AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062730.t1 MTR_1g021740 97.336 488 12 1 1 488 1 487 0.0 940
MS.gene062730.t1 MTR_8g069470 56.951 446 192 0 37 482 51 496 0.0 523
MS.gene062730.t1 MTR_5g033100 56.018 457 201 0 26 482 46 502 2.60e-179 513
MS.gene062730.t1 MTR_1g100180 49.897 485 234 3 6 482 5 488 9.42e-167 480
MS.gene062730.t1 MTR_5g032720 49.227 453 229 1 29 480 29 481 2.08e-156 454
MS.gene062730.t1 MTR_3g099700 50.647 464 228 1 21 483 31 494 1.25e-155 452
MS.gene062730.t1 MTR_2g088400 48.980 490 234 4 5 480 10 497 1.24e-154 449
MS.gene062730.t1 MTR_2g022980 47.835 485 244 3 5 480 9 493 3.42e-151 441
MS.gene062730.t1 MTR_4g048000 47.800 500 239 5 5 482 12 511 8.28e-151 440
MS.gene062730.t1 MTR_7g087410 47.072 461 244 0 28 488 23 483 5.47e-149 435
MS.gene062730.t1 MTR_5g032750 48.109 476 237 3 7 481 16 482 1.54e-147 431
MS.gene062730.t1 MTR_7g087400 46.087 460 245 2 22 481 18 474 1.05e-145 426
MS.gene062730.t1 MTR_3g099720 44.540 467 259 0 13 479 18 484 1.66e-142 418
MS.gene062730.t1 MTR_2g088400 48.444 450 216 4 5 440 10 457 9.31e-138 405
MS.gene062730.t1 MTR_6g027200 45.435 460 247 3 23 481 25 481 2.02e-136 403
MS.gene062730.t1 MTR_6g027190 47.598 458 238 2 25 481 13 469 4.48e-136 402
MS.gene062730.t1 MTR_7g087410 48.985 394 201 0 95 488 1 394 4.41e-133 391
MS.gene062730.t1 MTR_6g047610 41.807 476 273 3 5 480 2 473 2.33e-131 389
MS.gene062730.t1 MTR_7g087370 44.662 459 222 3 22 480 18 444 9.38e-130 384
MS.gene062730.t1 MTR_6g047640 42.227 476 272 2 5 480 2 474 2.28e-129 384
MS.gene062730.t1 MTR_7g087430 47.409 386 203 0 95 480 1 386 1.89e-126 374
MS.gene062730.t1 MTR_5g090290 45.629 469 251 2 15 479 22 490 1.05e-124 375
MS.gene062730.t1 MTR_6g047590 41.807 476 273 3 5 480 2 473 4.65e-124 370
MS.gene062730.t1 MTR_6g047640 40.126 476 263 3 5 480 2 455 4.39e-122 365
MS.gene062730.t1 MTR_8g063590 43.363 452 254 2 37 486 54 505 1.45e-113 345
MS.gene062730.t1 MTR_1g108810 38.972 467 275 5 13 471 6 470 1.09e-102 316
MS.gene062730.t1 MTR_6g081410 38.095 462 279 4 21 479 14 471 6.56e-100 308
MS.gene062730.t1 MTR_6g081780 39.440 464 266 6 21 477 14 469 3.43e-99 306
MS.gene062730.t1 MTR_5g087930 43.500 400 204 4 62 460 52 430 1.79e-96 299
MS.gene062730.t1 MTR_6g066380 37.901 467 283 4 17 477 6 471 1.95e-94 295
MS.gene062730.t1 MTR_7g082810 37.783 442 274 1 37 477 21 462 3.65e-93 291
MS.gene062730.t1 MTR_6g081300 38.530 449 269 3 37 481 11 456 1.63e-92 289
MS.gene062730.t1 MTR_6g081390 38.479 447 266 5 38 479 15 457 2.54e-88 278
MS.gene062730.t1 MTR_1g108840 36.511 493 295 8 5 488 9 492 1.82e-87 277
MS.gene062730.t1 MTR_6g081810 35.518 473 272 5 5 477 4 443 1.79e-86 273
MS.gene062730.t1 MTR_6g081240 38.530 449 264 8 28 469 1 444 2.04e-86 273
MS.gene062730.t1 MTR_8g106670 37.330 442 275 2 39 479 16 456 5.97e-86 273
MS.gene062730.t1 MTR_6g081400 36.689 447 274 5 38 479 18 460 7.21e-84 267
MS.gene062730.t1 MTR_6g004220 35.440 443 284 2 37 477 24 466 3.70e-82 263
MS.gene062730.t1 MTR_6g081310 38.274 452 259 7 43 477 2 450 5.10e-82 262
MS.gene062730.t1 MTR_1g108990 36.199 442 281 1 37 477 26 467 5.69e-79 254
MS.gene062730.t1 MTR_6g004220 35.402 435 279 2 37 469 31 465 5.88e-79 255
MS.gene062730.t1 MTR_2g078930 34.110 472 297 5 5 468 11 476 8.31e-77 249
MS.gene062730.t1 MTR_1g109060 34.842 442 287 1 37 477 25 466 2.41e-75 245
MS.gene062730.t1 MTR_2g078960 35.335 433 279 1 37 468 34 466 7.23e-75 244
MS.gene062730.t1 MTR_5g090280 37.530 413 223 4 95 479 1 406 2.12e-73 238
MS.gene062730.t1 MTR_1g109060 34.793 434 282 1 37 469 25 458 9.74e-73 238
MS.gene062730.t1 MTR_2g079020 33.410 434 286 2 37 468 38 470 4.17e-72 237
MS.gene062730.t1 MTR_2g078970 34.873 433 281 1 37 468 32 464 6.66e-72 236
MS.gene062730.t1 MTR_7g082800 34.715 386 251 1 95 479 1 386 2.21e-71 232
MS.gene062730.t1 MTR_5g010830 30.269 446 298 5 37 475 66 505 1.09e-60 208
MS.gene062730.t1 MTR_3g111020 28.390 472 329 4 13 478 26 494 7.06e-60 206
MS.gene062730.t1 MTR_1g101500 29.114 474 323 5 7 475 39 504 1.57e-58 202
MS.gene062730.t1 MTR_0039s0080 27.869 488 336 5 4 483 3 482 1.99e-58 201
MS.gene062730.t1 MTR_5g067460 27.902 448 312 4 37 478 56 498 9.14e-56 195
MS.gene062730.t1 MTR_6g004220 32.153 367 247 2 37 401 31 397 9.93e-51 179
MS.gene062730.t1 MTR_6g088805 26.237 465 334 4 11 474 7 463 6.11e-48 172
MS.gene062730.t1 MTR_2g078990 34.708 291 189 1 179 468 3 293 2.04e-46 164
MS.gene062730.t1 MTR_6g043810 27.494 451 313 5 37 475 24 472 3.02e-45 166
MS.gene062730.t1 MTR_6g043810 27.494 451 313 5 37 475 34 482 3.15e-45 166
