic 35.0%
GGATACAGAATCAGAAAGAA+AGG + chr4.3:42249185-42249204 MS.gene062574:CDS 35.0%
TACCTATGATCATAGAGCAT+TGG + chr4.3:42244736-42244755 MS.gene062574:CDS 35.0%
TCACTGACACTTCAGATTAA+AGG + chr4.3:42245316-42245335 MS.gene062574:intron 35.0%
TCGATTCAGTATAGGTCAAA+AGG - chr4.3:42249432-42249451 None:intergenic 35.0%
TGCATACCATACTCATCAAT+GGG - chr4.3:42246988-42247007 None:intergenic 35.0%
TGCCAGATTGAAAATGAGTA+TGG + chr4.3:42245986-42246005 MS.gene062574:intron 35.0%
TGCTTCTTCACAAAGCTTTA+TGG - chr4.3:42247167-42247186 None:intergenic 35.0%
TGGTAATTAATCTCACACGT+GGG + chr4.3:42246662-42246681 MS.gene062574:intron 35.0%
TGGTTCATCACAAAACCTTA+TGG - chr4.3:42247056-42247075 None:intergenic 35.0%
TGTTGTACTCAATACTGCAA+AGG + chr4.3:42247457-42247476 MS.gene062574:CDS 35.0%
TTGCATACCATACTCATCAA+TGG - chr4.3:42246989-42247008 None:intergenic 35.0%
! AGATTTGGTTGGATTTGTGA+AGG + chr4.3:42245519-42245538 MS.gene062574:CDS 35.0%
! ATGGTTTTCCACAATTCTTG+AGG - chr4.3:42248827-42248846 None:intergenic 35.0%
! CAAAAATGTGGACTGAGAAT+TGG + chr4.3:42246405-42246424 MS.gene062574:CDS 35.0%
! CAATTCTCAGTCCACATTTT+TGG - chr4.3:42246407-42246426 None:intergenic 35.0%
! CCCATTTACAAAAGCATGAA+GGG - chr4.3:42247911-42247930 None:intergenic 35.0%
! CCCTTCATGCTTTTGTAAAT+GGG + chr4.3:42247908-42247927 MS.gene062574:CDS 35.0%
! CTTTGGTTGCATTTTATTCC+GGG + chr4.3:42245720-42245739 MS.gene062574:CDS 35.0%
! GAAAAGGTTGATTCTTTGGA+CGG + chr4.3:42247606-42247625 MS.gene062574:CDS 35.0%
! GCTTGGCAGTATAATTTTGA+AGG + chr4.3:42245490-42245509 MS.gene062574:intron 35.0%
! TAAAAAGCTCCATAGTTCTG+TGG - chr4.3:42248255-42248274 None:intergenic 35.0%
! TCCCATTTACAAAAGCATGA+AGG - chr4.3:42247912-42247931 None:intergenic 35.0%
! TTTGGTTTCTTGTCAGAGTT+TGG - chr4.3:42246389-42246408 None:intergenic 35.0%
!! AACGATCATCGATTCAGTAT+AGG - chr4.3:42249440-42249459 None:intergenic 35.0%
!! AATACAAGAGTGTTGCTATC+TGG - chr4.3:42249051-42249070 None:intergenic 35.0%
!! ATCTTTAAGATGACCCCATT+TGG - chr4.3:42247134-42247153 None:intergenic 35.0%
!! CAAGTCAAAGGTTGATTTGT+AGG - chr4.3:42248537-42248556 None:intergenic 35.0%
!! CAGTATAATTTTGAAGGCAG+GGG + chr4.3:42245496-42245515 MS.gene062574:intron 35.0%
!! CTCTAAAATAGTACCATGGA+GGG + chr4.3:42246902-42246921 MS.gene062574:intron 35.0%
!! CTTGCTCTAAAATAGTACCA+TGG + chr4.3:42246898-42246917 MS.gene062574:intron 35.0%
!! GCAGTATAATTTTGAAGGCA+GGG + chr4.3:42245495-42245514 MS.gene062574:intron 35.0%
!! GTATTTTTGTGAATGCAGGT+TGG + chr4.3:42248444-42248463 MS.gene062574:intron 35.0%
!! TCTTTAAGATGACCCCATTT+GGG - chr4.3:42247133-42247152 None:intergenic 35.0%
!!! ATTTTTTCAGGGAGTAAAGC+CGG + chr4.3:42248038-42248057 MS.gene062574:intron 35.0%
AAAGAGGGAAACCACTGTTT+AGG - chr4.3:42245704-42245723 None:intergenic 40.0%
AATCTCTATGCATCACAAGG+AGG + chr4.3:42245828-42245847 MS.gene062574:CDS 40.0%
AATTTGTAGGTCTGCCTAGT+GGG + chr4.3:42248478-42248497 MS.gene062574:CDS 40.0%
ACATTTGGAAATCCATGCAG+AGG + chr4.3:42249510-42249529 MS.gene062574:CDS 40.0%
ACTAACTTTGGTCGAACAAC+CGG + chr4.3:42246925-42246944 MS.gene062574:CDS 40.0%
ACTCGAGCAAATAAACACGA+CGG + chr4.3:42247704-42247723 MS.gene062574:CDS 40.0%
ACTTGTGGAAACTACAACCA+CGG + chr4.3:42249294-42249313 MS.gene062574:CDS 40.0%
AGCAGAAATGAAGCGGTTTA+CGG + chr4.3:42245776-42245795 MS.gene062574:CDS 40.0%
AGGGATTCAATATGAAGGAC+AGG - chr4.3:42247880-42247899 None:intergenic 40.0%
