Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06358.t1 | RHN69989.1 | 98.5 | 744 | 10 | 1 | 1 | 744 | 1 | 743 | 0.00E+00 | 1545.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06358.t1 | Q9FN08 | 71.1 | 714 | 200 | 2 | 26 | 737 | 30 | 739 | 0.0e+00 | 1129.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06358.t1 | A0A396IWB3 | 98.5 | 744 | 10 | 1 | 1 | 744 | 1 | 743 | 0.0e+00 | 1545.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049243 | MS.gene06358 | 0.820644 | 6.15E-53 | -1.69E-46 |
MS.gene057165 | MS.gene06358 | 0.839018 | 2.04E-57 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene31311 | MS.gene06358 | PPI |
MS.gene06358 | MS.gene074327 | PPI |
MS.gene08620 | MS.gene06358 | PPI |
MS.gene06358 | MS.gene42824 | PPI |
MS.gene42827 | MS.gene06358 | PPI |
MS.gene062574 | MS.gene06358 | PPI |
MS.gene007647 | MS.gene06358 | PPI |
MS.gene42823 | MS.gene06358 | PPI |
MS.gene074324 | MS.gene06358 | PPI |
MS.gene074326 | MS.gene06358 | PPI |
MS.gene31309 | MS.gene06358 | PPI |
MS.gene028734 | MS.gene06358 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06358.t1 | MTR_3g096900 | 98.365 | 734 | 11 | 1 | 1 | 734 | 1 | 733 | 0.0 | 1503 |
MS.gene06358.t1 | MTR_3g096900 | 98.431 | 701 | 10 | 1 | 1 | 701 | 1 | 700 | 0.0 | 1435 |
MS.gene06358.t1 | MTR_3g096900 | 98.246 | 627 | 10 | 1 | 1 | 627 | 1 | 626 | 0.0 | 1275 |
MS.gene06358.t1 | MTR_2g094060 | 57.163 | 719 | 293 | 7 | 26 | 741 | 20 | 726 | 0.0 | 831 |
MS.gene06358.t1 | MTR_2g094060 | 57.163 | 719 | 293 | 7 | 26 | 741 | 20 | 726 | 0.0 | 830 |
MS.gene06358.t1 | MTR_2g094020 | 57.123 | 716 | 292 | 8 | 26 | 736 | 20 | 725 | 0.0 | 827 |
MS.gene06358.t1 | MTR_8g016230 | 52.774 | 739 | 328 | 5 | 1 | 736 | 5 | 725 | 0.0 | 811 |
MS.gene06358.t1 | MTR_4g059680 | 55.556 | 720 | 305 | 8 | 26 | 741 | 24 | 732 | 0.0 | 810 |
MS.gene06358.t1 | MTR_2g100110 | 55.370 | 717 | 306 | 4 | 23 | 736 | 23 | 728 | 0.0 | 806 |
MS.gene06358.t1 | MTR_5g021190 | 53.306 | 726 | 326 | 4 | 14 | 737 | 12 | 726 | 0.0 | 800 |
MS.gene06358.t1 | MTR_2g039120 | 53.406 | 734 | 315 | 6 | 3 | 734 | 17 | 725 | 0.0 | 798 |
MS.gene06358.t1 | MTR_1g018200 | 54.685 | 715 | 310 | 6 | 23 | 734 | 26 | 729 | 0.0 | 792 |
MS.gene06358.t1 | MTR_1g023120 | 52.156 | 719 | 329 | 7 | 28 | 743 | 29 | 735 | 0.0 | 781 |
MS.gene06358.t1 | MTR_3g112370 | 50.806 | 744 | 351 | 6 | 1 | 741 | 1 | 732 | 0.0 | 780 |
MS.gene06358.t1 | MTR_2g094060 | 57.312 | 677 | 274 | 7 | 26 | 699 | 20 | 684 | 0.0 | 779 |
MS.gene06358.t1 | MTR_2g039120 | 52.639 | 701 | 305 | 6 | 3 | 701 | 17 | 692 | 0.0 | 746 |
MS.gene06358.t1 | MTR_8g085210 | 50.750 | 733 | 324 | 10 | 27 | 730 | 49 | 773 | 0.0 | 740 |
MS.gene06358.t1 | MTR_1g023120 | 51.669 | 689 | 318 | 7 | 58 | 743 | 1 | 677 | 0.0 | 737 |
MS.gene06358.t1 | MTR_5g024080 | 49.793 | 723 | 340 | 10 | 19 | 731 | 1 | 710 | 0.0 | 707 |
MS.gene06358.t1 | MTR_2g042610 | 49.462 | 744 | 353 | 12 | 5 | 739 | 10 | 739 | 0.0 | 704 |
MS.gene06358.t1 | MTR_5g025830 | 48.942 | 709 | 348 | 8 | 28 | 732 | 28 | 726 | 0.0 | 694 |
MS.gene06358.t1 | MTR_2g039120 | 53.333 | 630 | 270 | 4 | 3 | 630 | 17 | 624 | 0.0 | 675 |
MS.gene06358.t1 | MTR_2g100110 | 56.446 | 574 | 239 | 3 | 23 | 593 | 23 | 588 | 0.0 | 664 |
MS.gene06358.t1 | MTR_3g096910 | 46.730 | 734 | 346 | 10 | 3 | 731 | 5 | 698 | 0.0 | 657 |