MS.gene062730.t1 MTR_8g102430 26.651 439 301 3 37 474 24 442 3.22e-43 159
MS.gene062730.t1 MTR_5g011540 27.816 435 310 3 43 474 50 483 2.58e-42 157
MS.gene062730.t1 MTR_4g027920 25.435 460 320 5 27 473 147 596 9.89e-42 157
MS.gene062730.t1 MTR_6g004220 32.374 278 186 2 37 312 31 308 3.15e-38 142
MS.gene062730.t1 MTR_2g435930 23.013 478 347 4 19 477 2 477 2.56e-33 132
MS.gene062730.t1 MTR_2g079030 36.410 195 124 0 274 468 319 513 7.48e-32 128
MS.gene062730.t1 MTR_4g131290 50.820 61 30 0 108 168 13 73 4.22e-15 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062730.t1 AT1G47530 67.769 484 152 3 1 483 1 481 0.0 660
MS.gene062730.t1 AT1G47530 71.722 389 110 0 95 483 1 389 0.0 574
MS.gene062730.t1 AT3G26590 54.725 455 206 0 31 485 39 493 5.84e-180 514
MS.gene062730.t1 AT1G23300 56.319 451 197 0 31 481 38 488 7.72e-178 509
MS.gene062730.t1 AT5G38030 52.795 483 222 2 9 485 11 493 5.02e-177 506
MS.gene062730.t1 AT1G12950 54.646 452 205 0 31 482 61 512 1.60e-175 503
MS.gene062730.t1 AT4G00350 54.667 450 203 1 36 485 87 535 9.31e-172 494
MS.gene062730.t1 AT4G25640 51.153 477 224 3 15 483 4 479 3.03e-157 456
MS.gene062730.t1 AT4G25640 51.153 477 224 3 15 483 4 479 1.54e-156 455
MS.gene062730.t1 AT3G21690 49.362 470 235 2 14 480 27 496 4.93e-150 438
MS.gene062730.t1 AT3G26590 53.964 391 180 0 95 485 1 391 1.35e-149 433
MS.gene062730.t1 AT5G65380 49.138 464 235 1 21 483 21 484 3.35e-149 435
MS.gene062730.t1 AT1G61890 45.851 482 255 3 5 480 10 491 3.93e-145 425
MS.gene062730.t1 AT1G11670 47.661 449 234 1 36 483 49 497 2.00e-143 421
MS.gene062730.t1 AT4G25640 51.389 432 201 3 15 438 4 434 8.46e-143 418
MS.gene062730.t1 AT5G44050 48.584 459 233 3 24 480 27 484 3.45e-142 417
MS.gene062730.t1 AT1G33100 46.187 459 247 0 22 480 18 476 1.06e-141 416
MS.gene062730.t1 AT1G33110 45.852 458 248 0 23 480 22 479 4.52e-141 415
MS.gene062730.t1 AT1G61890 45.877 473 250 3 5 471 10 482 9.57e-141 414
MS.gene062730.t1 AT1G33090 46.070 458 247 0 23 480 22 479 7.75e-138 406
MS.gene062730.t1 AT5G10420 47.761 469 238 5 16 480 17 482 2.67e-137 405
MS.gene062730.t1 AT1G33080 44.760 458 253 0 23 480 22 479 3.53e-136 402
MS.gene062730.t1 AT1G33080 44.912 452 249 0 23 474 22 473 1.59e-133 395
MS.gene062730.t1 AT4G21910 43.841 479 258 4 12 480 23 500 1.69e-133 396
MS.gene062730.t1 AT4G21910 43.841 479 258 4 12 480 23 500 1.69e-133 396
MS.gene062730.t1 AT4G21910 45.740 446 240 2 36 480 54 498 1.85e-133 395
MS.gene062730.t1 AT4G21910 45.740 446 240 2 36 480 54 498 1.85e-133 395
MS.gene062730.t1 AT3G59030 46.137 453 239 2 37 488 51 499 1.97e-131 390
MS.gene062730.t1 AT4G21903 44.444 432 238 2 58 488 74 504 9.91e-129 384
MS.gene062730.t1 AT4G21903 44.917 423 231 2 58 479 74 495 1.52e-125 376
MS.gene062730.t1 AT1G61890 44.796 442 238 3 5 440 10 451 2.46e-125 374
MS.gene062730.t1 AT4G21903 45.570 395 214 1 95 488 1 395 3.23e-123 365
MS.gene062730.t1 AT5G17700 39.434 459 278 0 22 480 19 477 3.23e-115 348
MS.gene062730.t1 AT5G17700 39.434 459 278 0 22 480 19 477 3.23e-115 348
MS.gene062730.t1 AT3G03620 38.913 460 281 0 21 480 21 480 2.26e-113 344
MS.gene062730.t1 AT3G03620 38.913 460 281 0 21 480 21 480 2.26e-113 344
MS.gene062730.t1 AT1G33110 46.073 382 206 0 23 404 22 403 2.13e-111 335
MS.gene062730.t1 AT3G59030 45.082 366 200 1 37 401 51 416 2.84e-98 303
MS.gene062730.t1 AT5G52450 41.176 442 258 2 39 479 29 469 1.88e-97 302
MS.gene062730.t1 AT1G73700 40.257 467 268 6 15 477 6 465 1.13e-96 300
MS.gene062730.t1 AT2G34360 38.478 473 271 9 23 488 16 475 1.73e-89 282
MS.gene062730.t1 AT1G71140 36.771 446 273 3 37 477 26 467 1.46e-86 274
MS.gene062730.t1 AT5G17700 37.598 383 239 0 22 404 19 401 1.53e-84 266
MS.gene062730.t1 AT1G66760 32.285 477 306 5 5 477 6 469 6.00e-82 262
MS.gene062730.t1 AT1G15160 36.971 449 268 6 37 477 31 472 1.00e-80 259
MS.gene062730.t1 AT1G66780 35.129 427 272 2 54 477 52 476 1.68e-80 258
MS.gene062730.t1 AT3G23560 34.328 469 299 6 5 468 7 471 1.82e-80 258
MS.gene062730.t1 AT1G15150 35.730 445 279 4 37 477 31 472 7.68e-80 257
MS.gene062730.t1 AT1G66760 32.196 469 301 5 5 469 6 461 1.05e-79 256
MS.gene062730.t1 AT1G64820 33.781 447 281 5 39 477 31 470 3.37e-78 253
MS.gene062730.t1 AT2G04040 31.933 476 315 2 3 477 1 468 6.47e-78 251
MS.gene062730.t1 AT2G04080 32.063 446 302 1 33 477 23 468 9.79e-78 251
MS.gene062730.t1 AT2G34360 35.381 472 245 7 23 488 16 433 1.45e-77 249
MS.gene062730.t1 AT1G15170 35.449 457 278 7 36 483 33 481 1.14e-76 248
MS.gene062730.t1 AT2G04070 32.903 465 308 2 17 477 4 468 4.54e-75 244
MS.gene062730.t1 AT3G23550 33.839 461 298 4 15 468 3 463 1.05e-74 243
