AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06273

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06273.t1 MTR_3g100310 98.837 430 5 0 31 460 88 517 0.0 884
MS.gene06273.t1 MTR_5g032100 75.943 424 102 0 37 460 80 503 0.0 690
MS.gene06273.t1 MTR_4g084570 38.194 432 234 9 36 460 144 549 2.79e-98 306
MS.gene06273.t1 MTR_2g016470 38.914 442 244 11 36 459 182 615 1.90e-97 305
MS.gene06273.t1 MTR_3g086570 35.682 440 251 7 26 460 137 549 4.10e-97 303
MS.gene06273.t1 MTR_3g005340 37.885 454 234 11 23 459 123 545 4.05e-96 301
MS.gene06273.t1 MTR_1g031590 36.547 446 250 9 22 460 129 548 2.35e-94 295
MS.gene06273.t1 MTR_5g059260 39.906 426 219 10 45 458 159 559 6.25e-93 293
MS.gene06273.t1 MTR_3g099480 34.298 449 237 7 31 459 128 538 1.07e-88 281
MS.gene06273.t1 MTR_4g082310 36.782 435 226 9 37 458 91 489 5.74e-88 278
MS.gene06273.t1 MTR_5g042200 36.283 452 232 12 27 458 62 477 1.49e-84 268
MS.gene06273.t1 MTR_5g064620 33.556 450 244 8 31 460 99 513 2.96e-84 268
MS.gene06273.t1 MTR_6g016015 34.989 443 237 11 28 457 103 507 8.06e-82 262
MS.gene06273.t1 MTR_4g110030 35.698 437 230 9 35 455 104 505 3.58e-81 260
MS.gene06273.t1 MTR_4g132590 35.780 436 260 9 41 460 63 494 3.66e-81 259
MS.gene06273.t1 MTR_2g059350 35.160 438 232 9 31 455 106 504 4.19e-81 260
MS.gene06273.t1 MTR_4g132590 35.780 436 260 9 41 460 162 593 5.17e-80 259
MS.gene06273.t1 MTR_5g099010 37.890 417 218 12 46 459 122 500 6.67e-80 259
MS.gene06273.t1 MTR_4g100810 35.681 426 233 12 37 458 101 489 7.00e-78 252
MS.gene06273.t1 MTR_4g125460 35.104 433 233 9 39 460 85 480 1.57e-77 250
MS.gene06273.t1 MTR_3g115220 36.667 420 226 12 42 458 110 492 2.59e-77 252
MS.gene06273.t1 MTR_3g086570 39.185 319 164 6 26 341 137 428 6.60e-77 247
MS.gene06273.t1 MTR_3g096020 34.672 473 231 11 22 458 156 586 2.37e-76 250
MS.gene06273.t1 MTR_4g125460 35.797 433 230 10 39 460 224 619 6.46e-76 249
MS.gene06273.t1 MTR_4g019210 32.870 432 238 9 40 458 229 621 8.74e-72 239
MS.gene06273.t1 MTR_1g102030 35.056 445 234 14 34 460 77 484 1.15e-71 235
MS.gene06273.t1 MTR_5g012770 35.597 427 223 13 36 458 116 494 2.43e-71 234
MS.gene06273.t1 MTR_5g081690 33.023 430 236 10 43 459 121 511 2.90e-70 232
MS.gene06273.t1 MTR_4g023030 34.442 421 228 9 46 458 236 616 3.76e-67 226
MS.gene06273.t1 MTR_3g026650 34.038 426 227 8 44 458 174 556 2.37e-66 223
MS.gene06273.t1 MTR_3g026650 33.989 356 184 6 44 391 174 486 1.46e-52 184
MS.gene06273.t1 MTR_1g101990 35.275 309 166 9 157 460 1 280 7.49e-48 167
MS.gene06273.t1 MTR_4g010990 29.978 457 244 17 9 458 51 438 1.69e-47 169
MS.gene06273.t1 MTR_4g010990 28.713 404 222 13 62 458 5 349 2.34e-39 145
MS.gene06273.t1 MTR_3g026650 31.970 269 132 6 44 304 174 399 2.21e-34 133
MS.gene06273.t1 MTR_3g092590 29.697 330 192 9 41 360 88 387 2.60e-33 132
MS.gene06273.t1 MTR_3g092590 29.697 330 192 9 41 360 88 387 8.44e-33 132
MS.gene06273.t1 MTR_7g017330 29.552 335 196 7 37 361 92 396 1.75e-31 128
MS.gene06273.t1 MTR_1g007390 29.530 298 170 9 71 358 124 391 1.12e-26 113
MS.gene06273.t1 MTR_7g064210 35.052 194 93 5 168 353 27 195 2.92e-25 107
MS.gene06273.t1 MTR_2g038320 25.490 357 196 10 33 385 82 372 7.81e-22 97.8
MS.gene06273.t1 MTR_4g008200 25.212 353 194 12 41 388 33 320 1.45e-21 96.3
MS.gene06273.t1 MTR_4g008200 25.429 350 191 12 41 385 84 368 3.91e-21 95.5
MS.gene06273.t1 MTR_1g101985 44.000 100 51 2 23 117 63 162 4.85e-21 90.5
MS.gene06273.t1 MTR_3g077710 55.072 69 12 1 248 316 4 53 4.53e-16 73.6
MS.gene06273.t1 MTR_8g017030 52.381 63 10 1 249 311 5 47 6.10e-13 64.7
MS.gene06273.t1 MTR_1g095680 40.217 92 43 2 184 275 16 95 2.72e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06273.t1 AT4G24530 76.941 425 98 0 35 459 93 517 0.0 699
MS.gene06273.t1 AT5G65470 75.765 425 101 1 36 458 78 502 0.0 689
MS.gene06273.t1 AT3G26370 35.484 434 247 7 32 460 152 557 1.73e-96 301
MS.gene06273.t1 AT1G35510 39.252 428 220 9 43 459 159 557 6.28e-96 300
MS.gene06273.t1 AT2G01480 37.762 429 232 10 39 459 151 552 8.78e-95 297
MS.gene06273.t1 AT1G38065 38.515 431 222 10 43 458 26 428 6.92e-93 289
MS.gene06273.t1 AT1G38065 38.515 431 222 10 43 458 36 438 1.46e-92 288
MS.gene06273.t1 AT1G14970 37.150 428 229 9 43 459 9 407 4.39e-92 285
MS.gene06273.t1 AT1G29200 38.991 436 240 8 41 459 68 494 8.95e-92 287
MS.gene06273.t1 AT1G29200 38.991 436 240 8 41 459 68 494 8.95e-92 287
MS.gene06273.t1 AT1G14970 37.150 428 229 9 43 459 35 433 1.10e-91 285
MS.gene06273.t1 AT1G38131 38.515 431 222 10 43 458 155 557 4.62e-91 288
MS.gene06273.t1 AT1G14970 37.150 428 229 9 43 459 155 553 4.35e-90 285
MS.gene06273.t1 AT1G29200 38.991 436 240 8 41 459 184 610 5.42e-90 286
MS.gene06273.t1 AT1G29200 38.679 424 242 7 49 459 2 420 1.87e-89 279
MS.gene06273.t1 AT1G62330 37.037 432 249 10 45 458 223 649 2.59e-86 277
MS.gene06273.t1 AT4G38390 37.170 417 225 9 46 460 126 507 1.12e-84 270
MS.gene06273.t1 AT1G20550 37.442 430 223 12 34 458 101 489 6.21e-83 266
MS.gene06273.t1 AT2G01480 37.186 398 218 8 39 430 151 522 6.73e-83 265
MS.gene06273.t1 AT3G02250 34.899 447 239 11 28 457 87 498 2.22e-82 263
MS.gene06273.t1 AT1G14020 37.063 429 221 10 43 458 91 483 3.19e-82 263