MS.gene06358.t1 | MTR_3g005570 | 46.197 | 710 | 360 | 10 | 5 | 708 | 10 | 703 | 0.0 | 642 |
MS.gene06358.t1 | MTR_2g039120 | 52.961 | 608 | 256 | 5 | 3 | 602 | 17 | 602 | 0.0 | 642 |
MS.gene06358.t1 | MTR_3g088520 | 47.295 | 721 | 334 | 11 | 13 | 731 | 11 | 687 | 0.0 | 640 |
MS.gene06358.t1 | MTR_4g073290 | 45.109 | 736 | 367 | 11 | 1 | 732 | 1 | 703 | 0.0 | 637 |
MS.gene06358.t1 | MTR_3g117840 | 43.820 | 712 | 358 | 11 | 26 | 732 | 33 | 707 | 0.0 | 608 |
MS.gene06358.t1 | MTR_3g088520 | 47.189 | 676 | 311 | 11 | 58 | 731 | 1 | 632 | 0.0 | 596 |
MS.gene06358.t1 | MTR_3g096910 | 44.007 | 584 | 287 | 8 | 152 | 731 | 1 | 548 | 3.79e-161 | 478 |
MS.gene06358.t1 | MTR_5g022590 | 41.379 | 319 | 148 | 8 | 47 | 363 | 11 | 292 | 5.21e-74 | 246 |
MS.gene06358.t1 | MTR_4g126330 | 31.517 | 422 | 178 | 10 | 283 | 701 | 131 | 444 | 2.17e-49 | 180 |
MS.gene06358.t1 | MTR_4g126330 | 55.833 | 120 | 47 | 2 | 83 | 196 | 25 | 144 | 2.14e-33 | 134 |
MS.gene06358.t1 | MTR_3g005610 | 29.655 | 290 | 163 | 7 | 441 | 723 | 25 | 280 | 6.68e-33 | 129 |
MS.gene06358.t1 | MTR_2g059440 | 29.167 | 288 | 164 | 8 | 442 | 723 | 26 | 279 | 8.90e-30 | 120 |
MS.gene06358.t1 | MTR_2g100000 | 30.000 | 320 | 177 | 9 | 38 | 323 | 64 | 370 | 7.23e-27 | 117 |
MS.gene06358.t1 | MTR_2g059430 | 26.296 | 270 | 133 | 6 | 455 | 723 | 7 | 211 | 1.67e-19 | 89.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06358.t1 | AT5G63810 | 71.049 | 715 | 201 | 2 | 25 | 737 | 29 | 739 | 0.0 | 1107 |
MS.gene06358.t1 | AT2G28470 | 55.772 | 719 | 307 | 5 | 22 | 736 | 26 | 737 | 0.0 | 841 |
MS.gene06358.t1 | AT2G28470 | 55.772 | 719 | 307 | 5 | 22 | 736 | 26 | 737 | 0.0 | 841 |
MS.gene06358.t1 | AT2G28470 | 55.772 | 719 | 307 | 5 | 22 | 736 | 20 | 731 | 0.0 | 841 |
MS.gene06358.t1 | AT2G28470 | 55.772 | 719 | 307 | 5 | 22 | 736 | 20 | 731 | 0.0 | 841 |
MS.gene06358.t1 | AT3G13750 | 55.751 | 739 | 312 | 5 | 1 | 736 | 8 | 734 | 0.0 | 838 |
MS.gene06358.t1 | AT4G36360 | 53.297 | 728 | 326 | 6 | 14 | 738 | 19 | 735 | 0.0 | 802 |
MS.gene06358.t1 | AT4G36360 | 53.297 | 728 | 326 | 6 | 14 | 738 | 19 | 735 | 0.0 | 802 |
MS.gene06358.t1 | AT3G52840 | 54.670 | 728 | 314 | 8 | 9 | 734 | 65 | 778 | 0.0 | 791 |
MS.gene06358.t1 | AT3G52840 | 54.670 | 728 | 314 | 8 | 9 | 734 | 11 | 724 | 0.0 | 790 |
MS.gene06358.t1 | AT1G45130 | 52.439 | 738 | 335 | 7 | 5 | 737 | 6 | 732 | 0.0 | 788 |
MS.gene06358.t1 | AT5G56870 | 54.036 | 731 | 312 | 8 | 6 | 734 | 15 | 723 | 0.0 | 784 |
MS.gene06358.t1 | AT2G28470 | 55.279 | 682 | 294 | 5 | 22 | 699 | 26 | 700 | 0.0 | 783 |
MS.gene06358.t1 | AT4G26140 | 52.933 | 716 | 319 | 8 | 23 | 734 | 24 | 725 | 0.0 | 761 |
MS.gene06358.t1 | AT4G26140 | 51.552 | 741 | 316 | 10 | 23 | 734 | 24 | 750 | 0.0 | 748 |
MS.gene06358.t1 | AT2G32810 | 48.684 | 760 | 361 | 10 | 6 | 743 | 14 | 766 | 0.0 | 740 |
MS.gene06358.t1 | AT2G32810 | 48.684 | 760 | 361 | 10 | 6 | 743 | 14 | 766 | 0.0 | 740 |
MS.gene06358.t1 | AT5G20710 | 48.571 | 735 | 351 | 11 | 9 | 731 | 9 | 728 | 0.0 | 715 |
MS.gene06358.t1 | AT4G26140 | 51.271 | 708 | 302 | 10 | 23 | 701 | 24 | 717 | 0.0 | 704 |
MS.gene06358.t1 | AT1G45130 | 52.147 | 652 | 298 | 6 | 89 | 737 | 13 | 653 | 0.0 | 691 |
MS.gene06358.t1 | AT5G63800 | 48.054 | 745 | 345 | 9 | 3 | 744 | 10 | 715 | 0.0 | 679 |
MS.gene06358.t1 | AT1G31740 | 46.685 | 739 | 328 | 16 | 1 | 731 | 2 | 682 | 0.0 | 651 |