MS.gene062730.t1 AT2G04050 32.903 465 308 2 17 477 4 468 3.20e-74 242
MS.gene062730.t1 AT2G04080 31.963 438 297 1 33 469 23 460 4.69e-74 241
MS.gene062730.t1 AT2G04100 32.579 442 297 1 37 477 30 471 2.74e-71 234
MS.gene062730.t1 AT1G15180 35.526 456 277 7 37 483 35 482 2.29e-70 232
MS.gene062730.t1 AT2G04090 31.674 442 301 1 37 477 30 471 6.96e-70 231
MS.gene062730.t1 AT2G04100 32.339 436 294 1 37 471 30 465 9.15e-69 228
MS.gene062730.t1 AT1G15150 36.795 337 210 2 143 477 21 356 3.04e-66 218
MS.gene062730.t1 AT1G15170 36.599 347 209 4 143 483 21 362 1.20e-64 213
MS.gene062730.t1 AT1G58340 29.268 451 310 3 37 482 58 504 1.10e-58 202
MS.gene062730.t1 AT3G23560 32.587 402 262 6 5 401 7 404 3.90e-58 198
MS.gene062730.t1 AT1G66760 32.121 330 219 2 143 469 6 333 4.08e-58 196
MS.gene062730.t1 AT5G19700 26.752 471 332 3 17 474 4 474 4.38e-55 192
MS.gene062730.t1 AT1G66760 29.602 402 264 6 5 401 6 393 3.28e-52 182
MS.gene062730.t1 AT4G29140 26.609 466 341 1 11 475 30 495 1.46e-51 183
MS.gene062730.t1 AT2G38510 26.000 450 321 5 33 475 2 446 2.89e-46 168
MS.gene062730.t1 AT4G23030 29.550 467 316 6 21 479 15 476 4.94e-45 165
MS.gene062730.t1 AT1G71870 24.897 486 337 6 9 473 1 479 5.58e-45 165
MS.gene062730.t1 AT5G52050 26.386 451 313 2 37 474 35 479 4.61e-44 162
MS.gene062730.t1 AT5G49130 24.124 485 342 5 19 479 1 483 1.54e-39 150
MS.gene062730.t1 AT1G15180 35.472 265 160 4 143 401 21 280 9.35e-39 145
MS.gene062730.t1 AT4G22790 26.049 453 318 8 30 474 27 470 2.35e-35 138
MS.gene062730.t1 AT2G04066 38.017 121 75 0 357 477 43 163 1.16e-22 95.1

Find 120 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAAAATTGTTCACAAAAT+TGG 0.074388 1.4:+2672026 MS.gene062730:CDS
TATTGTTACCTTTCTATATT+TGG 0.101958 1.4:+2672611 MS.gene062730:CDS
TTCTAATATTGAAACTTAAT+TGG 0.102187 1.4:+2674031 MS.gene062730:CDS
GAACTTGGAGCAGGTGATTT+TGG 0.171137 1.4:+2674871 MS.gene062730:CDS
TGATTTGTTATCAGGGTATT+TGG 0.215741 1.4:+2675520 MS.gene062730:intron
TGGTTTCGCCTTTGGTTTCT+TGG 0.217826 1.4:+2672199 MS.gene062730:CDS
TGAAAATTGTTCACAAAATT+GGG 0.230895 1.4:+2672027 MS.gene062730:CDS
TTTGTGCTTGTAAGAACTTT+TGG 0.232502 1.4:-2673942 None:intergenic
TTGGGCTTCACATTTGGTTT+TGG 0.259862 1.4:+2675284 MS.gene062730:CDS
TATAGAAAGGTAACAATAAA+AGG 0.269573 1.4:-2672606 None:intergenic
TCTAATATTGAAACTTAATT+GGG 0.293407 1.4:+2674032 MS.gene062730:CDS
TTAATGAAGTAACAATTATA+AGG 0.295058 1.4:-2675581 None:intergenic
GTTGAAAATTCTGTTATTGC+TGG 0.307891 1.4:+2672179 MS.gene062730:CDS
GTTATTGCTGGTTTCGCCTT+TGG 0.310201 1.4:+2672191 MS.gene062730:CDS
CATTGGATGCTGTATCTATT+TGG 0.321661 1.4:+2674388 MS.gene062730:CDS
ATTGTTACCTTTCTATATTT+GGG 0.330112 1.4:+2672612 MS.gene062730:CDS
CTTGTAGCTTACATCAATCT+TGG 0.340357 1.4:+2675224 MS.gene062730:CDS
TAGCTTCAGCTGTTATGTTA+TGG 0.343938 1.4:+2674208 MS.gene062730:CDS
GTGATGGCAGCTTGGAGTTT+TGG 0.345028 1.4:+2674313 MS.gene062730:intron
CAGAAAGCCGTGTGAGGAAG+TGG 0.348907 1.4:+2676029 MS.gene062730:CDS
ATGATATTGGTGGTGATAAC+AGG 0.354451 1.4:+2674342 MS.gene062730:CDS
CTTGGATCCTACTATGTTGT+TGG 0.364506 1.4:+2675242 MS.gene062730:CDS
ATATTGTTGGGCTTCACATT+TGG 0.367678 1.4:+2675278 MS.gene062730:CDS
AGTAACAATTATAAGGATTA+TGG 0.368933 1.4:-2675574 None:intergenic
AAACTTAATTGGGGCTTAGT+TGG 0.382505 1.4:+2674042 MS.gene062730:CDS
GGAAAGTCCTGGTGATGTTA+TGG 0.383348 1.4:+2673965 MS.gene062730:CDS
GGTGGTGATAACAGGGCATT+TGG 0.388031 1.4:+2674350 MS.gene062730:CDS
TAGGGTTTAACGTTGCAATA+AGG 0.389226 1.4:+2674704 MS.gene062730:CDS
ACTCCAAGCACCATCTGATT+TGG 0.390160 1.4:-2674133 None:intergenic
TGGATTATCTTGGTGGCTAC+TGG 0.392460 1.4:+2672583 MS.gene062730:CDS
TGTTATCAGGGTATTTGGTC+AGG 0.396483 1.4:+2675525 MS.gene062730:intron
GGTATTTGGTCAGGTCTGAT+TGG 0.397825 1.4:+2675534 MS.gene062730:CDS
GATAATGCAGTTATGATTGT+TGG 0.406088 1.4:-2672083 None:intergenic
TTGTAGGCACATTTGCTTTG+TGG 0.411807 1.4:+2673878 MS.gene062730:intron
GCATTCACTTCTACGTTTGT+TGG 0.412634 1.4:+2672122 MS.gene062730:CDS
ACTCCCCTCTTGAAGCTTGT+TGG 0.415152 1.4:+2672637 MS.gene062730:CDS
AGGGCATTTGGCAAACCCTT+TGG 0.415152 1.4:+2674362 MS.gene062730:CDS
AAAGCATATGCAAATATTTG+TGG 0.422937 1.4:-2673907 None:intergenic
TTGTTACTTCATTAACCAAT+TGG 0.426915 1.4:+2675589 MS.gene062730:CDS
TGGTTGGCAACAGTTGGGTA+TGG 0.428241 1.4:+2672480 MS.gene062730:intron
CATTTGGTGCTGGACATATA+AGG 0.431874 1.4:+2672533 MS.gene062730:CDS
ACACTATGTGGACAAGCATT+TGG 0.438033 1.4:+2672517 MS.gene062730:CDS
AGCCTTCAACCAGTCTTGTC+TGG 0.438348 1.4:+2675072 MS.gene062730:CDS
TTACCAGCAGGGATATTGTT+GGG 0.441633 1.4:+2675266 MS.gene062730:CDS