MS.gene06273.t1 AT1G22460 33.333 447 240 7 33 459 150 558 4.79e-82 264
MS.gene06273.t1 AT1G11990 36.136 440 253 9 45 460 177 612 1.76e-81 264
MS.gene06273.t1 AT1G76270 37.081 418 218 11 46 458 109 486 2.38e-81 262
MS.gene06273.t1 AT1G11990 36.385 426 234 8 45 460 192 590 4.06e-81 262
MS.gene06273.t1 AT5G15740 34.146 451 245 11 24 457 83 498 7.41e-81 259
MS.gene06273.t1 AT2G03280 37.296 429 219 11 43 457 88 480 1.12e-80 258
MS.gene06273.t1 AT5G64600 35.147 441 220 9 42 458 116 514 3.00e-78 253
MS.gene06273.t1 AT1G04910 35.550 436 234 13 34 459 77 475 1.86e-77 251
MS.gene06273.t1 AT2G37980 34.318 440 235 11 33 458 216 615 1.11e-76 252
MS.gene06273.t1 AT2G03280 35.088 456 219 12 43 457 88 507 1.07e-74 243
MS.gene06273.t1 AT4G16650 37.002 427 228 12 37 459 115 504 4.22e-74 243
MS.gene06273.t1 AT4G16650 37.002 427 228 12 37 459 115 504 4.22e-74 243
MS.gene06273.t1 AT5G35570 34.028 432 235 9 39 458 247 640 5.99e-74 245
MS.gene06273.t1 AT3G54100 32.112 464 259 10 12 458 187 611 3.34e-73 243
MS.gene06273.t1 AT2G44500 35.577 416 231 6 46 458 180 561 9.02e-71 234
MS.gene06273.t1 AT5G01100 31.489 470 267 10 5 458 178 608 3.57e-69 232
MS.gene06273.t1 AT3G07900 32.235 425 237 7 44 458 189 572 7.37e-67 224
MS.gene06273.t1 AT5G63390 32.877 438 253 7 27 459 148 549 2.43e-64 217
MS.gene06273.t1 AT3G26370 39.130 253 126 4 28 280 148 372 2.05e-59 200
MS.gene06273.t1 AT1G52630 28.477 453 250 18 12 459 53 436 1.92e-48 172
MS.gene06273.t1 AT1G52630 27.114 402 229 14 62 458 5 347 3.87e-40 147
MS.gene06273.t1 AT2G44500 34.749 259 135 4 46 304 180 404 1.73e-38 145
MS.gene06273.t1 AT3G03810 29.462 353 191 11 37 370 83 396 6.21e-35 138
MS.gene06273.t1 AT3G03810 29.462 353 191 11 37 370 83 396 6.21e-35 138
MS.gene06273.t1 AT3G30300 28.614 332 201 6 40 363 97 400 6.20e-32 129
MS.gene06273.t1 AT3G30300 28.614 332 201 6 40 363 97 400 6.20e-32 129
MS.gene06273.t1 AT3G21190 25.606 371 201 11 23 385 68 371 2.03e-21 96.7
MS.gene06273.t1 AT1G51630 25.067 371 205 11 22 385 68 372 9.94e-21 94.7

Find 101 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCCATTCAGCTTGTGATTT+TGG 0.068002 3.1:+78336334 MS.gene06273:CDS
TTGCACTCACAAGGTGATTT+TGG 0.177124 3.1:-78333210 None:intergenic
CAGACCAAACATGGCACTTT+TGG 0.192496 3.1:+78337098 MS.gene06273:CDS
GTTCCACACGTCAAGGAATT+AGG 0.225337 3.1:+78335502 MS.gene06273:CDS
GGATTGCTCCTAGCTGCTTT+GGG 0.249772 3.1:+78336490 MS.gene06273:CDS
TCAACTCTTCATCATTGAAT+TGG 0.253038 3.1:-78336429 None:intergenic
TTGCTGTTTCCTAAGCTTAT+CGG 0.260896 3.1:-78335602 None:intergenic
TGGATTGCTCCTAGCTGCTT+TGG 0.317788 3.1:+78336489 MS.gene06273:CDS
CTAAATACCGGCAGGTGATT+TGG 0.320489 3.1:+78336386 MS.gene06273:CDS
CAACTCTTCATCATTGAATT+GGG 0.327093 3.1:-78336428 None:intergenic
GAGACAATGGCCAAAGTTAA+TGG 0.337935 3.1:+78336798 MS.gene06273:CDS
CATCTTCATTTCTGCTTCCC+CGG 0.338849 3.1:+78336872 MS.gene06273:CDS
CACGGTAAGGTTTCCATCCT+TGG 0.348320 3.1:-78333184 None:intergenic
AGGAGCAATCCAATCTCTTC+GGG 0.388321 3.1:-78336478 None:intergenic
AGCTTCCTGGTGAGTACTCT+TGG 0.391715 3.1:+78334083 MS.gene06273:CDS
TTTCAGCGTGCGGTTCTTGA+TGG 0.397111 3.1:+78337159 MS.gene06273:CDS
ACCAAAATCACAAGCTGAAT+GGG 0.400153 3.1:-78336335 None:intergenic
TGATGAAGAGTTGAGAAATC+AGG 0.404730 3.1:+78336438 MS.gene06273:CDS
CGATGCCTTTCCATTAACTT+TGG 0.411811 3.1:-78336808 None:intergenic
AGCGCTGCCTGAAAAGTCTC+GGG 0.412884 3.1:+78333327 MS.gene06273:intron
GTATATAGAAAATGTATTGC+CGG 0.424831 3.1:+78334183 MS.gene06273:CDS
CACCAAAATCACAAGCTGAA+TGG 0.427593 3.1:-78336336 None:intergenic
TAGGAGCAATCCAATCTCTT+CGG 0.441117 3.1:-78336479 None:intergenic
CTAAGCTTATCGGCTTCCTC+TGG 0.444477 3.1:-78335592 None:intergenic
ATCCTCCATCAAGGAAAACT+TGG 0.444916 3.1:-78333357 None:intergenic
CATCCAGCGTCTCCGTTGTA+AGG 0.448928 3.1:+78335456 MS.gene06273:CDS
CCACTGACTCCCGAAGAGAT+TGG 0.458973 3.1:+78336469 MS.gene06273:CDS
CTCCCTTGGCTTACCAAGGA+TGG 0.461393 3.1:+78333171 MS.gene06273:CDS
TCTATAGTGAAAGAGCTTCC+TGG 0.462447 3.1:+78334070 MS.gene06273:CDS
TGGCCCAAAAGTGCCATGTT+TGG 0.467421 3.1:-78337102 None:intergenic
AATAGTCATTTGATTCTGCT+TGG 0.470389 3.1:-78335567 None:intergenic
ATACTGTCTGGCAAGATTCA+AGG 0.470439 3.1:+78333903 MS.gene06273:CDS
CAGCGCTGCCTGAAAAGTCT+CGG 0.472287 3.1:+78333326 MS.gene06273:intron
AGGTTTATGGTGGAAAAGCT+AGG 0.473316 3.1:+78336715 MS.gene06273:intron
TGCTCTTATTCTGAAATAGC+TGG 0.476445 3.1:-78337122 None:intergenic
CTACACATGCAATCAGGAGC+AGG 0.479880 3.1:-78337243 None:intergenic
AGCTTAGGAAACAGCAAAGC+GGG 0.481645 3.1:+78335608 MS.gene06273:CDS
CAGAGGAAGCCGATAAGCTT+AGG 0.483277 3.1:+78335593 MS.gene06273:CDS
ATCTTCATTTCTGCTTCCCC+GGG 0.487685 3.1:+78336873 MS.gene06273:CDS
ATACCGGCAGGTGATTTGGC+AGG 0.495911 3.1:+78336390 MS.gene06273:CDS
GGATTGAACCAGCAGAAGAT+GGG 0.496714 3.1:+78333376 MS.gene06273:CDS
TCTCATCGCTTGACATTCAA+CGG 0.499133 3.1:+78335421 MS.gene06273:CDS
AGGATTGAACCAGCAGAAGA+TGG 0.499974 3.1:+78333375 MS.gene06273:CDS
TTATGGTGGAAAAGCTAGGT+TGG 0.500381 3.1:+78336719 MS.gene06273:CDS
CAGTTCATGCTACTGCTGAT+TGG 0.502454 3.1:+78334161 MS.gene06273:CDS
CAATCAGCAGTAGCATGAAC+TGG 0.503297 3.1:-78334160 None:intergenic