MS.gene06358.t1 | AT4G26140 | 53.607 | 610 | 270 | 6 | 23 | 630 | 24 | 622 | 0.0 | 647 |
MS.gene06358.t1 | AT4G26140 | 53.607 | 610 | 270 | 6 | 23 | 630 | 24 | 622 | 0.0 | 647 |
MS.gene06358.t1 | AT1G77410 | 46.438 | 730 | 336 | 12 | 13 | 731 | 7 | 692 | 0.0 | 646 |
MS.gene06358.t1 | AT4G26140 | 53.595 | 612 | 269 | 7 | 23 | 630 | 24 | 624 | 0.0 | 645 |
MS.gene06358.t1 | AT1G77410 | 46.122 | 735 | 336 | 13 | 13 | 731 | 7 | 697 | 0.0 | 640 |
MS.gene06358.t1 | AT2G16730 | 45.161 | 713 | 347 | 14 | 28 | 732 | 44 | 720 | 0.0 | 614 |
MS.gene06358.t1 | AT4G26140 | 55.292 | 548 | 229 | 7 | 23 | 567 | 24 | 558 | 0.0 | 602 |
MS.gene06358.t1 | AT4G35010 | 44.143 | 700 | 352 | 11 | 28 | 722 | 41 | 706 | 0.0 | 596 |
MS.gene06358.t1 | AT4G26140 | 53.229 | 573 | 227 | 9 | 23 | 567 | 24 | 583 | 0.0 | 589 |
MS.gene06358.t1 | AT4G26140 | 53.229 | 573 | 227 | 9 | 23 | 567 | 24 | 583 | 0.0 | 589 |
MS.gene06358.t1 | AT4G38590 | 43.685 | 673 | 339 | 11 | 58 | 724 | 1 | 639 | 0.0 | 559 |
MS.gene06358.t1 | AT4G38590 | 41.384 | 737 | 376 | 15 | 3 | 724 | 8 | 703 | 0.0 | 545 |
MS.gene06358.t1 | AT1G77410 | 44.444 | 612 | 288 | 11 | 128 | 731 | 19 | 586 | 1.74e-171 | 509 |
MS.gene06358.t1 | AT1G77410 | 44.444 | 612 | 288 | 11 | 128 | 731 | 19 | 586 | 1.74e-171 | 509 |
MS.gene06358.t1 | AT5G20710 | 46.097 | 538 | 263 | 11 | 206 | 731 | 1 | 523 | 1.13e-164 | 489 |
MS.gene06358.t1 | AT2G04060 | 34.667 | 375 | 162 | 10 | 293 | 665 | 23 | 316 | 2.05e-49 | 181 |
MS.gene06358.t1 | AT1G72990 | 32.164 | 342 | 185 | 9 | 38 | 345 | 18 | 346 | 9.95e-36 | 144 |
MS.gene06358.t1 | AT1G72990 | 32.164 | 342 | 185 | 9 | 38 | 345 | 73 | 401 | 1.93e-35 | 144 |
MS.gene06358.t1 | AT1G72990 | 32.164 | 342 | 185 | 9 | 38 | 345 | 73 | 401 | 1.93e-35 | 144 |
MS.gene06358.t1 | AT2G04062 | 39.106 | 179 | 84 | 3 | 23 | 199 | 2 | 157 | 2.59e-32 | 123 |
MS.gene06358.t1 | AT1G72990 | 31.776 | 321 | 172 | 9 | 59 | 345 | 32 | 339 | 1.44e-30 | 128 |
Find 194 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATTAAGGCTTCCACCTTTC+TGG | 0.116473 | 3.1:-77234797 | None:intergenic |
GTTGCTGCAGAATGGAATTT+TGG | 0.198599 | 3.1:+77232991 | MS.gene06358:CDS |
ACTTGCCTGGGATAAGATTA+TGG | 0.198890 | 3.1:-77233690 | None:intergenic |
CCAGTTCTCAGTCCACATTT+TGG | 0.202497 | 3.1:-77234248 | None:intergenic |
TGTTAAGGTTTAAGACTTTC+GGG | 0.208361 | 3.1:+77234718 | MS.gene06358:intron |
TCCTTAAGATGTCCCCATTT+TGG | 0.209550 | 3.1:-77235231 | None:intergenic |
ATCATCAACGTTAGAAATAA+AGG | 0.234077 | 3.1:-77240969 | None:intergenic |
TGGATTGGATATGTTGTATA+TGG | 0.262763 | 3.1:+77243350 | MS.gene06358:CDS |
GTAACAAGTGTTAAGATTAT+TGG | 0.268204 | 3.1:+77242863 | MS.gene06358:CDS |
TTCATATTACATACCATAAA+AGG | 0.275448 | 3.1:-77233470 | None:intergenic |
AAAGTATCTGGAGCCCCTTC+TGG | 0.275871 | 3.1:+77244024 | MS.gene06358:CDS |
GTACCATGTAGTAATTATTA+AGG | 0.286717 | 3.1:-77234812 | None:intergenic |
CAACCAGTGTCACATTTATC+TGG | 0.287344 | 3.1:-77243486 | None:intergenic |
GGTTGCCTAGACTTCCAAAA+TGG | 0.295682 | 3.1:+77235217 | MS.gene06358:CDS |
ATGTTAAGGTTTAAGACTTT+CGG | 0.303128 | 3.1:+77234717 | MS.gene06358:intron |
GAGCTTGACCGTTGGCTTGC+AGG | 0.305364 | 3.1:+77242672 | MS.gene06358:CDS |
TGACTTACCATACTCATCTA+TGG | 0.307088 | 3.1:-77235069 | None:intergenic |
CATGTCAATGCCTGCCCTTT+TGG | 0.308433 | 3.1:-77243178 | None:intergenic |