TTAGGTGTTGCCATTGGAGC+TGG 0.441867 1.4:+2675191 MS.gene062730:intron
GGCAAACCCTTTGGTGCCAT+TGG 0.443751 1.4:+2674371 MS.gene062730:CDS
TGTTACATGTACCTCTTAGT+TGG 0.444285 1.4:+2674007 MS.gene062730:CDS
GAATTTACATGCAAAGATCA+TGG 0.447765 1.4:+2672563 MS.gene062730:CDS
TCATGGTGGTTGATTGTCAT+TGG 0.473305 1.4:+2674087 MS.gene062730:CDS
GCAAAGATCATGGATTATCT+TGG 0.476538 1.4:+2672573 MS.gene062730:CDS
GATTGCAGTATGAACATAAA+CGG 0.478370 1.4:+2674661 MS.gene062730:intron
GCAGTATGAACATAAACGGT+TGG 0.487468 1.4:+2674665 MS.gene062730:intron
AATATTAGAAGCCAACTAAG+AGG 0.488197 1.4:-2674018 None:intergenic
TATGTTGTTGGATTACCAGC+AGG 0.494429 1.4:+2675254 MS.gene062730:CDS
CAGTATGAACATAAACGGTT+GGG 0.497419 1.4:+2674666 MS.gene062730:intron
TGGTAATCCAACAACATAGT+AGG 0.500475 1.4:-2675249 None:intergenic
TGGGATATGATGATCGCGCT+AGG 0.504589 1.4:+2674685 MS.gene062730:CDS
ATTTGGTCAGGTCTGATTGG+AGG 0.508178 1.4:+2675537 MS.gene062730:CDS
CAATTACTCTCAACACATCA+TGG 0.508964 1.4:+2674070 MS.gene062730:CDS
TCACCAAATCAGATGGTGCT+TGG 0.510768 1.4:+2674130 MS.gene062730:CDS
ATTACCAGCAGGGATATTGT+TGG 0.517209 1.4:+2675265 MS.gene062730:CDS
GGTTGGCAACAGTTGGGTAT+GGG 0.521926 1.4:+2672481 MS.gene062730:intron
GTTGGGTATGGGAAGTGCAT+TGG 0.523324 1.4:+2672492 MS.gene062730:intron
AGTTGTTAGTACTATGATCA+TGG 0.530879 1.4:-2674953 None:intergenic
GATGAGATCGCAGAAGCTGC+TGG 0.531826 1.4:+2672667 MS.gene062730:CDS
TGCTGGACATATAAGGATGA+TGG 0.534475 1.4:+2672540 MS.gene062730:CDS
TCCCTCACATCAATATCCAT+TGG 0.534710 1.4:+2674922 MS.gene062730:CDS
AACCAGACAAGACTGGTTGA+AGG 0.537386 1.4:-2675074 None:intergenic
ACCAATGGATATTGATGTGA+GGG 0.538819 1.4:-2674923 None:intergenic
TAGCTTGAAGTGAACAATTG+AGG 0.540499 1.4:-2674988 None:intergenic
GGGTGGAGTCGAAGAAGCTA+TGG 0.541517 1.4:+2672048 MS.gene062730:CDS
ACAGCATCCAATGGCACCAA+AGG 0.544225 1.4:-2674378 None:intergenic
AAGCCCAACAATATCCCTGC+TGG 0.545074 1.4:-2675269 None:intergenic
ATTGTTCACTTCAAGCTATG+AGG 0.547129 1.4:+2674993 MS.gene062730:CDS
GTGATGTTATGGATATCAAT+AGG 0.548405 1.4:+2673976 MS.gene062730:CDS
CAAGATCAAGCTCGTTAACA+TGG 0.548506 1.4:-2672145 None:intergenic
GCATTATCTCAGTACTCGCT+TGG 0.549383 1.4:+2672098 MS.gene062730:CDS
TGTGACTAACCAGACAAGAC+TGG 0.551439 1.4:-2675081 None:intergenic
AAGAAGCTATGGAAAATAGC+TGG 0.552120 1.4:+2672059 MS.gene062730:CDS
GAAAGCCGTGTGAGGAAGTG+GGG 0.552917 1.4:+2676031 MS.gene062730:CDS
AGAAAGCCGTGTGAGGAAGT+GGG 0.557799 1.4:+2676030 MS.gene062730:CDS
AAGATCATGGATTATCTTGG+TGG 0.557828 1.4:+2672576 MS.gene062730:CDS
AGATTGCCAACCAGCTCCAA+TGG 0.558494 1.4:-2675201 None:intergenic
GGAGTTGCCCAAATATAGAA+AGG 0.559849 1.4:-2672619 None:intergenic
GTATCAAATGAACTTGGAGC+AGG 0.561306 1.4:+2674862 MS.gene062730:CDS
GTGCTTGGAGTGGATTCTCA+TGG 0.564381 1.4:+2674145 MS.gene062730:CDS
GTGAGAGTATCAAATGAACT+TGG 0.567071 1.4:+2674856 MS.gene062730:CDS
CTAATATTGAAACTTAATTG+GGG 0.574308 1.4:+2674033 MS.gene062730:CDS
ACAAGCACAAAGGAAAGTCC+TGG 0.574888 1.4:+2673954 MS.gene062730:CDS
TTCCTCCCCACTTCCTCACA+CGG 0.576423 1.4:-2676036 None:intergenic
AAATCAGATGGTGCTTGGAG+TGG 0.576701 1.4:+2674135 MS.gene062730:CDS
AATTGTTCACAAAATTGGGG+TGG 0.577615 1.4:+2672031 MS.gene062730:CDS
GAAAATTGTTCACAAAATTG+GGG 0.577933 1.4:+2672028 MS.gene062730:CDS
GGGATATGATGATCGCGCTA+GGG 0.580089 1.4:+2674686 MS.gene062730:CDS
CAGCATCCAATGGCACCAAA+GGG 0.581611 1.4:-2674377 None:intergenic
TTGGTACTTGATGATATTGG+TGG 0.583882 1.4:+2674332 MS.gene062730:CDS
GATCATGGCAACAACACCAA+TGG 0.586370 1.4:-2674938 None:intergenic
TTCAAGCTATGAGGTTGCAA+AGG 0.586968 1.4:+2675002 MS.gene062730:CDS
CTGTCCAACAAGCTTCAAGA+GGG 0.591989 1.4:-2672641 None:intergenic
TCCTAGTGTTGTTCATCATG+AGG 0.592021 1.4:+2671992 MS.gene062730:CDS
TGTGGACAAGCATTTGGTGC+TGG 0.598264 1.4:+2672523 MS.gene062730:CDS
ATGTTGTTGGATTACCAGCA+GGG 0.608904 1.4:+2675255 MS.gene062730:CDS
GCTGGACATATAAGGATGAT+GGG 0.608934 1.4:+2672541 MS.gene062730:CDS
TCCTCATGATGAACAACACT+AGG 0.609928 1.4:-2671993 None:intergenic
TTGACACTGTTATCTAGTAG+AGG 0.620462 1.4:-2671963 None:intergenic
AGGACTGTCGTCGATTGCCA+TGG 0.624295 1.4:-2671943 None:intergenic
CAAATAGATACAGCATCCAA+TGG 0.632386 1.4:-2674387 None:intergenic
AGTGCATTGGAGACACTATG+TGG 0.632754 1.4:+2672505 MS.gene062730:CDS
TTGATATCCATAACATCACC+AGG 0.635024 1.4:-2673972 None:intergenic
TCTGTCCAACAAGCTTCAAG+AGG 0.635759 1.4:-2672642 None:intergenic
CACCAATGGATATTGATGTG+AGG 0.636253 1.4:-2674924 None:intergenic
GTGTTGCCATTGGAGCTGGT+TGG 0.652264 1.4:+2675195 MS.gene062730:CDS
ATGAAGCAGAAAGCCGTGTG+AGG 0.654673 1.4:+2676023 MS.gene062730:CDS