AACCAATCTGTGGTCTCCCT+TGG 0.504923 3.1:+78333157 MS.gene06273:CDS
TAAGCTCTACACATGCAATC+AGG 0.507747 3.1:-78337249 None:intergenic
AGAGCATTGTGCATATTGCC+CGG 0.513384 3.1:-78336891 None:intergenic
GATTGCTCCTAGCTGCTTTG+GGG 0.517479 3.1:+78336491 MS.gene06273:CDS
GGGACAGATAAGATTAAGAA+AGG 0.523765 3.1:+78337197 MS.gene06273:CDS
GGGCAATATGCACAATGCTC+TGG 0.530119 3.1:+78336893 MS.gene06273:CDS
GAGCATTGTGCATATTGCCC+GGG 0.533147 3.1:-78336890 None:intergenic
TTCACATACCTCTGAAGTAC+CGG 0.538287 3.1:-78334202 None:intergenic
TGCTCTAGCTAAATACCGGC+AGG 0.538557 3.1:+78336378 MS.gene06273:CDS
AACTTGCTCTAGCTAAATAC+CGG 0.541940 3.1:+78336374 MS.gene06273:CDS
GATGAAGAGTTGAGAAATCA+GGG 0.542902 3.1:+78336439 MS.gene06273:CDS
TTCCCTGCCAAATCACCTGC+CGG 0.544202 3.1:-78336393 None:intergenic
TTTCCATCCTTGGTAAGCCA+AGG 0.550395 3.1:-78333174 None:intergenic
CCAATCTCTTCGGGAGTCAG+TGG 0.550645 3.1:-78336469 None:intergenic
AGCCAAGGGAGACCACAGAT+TGG 0.555485 3.1:-78333159 None:intergenic
CAGTATTCACTTCAAAATGC+GGG 0.558374 3.1:-78333886 None:intergenic
TGGTCTCCCTTGGCTTACCA+AGG 0.559168 3.1:+78333167 MS.gene06273:CDS
AGCTGGGTAATAAACCTTGT+GGG 0.559561 3.1:-78336545 None:intergenic
GTGCTCCAAGAGTACTCACC+AGG 0.562409 3.1:-78334088 None:intergenic
GAACTTTGTTCCACACGTCA+AGG 0.567553 3.1:+78335495 MS.gene06273:CDS
TGATGGACATAAGAACAGAC+AGG 0.569668 3.1:+78337176 MS.gene06273:CDS
TGACCTTACAACGGAGACGC+TGG 0.575199 3.1:-78335459 None:intergenic
TTCCATCCTTGGTAAGCCAA+GGG 0.578859 3.1:-78333173 None:intergenic
GCTGGTTCAATCCTCCATCA+AGG 0.585087 3.1:-78333366 None:intergenic
TCTAGTCTCTGCAGAGACAA+TGG 0.592187 3.1:+78336785 MS.gene06273:CDS
CGGAGACGCTGGATGTCTGA+TGG 0.599897 3.1:-78335448 None:intergenic
ACAAGAGAGTACTACGCCAC+AGG 0.599956 3.1:+78334109 MS.gene06273:CDS
TTCAGAATAAGAGCATAGGC+TGG 0.602241 3.1:+78337130 MS.gene06273:CDS
GAAGACTATCAGACCAAACA+TGG 0.603497 3.1:+78337089 MS.gene06273:CDS
GATTGAACCAGCAGAAGATG+GGG 0.605571 3.1:+78333377 MS.gene06273:CDS
AATGTCAAGCGATGAGAGAA+CGG 0.606541 3.1:-78335415 None:intergenic
TCTCCTAATTCCTTGACGTG+TGG 0.608300 3.1:-78335505 None:intergenic
TGTTGAACCCCAAAGCAGCT+AGG 0.608877 3.1:-78336498 None:intergenic
TACCGGCAGGTGATTTGGCA+GGG 0.608982 3.1:+78336391 MS.gene06273:CDS
CTATTTCAGAATAAGAGCAT+AGG 0.610443 3.1:+78337126 MS.gene06273:CDS
CTGGTCAGAATTTCAGCGTG+CGG 0.613267 3.1:+78337149 MS.gene06273:CDS
GCGATGAGAGAACGGTGCAA+TGG 0.614616 3.1:-78335407 None:intergenic
TGTAGCGAAGACGCTGAACA+AGG 0.614908 3.1:-78335531 None:intergenic
ACTTTATCTTGCTTCCCACA+AGG 0.615688 3.1:+78336531 MS.gene06273:CDS
CAATCTCTTCGGGAGTCAGT+GGG 0.624514 3.1:-78336468 None:intergenic
ATGTATTGCCGGTACTTCAG+AGG 0.627370 3.1:+78334194 MS.gene06273:CDS
AATGGCCAAAGTTAATGGAA+AGG 0.628911 3.1:+78336803 MS.gene06273:CDS
TACACATGCAATCAGGAGCA+GGG 0.643795 3.1:-78337242 None:intergenic
ACAGTATTCACTTCAAAATG+CGG 0.649662 3.1:-78333887 None:intergenic
TTGGAGTACAAACCAATCTG+TGG 0.659697 3.1:+78333147 MS.gene06273:CDS
ATCAAATGACTATTTGCCAG+AGG 0.666329 3.1:+78335576 MS.gene06273:CDS
TCTAGTAGCTCTAATGCCTG+TGG 0.667620 3.1:-78334125 None:intergenic
TCACTATAGATACTTCATCA+CGG 0.674157 3.1:-78334057 None:intergenic
AGCATTGTGCATATTGCCCG+GGG 0.675172 3.1:-78336889 None:intergenic
GCGCTGCCTGAAAAGTCTCG+GGG 0.688222 3.1:+78333328 MS.gene06273:intron
CTTCAAAGTTGACCTTACAA+CGG 0.697428 3.1:-78335468 None:intergenic
ATTGAACCAGCAGAAGATGG+GGG 0.706327 3.1:+78333378 MS.gene06273:CDS
GATGGACATAAGAACAGACA+GGG 0.720717 3.1:+78337177 MS.gene06273:CDS
ATGAAGAGTTGAGAAATCAG+GGG 0.726296 3.1:+78336440 MS.gene06273:CDS
AAGCTTAGGAAACAGCAAAG+CGG 0.733658 3.1:+78335607 MS.gene06273:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAAAATTGAAAAATTAT+TGG - chr3.1:78335869-78335888 None:intergenic 10.0%
!! TAAATTGTGATTTATATAAT+TGG - chr3.1:78336247-78336266 None:intergenic 10.0%
!! AAAAGTAATTAATACTTCAT+TGG - chr3.1:78333534-78333553 None:intergenic 15.0%
!! ATAAAAAATTGAAGACATAA+AGG - chr3.1:78333956-78333975 None:intergenic 15.0%
!! TAAAATTCTAAATATGCTTA+CGG + chr3.1:78335283-78335302 MS.gene06273:intron 15.0%
!! TCTAAGAAAGAAAAATTATT+TGG + chr3.1:78334936-78334955 MS.gene06273:intron 15.0%
!! TTTGTATTAAATGCAATTTA+AGG + chr3.1:78336187-78336206 MS.gene06273:intron 15.0%
!!! ATCTGTTTTAAATACTTTTT+TGG + chr3.1:78335998-78336017 MS.gene06273:intron 15.0%
!!! ATCTTTTAAATAGAAAATGT+GGG - chr3.1:78333818-78333837 None:intergenic 15.0%
!!! TATCTTTTAAATAGAAAATG+TGG - chr3.1:78333819-78333838 None:intergenic 15.0%
!!! TATTTTCTGTTATTTTCTAT+AGG - chr3.1:78334598-78334617 None:intergenic 15.0%
!!! TTATTTTTCTATTCATATTC+AGG + chr3.1:78333248-78333267 MS.gene06273:intron 15.0%
!! ACAGTTTAAGAAAAAATTCT+GGG + chr3.1:78334461-78334480 MS.gene06273:intron 20.0%
!! AGAATAGTGATTAATTGTTA+AGG - chr3.1:78333784-78333803 None:intergenic 20.0%
!! AGTTGTTAGATTGAAAAATA+TGG - chr3.1:78334769-78334788 None:intergenic 20.0%
!! ATTTATATAATTGGATCACA+AGG - chr3.1:78336238-78336257 None:intergenic 20.0%
!! TAATCCATTGGAAAAAAATA+AGG + chr3.1:78334436-78334455 MS.gene06273:intron 20.0%
!! TATGTTTCTTCAGAAAATTA+AGG + chr3.1:78336265-78336284 MS.gene06273:intron 20.0%