ATGATAAGACAGTGGTATTT+CGG | 0.323095 | 3.1:+77240996 | MS.gene06358:CDS |
CTGGTTTGCTTCCTTTCTTT+AGG | 0.327025 | 3.1:-77242138 | None:intergenic |
AAAGGTCTAGCCTGGTTAAA+TGG | 0.330100 | 3.1:+77243375 | MS.gene06358:CDS |
TTGCAGATAGAAAATGAATA+TGG | 0.334921 | 3.1:+77233845 | MS.gene06358:intron |
TTTAAATCACTTACATTTCC+AGG | 0.338376 | 3.1:-77232791 | None:intergenic |
TCCAAAATGGGGACATCTTA+AGG | 0.342076 | 3.1:+77235230 | MS.gene06358:CDS |
AAAGCTTCTCTTTCTTCATA+AGG | 0.354255 | 3.1:-77233649 | None:intergenic |
TCAAGGAGAATCCAGGAATC+TGG | 0.355577 | 3.1:+77241659 | MS.gene06358:CDS |
GCCCCTTCTGGAAAATCTTA+AGG | 0.365133 | 3.1:+77244036 | MS.gene06358:CDS |
CGATCTTGGTTCAAGCCATC+TGG | 0.372055 | 3.1:+77243937 | MS.gene06358:CDS |
CTAGGTACTGGAACTGGAAA+TGG | 0.373902 | 3.1:+77242580 | MS.gene06358:intron |
GAGAAGAAATTGGAAGATAT+TGG | 0.375715 | 3.1:+77243397 | MS.gene06358:CDS |
TGTGAGCATGTATTGCTCTA+TGG | 0.376459 | 3.1:+77235276 | MS.gene06358:CDS |
TGGTTAAATGGAGAAGAAAT+TGG | 0.380567 | 3.1:+77243387 | MS.gene06358:CDS |
CAGGTAATCAGTGGTATCTT+TGG | 0.383419 | 3.1:-77241731 | None:intergenic |
GGTATCATGTTCCACGATCT+TGG | 0.391098 | 3.1:+77243923 | MS.gene06358:intron |
GCTATTGTAGATGCTCCATC+TGG | 0.391883 | 3.1:+77243315 | MS.gene06358:CDS |
ACATTCACTACTCTAGTATA+TGG | 0.391908 | 3.1:+77232478 | MS.gene06358:CDS |
TTAAGAACCCCATCTCTCTC+AGG | 0.394136 | 3.1:+77242623 | MS.gene06358:CDS |
GCCCCTATGAAGTCATAAAA+TGG | 0.395212 | 3.1:-77242836 | None:intergenic |
TCAACTTTGTAGTATTACTT+TGG | 0.397332 | 3.1:+77232889 | MS.gene06358:intron |
CTCACGAACGTAATCTTTGT+TGG | 0.400871 | 3.1:-77243997 | None:intergenic |
TTCCATTCTGCAGCAACAAA+TGG | 0.403178 | 3.1:-77232985 | None:intergenic |
GGAATATAATGCAGCCATAC+TGG | 0.404939 | 3.1:-77233419 | None:intergenic |
CTTGTCATCTTTGAGGAGAA+AGG | 0.407494 | 3.1:+77243967 | MS.gene06358:CDS |
CCTTGATGTTCAGTATCATA+TGG | 0.410996 | 3.1:+77233601 | MS.gene06358:intron |
TGGTAAGAAATATGCCTTAT+GGG | 0.411045 | 3.1:+77233895 | MS.gene06358:CDS |
GATGCTCCCATAGATGAGTA+TGG | 0.420055 | 3.1:+77235062 | MS.gene06358:CDS |
ATGGTAAGAAATATGCCTTA+TGG | 0.423286 | 3.1:+77233894 | MS.gene06358:CDS |
AAATGTTCTTGTCATCTTTG+AGG | 0.425054 | 3.1:+77243960 | MS.gene06358:CDS |
GCAAAGGTTGTTCAGAATGC+TGG | 0.426328 | 3.1:+77232937 | MS.gene06358:CDS |
CATTTGCAGCAATCAGATAA+AGG | 0.427998 | 3.1:+77241610 | MS.gene06358:CDS |
GGTCATCTTACCACAGGATC+TGG | 0.429357 | 3.1:-77233983 | None:intergenic |
TAGGAGAGGTAGGTGTAAAT+TGG | 0.431632 | 3.1:-77234219 | None:intergenic |
TCATTGCAACTATGTTTGTC+GGG | 0.435700 | 3.1:-77241579 | None:intergenic |
CATCTTCTAGGTACTGGAAC+TGG | 0.437196 | 3.1:+77242574 | MS.gene06358:intron |
CCCCTTCTGGAAAATCTTAA+GGG | 0.443936 | 3.1:+77244037 | MS.gene06358:CDS |
CCAAAATGTGGACTGAGAAC+TGG | 0.445231 | 3.1:+77234248 | MS.gene06358:CDS |
ATGGTCAGTTAGCATTCTTC+CGG | 0.445803 | 3.1:+77241042 | MS.gene06358:CDS |
AACCCCATCTCTCTCAGGGC+TGG | 0.446102 | 3.1:+77242628 | MS.gene06358:CDS |
GTATGGCTGCATTATATTCC+AGG | 0.448393 | 3.1:+77233422 | MS.gene06358:CDS |
CTTGCCTGGGATAAGATTAT+GGG | 0.448529 | 3.1:-77233689 | None:intergenic |
ATCATTGCAACTATGTTTGT+CGG | 0.450630 | 3.1:-77241580 | None:intergenic |
TTTGTGAATCAGAAATATCA+AGG | 0.450877 | 3.1:+77242199 | MS.gene06358:CDS |
TCTGATTGCTGCAAATGCTC+TGG | 0.451699 | 3.1:-77241604 | None:intergenic |
AATGGTCATGAGCTTTCTCC+TGG | 0.452906 | 3.1:+77232773 | MS.gene06358:CDS |