AGTACAACATTCTTGCAGTC+TGG - chr4.3:42247446-42247465 None:intergenic 40.0%
AGTGCTACGAGGATAATGAA+TGG - chr4.3:42244798-42244817 None:intergenic 40.0%
ATGGAAGAGATCACCTGATT+AGG - chr4.3:42249243-42249262 None:intergenic 40.0%
ATTACCTCAAGATTTGGACC+AGG - chr4.3:42247220-42247239 None:intergenic 40.0%
ATTCATATCACTTGCCTGGA+TGG + chr4.3:42247405-42247424 MS.gene062574:CDS 40.0%
CATAGGTTTCTTGCATTTGG+AGG + chr4.3:42246553-42246572 MS.gene062574:intron 40.0%
CCAAATCTTGAGGTAATCAG+AGG + chr4.3:42247223-42247242 MS.gene062574:intron 40.0%
CCTCTGATTACCTCAAGATT+TGG - chr4.3:42247226-42247245 None:intergenic 40.0%
CCTGATGCATTCACAAAATC+TGG + chr4.3:42247678-42247697 MS.gene062574:CDS 40.0%
CTCCAAATGCAAGAAACCTA+TGG - chr4.3:42246555-42246574 None:intergenic 40.0%
CTGAATCGATGATCGTTAAC+AGG + chr4.3:42249443-42249462 MS.gene062574:intron 40.0%
GACCAATGCTCTATGATCAT+AGG - chr4.3:42244741-42244760 None:intergenic 40.0%
GACCTACAAATTCACCTTGA+AGG - chr4.3:42248470-42248489 None:intergenic 40.0%
GAGAAAAGACAAGAAACCTG+AGG - chr4.3:42244821-42244840 None:intergenic 40.0%
GAGAATCTCTATGCATCACA+AGG + chr4.3:42245825-42245844 MS.gene062574:CDS 40.0%
GAGATATTAGACAGCCCAAA+TGG + chr4.3:42247116-42247135 MS.gene062574:CDS 40.0%
GAGATCACCTGATTAGGATA+AGG - chr4.3:42249237-42249256 None:intergenic 40.0%
GAGTTTAACAGTGGGATTAC+AGG + chr4.3:42248136-42248155 MS.gene062574:CDS 40.0%
GATATTAGACAGCCCAAATG+GGG + chr4.3:42247118-42247137 MS.gene062574:CDS 40.0%
GATCCAACAATTACATCTCC+TGG + chr4.3:42247199-42247218 MS.gene062574:CDS 40.0%
GATCTCCTGAGTTTAACAGT+GGG + chr4.3:42248128-42248147 MS.gene062574:CDS 40.0%
GATGCAACGGTAACCTTTAA+TGG + chr4.3:42247380-42247399 MS.gene062574:CDS 40.0%
GCATGTGCTGAATGGAATTA+TGG + chr4.3:42245589-42245608 MS.gene062574:CDS 40.0%
GGATCGAGCAGTTGTAATAT+TGG + chr4.3:42249474-42249493 MS.gene062574:CDS 40.0%
GTAATCCCACTGTTAAACTC+AGG - chr4.3:42248136-42248155 None:intergenic 40.0%
GTCCTTCATATTGAATCCCT+TGG + chr4.3:42247880-42247899 MS.gene062574:CDS 40.0%
TAAACAGTGGTTTCCCTCTT+TGG + chr4.3:42245703-42245722 MS.gene062574:intron 40.0%
TCAGTTCGGAACTTAATTCC+CGG - chr4.3:42245741-42245760 None:intergenic 40.0%
TCCAAATGCCTCAAGAATTG+TGG + chr4.3:42248816-42248835 MS.gene062574:CDS 40.0%
TGATCTCCTGAGTTTAACAG+TGG + chr4.3:42248127-42248146 MS.gene062574:CDS 40.0%
TTTGGTTGGATTTGTGAAGG+CGG + chr4.3:42245522-42245541 MS.gene062574:CDS 40.0%
TTTGTAAATGGGAAGCTTGC+TGG + chr4.3:42247919-42247938 MS.gene062574:CDS 40.0%
! AATATGCTACTGGTTGATGC+AGG + chr4.3:42247094-42247113 MS.gene062574:intron 40.0%
! AGATCTTCCACTGGTCTATA+AGG - chr4.3:42246586-42246605 None:intergenic 40.0%
! ATGTTGTCAATCACGGATTG+TGG - chr4.3:42246806-42246825 None:intergenic 40.0%
! CCAGATTTTGTGAATGCATC+AGG - chr4.3:42247681-42247700 None:intergenic 40.0%
! CGCTTCATTTCTGCTTTGAA+TGG - chr4.3:42245771-42245790 None:intergenic 40.0%
! GACCCCTCGAAAATATCTTT+TGG + chr4.3:42249090-42249109 MS.gene062574:CDS 40.0%
! GCCCTTCATGCTTTTGTAAA+TGG + chr4.3:42247907-42247926 MS.gene062574:CDS 40.0%
! GGAGCTTTTTATGACACAGT+GGG + chr4.3:42248264-42248283 MS.gene062574:CDS 40.0%
! TCCACAATTCTTGAGGCATT+TGG - chr4.3:42248820-42248839 None:intergenic 40.0%
! TGGAGCTTTTTATGACACAG+TGG + chr4.3:42248263-42248282 MS.gene062574:CDS 40.0%
! TTACAAAAGCATGAAGGGCA+TGG - chr4.3:42247906-42247925 None:intergenic 40.0%