TCATGATGAACAACACTAGG+AGG 0.658187 1.4:-2671990 None:intergenic
AAAAGTTCTTACAAGCACAA+AGG 0.665076 1.4:+2673944 MS.gene062730:CDS
TGATATTGGTGGTGATAACA+GGG 0.675304 1.4:+2674343 MS.gene062730:CDS
AGCCGTGTGAGGAAGTGGGG+AGG 0.676849 1.4:+2676034 MS.gene062730:CDS
TTTGCATACCAAGAAACCAA+AGG 0.681080 1.4:-2672207 None:intergenic
TGTCCAACAAGCTTCAAGAG+GGG 0.717689 1.4:-2672640 None:intergenic
TTACTCTCAACACATCATGG+TGG 0.773022 1.4:+2674073 MS.gene062730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAGTATAAATATTAGA+AGG + chr1.4:2675366-2675385 MS.gene062730:intron 10.0%
!! GTTTATAAATCATAAAATTT+AGG - chr1.4:2672447-2672466 None:intergenic 10.0%
!!! CAAATAAATAACTTTTTTTT+TGG + chr1.4:2675906-2675925 MS.gene062730:intron 10.0%
!!! TATAAACTTGTTTTTATTTT+TGG + chr1.4:2672460-2672479 MS.gene062730:intron 10.0%
!!! TTTTTTAATTGATTTCTAAA+AGG + chr1.4:2675751-2675770 MS.gene062730:intron 10.0%
!! AAGTTATTTATTTGTAGAAT+TGG - chr1.4:2675951-2675970 None:intergenic 15.0%
!! AGTTATTTATTTGTAGAATT+GGG - chr1.4:2675950-2675969 None:intergenic 15.0%
!! ATTAAATTCAAGAGAAATAT+GGG - chr1.4:2675332-2675351 None:intergenic 15.0%
!! CTTGTATTTAGAAAAAAAAA+TGG + chr1.4:2672883-2672902 MS.gene062730:intron 15.0%
!! TAATTTCATATCTTTATCTT+TGG + chr1.4:2675987-2676006 MS.gene062730:intron 15.0%
!! TATTAAATTCAAGAGAAATA+TGG - chr1.4:2675333-2675352 None:intergenic 15.0%
!! TCAACTTAATTAATATTTGA+TGG + chr1.4:2674260-2674279 MS.gene062730:intron 15.0%
!! TCTAATATTGAAACTTAATT+GGG + chr1.4:2674032-2674051 MS.gene062730:CDS 15.0%
!! TTAATGAAGTAACAATTATA+AGG - chr1.4:2675584-2675603 None:intergenic 15.0%
!! TTATTTATTTGAAGAACAAA+AGG - chr1.4:2675897-2675916 None:intergenic 15.0%
!! TTCTAATATTGAAACTTAAT+TGG + chr1.4:2674031-2674050 MS.gene062730:CDS 15.0%
!!! ATATTTTTTGTTTGTTAATG+AGG + chr1.4:2675406-2675425 MS.gene062730:intron 15.0%
!!! CATTTTTTTTTCTAAATACA+AGG - chr1.4:2672885-2672904 None:intergenic 15.0%
!!! TATTCCTATCATTTAAATTT+TGG + chr1.4:2672717-2672736 MS.gene062730:intron 15.0%
!!! TTATCAATTTTTCTTTTTGT+AGG + chr1.4:2673862-2673881 MS.gene062730:intron 15.0%
!! AAAAAAACAAGTGTAATGTA+CGG - chr1.4:2672254-2672273 None:intergenic 20.0%
!! AACTACTTAATGAAATTACT+CGG - chr1.4:2673191-2673210 None:intergenic 20.0%
!! AAGAGAAAAATTTACCAAAA+TGG - chr1.4:2673098-2673117 None:intergenic 20.0%
!! AGTAACAATTATAAGGATTA+TGG - chr1.4:2675577-2675596 None:intergenic 20.0%
!! AGTTTACATGTTAAAAACTT+CGG + chr1.4:2673346-2673365 MS.gene062730:intron 20.0%
!! ATATTTATTTGATCCAATTG+TGG + chr1.4:2673718-2673737 MS.gene062730:intron 20.0%
!! ATTAAAAATGTTGAATTGTG+TGG + chr1.4:2672294-2672313 MS.gene062730:intron 20.0%
!! ATTGTTACCTTTCTATATTT+GGG + chr1.4:2672612-2672631 MS.gene062730:CDS 20.0%
!! CTAATATTGAAACTTAATTG+GGG + chr1.4:2674033-2674052 MS.gene062730:CDS 20.0%
!! TAGTCCAAAATTTAAATGAT+AGG - chr1.4:2672724-2672743 None:intergenic 20.0%
!! TATAGAAAGGTAACAATAAA+AGG - chr1.4:2672609-2672628 None:intergenic 20.0%
!! TATTGTTACCTTTCTATATT+TGG + chr1.4:2672611-2672630 MS.gene062730:CDS 20.0%
!! TGAAAATTGTTCACAAAATT+GGG + chr1.4:2672027-2672046 MS.gene062730:CDS 20.0%
!! TTAAATTCAAGAGAAATATG+GGG - chr1.4:2675331-2675350 None:intergenic 20.0%
!!! AAATGTCTATCACTTTTATT+TGG - chr1.4:2674474-2674493 None:intergenic 20.0%
!!! AACTTGTTTTTATTTTTGGT+TGG + chr1.4:2672464-2672483 MS.gene062730:intron 20.0%
!!! ATTGAATTTTGAAAATGTGA+TGG + chr1.4:2674297-2674316 MS.gene062730:intron 20.0%
!!! TATCATTTAAATTTTGGACT+AGG + chr1.4:2672723-2672742 MS.gene062730:intron 20.0%
!!! TTTTTTTTTGGTACAAAAGA+GGG + chr1.4:2675918-2675937 MS.gene062730:intron 20.0%
! AAAAAAAAACCCAAACAAAC+GGG + chr1.4:2673049-2673068 MS.gene062730:intron 25.0%
! AAAGCATATGCAAATATTTG+TGG - chr1.4:2673910-2673929 None:intergenic 25.0%
! ATTAACCAATTGGAAAAAAG+AGG + chr1.4:2675599-2675618 MS.gene062730:CDS 25.0%
! CAAAAAAAAACCCAAACAAA+CGG + chr1.4:2673048-2673067 MS.gene062730:intron 25.0%
! CTGAAAATTGTTCACAAAAT+TGG + chr1.4:2672026-2672045 MS.gene062730:CDS 25.0%
! GAAAATTGTTCACAAAATTG+GGG + chr1.4:2672028-2672047 MS.gene062730:CDS 25.0%
! GATCGTTCAATCTAAATTAA+CGG + chr1.4:2673255-2673274 MS.gene062730:intron 25.0%
! TAAATTAACGGTCTAGATTA+TGG + chr1.4:2673267-2673286 MS.gene062730:intron 25.0%
! TTCAAAACTGAGCATTAATT+AGG + chr1.4:2674537-2674556 MS.gene062730:intron 25.0%
!! ATTTAAAATTTCCTAGCAAG+GGG - chr1.4:2673432-2673451 None:intergenic 25.0%
!! ATTTTGTGAACAATTTTCAG+TGG - chr1.4:2672026-2672045 None:intergenic 25.0%
!! CACAATTTAATTTCCACAAT+TGG - chr1.4:2673734-2673753 None:intergenic 25.0%
!! CATTTAAAATTTCCTAGCAA+GGG - chr1.4:2673433-2673452 None:intergenic 25.0%