ATGTGGACTGAGAACTGGCC+TGG | 0.453196 | 3.1:+77234253 | MS.gene06358:CDS |
GATATCTATACTGACTCATC+TGG | 0.453553 | 3.1:+77240935 | MS.gene06358:CDS |
CTTTGGAGGACGATTCGATC+TGG | 0.454784 | 3.1:+77232906 | MS.gene06358:CDS |
TTCCCAGCCCTGAGAGAGAT+GGG | 0.457802 | 3.1:-77242631 | None:intergenic |
CTTATGTGTGTTAGTATCAC+GGG | 0.464427 | 3.1:+77234982 | MS.gene06358:intron |
ACCCCATCTCTCTCAGGGCT+GGG | 0.465337 | 3.1:+77242629 | MS.gene06358:CDS |
TCATAACTTGTGGTAATGAA+TGG | 0.465871 | 3.1:-77235035 | None:intergenic |
TTCGTGAGACGTAAAGTATC+TGG | 0.466397 | 3.1:+77244012 | MS.gene06358:CDS |
ACTTTGTAGTATTACTTTGG+AGG | 0.468820 | 3.1:+77232892 | MS.gene06358:intron |
GTGGAGAGCCTTCACAGAAA+TGG | 0.468835 | 3.1:+77243508 | MS.gene06358:CDS |
GTTGCTCGTTTCTTCCAGAA+AGG | 0.469040 | 3.1:+77234783 | MS.gene06358:CDS |
TTGGATTCTATTAAAAGAGC+TGG | 0.478298 | 3.1:-77242157 | None:intergenic |
AACACAACATTCTTGCAATC+CGG | 0.478519 | 3.1:-77241061 | None:intergenic |
CACTATTCATCCCCTCTCCC+TGG | 0.481105 | 3.1:-77243129 | None:intergenic |
TTCTTAAATTCACTTATCCT+AGG | 0.481158 | 3.1:-77243420 | None:intergenic |
ACTTAAATGGGATGTATTCA+AGG | 0.481248 | 3.1:+77241642 | MS.gene06358:CDS |
TGAATGGACCACCGGCTGTA+CGG | 0.483232 | 3.1:-77235019 | None:intergenic |
CAAGGAGAATCCAGGAATCT+GGG | 0.483493 | 3.1:+77241660 | MS.gene06358:CDS |
TGGGGATGAACCAGTTGGAT+TGG | 0.484814 | 3.1:+77243335 | MS.gene06358:CDS |
CTCAAAATACAAGCGTCCCT+TGG | 0.486606 | 3.1:+77233936 | MS.gene06358:CDS |
TAAGTTCTGAATACAGTGCC+TGG | 0.487411 | 3.1:-77233440 | None:intergenic |
GCCCATTTGTTGCTGCAGAA+TGG | 0.488183 | 3.1:+77232983 | MS.gene06358:CDS |
GATATGTTGTATATGGGAAA+AGG | 0.488501 | 3.1:+77243357 | MS.gene06358:CDS |
GTTGCCTAGACTTCCAAAAT+GGG | 0.490828 | 3.1:+77235218 | MS.gene06358:CDS |
TCCATTCTGCAGCAACAAAT+GGG | 0.493536 | 3.1:-77232984 | None:intergenic |
GGTCGCTCACTCATCATTGA+TGG | 0.501024 | 3.1:+77232529 | MS.gene06358:CDS |
ATTGCAGTGGAGTACCAGTA+TGG | 0.507560 | 3.1:+77233405 | MS.gene06358:intron |
TACAACATATCCAATCCAAC+TGG | 0.507662 | 3.1:-77243345 | None:intergenic |
AGAACATCTGAGTATATACC+AGG | 0.507790 | 3.1:+77243111 | MS.gene06358:CDS |
CTACGAAAACTATTATAAAG+AGG | 0.508707 | 3.1:+77233871 | MS.gene06358:CDS |
CTTCCCAGCCCTGAGAGAGA+TGG | 0.510780 | 3.1:-77242632 | None:intergenic |
GGATTGGATATGTTGTATAT+GGG | 0.512466 | 3.1:+77243351 | MS.gene06358:CDS |
TTGGGCCTCTTAGGAGAGGT+AGG | 0.514108 | 3.1:-77234229 | None:intergenic |
AATGAGGAGTTCCTAAAGAA+AGG | 0.514409 | 3.1:+77242127 | MS.gene06358:CDS |
TCAACTTCAGAACCACCAAA+AGG | 0.514752 | 3.1:+77243163 | MS.gene06358:CDS |
ACTTCTCAGATTGGAGTACA+AGG | 0.516832 | 3.1:+77243088 | MS.gene06358:intron |
CCTTATGTGTGTTAGTATCA+CGG | 0.525002 | 3.1:+77234981 | MS.gene06358:intron |
ATGTACTTGATTCTTCGAAT+CGG | 0.525024 | 3.1:+77232961 | MS.gene06358:CDS |
CGATCTGGTTCAGTTTGCAA+AGG | 0.528398 | 3.1:+77232921 | MS.gene06358:CDS |
CATACTTATTGATGCAAATG+AGG | 0.529366 | 3.1:+77242111 | MS.gene06358:CDS |
GACTTACCATACTCATCTAT+GGG | 0.537763 | 3.1:-77235068 | None:intergenic |
GATAAATGTGACACTGGTTG+TGG | 0.539576 | 3.1:+77243489 | MS.gene06358:CDS |
TGCTAACTGACCATGCTGGC+AGG | 0.544083 | 3.1:-77241033 | None:intergenic |
CAACTTCAGAACCACCAAAA+GGG | 0.544640 | 3.1:+77243164 | MS.gene06358:CDS |
CATAAGGTTCACTATGTATG+TGG | 0.545509 | 3.1:-77233633 | None:intergenic |