! TTTTACACGCCACAGAACTA+TGG + chr4.3:42248243-42248262 MS.gene062574:intron 40.0%
! TTTTTATGACACAGTGGGTG+CGG + chr4.3:42248269-42248288 MS.gene062574:CDS 40.0%
!! AGTTGGATTAGTGAACCTGT+CGG + chr4.3:42247645-42247664 MS.gene062574:CDS 40.0%
!! CATAGAGCATTGGTCATTGA+TGG + chr4.3:42244746-42244765 MS.gene062574:CDS 40.0%
!! GCTCTAAAATAGTACCATGG+AGG + chr4.3:42246901-42246920 MS.gene062574:intron 40.0%
!! GGCAGTATAATTTTGAAGGC+AGG + chr4.3:42245494-42245513 MS.gene062574:intron 40.0%
!! GGCTGTATTTTTGTGAATGC+AGG + chr4.3:42248440-42248459 MS.gene062574:intron 40.0%
!! TCAACCTTTGACTTGGTACA+AGG + chr4.3:42248542-42248561 MS.gene062574:CDS 40.0%
!! TGGACATATCAGGTTAGTCT+CGG + chr4.3:42248360-42248379 MS.gene062574:intron 40.0%
!! TTGATGTAGGTTTTAGCAGC+AGG - chr4.3:42246034-42246053 None:intergenic 40.0%
!!! ACGGGTTATGTATTTTGGCT+TGG + chr4.3:42245473-42245492 MS.gene062574:intron 40.0%
AAACGCAGGGTTCTTATGTC+TGG + chr4.3:42244770-42244789 MS.gene062574:CDS 45.0%
ACCTGTAGACACGTGGAATT+CGG + chr4.3:42249164-42249183 MS.gene062574:CDS 45.0%
ACCTTTCAATACTACCGGAC+CGG - chr4.3:42248301-42248320 None:intergenic 45.0%
AGGTGGAAAAGAACAGAACC+TGG - chr4.3:42245213-42245232 None:intergenic 45.0%
ATCTCCTGGTCCAAATCTTG+AGG + chr4.3:42247213-42247232 MS.gene062574:CDS 45.0%
ATGGCTGCATCTCTTGATAC+AGG + chr4.3:42246067-42246086 MS.gene062574:CDS 45.0%
CAGACTGCAGTTTACAAGAC+AGG + chr4.3:42247317-42247336 MS.gene062574:intron 45.0%
CAGGTCTTTATGTGCATCTC+CGG + chr4.3:42245554-42245573 MS.gene062574:CDS 45.0%
CATCAATTGGGCAGCATCAA+TGG + chr4.3:42246048-42246067 MS.gene062574:CDS 45.0%
CGTTGAAATGAAAGGTCCAC+CGG - chr4.3:42246947-42246966 None:intergenic 45.0%
CTCACAGCAATGGACATATC+AGG + chr4.3:42248350-42248369 MS.gene062574:CDS 45.0%
CTCTTTGTTACTCCTCTGCA+TGG - chr4.3:42249525-42249544 None:intergenic 45.0%
CTGATATGTCCATTGCTGTG+AGG - chr4.3:42248352-42248371 None:intergenic 45.0%
CTTTATGTGCATCTCCGGAT+CGG + chr4.3:42245559-42245578 MS.gene062574:CDS 45.0%
GAAAAAGGTTAACATGGGCG+CGG - chr4.3:42247812-42247831 None:intergenic 45.0%
GAATTTGTAGGTCTGCCTAG+TGG + chr4.3:42248477-42248496 MS.gene062574:CDS 45.0%
GATGCACCCATTGATGAGTA+TGG + chr4.3:42246979-42246998 MS.gene062574:CDS 45.0%
GCAAAAGCAAGATCTTCCAC+TGG - chr4.3:42246595-42246614 None:intergenic 45.0%
GGAAACCACTGTTTAGGCAA+GGG - chr4.3:42245698-42245717 None:intergenic 45.0%
GGAATGCCCTTATCCTAATC+AGG + chr4.3:42249227-42249246 MS.gene062574:CDS 45.0%
GGACCAGGAGATGTAATTGT+TGG - chr4.3:42247205-42247224 None:intergenic 45.0%
GGCAATTCATATCACTTGCC+TGG + chr4.3:42247401-42247420 MS.gene062574:CDS 45.0%
GGCCAAGGGATTCAATATGA+AGG - chr4.3:42247885-42247904 None:intergenic 45.0%
GGCCTTCAAGGTGAATTTGT+AGG + chr4.3:42248465-42248484 MS.gene062574:CDS 45.0%
GTATTGTTTGAGGAAAGCGG+AGG + chr4.3:42249066-42249085 MS.gene062574:CDS 45.0%
TACCATGGAGGGACTAACTT+TGG + chr4.3:42246913-42246932 MS.gene062574:CDS 45.0%
TGATGCTGCCCAATTGATGT+AGG - chr4.3:42246047-42246066 None:intergenic 45.0%
TGGGCAGTGTTGTCAAATAG+CGG + chr4.3:42246681-42246700 MS.gene062574:intron 45.0%
TTCCATTCAGCACATGCGTA+TGG - chr4.3:42245586-42245605 None:intergenic 45.0%
TTCTTCCCTTGCCTAAACAG+TGG + chr4.3:42245690-42245709 MS.gene062574:intron 45.0%
! ATGTGGACTGAGAATTGGAG+TGG + chr4.3:42246410-42246429 MS.gene062574:CDS 45.0%
! GTTAGTCTCGGCTTGACTTA+AGG + chr4.3:42248372-42248391 MS.gene062574:intron 45.0%