!! TAAAGCTATGATAATGACTT+GGG + chr1.4:2673525-2673544 MS.gene062730:intron 25.0%
!! TAATGACCTGATCAATTTTA+TGG - chr1.4:2673786-2673805 None:intergenic 25.0%
!! TTGTTACTTCATTAACCAAT+TGG + chr1.4:2675589-2675608 MS.gene062730:CDS 25.0%
!!! ATACCTATGATTTGTTATCA+GGG + chr1.4:2675513-2675532 MS.gene062730:intron 25.0%
!!! CTTTTTTTTTGGTACAAAAG+AGG + chr1.4:2675917-2675936 MS.gene062730:intron 25.0%
!!! TATACCTATGATTTGTTATC+AGG + chr1.4:2675512-2675531 MS.gene062730:intron 25.0%
AAAAAAAACCCAAACAAACG+GGG + chr1.4:2673050-2673069 MS.gene062730:intron 30.0%
AAAAGTTCTTACAAGCACAA+AGG + chr1.4:2673944-2673963 MS.gene062730:CDS 30.0%
AACTGAGCATTAATTAGGTT+TGG + chr1.4:2674542-2674561 MS.gene062730:intron 30.0%
AAGATTCCACAACTAAACTT+AGG + chr1.4:2675782-2675801 MS.gene062730:intron 30.0%
AATATTAGAAGCCAACTAAG+AGG - chr1.4:2674021-2674040 None:intergenic 30.0%
ACAATGAGAATTTGGAGAAA+GGG - chr1.4:2674431-2674450 None:intergenic 30.0%
ACTGAGCATTAATTAGGTTT+GGG + chr1.4:2674543-2674562 MS.gene062730:intron 30.0%
AGATTCCACAACTAAACTTA+GGG + chr1.4:2675783-2675802 MS.gene062730:intron 30.0%
AGTGTAATGTACGGATAAAA+TGG - chr1.4:2672245-2672264 None:intergenic 30.0%
AGTTGTTAGTACTATGATCA+TGG - chr1.4:2674956-2674975 None:intergenic 30.0%
ATAAAAATTTGCAGCGTAAC+TGG + chr1.4:2673372-2673391 MS.gene062730:intron 30.0%
ATACCCTGATAACAAATCAT+AGG - chr1.4:2675519-2675538 None:intergenic 30.0%
ATGTTCTATCATAGTGAGTT+AGG + chr1.4:2675843-2675862 MS.gene062730:intron 30.0%
GAATTTACATGCAAAGATCA+TGG + chr1.4:2672563-2672582 MS.gene062730:CDS 30.0%
GATAATGCAGTTATGATTGT+TGG - chr1.4:2672086-2672105 None:intergenic 30.0%
GATTGCAGTATGAACATAAA+CGG + chr1.4:2674661-2674680 MS.gene062730:intron 30.0%
GTGATGTTATGGATATCAAT+AGG + chr1.4:2673976-2673995 MS.gene062730:CDS 30.0%
GTTGAAAATTCTGTTATTGC+TGG + chr1.4:2672179-2672198 MS.gene062730:CDS 30.0%
TCATTGTGCTATAGAAGTTA+TGG + chr1.4:2674444-2674463 MS.gene062730:intron 30.0%
TCGGTATAATGATGATAGAA+TGG - chr1.4:2673172-2673191 None:intergenic 30.0%
TCTATAGCACAATGAGAATT+TGG - chr1.4:2674439-2674458 None:intergenic 30.0%
TCTTTATCTTTGGATTTCAC+AGG + chr1.4:2675997-2676016 MS.gene062730:intron 30.0%
TTATGTTCATACTGCAATCA+TGG - chr1.4:2674660-2674679 None:intergenic 30.0%
TTCAAAGTAACAGTAACAAG+TGG - chr1.4:2673136-2673155 None:intergenic 30.0%
! AAAGCTATGATAATGACTTG+GGG + chr1.4:2673526-2673545 MS.gene062730:intron 30.0%
! ATTTTCATCACCAAATCAGA+TGG + chr1.4:2674123-2674142 MS.gene062730:CDS 30.0%
! GCATTTAAAATTTCCTAGCA+AGG - chr1.4:2673434-2673453 None:intergenic 30.0%
! GTAAAGCTATGATAATGACT+TGG + chr1.4:2673524-2673543 MS.gene062730:intron 30.0%
! TTTGTGCTTGTAAGAACTTT+TGG - chr1.4:2673945-2673964 None:intergenic 30.0%
!! ACTTGTTACTGTTACTTTGA+AGG + chr1.4:2673135-2673154 MS.gene062730:intron 30.0%
!! CATCTTTTCACTGGTTAAAA+GGG + chr1.4:2673308-2673327 MS.gene062730:intron 30.0%
!! CTTGTTACTGTTACTTTGAA+GGG + chr1.4:2673136-2673155 MS.gene062730:intron 30.0%
!! GTTTTGGTACTTGATGATAT+TGG + chr1.4:2674329-2674348 MS.gene062730:CDS 30.0%
!! TGATTTGTTATCAGGGTATT+TGG + chr1.4:2675520-2675539 MS.gene062730:intron 30.0%
!!! ACTAACCTCTTTTTTCCAAT+TGG - chr1.4:2675607-2675626 None:intergenic 30.0%
!!! GCATTTGTTGTTACTGTTTT+AGG + chr1.4:2675173-2675192 MS.gene062730:intron 30.0%
!!! GGGGAACTTTTTTTTTTTGA+GGG + chr1.4:2673545-2673564 MS.gene062730:intron 30.0%
!!! TGGGGAACTTTTTTTTTTTG+AGG + chr1.4:2673544-2673563 MS.gene062730:intron 30.0%
!!! TTTTTTTTGAGGGATGACTT+GGG + chr1.4:2673555-2673574 MS.gene062730:intron 30.0%
!!! TTTTTTTTTGAGGGATGACT+TGG + chr1.4:2673554-2673573 MS.gene062730:intron 30.0%
AAACTTAATTGGGGCTTAGT+TGG + chr1.4:2674042-2674061 MS.gene062730:CDS 35.0%
AAGAAGCTATGGAAAATAGC+TGG + chr1.4:2672059-2672078 MS.gene062730:CDS 35.0%
AATTGTTCACAAAATTGGGG+TGG + chr1.4:2672031-2672050 MS.gene062730:CDS 35.0%
ACCAATGGATATTGATGTGA+GGG - chr1.4:2674926-2674945 None:intergenic 35.0%
AGCGTCAAAAAGAAGATTCA+TGG - chr1.4:2675705-2675724 None:intergenic 35.0%
AGTTAGGATCATTAGGAAGT+TGG + chr1.4:2675859-2675878 MS.gene062730:intron 35.0%
ATATTGTTGGGCTTCACATT+TGG + chr1.4:2675278-2675297 MS.gene062730:CDS 35.0%
ATCAGGTCATTACACGATAA+TGG + chr1.4:2673794-2673813 MS.gene062730:intron 35.0%
ATTGTTCACTTCAAGCTATG+AGG + chr1.4:2674993-2675012 MS.gene062730:CDS 35.0%
CAAATAGATACAGCATCCAA+TGG - chr1.4:2674390-2674409 None:intergenic 35.0%
CAATTACTCTCAACACATCA+TGG + chr1.4:2674070-2674089 MS.gene062730:CDS 35.0%
CACAATGAGAATTTGGAGAA+AGG - chr1.4:2674432-2674451 None:intergenic 35.0%
CAGTATGAACATAAACGGTT+GGG + chr1.4:2674666-2674685 MS.gene062730:intron 35.0%