!! TGTGATATTTATAAGAATGA+AGG - chr3.1:78335239-78335258 None:intergenic 20.0%
!! TTAGATTGAAAAATATGGAT+GGG - chr3.1:78334764-78334783 None:intergenic 20.0%
!!! ATTCTATGTTTTTAGGTTTA+TGG + chr3.1:78336702-78336721 MS.gene06273:intron 20.0%
!!! TAAAATTTTGAATGTAACGT+TGG + chr3.1:78333859-78333878 MS.gene06273:CDS 20.0%
!!! TAAATGAGATTGTTTTGAAA+GGG + chr3.1:78333405-78333424 MS.gene06273:intron 20.0%
!!! TATGTGCAATTTTTTGTTTT+AGG + chr3.1:78335024-78335043 MS.gene06273:intron 20.0%
!!! TATTATTTATATAGCTTGTC+TGG - chr3.1:78334681-78334700 None:intergenic 20.0%
!!! TCAACACATTTTCTATATAA+TGG - chr3.1:78334291-78334310 None:intergenic 20.0%
!!! TGTTTTAATAACTCCAAATA+TGG + chr3.1:78335167-78335186 MS.gene06273:intron 20.0%
! AAAAACCTAAATGCATTTCA+GGG - chr3.1:78334267-78334286 None:intergenic 25.0%
! AAAAGACACTTAATACAAGA+CGG + chr3.1:78333711-78333730 MS.gene06273:intron 25.0%
! AACTATGTAAATTCCAACAT+TGG - chr3.1:78334999-78335018 None:intergenic 25.0%
! AATCTACAACATTTGAAAAC+AGG - chr3.1:78335358-78335377 None:intergenic 25.0%
! ACATAACAACTCTGTATAAA+TGG - chr3.1:78333984-78334003 None:intergenic 25.0%
! ACTATGTAAATTCCAACATT+GGG - chr3.1:78334998-78335017 None:intergenic 25.0%
! ATTATTGTCTCATAATCCAT+TGG + chr3.1:78334424-78334443 MS.gene06273:intron 25.0%
! CTATTTGAGTCAATAAACTA+TGG - chr3.1:78334866-78334885 None:intergenic 25.0%
! GACAGTTTAAGAAAAAATTC+TGG + chr3.1:78334460-78334479 MS.gene06273:intron 25.0%
! GATTATGAGACAATAATTGA+TGG - chr3.1:78334421-78334440 None:intergenic 25.0%
! GGGAAAAAAATTACAGTTTA+AGG + chr3.1:78334563-78334582 MS.gene06273:intron 25.0%
! GTATATAGAAAATGTATTGC+CGG + chr3.1:78334183-78334202 MS.gene06273:CDS 25.0%
! GTTAGATTGAAAAATATGGA+TGG - chr3.1:78334765-78334784 None:intergenic 25.0%
! TATATATCTCATTAGAAGCA+AGG + chr3.1:78333751-78333770 MS.gene06273:intron 25.0%
! TGTGATTACAGTATTATAAG+CGG + chr3.1:78335753-78335772 MS.gene06273:intron 25.0%
!! AGAGCATCAAAATTATATCA+TGG - chr3.1:78334351-78334370 None:intergenic 25.0%
!! ATTTTTCTTTCTTAGATCCT+AGG - chr3.1:78334932-78334951 None:intergenic 25.0%
!! CAAAAGATGTTTGGTTTAAA+CGG - chr3.1:78337034-78337053 None:intergenic 25.0%
!! CTTGTATTAAGTGTCTTTTA+AGG - chr3.1:78333710-78333729 None:intergenic 25.0%
!! CTTGTCTTTCTAATTTTACT+TGG + chr3.1:78335712-78335731 MS.gene06273:intron 25.0%
!! CTTTTCTTATCTTCCATAAA+AGG - chr3.1:78336765-78336784 None:intergenic 25.0%
!! TGGTTTAAACGGTAAATTTT+GGG - chr3.1:78337023-78337042 None:intergenic 25.0%
!! TTGGTTTAAACGGTAAATTT+TGG - chr3.1:78337024-78337043 None:intergenic 25.0%
!!! AAAATTATTTGGTTCTTCCA+AGG + chr3.1:78334947-78334966 MS.gene06273:intron 25.0%
!!! CTTTTTGCATTGTCATTTTA+TGG + chr3.1:78336663-78336682 MS.gene06273:intron 25.0%
!!! GTAAATGAGATTGTTTTGAA+AGG + chr3.1:78333404-78333423 MS.gene06273:intron 25.0%
!!! TGGATTGATTCTATGTTTTT+AGG + chr3.1:78336695-78336714 MS.gene06273:intron 25.0%
AAAACCTAAATGCATTTCAG+GGG - chr3.1:78334266-78334285 None:intergenic 30.0%
AATAGTCATTTGATTCTGCT+TGG - chr3.1:78335570-78335589 None:intergenic 30.0%
AATTTCCTTGCAGAAATGAA+GGG + chr3.1:78333431-78333450 MS.gene06273:intron 30.0%
ACAGTATTCACTTCAAAATG+CGG - chr3.1:78333890-78333909 None:intergenic 30.0%
ATCATGGAAATCCATTCTAA+GGG - chr3.1:78334335-78334354 None:intergenic 30.0%
ATGACACTTAATATGAGACT+GGG - chr3.1:78333475-78333494 None:intergenic 30.0%
ATTCAAGGTATATCCAATGT+GGG + chr3.1:78333918-78333937 MS.gene06273:intron 30.0%
CAAAAACCTAAATGCATTTC+AGG - chr3.1:78334268-78334287 None:intergenic 30.0%
CAACTCTTCATCATTGAATT+GGG - chr3.1:78336431-78336450 None:intergenic 30.0%
CAATTATATTTGCACTCACA+AGG - chr3.1:78333222-78333241 None:intergenic 30.0%
CTCATATTAAGTGTCATGTT+TGG + chr3.1:78333478-78333497 MS.gene06273:intron 30.0%
CTTGTGAGTGCAAATATAAT+TGG + chr3.1:78333220-78333239 MS.gene06273:intron 30.0%
GCAGTATAATGATATATCAG+TGG - chr3.1:78333559-78333578 None:intergenic 30.0%
GCCAGGATTCAAAAAATTAT+GGG + chr3.1:78335686-78335705 MS.gene06273:intron 30.0%
GTGACCATTAATTAACTAAC+AGG - chr3.1:78336293-78336312 None:intergenic 30.0%
GTTTAAGAAAAAATTCTGGG+TGG + chr3.1:78334464-78334483 MS.gene06273:intron 30.0%
TAATTTCCTTGCAGAAATGA+AGG + chr3.1:78333430-78333449 MS.gene06273:intron 30.0%
TATAACCAGTACTCTACAAT+AGG - chr3.1:78336124-78336143 None:intergenic 30.0%
TATCATGGAAATCCATTCTA+AGG - chr3.1:78334336-78334355 None:intergenic 30.0%
TCAACTCTTCATCATTGAAT+TGG - chr3.1:78336432-78336451 None:intergenic 30.0%
TCACTATAGATACTTCATCA+CGG - chr3.1:78334060-78334079 None:intergenic 30.0%
TGATTTAGTACTCTAACTCT+AGG + chr3.1:78334901-78334920 MS.gene06273:intron 30.0%
TGCCAGGATTCAAAAAATTA+TGG + chr3.1:78335685-78335704 MS.gene06273:intron 30.0%
! ATTGACTCAAATAGTTGTCA+GGG + chr3.1:78334872-78334891 MS.gene06273:intron 30.0%
! CTATTTCAGAATAAGAGCAT+AGG + chr3.1:78337126-78337145 MS.gene06273:CDS 30.0%
! GGTTTAAACGGTAAATTTTG+GGG - chr3.1:78337022-78337041 None:intergenic 30.0%
! TATATCCAAGTTTTCCTTGA+TGG + chr3.1:78333352-78333371 MS.gene06273:CDS 30.0%
! TCATTTTATGGAACTTAGTC+TGG + chr3.1:78336675-78336694 MS.gene06273:intron 30.0%
! TGCATATCTAAAACACTAAG+TGG - chr3.1:78335320-78335339 None:intergenic 30.0%