! GTTCAAGTTCAGGATGGAGT+TGG + chr4.3:42247628-42247647 MS.gene062574:CDS 45.0%
! TCTTTGGACGGTTCAAGTTC+AGG + chr4.3:42247618-42247637 MS.gene062574:CDS 45.0%
! TTTTATGACACAGTGGGTGC+GGG + chr4.3:42248270-42248289 MS.gene062574:CDS 45.0%
!! AAATGGGAAGCTTGCTGGTA+AGG + chr4.3:42247924-42247943 MS.gene062574:intron 45.0%
!! TTTTGAAGGCAGGGGAGATT+TGG + chr4.3:42245504-42245523 MS.gene062574:CDS 45.0%
!!! TTTATATATTTAAATTTTAG+TGG - chr4.3:42247076-42247095 None:intergenic 5.0%
AAAGGCGAAGCTTGGGTGAA+CGG + chr4.3:42248705-42248724 MS.gene062574:CDS 50.0%
AACTTTGGTCGAACAACCGG+TGG + chr4.3:42246928-42246947 MS.gene062574:CDS 50.0%
AAGATGCTCACAGACCATCC+AGG - chr4.3:42247422-42247441 None:intergenic 50.0%
ACAACTGCTCGATCCAATGC+AGG - chr4.3:42249469-42249488 None:intergenic 50.0%
CACTGTCCAACATTCCCACT+AGG - chr4.3:42248495-42248514 None:intergenic 50.0%
CTAGTGGGAATGTTGGACAG+TGG + chr4.3:42248493-42248512 MS.gene062574:CDS 50.0%
CTCTTGATACAGGTGTTCCC+TGG + chr4.3:42246077-42246096 MS.gene062574:CDS 50.0%
CTTCACGTTTCCGTAGTTGC+CGG - chr4.3:42248060-42248079 None:intergenic 50.0%
GAATTCCACGTGTCTACAGG+TGG - chr4.3:42249165-42249184 None:intergenic 50.0%
GACAAAGCATAGGGCGATAC+TGG + chr4.3:42248727-42248746 MS.gene062574:CDS 50.0%
GACCAAAGTTAGTCCCTCCA+TGG - chr4.3:42246918-42246937 None:intergenic 50.0%
GATATCATGTACCGCGATCG+TGG + chr4.3:42249019-42249038 MS.gene062574:intron 50.0%
GATCGTTAACAGGCCTGCAT+TGG + chr4.3:42249453-42249472 MS.gene062574:intron 50.0%
GATGGGAAAAGGCGAAGCTT+GGG + chr4.3:42248698-42248717 MS.gene062574:CDS 50.0%
GATTGCAACCGGGTTACTTC+CGG - chr4.3:42248667-42248686 None:intergenic 50.0%
GCCTGGTTGCACATAATCCA+GGG - chr4.3:42246097-42246116 None:intergenic 50.0%
GCGGTTTACGGCTAAGATTG+TGG + chr4.3:42245788-42245807 MS.gene062574:CDS 50.0%
GGACTGAGAATTGGAGTGGA+TGG + chr4.3:42246414-42246433 MS.gene062574:CDS 50.0%
GGCTCTATCCACTGTGCAAA+AGG + chr4.3:42249335-42249354 MS.gene062574:CDS 50.0%
GGGAAACCACTGTTTAGGCA+AGG - chr4.3:42245699-42245718 None:intergenic 50.0%
GGGTGAACGGACAAAGCATA+GGG + chr4.3:42248718-42248737 MS.gene062574:CDS 50.0%
GTCCATACGCATGTGCTGAA+TGG + chr4.3:42245581-42245600 MS.gene062574:CDS 50.0%
TAGTTTCCACAAGTCCCACG+AGG - chr4.3:42249288-42249307 None:intergenic 50.0%
TCCCTGGATTATGTGCAACC+AGG + chr4.3:42246093-42246112 MS.gene062574:CDS 50.0%
TCCGAATTCCACGTGTCTAC+AGG - chr4.3:42249168-42249187 None:intergenic 50.0%
TCGATCTCTCCTCACAGCAA+TGG + chr4.3:42248340-42248359 MS.gene062574:CDS 50.0%
TCGCGGTACATGATATCTGC+AGG - chr4.3:42249016-42249035 None:intergenic 50.0%
TGCCTGGTTGCACATAATCC+AGG - chr4.3:42246098-42246117 None:intergenic 50.0%
TGCTGTGCCTTATAGACCAG+TGG + chr4.3:42246576-42246595 MS.gene062574:CDS 50.0%
TGGGTGAACGGACAAAGCAT+AGG + chr4.3:42248717-42248736 MS.gene062574:CDS 50.0%
TTATCCTCGTAGCACTCCTC+AGG + chr4.3:42244802-42244821 MS.gene062574:CDS 50.0%
TTGGATCAGGTGCATTTGCC+TGG - chr4.3:42246114-42246133 None:intergenic 50.0%
TTTATGACACAGTGGGTGCG+GGG + chr4.3:42248271-42248290 MS.gene062574:CDS 50.0%
! ACCGGTCCGGTAGTATTGAA+AGG + chr4.3:42248297-42248316 MS.gene062574:CDS 50.0%
! GGTCATTGATGGCAAACGCA+GGG + chr4.3:42244757-42244776 MS.gene062574:CDS 50.0%
! TGGACGGTTCAAGTTCAGGA+TGG + chr4.3:42247622-42247641 MS.gene062574:CDS 50.0%
! TGGTCATTGATGGCAAACGC+AGG + chr4.3:42244756-42244775 MS.gene062574:CDS 50.0%