CATAGTGAGTTAGGATCATT+AGG + chr1.4:2675852-2675871 MS.gene062730:intron 35.0%
CATTGGATGCTGTATCTATT+TGG + chr1.4:2674388-2674407 MS.gene062730:CDS 35.0%
CGTTAGTATATCAAATGTCG+CGG + chr1.4:2672336-2672355 MS.gene062730:intron 35.0%
CTTGTAGCTTACATCAATCT+TGG + chr1.4:2675224-2675243 MS.gene062730:CDS 35.0%
GAGTGAATTTGCAAGCAATA+AGG + chr1.4:2675673-2675692 MS.gene062730:intron 35.0%
GATTCCACAACTAAACTTAG+GGG + chr1.4:2675784-2675803 MS.gene062730:intron 35.0%
TAGCTTCAGCTGTTATGTTA+TGG + chr1.4:2674208-2674227 MS.gene062730:CDS 35.0%
TAGCTTGAAGTGAACAATTG+AGG - chr1.4:2674991-2675010 None:intergenic 35.0%
TAGGGTTTAACGTTGCAATA+AGG + chr1.4:2674704-2674723 MS.gene062730:CDS 35.0%
TGGATTCTCGAAAAACTACT+TGG + chr1.4:2672903-2672922 MS.gene062730:intron 35.0%
TGGTAATCCAACAACATAGT+AGG - chr1.4:2675252-2675271 None:intergenic 35.0%
TGTGCACCATAAAATTGATC+AGG + chr1.4:2673777-2673796 MS.gene062730:intron 35.0%
TGTTACATGTACCTCTTAGT+TGG + chr1.4:2674007-2674026 MS.gene062730:CDS 35.0%
TTGACACTGTTATCTAGTAG+AGG - chr1.4:2671966-2671985 None:intergenic 35.0%
TTGATATCCATAACATCACC+AGG - chr1.4:2673975-2673994 None:intergenic 35.0%
TTTGCATACCAAGAAACCAA+AGG - chr1.4:2672210-2672229 None:intergenic 35.0%
! AAGATCATGGATTATCTTGG+TGG + chr1.4:2672576-2672595 MS.gene062730:CDS 35.0%
! ATCAAGTTCCATCTTTTCAC+TGG + chr1.4:2673299-2673318 MS.gene062730:intron 35.0%
! CCTTTTAACCAGTGAAAAGA+TGG - chr1.4:2673310-2673329 None:intergenic 35.0%
! GCAAAGATCATGGATTATCT+TGG + chr1.4:2672573-2672592 MS.gene062730:CDS 35.0%
! GCTTGTAAGAACTTTTGGAT+TGG - chr1.4:2673940-2673959 None:intergenic 35.0%
! TAATGGCTTGTGTGTTTGTT+TGG + chr1.4:2673811-2673830 MS.gene062730:intron 35.0%
! TGGAATAGCTTCTCATTTTG+AGG + chr1.4:2672923-2672942 MS.gene062730:intron 35.0%
! TTGGTACTTGATGATATTGG+TGG + chr1.4:2674332-2674351 MS.gene062730:CDS 35.0%
!! ATAGGAAGGTGTTGCTATAT+GGG - chr1.4:2673408-2673427 None:intergenic 35.0%
!! ATGATATTGGTGGTGATAAC+AGG + chr1.4:2674342-2674361 MS.gene062730:CDS 35.0%
!! CCATCTTTTCACTGGTTAAA+AGG + chr1.4:2673307-2673326 MS.gene062730:intron 35.0%
!! GTGAGAGTATCAAATGAACT+TGG + chr1.4:2674856-2674875 MS.gene062730:CDS 35.0%
!! TGATATTGGTGGTGATAACA+GGG + chr1.4:2674343-2674362 MS.gene062730:CDS 35.0%
!!! ATTTTTGGTTGGCAACAGTT+GGG + chr1.4:2672475-2672494 MS.gene062730:intron 35.0%
!!! TATTTTTGGTTGGCAACAGT+TGG + chr1.4:2672474-2672493 MS.gene062730:intron 35.0%
!!! TTTTTTTGAGGGATGACTTG+GGG + chr1.4:2673556-2673575 MS.gene062730:intron 35.0%
ACACTATGTGGACAAGCATT+TGG + chr1.4:2672517-2672536 MS.gene062730:CDS 40.0%
ATGTTGTTGGATTACCAGCA+GGG + chr1.4:2675255-2675274 MS.gene062730:CDS 40.0%
ATTACCAGCAGGGATATTGT+TGG + chr1.4:2675265-2675284 MS.gene062730:CDS 40.0%
CAAGATCAAGCTCGTTAACA+TGG - chr1.4:2672148-2672167 None:intergenic 40.0%
CACCAATGGATATTGATGTG+AGG - chr1.4:2674927-2674946 None:intergenic 40.0%
CGGTCTAGATTATGGCTATA+TGG + chr1.4:2673275-2673294 MS.gene062730:intron 40.0%
CTTGGATCCTACTATGTTGT+TGG + chr1.4:2675242-2675261 MS.gene062730:CDS 40.0%
GCAGTATGAACATAAACGGT+TGG + chr1.4:2674665-2674684 MS.gene062730:intron 40.0%
GCATTCACTTCTACGTTTGT+TGG + chr1.4:2672122-2672141 MS.gene062730:CDS 40.0%
GCTGGACATATAAGGATGAT+GGG + chr1.4:2672541-2672560 MS.gene062730:CDS 40.0%
GGAGTTGCCCAAATATAGAA+AGG - chr1.4:2672622-2672641 None:intergenic 40.0%
GTATCAAATGAACTTGGAGC+AGG + chr1.4:2674862-2674881 MS.gene062730:CDS 40.0%
TAAACTTAGGGGTCCTTCAA+GGG + chr1.4:2675795-2675814 MS.gene062730:intron 40.0%
TATGTTGTTGGATTACCAGC+AGG + chr1.4:2675254-2675273 MS.gene062730:CDS 40.0%
TCATCCAAGTGCAGTATGTA+AGG + chr1.4:2674584-2674603 MS.gene062730:intron 40.0%
TCATGATGAACAACACTAGG+AGG - chr1.4:2671993-2672012 None:intergenic 40.0%
TCATGGTGGTTGATTGTCAT+TGG + chr1.4:2674087-2674106 MS.gene062730:CDS 40.0%
TCCCTCACATCAATATCCAT+TGG + chr1.4:2674922-2674941 MS.gene062730:CDS 40.0%
TCCTCATGATGAACAACACT+AGG - chr1.4:2671996-2672015 None:intergenic 40.0%
TCCTTCAAGGGATGAGAAAA+TGG + chr1.4:2675807-2675826 MS.gene062730:intron 40.0%
TGAGAATTTGGAGAAAGGGA+TGG - chr1.4:2674427-2674446 None:intergenic 40.0%
TGCTGGACATATAAGGATGA+TGG + chr1.4:2672540-2672559 MS.gene062730:CDS 40.0%
TTACCAGCAGGGATATTGTT+GGG + chr1.4:2675266-2675285 MS.gene062730:CDS 40.0%
TTACTCTCAACACATCATGG+TGG + chr1.4:2674073-2674092 MS.gene062730:CDS 40.0%
TTCAAGCTATGAGGTTGCAA+AGG + chr1.4:2675002-2675021 MS.gene062730:CDS 40.0%
TTCTCCTTACATACTGCACT+TGG - chr1.4:2674591-2674610 None:intergenic 40.0%
TTGAAAATGTGATGGCAGCT+TGG + chr1.4:2674305-2674324 MS.gene062730:intron 40.0%
TTGTAGGCACATTTGCTTTG+TGG + chr1.4:2673878-2673897 MS.gene062730:intron 40.0%