! TTTTCTCGTTGATACAGTTA+TGG + chr3.1:78335376-78335395 MS.gene06273:intron 30.0%
!! AAAAACAACACTGACTTGAT+TGG - chr3.1:78334542-78334561 None:intergenic 30.0%
!! AAGCACGTTATTTCCTTTTA+TGG + chr3.1:78336749-78336768 MS.gene06273:CDS 30.0%
!! TAAGCGGAATATAGTTTGTT+AGG + chr3.1:78335769-78335788 MS.gene06273:intron 30.0%
!! TATTGACTCAAATAGTTGTC+AGG + chr3.1:78334871-78334890 MS.gene06273:intron 30.0%
!!! ACCCATAATTTTTTGAATCC+TGG - chr3.1:78335690-78335709 None:intergenic 30.0%
!!! ATCAAGTCAGTGTTGTTTTT+TGG + chr3.1:78334542-78334561 MS.gene06273:intron 30.0%
!!! ATTTTGAAGTGAATACTGTC+TGG + chr3.1:78333891-78333910 MS.gene06273:CDS 30.0%
!!! CTATGTTTTTAGGTTTATGG+TGG + chr3.1:78336705-78336724 MS.gene06273:intron 30.0%
!!! GTCTCCTTATTTTTTTCCAA+TGG - chr3.1:78334443-78334462 None:intergenic 30.0%
!!! TCAAGTCAGTGTTGTTTTTT+GGG + chr3.1:78334543-78334562 MS.gene06273:intron 30.0%
AAAACTTCCCACATAATCCT+TGG - chr3.1:78334967-78334986 None:intergenic 35.0%
AAACCTAAATGCATTTCAGG+GGG - chr3.1:78334265-78334284 None:intergenic 35.0%
AACAACTCTGTATAAATGGC+TGG - chr3.1:78333980-78333999 None:intergenic 35.0%
AATATATCCTGTCATGAGCT+GGG - chr3.1:78336564-78336583 None:intergenic 35.0%
AATGGCCAAAGTTAATGGAA+AGG + chr3.1:78336803-78336822 MS.gene06273:CDS 35.0%
ACCAAAATCACAAGCTGAAT+GGG - chr3.1:78336338-78336357 None:intergenic 35.0%
ATCAAATGACTATTTGCCAG+AGG + chr3.1:78335576-78335595 MS.gene06273:CDS 35.0%
ATGAAGAGTTGAGAAATCAG+GGG + chr3.1:78336440-78336459 MS.gene06273:CDS 35.0%
CAAGAAATCTTCATTAAGCC+TGG - chr3.1:78334517-78334536 None:intergenic 35.0%
CAGTATTCACTTCAAAATGC+GGG - chr3.1:78333889-78333908 None:intergenic 35.0%
CATGACACTTAATATGAGAC+TGG - chr3.1:78333476-78333495 None:intergenic 35.0%
CTAAAACACTAAGTGGCTTA+TGG - chr3.1:78335313-78335332 None:intergenic 35.0%
CTGAAGATGCAAAAGATGTT+TGG - chr3.1:78337043-78337062 None:intergenic 35.0%
CTTCAAAGTTGACCTTACAA+CGG - chr3.1:78335471-78335490 None:intergenic 35.0%
GATGAAGAGTTGAGAAATCA+GGG + chr3.1:78336439-78336458 MS.gene06273:CDS 35.0%
GATTCAAGGTATATCCAATG+TGG + chr3.1:78333917-78333936 MS.gene06273:intron 35.0%
GGCTCCTGTTAGTTAATTAA+TGG + chr3.1:78336286-78336305 MS.gene06273:intron 35.0%
GGGACAGATAAGATTAAGAA+AGG + chr3.1:78337197-78337216 MS.gene06273:CDS 35.0%
TGATGAAGAGTTGAGAAATC+AGG + chr3.1:78336438-78336457 MS.gene06273:CDS 35.0%
TTGACTCAAATAGTTGTCAG+GGG + chr3.1:78334873-78334892 MS.gene06273:intron 35.0%
TTTATTGGTGCAAGACATGT+AGG + chr3.1:78336992-78337011 MS.gene06273:intron 35.0%
! AACTTGCTCTAGCTAAATAC+CGG + chr3.1:78336374-78336393 MS.gene06273:CDS 35.0%
! CAAACATCTTTTGCATCTTC+AGG + chr3.1:78337041-78337060 MS.gene06273:intron 35.0%
! GTCTTCATTTACATTTTGCC+AGG + chr3.1:78335669-78335688 MS.gene06273:intron 35.0%
! TTTTACCCTTCATTTCTGCA+AGG - chr3.1:78333439-78333458 None:intergenic 35.0%
!! ATTCAGCTTGTGATTTTGGT+GGG + chr3.1:78336338-78336357 MS.gene06273:CDS 35.0%
!! TCTAACTCTAGGATATACCT+AGG + chr3.1:78334912-78334931 MS.gene06273:intron 35.0%
!! TGCTCTTATTCTGAAATAGC+TGG - chr3.1:78337125-78337144 None:intergenic 35.0%
!! TTGCTGTTTCCTAAGCTTAT+CGG - chr3.1:78335605-78335624 None:intergenic 35.0%
!!! CAGATTTTTTGTTCTGCAGA+AGG - chr3.1:78336149-78336168 None:intergenic 35.0%
!!! CTTTTATGTAGAAGCATCAG+CGG - chr3.1:78335969-78335988 None:intergenic 35.0%
AACCAGTACTCTACAATAGG+AGG - chr3.1:78336121-78336140 None:intergenic 40.0%
AAGCTTAGGAAACAGCAAAG+CGG + chr3.1:78335607-78335626 MS.gene06273:CDS 40.0%
AATGTCAAGCGATGAGAGAA+CGG - chr3.1:78335418-78335437 None:intergenic 40.0%
ACCTTCCCAAAATACTGCAA+TGG - chr3.1:78335094-78335113 None:intergenic 40.0%
ACTTTATCTTGCTTCCCACA+AGG + chr3.1:78336531-78336550 MS.gene06273:CDS 40.0%
AGCTGGGTAATAAACCTTGT+GGG - chr3.1:78336548-78336567 None:intergenic 40.0%
ATAAGAATGAAGGTGAGCCT+TGG - chr3.1:78335229-78335248 None:intergenic 40.0%
ATACTGTCTGGCAAGATTCA+AGG + chr3.1:78333903-78333922 MS.gene06273:CDS 40.0%
ATCCTCCATCAAGGAAAACT+TGG - chr3.1:78333360-78333379 None:intergenic 40.0%
ATCCTCCTATTGTAGAGTAC+TGG + chr3.1:78336116-78336135 MS.gene06273:intron 40.0%
ATCTATTAAGACGATGCACC+AGG + chr3.1:78334496-78334515 MS.gene06273:intron 40.0%
CAATATATCCTGTCATGAGC+TGG - chr3.1:78336565-78336584 None:intergenic 40.0%
CACCAAAATCACAAGCTGAA+TGG - chr3.1:78336339-78336358 None:intergenic 40.0%
CAGCGCTGCAATAATCAAAA+GGG - chr3.1:78333314-78333333 None:intergenic 40.0%
CGATGCCTTTCCATTAACTT+TGG - chr3.1:78336811-78336830 None:intergenic 40.0%
CGCTGATGCTTCTACATAAA+AGG + chr3.1:78335967-78335986 MS.gene06273:intron 40.0%
GAGACAATGGCCAAAGTTAA+TGG + chr3.1:78336798-78336817 MS.gene06273:CDS 40.0%
GATGGACATAAGAACAGACA+GGG + chr3.1:78337177-78337196 MS.gene06273:CDS 40.0%
GCTAATACATTCACACACAC+AGG - chr3.1:78336061-78336080 None:intergenic 40.0%
GGTTCTTCCAAGGATTATGT+GGG + chr3.1:78334957-78334976 MS.gene06273:intron 40.0%
GTTGCAAAAATAGCCCACAT+TGG - chr3.1:78333934-78333953 None:intergenic 40.0%
TAAGCTCTACACATGCAATC+AGG - chr3.1:78337252-78337271 None:intergenic 40.0%
TACAGCACTACATTCGAACT+AGG - chr3.1:78335062-78335081 None:intergenic 40.0%
TAGGAGCAATCCAATCTCTT+CGG - chr3.1:78336482-78336501 None:intergenic 40.0%
TCCCAAAATACTGCAATGGA+AGG - chr3.1:78335090-78335109 None:intergenic 40.0%