!! TCAGGCGTTGAAATACCGAC+AGG - chr4.3:42247663-42247682 None:intergenic 50.0%
!! TGAATGCAGGTTGGCCTTCA+AGG + chr4.3:42248453-42248472 MS.gene062574:intron 50.0%
!! TTTCTGGAACCTGCACGAAC+CGG + chr4.3:42245180-42245199 MS.gene062574:CDS 50.0%
AACAGAACCTGGCCTCGAAC+CGG - chr4.3:42245202-42245221 None:intergenic 55.0%
CACATGCGTATGGACCGATC+CGG - chr4.3:42245576-42245595 None:intergenic 55.0%
CATCGGCACGTCTGATGCAA+CGG + chr4.3:42247367-42247386 MS.gene062574:CDS 55.0%
CCCGTGAAGTCGATTGCAAC+CGG - chr4.3:42248678-42248697 None:intergenic 55.0%
CCGTGAAGTCGATTGCAACC+GGG - chr4.3:42248677-42248696 None:intergenic 55.0%
CGGAAACGTGAAGGTCAACG+TGG + chr4.3:42248067-42248086 MS.gene062574:CDS 55.0%
CGGAAGCTGCAGCAGCAATA+AGG + chr4.3:42249314-42249333 MS.gene062574:CDS 55.0%
CGGCAACTACGGAAACGTGA+AGG + chr4.3:42248058-42248077 MS.gene062574:CDS 55.0%
GACTTCACGGGGATGGGAAA+AGG + chr4.3:42248687-42248706 MS.gene062574:CDS 55.0%
GGATGGGAAAAGGCGAAGCT+TGG + chr4.3:42248697-42248716 MS.gene062574:CDS 55.0%
GGGAGTAAAGCCGGCAACTA+CGG + chr4.3:42248047-42248066 MS.gene062574:intron 55.0%
GGGCATTCCAGTGACAGTAC+AGG - chr4.3:42249216-42249235 None:intergenic 55.0%
GGTAGGTCCTGTACTGTCAC+TGG + chr4.3:42249206-42249225 MS.gene062574:CDS 55.0%
GGTCTGCCTAGTGGGAATGT+TGG + chr4.3:42248486-42248505 MS.gene062574:CDS 55.0%
TATTGCTGCTGCAGCTTCCG+TGG - chr4.3:42249314-42249333 None:intergenic 55.0%
TCCACGTGTCTACAGGTGGA+GGG - chr4.3:42249161-42249180 None:intergenic 55.0%
TCCGCCTTCCTTGCCAACAT+CGG + chr4.3:42247350-42247369 MS.gene062574:CDS 55.0%
TTCCACGTGTCTACAGGTGG+AGG - chr4.3:42249162-42249181 None:intergenic 55.0%
! AAGCATGAAGGGCATGGCCA+AGG - chr4.3:42247900-42247919 None:intergenic 55.0%
! AGCATGAAGGGCATGGCCAA+GGG - chr4.3:42247899-42247918 None:intergenic 55.0%
! CCCGGTTGCAATCGACTTCA+CGG + chr4.3:42248674-42248693 MS.gene062574:CDS 55.0%
! CCGCTGAAAAAAGCGCGCAA+CGG - chr4.3:42246617-42246636 None:intergenic 55.0%
! CCGGTTGCAATCGACTTCAC+GGG + chr4.3:42248675-42248694 MS.gene062574:CDS 55.0%
! CGGTTGCAATCGACTTCACG+GGG + chr4.3:42248676-42248695 MS.gene062574:CDS 55.0%
! GAAGGCAGGGGAGATTTGGT+TGG + chr4.3:42245508-42245527 MS.gene062574:CDS 55.0%
! GCAATCGACTTCACGGGGAT+GGG + chr4.3:42248681-42248700 MS.gene062574:CDS 55.0%
! TCTGGCTTCAACCACGATCG+CGG - chr4.3:42249033-42249052 None:intergenic 55.0%
! TGCAATCGACTTCACGGGGA+TGG + chr4.3:42248680-42248699 MS.gene062574:CDS 55.0%
! TGCATCAGACGTGCCGATGT+TGG - chr4.3:42247366-42247385 None:intergenic 55.0%
!! CAAGCTTTGGAACGCCTCGT+GGG + chr4.3:42249271-42249290 MS.gene062574:CDS 55.0%
!! GAAACCTGAGGAGTGCTACG+AGG - chr4.3:42244809-42244828 None:intergenic 55.0%
!!! CCGTTGCGCGCTTTTTTCAG+CGG + chr4.3:42246614-42246633 MS.gene062574:CDS 55.0%
!!! CGTTGCGCGCTTTTTTCAGC+GGG + chr4.3:42246615-42246634 MS.gene062574:CDS 55.0%
!!! GTTGCGCGCTTTTTTCAGCG+GGG + chr4.3:42246616-42246635 MS.gene062574:CDS 55.0%
ACCCTCCACCTGTAGACACG+TGG + chr4.3:42249157-42249176 MS.gene062574:CDS 60.0%
GCAACCGGGTTACTTCCGGA+GGG - chr4.3:42248663-42248682 None:intergenic 60.0%
GCCGATGTTGGCAAGGAAGG+CGG - chr4.3:42247354-42247373 None:intergenic 60.0%
TGCAACCGGGTTACTTCCGG+AGG - chr4.3:42248664-42248683 None:intergenic 60.0%
! CAGACGTGCCGATGTTGGCA+AGG - chr4.3:42247361-42247380 None:intergenic 60.0%
! CGTGCCGATGTTGGCAAGGA+AGG - chr4.3:42247357-42247376 None:intergenic 60.0%