TATCTCCCTCGGTCCTTCTG+TGG | 0.545554 | 3.1:+77235311 | MS.gene06358:CDS |
TTCTAATGCGTGGACATACA+AGG | 0.545711 | 3.1:+77242913 | MS.gene06358:CDS |
GGGTCCCATAATCTTATCCC+AGG | 0.546486 | 3.1:+77233685 | MS.gene06358:CDS |
TAGGATAAGTGAATTTAAGA+AGG | 0.546567 | 3.1:+77243422 | MS.gene06358:CDS |
CACTGTTGGCACATTATCCA+AGG | 0.549252 | 3.1:-77233953 | None:intergenic |
TTTATGCTATAGATGTGGCC+TGG | 0.549896 | 3.1:+77232692 | MS.gene06358:intron |
AATTTCTTCTCCATTTAACC+AGG | 0.550678 | 3.1:-77243385 | None:intergenic |
AAATTGGAAGATATTGGCCT+AGG | 0.553482 | 3.1:+77243403 | MS.gene06358:CDS |
CTATTGTAGATGCTCCATCT+GGG | 0.555292 | 3.1:+77243316 | MS.gene06358:CDS |
ATATGGGAAAAGGTCTAGCC+TGG | 0.556083 | 3.1:+77243367 | MS.gene06358:CDS |
AGGGGATGAATAGTGTGAAG+TGG | 0.556458 | 3.1:+77243137 | MS.gene06358:CDS |
TTACACCTACCTCTCCTAAG+AGG | 0.558050 | 3.1:+77234224 | MS.gene06358:CDS |
ATGACCATTCCAGAAAACAT+AGG | 0.559437 | 3.1:-77232759 | None:intergenic |
TTCAGAACCACCAAAAGGGC+AGG | 0.564274 | 3.1:+77243168 | MS.gene06358:CDS |
CTGAGTATATACCAGGGAGA+GGG | 0.565377 | 3.1:+77243118 | MS.gene06358:CDS |
TAAGAACCCCATCTCTCTCA+GGG | 0.565877 | 3.1:+77242624 | MS.gene06358:CDS |
AGCATGGAGAGTATGACCCT+TGG | 0.567877 | 3.1:-77242176 | None:intergenic |
GCTATATTGAGCTTGACCGT+TGG | 0.568015 | 3.1:+77242664 | MS.gene06358:CDS |
GCAGGCATTGACATGGTACA+AGG | 0.569368 | 3.1:+77243186 | MS.gene06358:CDS |
ATTTCTGATTCACAAAAGCA+TGG | 0.573486 | 3.1:-77242192 | None:intergenic |
CTCCTAAGAGGCCCAAAATG+TGG | 0.575954 | 3.1:+77234236 | MS.gene06358:CDS |
AAGTCGGTTAATATCTCCCT+CGG | 0.577408 | 3.1:+77235300 | MS.gene06358:CDS |
GATGTATTCAAGGAGAATCC+AGG | 0.580057 | 3.1:+77241652 | MS.gene06358:CDS |
AACACTACGAGGGTAATGAA+TGG | 0.581894 | 3.1:-77232578 | None:intergenic |
TTGAATTCAACATACCATCC+AGG | 0.582051 | 3.1:-77234271 | None:intergenic |
CATCGTATCACCTGCCAGCA+TGG | 0.584137 | 3.1:+77241023 | MS.gene06358:CDS |
ACATCTTCTGCTGGCCTGTG+AGG | 0.586280 | 3.1:-77234750 | None:intergenic |
GAAAACTATTATAAAGAGGA+TGG | 0.587317 | 3.1:+77233875 | MS.gene06358:CDS |
CTCCCTCGGTCCTTCTGTGG+AGG | 0.588824 | 3.1:+77235314 | MS.gene06358:CDS |
CCATCTGGGGATGAACCAGT+TGG | 0.590699 | 3.1:+77243330 | MS.gene06358:CDS |
GCTCGTTTCTTCCAGAAAGG+TGG | 0.593427 | 3.1:+77234786 | MS.gene06358:CDS |
ACTCTAGTATATGGTGCTGT+CGG | 0.598567 | 3.1:+77232487 | MS.gene06358:CDS |
TGTATTGCTCTATGGAAAGT+CGG | 0.600883 | 3.1:+77235284 | MS.gene06358:CDS |
CTTATTCAAACAGCAAAGGA+AGG | 0.600936 | 3.1:+77232716 | MS.gene06358:CDS |
GATCTGGAGCATCCCACTGT+TGG | 0.601988 | 3.1:-77233967 | None:intergenic |
ATTACCTGTGGCATACGACA+AGG | 0.604368 | 3.1:+77241746 | MS.gene06358:CDS |
GGACTGAGAACTGGCCTGGA+TGG | 0.605062 | 3.1:+77234257 | MS.gene06358:CDS |
ATACTAGAGTAGTGAATGTG+AGG | 0.605222 | 3.1:-77232474 | None:intergenic |
TCCCAGCCCTGAGAGAGATG+GGG | 0.605656 | 3.1:-77242630 | None:intergenic |
ATGACAAGAACATTTCCAGA+TGG | 0.606117 | 3.1:-77243952 | None:intergenic |
AAAGAAAATACCTCCACAGA+AGG | 0.608018 | 3.1:-77235324 | None:intergenic |
AATCCAGATAAATGTGACAC+TGG | 0.608292 | 3.1:+77243483 | MS.gene06358:CDS |
TGAGTATATACCAGGGAGAG+GGG | 0.609767 | 3.1:+77243119 | MS.gene06358:CDS |
TTTGCTGTTTGAATAAGACC+AGG | 0.610550 | 3.1:-77232710 | None:intergenic |
CAAACCTTGTCGTATGCCAC+AGG | 0.610819 | 3.1:-77241750 | None:intergenic |