TCTATAGTGAAAGAGCTTCC+TGG + chr3.1:78334070-78334089 MS.gene06273:CDS 40.0%
TCTCATCGCTTGACATTCAA+CGG + chr3.1:78335421-78335440 MS.gene06273:CDS 40.0%
TGATTGCATGTGTAGAGCTT+AGG + chr3.1:78337251-78337270 MS.gene06273:CDS 40.0%
TGGTTCTTCCAAGGATTATG+TGG + chr3.1:78334956-78334975 MS.gene06273:intron 40.0%
TGTGATCAGAAGGCCATATT+TGG - chr3.1:78335183-78335202 None:intergenic 40.0%
TTAGGCAACAACTTGCATGT+TGG + chr3.1:78335787-78335806 MS.gene06273:intron 40.0%
TTGGAGTACAAACCAATCTG+TGG + chr3.1:78333147-78333166 MS.gene06273:CDS 40.0%
TTGGTGTAACTACAGCTTGA+AGG + chr3.1:78336017-78336036 MS.gene06273:intron 40.0%
TTTATTACCCAGCTCATGAC+AGG + chr3.1:78336554-78336573 MS.gene06273:intron 40.0%
TTTCCCCCTGAAATGCATTT+AGG + chr3.1:78334259-78334278 MS.gene06273:intron 40.0%
TTTGCAACTAGCCCTTAGAA+TGG + chr3.1:78334321-78334340 MS.gene06273:intron 40.0%
! AACAGTCTTTTGCAGATGTG+AGG - chr3.1:78335151-78335170 None:intergenic 40.0%
! ACAAAGGCATAATACTGTGC+TGG - chr3.1:78334710-78334729 None:intergenic 40.0%
! ACATCTTTTGCATCTTCAGG+TGG + chr3.1:78337044-78337063 MS.gene06273:intron 40.0%
! AGGTTTATGGTGGAAAAGCT+AGG + chr3.1:78336715-78336734 MS.gene06273:intron 40.0%
! ATATAACCCCGAGACTTTTC+AGG - chr3.1:78333337-78333356 None:intergenic 40.0%
! ATCCAAGTTTTCCTTGATGG+AGG + chr3.1:78333355-78333374 MS.gene06273:CDS 40.0%
! CATTCAGCTTGTGATTTTGG+TGG + chr3.1:78336337-78336356 MS.gene06273:CDS 40.0%
! GCCTTCCATTGCAGTATTTT+GGG + chr3.1:78335086-78335105 MS.gene06273:intron 40.0%
! TGATGGACATAAGAACAGAC+AGG + chr3.1:78337176-78337195 MS.gene06273:CDS 40.0%
! TGCCTTCCATTGCAGTATTT+TGG + chr3.1:78335085-78335104 MS.gene06273:intron 40.0%
! TGTTCTCGTTTTCAGTCTGT+TGG + chr3.1:78333128-78333147 MS.gene06273:CDS 40.0%
! TTATGGTGGAAAAGCTAGGT+TGG + chr3.1:78336719-78336738 MS.gene06273:CDS 40.0%
! TTCAGAATAAGAGCATAGGC+TGG + chr3.1:78337130-78337149 MS.gene06273:CDS 40.0%
! TTGCACTCACAAGGTGATTT+TGG - chr3.1:78333213-78333232 None:intergenic 40.0%
! TTTTCTCACAGTCCCAATGT+TGG + chr3.1:78334983-78335002 MS.gene06273:intron 40.0%
!! ATTCTAAGGGCTAGTTGCAA+AGG - chr3.1:78334322-78334341 None:intergenic 40.0%
!! TCCATTGCAGTATTTTGGGA+AGG + chr3.1:78335090-78335109 MS.gene06273:intron 40.0%
!! TTCACATACCTCTGAAGTAC+CGG - chr3.1:78334205-78334224 None:intergenic 40.0%
!! TTCAGCTTGTGATTTTGGTG+GGG + chr3.1:78336339-78336358 MS.gene06273:CDS 40.0%
!! TTGCAGTATTTTGGGAAGGT+TGG + chr3.1:78335094-78335113 MS.gene06273:intron 40.0%
AGCTTAGGAAACAGCAAAGC+GGG + chr3.1:78335608-78335627 MS.gene06273:CDS 45.0%
AGGAGCAATCCAATCTCTTC+GGG - chr3.1:78336481-78336500 None:intergenic 45.0%
AGGATTGAACCAGCAGAAGA+TGG + chr3.1:78333375-78333394 MS.gene06273:CDS 45.0%
AGGGAACATGGCAGAATTTG+AGG - chr3.1:78334236-78334255 None:intergenic 45.0%
ATCTTCATTTCTGCTTCCCC+GGG + chr3.1:78336873-78336892 MS.gene06273:CDS 45.0%
ATGTATTGCCGGTACTTCAG+AGG + chr3.1:78334194-78334213 MS.gene06273:CDS 45.0%
ATTGAACCAGCAGAAGATGG+GGG + chr3.1:78333378-78333397 MS.gene06273:CDS 45.0%
CAATCAGCAGTAGCATGAAC+TGG - chr3.1:78334163-78334182 None:intergenic 45.0%
CAGTTCATGCTACTGCTGAT+TGG + chr3.1:78334161-78334180 MS.gene06273:CDS 45.0%
CATCTTCATTTCTGCTTCCC+CGG + chr3.1:78336872-78336891 MS.gene06273:CDS 45.0%
CTAAATACCGGCAGGTGATT+TGG + chr3.1:78336386-78336405 MS.gene06273:CDS 45.0%
CTCTTAGTGAACCTCCAAGT+AGG + chr3.1:78334797-78334816 MS.gene06273:intron 45.0%
GAACTTTGTTCCACACGTCA+AGG + chr3.1:78335495-78335514 MS.gene06273:CDS 45.0%
GAGCTGGGTAATAAACCTTG+TGG - chr3.1:78336549-78336568 None:intergenic 45.0%
GATTGAACCAGCAGAAGATG+GGG + chr3.1:78333377-78333396 MS.gene06273:CDS 45.0%
GCAGCGCTGCAATAATCAAA+AGG - chr3.1:78333315-78333334 None:intergenic 45.0%
GCATTTCAGGGGGAAAATGA+GGG - chr3.1:78334255-78334274 None:intergenic 45.0%
GGATTGAACCAGCAGAAGAT+GGG + chr3.1:78333376-78333395 MS.gene06273:CDS 45.0%
GTTCCACACGTCAAGGAATT+AGG + chr3.1:78335502-78335521 MS.gene06273:CDS 45.0%
GTTGCTACAGTGTGATCAGA+AGG - chr3.1:78335193-78335212 None:intergenic 45.0%
TACACATGCAATCAGGAGCA+GGG - chr3.1:78337245-78337264 None:intergenic 45.0%
TCTAGTCTCTGCAGAGACAA+TGG + chr3.1:78336785-78336804 MS.gene06273:CDS 45.0%
TCTCCTAATTCCTTGACGTG+TGG - chr3.1:78335508-78335527 None:intergenic 45.0%
TGCATTTCAGGGGGAAAATG+AGG - chr3.1:78334256-78334275 None:intergenic 45.0%
TTCCATCCTTGGTAAGCCAA+GGG - chr3.1:78333176-78333195 None:intergenic 45.0%
TTTCCATCCTTGGTAAGCCA+AGG - chr3.1:78333177-78333196 None:intergenic 45.0%
! CACTCACAAGGTGATTTTGG+AGG - chr3.1:78333210-78333229 None:intergenic 45.0%
! GCCCATTCAGCTTGTGATTT+TGG + chr3.1:78336334-78336353 MS.gene06273:CDS 45.0%
!! ACAAAAAGTGCCTGCCTACT+TGG - chr3.1:78334814-78334833 None:intergenic 45.0%
!! ACAAGGTGATTTTGGAGGCA+CGG - chr3.1:78333205-78333224 None:intergenic 45.0%
!! AGAGCATTGTGCATATTGCC+CGG - chr3.1:78336894-78336913 None:intergenic 45.0%
!! AGGACTGCGTTGTTTGTTGT+TGG + chr3.1:78333268-78333287 MS.gene06273:intron 45.0%
!! TCAGCTTGTGATTTTGGTGG+GGG + chr3.1:78336340-78336359 MS.gene06273:CDS 45.0%
!! TCTAGTAGCTCTAATGCCTG+TGG - chr3.1:78334128-78334147 None:intergenic 45.0%
!!! ATTTATTATATGTTATTTAT+TGG + chr3.1:78336977-78336996 MS.gene06273:intron 5.0%