!! AACCTGCACGAACCGGTTCG+AGG + chr4.3:42245187-42245206 MS.gene062574:CDS 60.0%
!! GCAAGCTTTGGAACGCCTCG+TGG + chr4.3:42249270-42249289 MS.gene062574:CDS 60.0%
ACAGTGGGTGCGGGGATCAC+CGG + chr4.3:42248279-42248298 MS.gene062574:CDS 65.0%
GGAACGCCTCGTGGGACTTG+TGG + chr4.3:42249279-42249298 MS.gene062574:CDS 65.0%
GTGAAGGCGGTAGCAGCAGC+AGG + chr4.3:42245535-42245554 MS.gene062574:CDS 65.0%
!!! GCGCGCTTTTTTCAGCGGGG+TGG + chr4.3:42246619-42246638 MS.gene062574:CDS 65.0%
!! GCACGAACCGGTTCGAGGCC+AGG + chr4.3:42245192-42245211 MS.gene062574:CDS 70.0%
!! GGCCTCGAACCGGTTCGTGC+AGG - chr4.3:42245192-42245211 None:intergenic 70.0%
GGGTGCGGGGATCACCGGTC+CGG + chr4.3:42248284-42248303 MS.gene062574:CDS 75.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 42244659 42249572 42244659 ID=MS.gene062574
chr4.3 mRNA 42244659 42249572 42244659 ID=MS.gene062574.t1;Parent=MS.gene062574
chr4.3 exon 42244659 42244823 42244659 ID=MS.gene062574.t1.exon1;Parent=MS.gene062574.t1
chr4.3 CDS 42244659 42244823 42244659 ID=cds.MS.gene062574.t1;Parent=MS.gene062574.t1
chr4.3 exon 42245118 42245213 42245118 ID=MS.gene062574.t1.exon2;Parent=MS.gene062574.t1
chr4.3 CDS 42245118 42245213 42245118 ID=cds.MS.gene062574.t1;Parent=MS.gene062574.t1
chr4.3 exon 42245499 42245611 42245499 ID=MS.gene062574.t1.exon3;Parent=MS.gene062574.t1
chr4.3 CDS 42245499 42245611 42245499 ID=cds.MS.gene062574.t1;Parent=MS.gene062574.t1
chr4.3 exon 42245710 42245869 42245710 ID=MS.gene062574.t1.exon4;Parent=MS.gene062574.t1
chr4.3 CDS 42245710 42245869 42245710 ID=cds.MS.gene062574.t1;Parent=MS.gene062574.t1
chr4.3 exon 42245992 42246135 42245992 ID=MS.gene062574.t1.exon5;Parent=MS.gene062574.t1
chr4.3 CDS 42245992 42246135 42245992 ID=cds.MS.gene062574.t1;Parent=MS.gene062574.t1
chr4.3 exon 42246347 42246435 42246347 ID=MS.gene062574.t1.exon6;Parent=MS.gene062574.t1
chr4.3 CDS 42246347 42246435 42246347 ID=cds.MS.gene062574.t1;Parent=MS.gene062574.t1
chr4.3 exon 42246558 42246663 42246558 ID=MS.gene062574.t1.exon7;Parent=MS.gene062574.t1
chr4.3 CDS 42246558 42246663 42246558 ID=cds.MS.gene062574.t1;Parent=MS.gene062574.t1
chr4.3 exon 42246913 42247000 42246913 ID=MS.gene062574.t1.exon8;Parent=MS.gene062574.t1
chr4.3 CDS 42246913 42247000 42246913 ID=cds.MS.gene062574.t1;Parent=MS.gene062574.t1
chr4.3 exon 42247116 42247234 42247116 ID=MS.gene062574.t1.exon9;Parent=MS.gene062574.t1
chr4.3 CDS 42247116 42247234 42247116 ID=cds.MS.gene062574.t1;Parent=MS.gene062574.t1
chr4.3 exon 42247320 42247478 42247320 ID=MS.gene062574.t1.exon10;Parent=MS.gene062574.t1
chr4.3 CDS 42247320 42247478 42247320 ID=cds.MS.gene062574.t1;Parent=MS.gene062574.t1
chr4.3 exon 42247558 42247760 42247558 ID=MS.gene062574.t1.exon11;Parent=MS.gene062574.t1
chr4.3 CDS 42247558 42247760 42247558 ID=cds.MS.gene062574.t1;Parent=MS.gene062574.t1
chr4.3 exon 42247846 42247940 42247846 ID=MS.gene062574.t1.exon12;Parent=MS.gene062574.t1
chr4.3 CDS 42247846 42247940 42247846 ID=cds.MS.gene062574.t1;Parent=MS.gene062574.t1
chr4.3 exon 42248048 42248157 42248048 ID=MS.gene062574.t1.exon13;Parent=MS.gene062574.t1
chr4.3 CDS 42248048 42248157 42248048 ID=cds.MS.gene062574.t1;Parent=MS.gene062574.t1
chr4.3 exon 42248258 42248371 42248258 ID=MS.gene062574.t1.exon14;Parent=MS.gene062574.t1
chr4.3 CDS 42248258 42248371 42248258 ID=cds.MS.gene062574.t1;Parent=MS.gene062574.t1