GTTAAGGTTTAAGACTTTCG+GGG | 0.614385 | 3.1:+77234719 | MS.gene06358:intron |
TCTGAGTATATACCAGGGAG+AGG | 0.615144 | 3.1:+77243117 | MS.gene06358:CDS |
CAGAGATAAGAAGCTTGCGT+TGG | 0.616286 | 3.1:-77232552 | None:intergenic |
AGCATCATAGTCATAACTTG+TGG | 0.619696 | 3.1:-77235045 | None:intergenic |
ATTCAAACAGCAAAGGAAGG+TGG | 0.619732 | 3.1:+77232719 | MS.gene06358:CDS |
AAGGAGAATCCAGGAATCTG+GGG | 0.622591 | 3.1:+77241661 | MS.gene06358:CDS |
CCAACTGGTTCATCCCCAGA+TGG | 0.622884 | 3.1:-77243330 | None:intergenic |
TACTAGAGTAGTGAATGTGA+GGG | 0.623412 | 3.1:-77232473 | None:intergenic |
CATTGCAACTATGTTTGTCG+GGG | 0.625338 | 3.1:-77241578 | None:intergenic |
AGAATGCTAACTGACCATGC+TGG | 0.626092 | 3.1:-77241037 | None:intergenic |
TATCTTTGGTAGTATTGATG+TGG | 0.626242 | 3.1:-77241717 | None:intergenic |
TGGTCTTATTCAAACAGCAA+AGG | 0.630596 | 3.1:+77232712 | MS.gene06358:CDS |
CAAAAGGGCAGGCATTGACA+TGG | 0.634992 | 3.1:+77243179 | MS.gene06358:CDS |
GCAAGTCACCTGCAAGCCAA+CGG | 0.636915 | 3.1:-77242680 | None:intergenic |
CTTGGATAATGTGCCAACAG+TGG | 0.637440 | 3.1:+77233954 | MS.gene06358:CDS |
TGTGGTAATGAATGGACCAC+CGG | 0.637537 | 3.1:-77235027 | None:intergenic |
TAGACTTGTCTTCTAATGCG+TGG | 0.640564 | 3.1:+77242903 | MS.gene06358:CDS |
GTGGGATGCTCCAGATCCTG+TGG | 0.640974 | 3.1:+77233973 | MS.gene06358:CDS |
GTCATCTTTGAGGAGAAAGG+TGG | 0.641664 | 3.1:+77243970 | MS.gene06358:CDS |
TGTTGTGTTCAACACTGCAA+AGG | 0.641983 | 3.1:+77241075 | MS.gene06358:CDS |
TTGGATAATGTGCCAACAGT+GGG | 0.644032 | 3.1:+77233955 | MS.gene06358:CDS |
TACCTCCACAGAAGGACCGA+GGG | 0.646765 | 3.1:-77235316 | None:intergenic |
AAGCCTTAATAATTACTACA+TGG | 0.654512 | 3.1:+77234809 | MS.gene06358:CDS |
TATTGTAGATGCTCCATCTG+GGG | 0.656294 | 3.1:+77243317 | MS.gene06358:CDS |
GATGGCTTGAACCAAGATCG+TGG | 0.663637 | 3.1:-77243934 | None:intergenic |
GGTAGTAACGTCAGCTACGA+CGG | 0.664512 | 3.1:+77232508 | MS.gene06358:CDS |
CGTATGCCACAGGTAATCAG+TGG | 0.676978 | 3.1:-77241740 | None:intergenic |
ACTGTTGGCACATTATCCAA+GGG | 0.678844 | 3.1:-77233952 | None:intergenic |
AGGAGAATCCAGGAATCTGG+GGG | 0.687402 | 3.1:+77241662 | MS.gene06358:CDS |
ATACCTCCACAGAAGGACCG+AGG | 0.687655 | 3.1:-77235317 | None:intergenic |
TTATGTGTGTTAGTATCACG+GGG | 0.689418 | 3.1:+77234983 | MS.gene06358:intron |
TTGCCTAGACTTCCAAAATG+GGG | 0.690186 | 3.1:+77235219 | MS.gene06358:CDS |
TTAAGGTTTAAGACTTTCGG+GGG | 0.691252 | 3.1:+77234720 | MS.gene06358:intron |
CTGACAGCAGGAACACTACG+AGG | 0.691763 | 3.1:-77232589 | None:intergenic |
ATCAACGTTAGAAATAAAGG+CGG | 0.697212 | 3.1:-77240966 | None:intergenic |
AAGATACCACTGATTACCTG+TGG | 0.701515 | 3.1:+77241734 | MS.gene06358:CDS |
GTTCAAGAATGTGACTACAG+AGG | 0.714286 | 3.1:+77243453 | MS.gene06358:CDS |
GAACATCTGAGTATATACCA+GGG | 0.726844 | 3.1:+77243112 | MS.gene06358:CDS |
TGACAGCAGGAACACTACGA+GGG | 0.734429 | 3.1:-77232588 | None:intergenic |
TATGTGTGTTAGTATCACGG+GGG | 0.825644 | 3.1:+77234984 | MS.gene06358:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 77232436 | 77244056 | 77232436 | ID=MS.gene06358 |
chr3.1 | mRNA | 77232436 | 77244056 | 77232436 | ID=MS.gene06358.t1;Parent=MS.gene06358 |
chr3.1 | exon | 77232436 | 77232606 | 77232436 | ID=MS.gene06358.t1.exon1;Parent=MS.gene06358.t1 |
chr3.1 | CDS | 77232436 | 77232606 | 77232436 | ID=cds.MS.gene06358.t1;Parent=MS.gene06358.t1 |