AACCAATCTGTGGTCTCCCT+TGG + chr3.1:78333157-78333176 MS.gene06273:CDS 50.0%
ACAGACTGACAGGTAGCAAG+TGG - chr3.1:78334735-78334754 None:intergenic 50.0%
AGCATTGTGCATATTGCCCG+GGG - chr3.1:78336892-78336911 None:intergenic 50.0%
AGCTTCCTGGTGAGTACTCT+TGG + chr3.1:78334083-78334102 MS.gene06273:CDS 50.0%
AGGGGGAAAATGAGGGAACA+TGG - chr3.1:78334248-78334267 None:intergenic 50.0%
CAATCTCTTCGGGAGTCAGT+GGG - chr3.1:78336471-78336490 None:intergenic 50.0%
CACGGTAAGGTTTCCATCCT+TGG - chr3.1:78333187-78333206 None:intergenic 50.0%
CAGAGGAAGCCGATAAGCTT+AGG + chr3.1:78335593-78335612 MS.gene06273:CDS 50.0%
CAGGTAGCAAGTGGCAACAA+AGG - chr3.1:78334726-78334745 None:intergenic 50.0%
CTACACATGCAATCAGGAGC+AGG - chr3.1:78337246-78337265 None:intergenic 50.0%
CTGCCATATCCTGCACATGT+CGG - chr3.1:78336315-78336334 None:intergenic 50.0%
CTGGTCAGAATTTCAGCGTG+CGG + chr3.1:78337149-78337168 MS.gene06273:CDS 50.0%
GGGCAATATGCACAATGCTC+TGG + chr3.1:78336893-78336912 MS.gene06273:CDS 50.0%
TAATGGTCACCGACATGTGC+AGG + chr3.1:78336303-78336322 MS.gene06273:intron 50.0%
TACTTACCCCCATCTTCTGC+TGG - chr3.1:78333387-78333406 None:intergenic 50.0%
TAGTGAACCTCCAAGTAGGC+AGG + chr3.1:78334801-78334820 MS.gene06273:intron 50.0%
TCACCGACATGTGCAGGATA+TGG + chr3.1:78336309-78336328 MS.gene06273:intron 50.0%
TGAGCCTTGGCACGATGAAT+GGG - chr3.1:78335216-78335235 None:intergenic 50.0%
TGCTCTAGCTAAATACCGGC+AGG + chr3.1:78336378-78336397 MS.gene06273:CDS 50.0%
TGGATTGCTCCTAGCTGCTT+TGG + chr3.1:78336489-78336508 MS.gene06273:CDS 50.0%
TGTAGCGAAGACGCTGAACA+AGG - chr3.1:78335534-78335553 None:intergenic 50.0%
TGTTGAACCCCAAAGCAGCT+AGG - chr3.1:78336501-78336520 None:intergenic 50.0%
TTTCAGCGTGCGGTTCTTGA+TGG + chr3.1:78337159-78337178 MS.gene06273:CDS 50.0%
! GAGCATTGTGCATATTGCCC+GGG - chr3.1:78336893-78336912 None:intergenic 50.0%
! GATTGCTCCTAGCTGCTTTG+GGG + chr3.1:78336491-78336510 MS.gene06273:CDS 50.0%
! GCTGGTTCAATCCTCCATCA+AGG - chr3.1:78333369-78333388 None:intergenic 50.0%
! GGATTGCTCCTAGCTGCTTT+GGG + chr3.1:78336490-78336509 MS.gene06273:CDS 50.0%
!! AAAAGTGCCTGCCTACTTGG+AGG - chr3.1:78334811-78334830 None:intergenic 50.0%
!! ACAAGAGAGTACTACGCCAC+AGG + chr3.1:78334109-78334128 MS.gene06273:CDS 50.0%
!! CTAAGCTTATCGGCTTCCTC+TGG - chr3.1:78335595-78335614 None:intergenic 50.0%
!! GTGATTTTGGAGGCACGGTA+AGG - chr3.1:78333200-78333219 None:intergenic 50.0%
AGCCAAGGGAGACCACAGAT+TGG - chr3.1:78333162-78333181 None:intergenic 55.0%
AGCGCTGCCTGAAAAGTCTC+GGG + chr3.1:78333327-78333346 MS.gene06273:intron 55.0%
CAACCCCATTCATCGTGCCA+AGG + chr3.1:78335209-78335228 MS.gene06273:intron 55.0%
CAGCGCTGCCTGAAAAGTCT+CGG + chr3.1:78333326-78333345 MS.gene06273:intron 55.0%
CATCCAGCGTCTCCGTTGTA+AGG + chr3.1:78335456-78335475 MS.gene06273:CDS 55.0%
CCAATCTCTTCGGGAGTCAG+TGG - chr3.1:78336472-78336491 None:intergenic 55.0%
CTCCCTTGGCTTACCAAGGA+TGG + chr3.1:78333171-78333190 MS.gene06273:CDS 55.0%
GAGCCTTGGCACGATGAATG+GGG - chr3.1:78335215-78335234 None:intergenic 55.0%
GCGATGAGAGAACGGTGCAA+TGG - chr3.1:78335410-78335429 None:intergenic 55.0%
GTGAGCCTTGGCACGATGAA+TGG - chr3.1:78335217-78335236 None:intergenic 55.0%
TGACCTTACAACGGAGACGC+TGG - chr3.1:78335462-78335481 None:intergenic 55.0%
TGGGTGACAGACAGACTGAC+AGG - chr3.1:78334745-78334764 None:intergenic 55.0%
TGGTCTCCCTTGGCTTACCA+AGG + chr3.1:78333167-78333186 MS.gene06273:CDS 55.0%
TTCCCTGCCAAATCACCTGC+CGG - chr3.1:78336396-78336415 None:intergenic 55.0%
! ATACCGGCAGGTGATTTGGC+AGG + chr3.1:78336390-78336409 MS.gene06273:CDS 55.0%
! TACCGGCAGGTGATTTGGCA+GGG + chr3.1:78336391-78336410 MS.gene06273:CDS 55.0%
!! CCACTGACTCCCGAAGAGAT+TGG + chr3.1:78336469-78336488 MS.gene06273:CDS 55.0%
!! GTGCTCCAAGAGTACTCACC+AGG - chr3.1:78334091-78334110 None:intergenic 55.0%
CGGAGACGCTGGATGTCTGA+TGG - chr3.1:78335451-78335470 None:intergenic 60.0%
GCGCTGCCTGAAAAGTCTCG+GGG + chr3.1:78333328-78333347 MS.gene06273:intron 60.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 78333111 78337272 78333111 ID=MS.gene06273
chr3.1 mRNA 78333111 78337272 78333111 ID=MS.gene06273.t1;Parent=MS.gene06273
chr3.1 exon 78333111 78333222 78333111 ID=MS.gene06273.t1.exon1;Parent=MS.gene06273.t1
chr3.1 CDS 78333111 78333222 78333111 ID=cds.MS.gene06273.t1;Parent=MS.gene06273.t1
chr3.1 exon 78333329 78333399 78333329 ID=MS.gene06273.t1.exon2;Parent=MS.gene06273.t1
chr3.1 CDS 78333329 78333399 78333329 ID=cds.MS.gene06273.t1;Parent=MS.gene06273.t1
chr3.1 exon 78333836 78333924 78333836 ID=MS.gene06273.t1.exon3;Parent=MS.gene06273.t1
chr3.1 CDS 78333836 78333924 78333836 ID=cds.MS.gene06273.t1;Parent=MS.gene06273.t1
chr3.1 exon 78334012 78334215 78334012 ID=MS.gene06273.t1.exon4;Parent=MS.gene06273.t1
chr3.1 CDS 78334012 78334215 78334012 ID=cds.MS.gene06273.t1;Parent=MS.gene06273.t1
chr3.1 exon 78335393 78335663 78335393 ID=MS.gene06273.t1.exon5;Parent=MS.gene06273.t1
chr3.1 CDS 78335393 78335663 78335393 ID=cds.MS.gene06273.t1;Parent=MS.gene06273.t1
chr3.1 exon 78336325 78336552 78336325 ID=MS.gene06273.t1.exon6;Parent=MS.gene06273.t1
chr3.1 CDS 78336325 78336552 78336325 ID=cds.MS.gene06273.t1;Parent=MS.gene06273.t1