chr4.3 exon 42248462 42248563 42248462 ID=MS.gene062574.t1.exon15;Parent=MS.gene062574.t1
chr4.3 CDS 42248462 42248563 42248462 ID=cds.MS.gene062574.t1;Parent=MS.gene062574.t1
chr4.3 exon 42248645 42248856 42248645 ID=MS.gene062574.t1.exon16;Parent=MS.gene062574.t1
chr4.3 CDS 42248645 42248856 42248645 ID=cds.MS.gene062574.t1;Parent=MS.gene062574.t1
chr4.3 exon 42249020 42249356 42249020 ID=MS.gene062574.t1.exon17;Parent=MS.gene062574.t1
chr4.3 CDS 42249020 42249356 42249020 ID=cds.MS.gene062574.t1;Parent=MS.gene062574.t1
chr4.3 exon 42249465 42249572 42249465 ID=MS.gene062574.t1.exon18;Parent=MS.gene062574.t1
chr4.3 CDS 42249465 42249572 42249465 ID=cds.MS.gene062574.t1;Parent=MS.gene062574.t1
Gene Sequence

>MS.gene062574

ATGAGAGGGACACAAATTGTGTTTGTTTTGCTTTGGTTTCTTGGTGTTTATGTTCCTGCTTCTTTTTGTTCCAATGTTACCTATGATCATAGAGCATTGGTCATTGATGGCAAACGCAGGGTTCTTATGTCTGGTTCCATTCATTATCCTCGTAGCACTCCTCAGGTTTCTTGTCTTTTCTCTTTATGTGTTTTTTTTCCATATACAATTGTGTAGCACGTAACACTGACACTTCAGATTGAAAATGTGTCATGTGTTTAACATTTGTCCGTGTTATATACCATTATGACACTGATATATGGGATTGCATTTAATGACATTTATTTTTTTTCTTCTAATTATTATTACAATGTTTACGTGTCAGTGTTGTGTTTGTGTTTGTGCTTCATAGATATACAGTACTTATTCAATTTGTGTTTGATGTTTGAACTTGTAACAATGGTATATTTGTTATTGTAGATGTGGCCTGACCTTATTCAGAAATCTAAAGATGGGGGAATTGATGTGATTGAGACTTATGTTTTCTGGAACCTGCACGAACCGGTTCGAGGCCAGGTTCTGTTCTTTTCCACCTTCATATTGTTCTTCTGTTTTTTCTTTACTATCTTTTACATTGCATTGTGAGTTTTCAAACTTAAAACTGTGGAAGATTACGTATCACTGACACTTCAGATTAAAGGCGTGTCCATGTATGTGTATGTACTTCATAGATAGAAGATCATTTAGATATTTATTAGATTGTAATTTTAGAACTTAAAAGCATGAATTTGTGAAGACAAGTTTTCAATTTCTATCAGAAGACATCAAATTAATGACGGGTTATGTATTTTGGCTTGGCAGTATAATTTTGAAGGCAGGGGAGATTTGGTTGGATTTGTGAAGGCGGTAGCAGCAGCAGGTCTTTATGTGCATCTCCGGATCGGTCCATACGCATGTGCTGAATGGAATTATGGGTAAACTTGGATCTTTTCAATGTATCATTTTAAGGGAAGTTTTATAAAAGTATCTAATTCAGTCCTAGTCTTTAATTTTTCTTCCCTTGCCTAAACAGTGGTTTCCCTCTTTGGTTGCATTTTATTCCGGGAATTAAGTTCCGAACTGATAATGAACCATTCAAAGCAGAAATGAAGCGGTTTACGGCTAAGATTGTGGATTTGATGAAGCAAGAGAATCTCTATGCATCACAAGGAGGACCTATAATTTTATCTCAGGTTTTGTTCTCTTAAAATCATAATAAGTACATGCCAATTTTTCATTATTTTTGTGAAATTATAACTTCTATGTGTGGATGCATAGTTATTTAATGCAAAAACTTTTTATTTTTTTATGCCAGATTGAAAATGAGTATGGAAACATTGATACTCATTATGGGCCTGCTGCTAAAACCTACATCAATTGGGCAGCATCAATGGCTGCATCTCTTGATACAGGTGTTCCCTGGATTATGTGCAACCAGGCAAATGCACCTGATCCAATTGTATGTTTTCTCCTTATAAGGGTTTAGCTATCTGGATTATCATCTTTCTTTTTTTAGTAAAAGGAAAAAGAATAGTTCGCTCTGTGCTTATCACACAGTTTCGTTTTAATGGATTATCTATCTTCACGAGAGAGCTATCTTACCATGTTGATGTCTACAATTGTCCTACTTAATTTTTAATTTTCATAATATTTTATCTTAAATCTTGCAGATTAACACATGCAATAATTTTTATTGTGATCAATTCACACCAAACTCTGACAAGAAACCAAAAATGTGGACTGAGAATTGGAGTGGATGGTCAGTAGTGACCTTTTCTATTTAAATCATTTTGTTATTTTTATAACACATACTCAAAAGGTATGATCTGATTTAACTCTCTTTTCCCCGATTGCAACCTTTTGAATTCTTTGAAACCATAGGTTTCTTGCATTTGGAGGTGCTGTGCCTTATAGACCAGTGGAAGATCTTGCTTTTGCCGTTGCGCGCTTTTTTCAGCGGGGTGGAACTTTTCAAAATTACTACATGGTAATTAATCTCACACGTGGGCAGTGTTGTCAAATAGCGGTGCTACAGCTTAGTGAGATTTGAACAAGTTATTTATTACAAATCATTGTAAAATAGCGATTGTTGTGGCTCATAGCTGAACTTGTAGAACTGCTATTTTCCACAATCCGTGATTGACAACATTGCGTATTATTTAAGCTCAAAGTTACTATTCAAGATAGTAAACCAACTGATATCACAACTTTTTTTTCGTTGCTTGCTCTAAAATAGTACCATGGAGGGACTAACTTTGGTCGAACAACCGGTGGACCTTTCATTTCAACGAGTTATGATTATGATGCACCCATTGATGAGTATGGTATGCAATCTTTCGACTTCCATATTTATTTTGAACAATATTATGTTTAAGGCCATAAGGTTTTGTGATGAACCACTAAAATTTAAATATATAAATATGCTACTGGTTGATGCAGGAGATATTAGACAGCCCAAATGGGGTCATCTTAAAGATTTGCACAAGGCCATAAAGCTTTGTGAAGAAGCATTGATAGCCACTGATCCAACAATTACATCTCCTGGTCCAAATCTTGAGGTAATCAGAGGCCCTTTCAGTTTCAAGCTATTTAGTGTCATGGATAATTTTGTTATATCTCTTATGATTTACTTTTGAATTTCAGACTGCAGTTTACAAGACAGGAGCTGTATGCTCCGCCTTCCTTGCCAACATCGGCACGTCTGATGCAACGGTAACCTTTAATGGCAATTCATATCACTTGCCTGGATGGTCTGTGAGCATCTTACCAGACTGCAAGAATGTTGTACTCAATACTGCAAAGGTTTGTCGATATCTTTTCTTCTATTTTTTTGTTCAAGAAGTAAGTAGAACATAAACTAAAGTTATTTTTCGTATGACAGGTTAATTCTGCATCTATGATTTCAAGTTTCGCAACTGAATCTTTAAAAGAAAAGGTTGATTCTTTGGACGGTTCAAGTTCAGGATGGAGTTGGATTAGTGAACCTGTCGGTATTTCAACGCCTGATGCATTCACAAAATCTGGACTACTCGAGCAAATAAACACGACGGCTGATAGAAGTGACTACTTATGGTACTCATTAAGGTATATGAGTTTCCAAGGTTGAGATAGCTTTTTTTAACTGGAATTTCTCCGCGCCCATGTTAACCTTTTTCTATTTGTTTTGAAGCATTGTTGATGAAGATAATGCAGGTGATCAACCTGTCCTTCATATTGAATCCCTTGGCCATGCCCTTCATGCTTTTGTAAATGGGAAGCTTGCTGGTAAGGAAAAAAAGAGTTAAAACTTGATATTTATTTCTTGAATGAAGTATTTCATGAATTATGTAATGAATGAGATTTCGATATGTTATTTCCGAGAATTTTTTCAGGGAGTAAAGCCGGCAACTACGGAAACGTGAAGGTCAACGTGGATATACCTATTACACTTGTAACTGGAAAGAACACGATTGATCTCCTGAGTTTAACAGTGGGATTACAGGTTCATATTTTCTTATTATACATAATTAAAGCATATACAACAACAAAATCATGGTTTTTAATATGCATCATGTGGTTAATGTCAATTTTACACGCCACAGAACTATGGAGCTTTTTATGACACAGTGGGTGCGGGGATCACCGGTCCGGTAGTATTGAAAGGTTTGAAAAATGGCAGTAGCGTCGATCTCTCCTCACAGCAATGGACATATCAGGTTAGTCTCGGCTTGACTTAAGGCCTATTTTTGTTTCTCCTTTTGAGTTTTGGTGAATTAATTATATTGGCTGTATTTTTGTGAATGCAGGTTGGCCTTCAAGGTGAATTTGTAGGTCTGCCTAGTGGGAATGTTGGACAGTGGAATTCACAATCAAACTTACCTACAAATCAACCTTTGACTTGGTACAAGGTAATCTTATTAAAATAAAGCGTTCTATTTAAATTCTCAAGTTTTTCTTCAGTAGACTAATGTCGGTACATGTTGTATTAGACGAACTTTGTTGCTCCCTCCGGAAGTAACCCGGTTGCAATCGACTTCACGGGGATGGGAAAAGGCGAAGCTTGGGTGAACGGACAAAGCATAGGGCGATACTGGCCAACATACATCTCTTCGAATTCTGGCTGTACTGACTCATGCAATTATAAAGGAGCATATTCTGCATCCAAATGCCTCAAGAATTGTGGAAAACCATCACAGACATTGTAAGTGTTAGCTATTATATTCTACAGTAAAGAACTTGAAAGTAATTAATTAGTGATATCACTGATATGATCATACCTGAAAACTAATGCGCTTTAATCGTATATACGTAATTGTTGAATAAAGCAGACCTTTTAGATACTGATTGAGACACTGATCCTGCAGATATCATGTACCGCGATCGTGGTTGAAGCCAGATAGCAACACTCTTGTATTGTTTGAGGAAAGCGGAGGCGACCCCTCGAAAATATCTTTTGGTACAAGACAGATAGAAAGTGTGTGTTCACATGTAACTGAATCTCACCCTCCACCTGTAGACACGTGGAATTCGGATACAGAATCAGAAAGAAAGGTAGGTCCTGTACTGTCACTGGAATGCCCTTATCCTAATCAGGTGATCTCTTCCATTAAATTTGCAAGCTTTGGAACGCCTCGTGGGACTTGTGGAAACTACAACCACGGAAGCTGCAGCAGCAATAAGGCTCTATCCACTGTGCAAAAGGTATTATTATATGAGTTTCATTTTTATACACGACCGGTGTTAATGTTTTTACACTGTATGAAGTTTATATTTCCTTTTGACCTATACTGAATCGATGATCGTTAACAGGCCTGCATTGGATCGAGCAGTTGTAATATTGGAGTATCAATTAATACATTTGGAAATCCATGCAGAGGAGTAACAAAGAGTTTAGCTGTTGAAGCTGCTTGTACATAG
Protein sequence

>MS.gene062574.t1

MRGTQIVFVLLWFLGVYVPASFCSNVTYDHRALVIDGKRRVLMSGSIHYPRSTPQMWPDLIQKSKDGGIDVIETYVFWNLHEPVRGQYNFEGRGDLVGFVKAVAAAGLYVHLRIGPYACAEWNYGGFPLWLHFIPGIKFRTDNEPFKAEMKRFTAKIVDLMKQENLYASQGGPIILSQIENEYGNIDTHYGPAAKTYINWAASMAASLDTGVPWIMCNQANAPDPIINTCNNFYCDQFTPNSDKKPKMWTENWSGWFLAFGGAVPYRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFGRTTGGPFISTSYDYDAPIDEYGDIRQPKWGHLKDLHKAIKLCEEALIATDPTITSPGPNLETAVYKTGAVCSAFLANIGTSDATVTFNGNSYHLPGWSVSILPDCKNVVLNTAKVNSASMISSFATESLKEKVDSLDGSSSGWSWISEPVGISTPDAFTKSGLLEQINTTADRSDYLWYSLSIVDEDNAGDQPVLHIESLGHALHAFVNGKLAGSKAGNYGNVKVNVDIPITLVTGKNTIDLLSLTVGLQNYGAFYDTVGAGITGPVVLKGLKNGSSVDLSSQQWTYQVGLQGEFVGLPSGNVGQWNSQSNLPTNQPLTWYKTNFVAPSGSNPVAIDFTGMGKGEAWVNGQSIGRYWPTYISSNSGCTDSCNYKGAYSASKCLKNCGKPSQTLYHVPRSWLKPDSNTLVLFEESGGDPSKISFGTRQIESVCSHVTESHPPPVDTWNSDTESERKVGPVLSLECPYPNQVISSIKFASFGTPRGTCGNYNHGSCSSNKALSTVQKACIGSSSCNIGVSINTFGNPCRGVTKSLAVEAACT