chr3.1 | exon | 77232704 | 77232799 | 77232704 | ID=MS.gene06358.t1.exon2;Parent=MS.gene06358.t1 |
chr3.1 | CDS | 77232704 | 77232799 | 77232704 | ID=cds.MS.gene06358.t1;Parent=MS.gene06358.t1 |
chr3.1 | exon | 77232901 | 77233013 | 77232901 | ID=MS.gene06358.t1.exon3;Parent=MS.gene06358.t1 |
chr3.1 | CDS | 77232901 | 77233013 | 77232901 | ID=cds.MS.gene06358.t1;Parent=MS.gene06358.t1 |
chr3.1 | exon | 77233412 | 77233478 | 77233412 | ID=MS.gene06358.t1.exon4;Parent=MS.gene06358.t1 |
chr3.1 | CDS | 77233412 | 77233478 | 77233412 | ID=cds.MS.gene06358.t1;Parent=MS.gene06358.t1 |
chr3.1 | exon | 77233614 | 77233706 | 77233614 | ID=MS.gene06358.t1.exon5;Parent=MS.gene06358.t1 |
chr3.1 | CDS | 77233614 | 77233706 | 77233614 | ID=cds.MS.gene06358.t1;Parent=MS.gene06358.t1 |
chr3.1 | exon | 77233851 | 77233994 | 77233851 | ID=MS.gene06358.t1.exon6;Parent=MS.gene06358.t1 |
chr3.1 | CDS | 77233851 | 77233994 | 77233851 | ID=cds.MS.gene06358.t1;Parent=MS.gene06358.t1 |
chr3.1 | exon | 77234190 | 77234278 | 77234190 | ID=MS.gene06358.t1.exon7;Parent=MS.gene06358.t1 |
chr3.1 | CDS | 77234190 | 77234278 | 77234190 | ID=cds.MS.gene06358.t1;Parent=MS.gene06358.t1 |
chr3.1 | exon | 77234725 | 77234830 | 77234725 | ID=MS.gene06358.t1.exon8;Parent=MS.gene06358.t1 |
chr3.1 | CDS | 77234725 | 77234830 | 77234725 | ID=cds.MS.gene06358.t1;Parent=MS.gene06358.t1 |
chr3.1 | exon | 77234996 | 77235083 | 77234996 | ID=MS.gene06358.t1.exon9;Parent=MS.gene06358.t1 |
chr3.1 | CDS | 77234996 | 77235083 | 77234996 | ID=cds.MS.gene06358.t1;Parent=MS.gene06358.t1 |
chr3.1 | exon | 77235217 | 77235335 | 77235217 | ID=MS.gene06358.t1.exon10;Parent=MS.gene06358.t1 |
chr3.1 | CDS | 77235217 | 77235335 | 77235217 | ID=cds.MS.gene06358.t1;Parent=MS.gene06358.t1 |
chr3.1 | exon | 77240932 | 77241096 | 77240932 | ID=MS.gene06358.t1.exon11;Parent=MS.gene06358.t1 |
chr3.1 | CDS | 77240932 | 77241096 | 77240932 | ID=cds.MS.gene06358.t1;Parent=MS.gene06358.t1 |
chr3.1 | exon | 77241571 | 77241767 | 77241571 | ID=MS.gene06358.t1.exon12;Parent=MS.gene06358.t1 |
chr3.1 | CDS | 77241571 | 77241767 | 77241571 | ID=cds.MS.gene06358.t1;Parent=MS.gene06358.t1 |
chr3.1 | exon | 77242111 | 77242220 | 77242111 | ID=MS.gene06358.t1.exon13;Parent=MS.gene06358.t1 |
chr3.1 | CDS | 77242111 | 77242220 | 77242111 | ID=cds.MS.gene06358.t1;Parent=MS.gene06358.t1 |
chr3.1 | exon | 77242584 | 77242693 | 77242584 | ID=MS.gene06358.t1.exon14;Parent=MS.gene06358.t1 |
chr3.1 | CDS | 77242584 | 77242693 | 77242584 | ID=cds.MS.gene06358.t1;Parent=MS.gene06358.t1 |
chr3.1 | exon | 77242827 | 77242934 | 77242827 | ID=MS.gene06358.t1.exon15;Parent=MS.gene06358.t1 |
chr3.1 | CDS | 77242827 | 77242934 | 77242827 | ID=cds.MS.gene06358.t1;Parent=MS.gene06358.t1 |
chr3.1 | exon | 77243097 | 77243207 | 77243097 | ID=MS.gene06358.t1.exon16;Parent=MS.gene06358.t1 |
chr3.1 | CDS | 77243097 | 77243207 | 77243097 | ID=cds.MS.gene06358.t1;Parent=MS.gene06358.t1 |
chr3.1 | exon | 77243315 | 77243529 | 77243315 | ID=MS.gene06358.t1.exon17;Parent=MS.gene06358.t1 |
chr3.1 | CDS | 77243315 | 77243529 | 77243315 | ID=cds.MS.gene06358.t1;Parent=MS.gene06358.t1 |
chr3.1 | exon | 77243924 | 77244056 | 77243924 | ID=MS.gene06358.t1.exon18;Parent=MS.gene06358.t1 |
chr3.1 | CDS | 77243924 | 77244056 | 77243924 | ID=cds.MS.gene06358.t1;Parent=MS.gene06358.t1 |
Gene Sequence |
Protein sequence |