chr3.1 exon 78336717 78336914 78336717 ID=MS.gene06273.t1.exon7;Parent=MS.gene06273.t1
chr3.1 CDS 78336717 78336914 78336717 ID=cds.MS.gene06273.t1;Parent=MS.gene06273.t1
chr3.1 exon 78337063 78337272 78337063 ID=MS.gene06273.t1.exon8;Parent=MS.gene06273.t1
chr3.1 CDS 78337063 78337272 78337063 ID=cds.MS.gene06273.t1;Parent=MS.gene06273.t1
Gene Sequence

>MS.gene06273

ATGTTGTTACTTTTTTTTGTTCTCGTTTTCAGTCTGTTGGAGTACAAACCAATCTGTGGTCTCCCTTGGCTTACCAAGGATGGAAACCTTACCGTGCCTCCAAAATCACCTTGTGAGTGCAAATATAATTGGATTATTTATTTTTCTATTCATATTCAGGACTGCGTTGTTTGTTGTTGGTTTTTGATTTTTTGTTTATTCCCTTTTGATTATTGCAGCGCTGCCTGAAAAGTCTCGGGGTTATATCCAAGTTTTCCTTGATGGAGGATTGAACCAGCAGAAGATGGGGGTAAGTAAATGAGATTGTTTTGAAAGGGTATAATTTCCTTGCAGAAATGAAGGGTAAAAAAAAACTACTATGCCCAGTCTCATATTAAGTGTCATGTTTGGAATATTTACTTGTCTCGTAATTTTAAACTACCAATGAAGTATTAATTACTTTTTTCCACTGATATATCATTATACTGCATTGTGTCTAAACACATTTAACTACTCTACTACGTACTAACTACTATATGAATAAAATTACTTTAGCAGATGAAACTCATTTTATCATAGAAGTTAGCACACTCAATGATTTTCTTAAGTGTGCACAACCTTAAAAGACACTTAATACAAGACGGAGTAATAATTTATCATGTATATATCTCATTAGAAGCAAGGTAATTTTCCTTAACAATTAATCACTATTCTAATATCAGTCTCCCACATTTTCTATTTAAAAGATATGTGATGCTGTTGCTGTTGCTAAAATTTTGAATGTAACGTTGGTGATCCCGCATTTTGAAGTGAATACTGTCTGGCAAGATTCAAGGTATATCCAATGTGGGCTATTTTTGCAACCTTTATGTCTTCAATTTTTTATACCAGCCATTTATACAGAGTTGTTATGTTTCTGCAGTTCATTTGCAGATATATTTGACGTTGATCACTTCATTGATGTTCTCCGTGATGAAGTATCTATAGTGAAAGAGCTTCCTGGTGAGTACTCTTGGAGCACAAGAGAGTACTACGCCACAGGCATTAGAGCTACTAGAATTAAAACAGCACCAGTTCATGCTACTGCTGATTGGTATATAGAAAATGTATTGCCGGTACTTCAGAGGTATGTGAATAACTTAACCTCAAATTCTGCCATGTTCCCTCATTTTCCCCCTGAAATGCATTTAGGTTTTTGCCATTATATAGAAAATGTGTTGACTTAGAAGCCTTTGCAACTAGCCCTTAGAATGGATTTCCATGATATAATTTTGATGCTCTGTATGTATAAAATTCAATATTGAGCACAGACAATTAATCTCAATTTACCATCAATTATTGTCTCATAATCCATTGGAAAAAAATAAGGAGACAGTTTAAGAAAAAATTCTGGGTGGATTTATGAAATCTATTAAGACGATGCACCAGGCTTAATGAAGATTTCTTGTACCAATCAAGTCAGTGTTGTTTTTTGGGAAAAAAATTACAGTTTAAGGCTTCGCTTACCTATAGAAAATAACAGAAAATATCTAACTTTTAGTAGAATTAATAGACTAGAGACTTAATCTATTGAAAGTATAAACAGTTTCCAGACAAGCTATATAAATAATACTATTTCCAGCACAGTATTATGCCTTTGTTGCCACTTGCTACCTGTCAGTCTGTCTGTCACCCATCCATATTTTTCAATCTAACAACTACTCAGTGCTCTTAGTGAACCTCCAAGTAGGCAGGCACTTTTTGTTGTCAAATGCTTTTGTTTGTTATCACTTGCCATAGTTTATTGACTCAAATAGTTGTCAGGGGATAATTGATTTAGTACTCTAACTCTAGGATATACCTAGGATCTAAGAAAGAAAAATTATTTGGTTCTTCCAAGGATTATGTGGGAAGTTTTCTCACAGTCCCAATGTTGGAATTTACATAGTTTGAGTTATGTGCAATTTTTTGTTTTAGGAACTGCTTTCTTCCTAGTTCGAATGTAGTGCTGTAAAGTGCCTTCCATTGCAGTATTTTGGGAAGGTTGGACTCATCGTGAATATATTATAGTCATTCTTACCTCACATCTGCAAAAGACTGTTTTAATAACTCCAAATATGGCCTTCTGATCACACTGTAGCAACCCCATTCATCGTGCCAAGGCTCACCTTCATTCTTATAAATATCACACTGTAATTTATTCTTTGATGTATATAAAATTCTAAATATGCTTACGGAGTGCCATAAGCCACTTAGTGTTTTAGATATGCATTATTTACGTAAATACCTGTTTTCAAATGTTGTAGATTTTCTCGTTGATACAGTTATGGTGTTGCTGCCATTGCACCGTTCTCTCATCGCTTGACATTCAACGGCTTACCATCAGACATCCAGCGTCTCCGTTGTAAGGTCAACTTTGAAGCACTGAACTTTGTTCCACACGTCAAGGAATTAGGAGATATCCTTGTTCAGCGTCTTCGCTACAATTCTAGTATCAACCAAGCAGAATCAAATGACTATTTGCCAGAGGAAGCCGATAAGCTTAGGAAACAGCAAAGCGGGAAGTTTGTTGTGTTGCATCTGCGTTTTGATAAAGTATAGTCTTCATTTACATTTTGCCAGGATTCAAAAAATTATGGGTCACTTGTCTTTCTAATTTTACTTGGAAAGTCTTATTATTGCACTGTGATTACAGTATTATAAGCGGAATATAGTTTGTTAGGCAACAACTTGCATGTTGGTAGACTGACTGCTTCATATGTTTTAAGCAGAGTAATCAGTTCAAATATATTCAGCACCAATAATTTTTCAATTTTTGTTTCTGTAATTGTGTTTGCATGCGTGCTTGAATGATATGTTGATGATTTATGCTTCTGTTGTGAAGCAGCTAGTTGCTACCGCTGATGCTTCTACATAAAAGGCATCTTGAATCTGTTTTAAATACTTTTTTGGTGTAACTACAGCTTGAAGGAACTACGTATTTGTATTGCCTGTGTGTGTGAATGTATTAGCATGCTTGTATGTGTTCAAAATTTGAACGATGATTTATCCTCCTATTGTAGAGTACTGGTTATACACCTTCTGCAGAACAAAAAATCTGATTCAGTTGTGAAGAATTTTTGTATTAAATGCAATTTAAGGAACTGCACATTTCATCTTGAATTCTCCTTGTGATCCAATTATATAAATCACAATTTATGTTTCTTCAGAAAATTAAGGCTCCTGTTAGTTAATTAATGGTCACCGACATGTGCAGGATATGGCAGCCCATTCAGCTTGTGATTTTGGTGGGGGTAAAGCTGAGAAACTTGCTCTAGCTAAATACCGGCAGGTGATTTGGCAGGGAAGAGTATTGAATTCCCAATTCAATGATGAAGAGTTGAGAAATCAGGGGCGTTGCCCACTGACTCCCGAAGAGATTGGATTGCTCCTAGCTGCTTTGGGGTTCAACAACAGAACACGACTTTATCTTGCTTCCCACAAGGTTTATTACCCAGCTCATGACAGGATATATTGTTATTATGTAACAGCAAAGATTAATTGCAATATTCATTGCAATATTTATTGATAAATAATCTAGTACAGTTTTTACATCTTTTTGCATTGTCATTTTATGGAACTTAGTCTGGATTGATTCTATGTTTTTAGGTTTATGGTGGAAAAGCTAGGTTGGAAACTTTAAGCACGTTATTTCCTTTTATGGAAGATAAGAAAAGTCTAGTCTCTGCAGAGACAATGGCCAAAGTTAATGGAAAGGCATCGCTATTAGCTGCTGTTGATTATTATGTGAGCATGCACAGTGACATCTTCATTTCTGCTTCCCCGGGCAATATGCACAATGCTCTGGTAAGAGTCGTTGTTAAATATGTTTGAAACTTAACAACTGTGAAGAGTTACATCGCATAACTATTTATTATATGTTATTTATTGGTGCAAGACATGTAGGAAATCCCCAAAATTTACCGTTTAAACCAAACATCTTTTGCATCTTCAGGTGGCACATCATGCTTATAAGAATCTGAAGACTATCAGACCAAACATGGCACTTTTGGGCCAGCTATTTCAGAATAAGAGCATAGGCTGGTCAGAATTTCAGCGTGCGGTTCTTGATGGACATAAGAACAGACAGGGACAGATAAGATTAAGAAAGGAGAAGCAATCAATTTATACATACCCTGCTCCTGATTGCATGTGTAGAGCTTAG
Protein sequence

>MS.gene06273.t1

MLLLFFVLVFSLLEYKPICGLPWLTKDGNLTVPPKSPSLPEKSRGYIQVFLDGGLNQQKMGICDAVAVAKILNVTLVIPHFEVNTVWQDSSSFADIFDVDHFIDVLRDEVSIVKELPGEYSWSTREYYATGIRATRIKTAPVHATADWYIENVLPVLQSYGVAAIAPFSHRLTFNGLPSDIQRLRCKVNFEALNFVPHVKELGDILVQRLRYNSSINQAESNDYLPEEADKLRKQQSGKFVVLHLRFDKDMAAHSACDFGGGKAEKLALAKYRQVIWQGRVLNSQFNDEELRNQGRCPLTPEEIGLLLAALGFNNRTRLYLASHKVYGGKARLETLSTLFPFMEDKKSLVSAETMAKVNGKASLLAAVDYYVSMHSDIFISASPGNMHNALVAHHAYKNLKTIRPNMALLGQLFQNKSIGWSEFQRAVLDGHKNRQGQIRLRKEKQSIYTYPAPDCMCRA