! TCCATTTTCTCATCCCTTGA+AGG - chr1.4:2675811-2675830 None:intergenic 40.0%
! TCCTAGTGTTGTTCATCATG+AGG + chr1.4:2671992-2672011 MS.gene062730:CDS 40.0%
! TGTTATCAGGGTATTTGGTC+AGG + chr1.4:2675525-2675544 MS.gene062730:intron 40.0%
!! ACTGTTTTAGGTGTTGCCAT+TGG + chr1.4:2675185-2675204 MS.gene062730:intron 40.0%
!! CACAACAATGCAAAAGTGCT+AGG - chr1.4:2674508-2674527 None:intergenic 40.0%
!! CATAGGAAGGTGTTGCTATA+TGG - chr1.4:2673409-2673428 None:intergenic 40.0%
!! CATTTGGTGCTGGACATATA+AGG + chr1.4:2672533-2672552 MS.gene062730:CDS 40.0%
!! TAGGAAGGTGTTGCTATATG+GGG - chr1.4:2673407-2673426 None:intergenic 40.0%
!! TTGGGCTTCACATTTGGTTT+TGG + chr1.4:2675284-2675303 MS.gene062730:CDS 40.0%
AAATCAGATGGTGCTTGGAG+TGG + chr1.4:2674135-2674154 MS.gene062730:CDS 45.0%
AATTCTAGGCCCCGTTTGTT+TGG - chr1.4:2673062-2673081 None:intergenic 45.0%
ACAAGCACAAAGGAAAGTCC+TGG + chr1.4:2673954-2673973 MS.gene062730:CDS 45.0%
ACTCCAAGCACCATCTGATT+TGG - chr1.4:2674136-2674155 None:intergenic 45.0%
AGGACCCCTAAGTTTAGTTG+TGG - chr1.4:2675791-2675810 None:intergenic 45.0%
AGTGCATTGGAGACACTATG+TGG + chr1.4:2672505-2672524 MS.gene062730:CDS 45.0%
ATTCTAGGCCCCGTTTGTTT+GGG - chr1.4:2673061-2673080 None:intergenic 45.0%
ATTTGGTCAGGTCTGATTGG+AGG + chr1.4:2675537-2675556 MS.gene062730:CDS 45.0%
CTAAACTTAGGGGTCCTTCA+AGG + chr1.4:2675794-2675813 MS.gene062730:intron 45.0%
CTGTCCAACAAGCTTCAAGA+GGG - chr1.4:2672644-2672663 None:intergenic 45.0%
GATCATGGCAACAACACCAA+TGG - chr1.4:2674941-2674960 None:intergenic 45.0%
GATTCGCTGCAGTCAATTCT+AGG - chr1.4:2673076-2673095 None:intergenic 45.0%
GCATTATCTCAGTACTCGCT+TGG + chr1.4:2672098-2672117 MS.gene062730:CDS 45.0%
GGTATTTGGTCAGGTCTGAT+TGG + chr1.4:2675534-2675553 MS.gene062730:CDS 45.0%
TCACCAAATCAGATGGTGCT+TGG + chr1.4:2674130-2674149 MS.gene062730:CDS 45.0%
TCTGTCCAACAAGCTTCAAG+AGG - chr1.4:2672645-2672664 None:intergenic 45.0%
TGTCCAACAAGCTTCAAGAG+GGG - chr1.4:2672643-2672662 None:intergenic 45.0%
TGTGACTAACCAGACAAGAC+TGG - chr1.4:2675084-2675103 None:intergenic 45.0%
! AACCAGACAAGACTGGTTGA+AGG - chr1.4:2675077-2675096 None:intergenic 45.0%
! AATTTCCTAGCAAGGGGCAT+AGG - chr1.4:2673426-2673445 None:intergenic 45.0%
! GAACTTGGAGCAGGTGATTT+TGG + chr1.4:2674871-2674890 MS.gene062730:CDS 45.0%
! GGAAAGTCCTGGTGATGTTA+TGG + chr1.4:2673965-2673984 MS.gene062730:CDS 45.0%
! TGACTGCAGCGAATCCATTT+TGG + chr1.4:2673081-2673100 MS.gene062730:intron 45.0%
! TGGATTATCTTGGTGGCTAC+TGG + chr1.4:2672583-2672602 MS.gene062730:CDS 45.0%
! TGGTTTCGCCTTTGGTTTCT+TGG + chr1.4:2672199-2672218 MS.gene062730:CDS 45.0%
!! AGGAAGGTGTTGCTATATGG+GGG - chr1.4:2673406-2673425 None:intergenic 45.0%
!! GTTATTGCTGGTTTCGCCTT+TGG + chr1.4:2672191-2672210 MS.gene062730:CDS 45.0%
!!! CACATTTGGTTTTGGAGCAG+AGG + chr1.4:2675292-2675311 MS.gene062730:CDS 45.0%
AAGCCCAACAATATCCCTGC+TGG - chr1.4:2675272-2675291 None:intergenic 50.0%
ACAGCATCCAATGGCACCAA+AGG - chr1.4:2674381-2674400 None:intergenic 50.0%
ACTCCCCTCTTGAAGCTTGT+TGG + chr1.4:2672637-2672656 MS.gene062730:CDS 50.0%
AGAAAGCCGTGTGAGGAAGT+GGG + chr1.4:2676030-2676049 MS.gene062730:CDS 50.0%
AGATTGCCAACCAGCTCCAA+TGG - chr1.4:2675204-2675223 None:intergenic 50.0%
ATGAAGCAGAAAGCCGTGTG+AGG + chr1.4:2676023-2676042 MS.gene062730:CDS 50.0%
CAGCATCCAATGGCACCAAA+GGG - chr1.4:2674380-2674399 None:intergenic 50.0%
GGGATATGATGATCGCGCTA+GGG + chr1.4:2674686-2674705 MS.gene062730:CDS 50.0%
GGTTGGCAACAGTTGGGTAT+GGG + chr1.4:2672481-2672500 MS.gene062730:intron 50.0%
TGGGATATGATGATCGCGCT+AGG + chr1.4:2674685-2674704 MS.gene062730:CDS 50.0%
TGGTTGGCAACAGTTGGGTA+TGG + chr1.4:2672480-2672499 MS.gene062730:intron 50.0%
! AGCCTTCAACCAGTCTTGTC+TGG + chr1.4:2675072-2675091 MS.gene062730:CDS 50.0%
! AGGGCATTTGGCAAACCCTT+TGG + chr1.4:2674362-2674381 MS.gene062730:CDS 50.0%
! GGTGGTGATAACAGGGCATT+TGG + chr1.4:2674350-2674369 MS.gene062730:CDS 50.0%
! GTGATGGCAGCTTGGAGTTT+TGG + chr1.4:2674313-2674332 MS.gene062730:intron 50.0%
! GTGCTTGGAGTGGATTCTCA+TGG + chr1.4:2674145-2674164 MS.gene062730:CDS 50.0%
! GTTGGGTATGGGAAGTGCAT+TGG + chr1.4:2672492-2672511 MS.gene062730:intron 50.0%
! TTAGGTGTTGCCATTGGAGC+TGG + chr1.4:2675191-2675210 MS.gene062730:intron 50.0%
!! TGTGGACAAGCATTTGGTGC+TGG + chr1.4:2672523-2672542 MS.gene062730:CDS 50.0%
ACCTTCCTATGCCCCTTGCT+AGG + chr1.4:2673418-2673437 MS.gene062730:intron 55.0%
CAGAAAGCCGTGTGAGGAAG+TGG + chr1.4:2676029-2676048 MS.gene062730:CDS 55.0%
GAAAGCCGTGTGAGGAAGTG+GGG + chr1.4:2676031-2676050 MS.gene062730:CDS 55.0%
GATGAGATCGCAGAAGCTGC+TGG + chr1.4:2672667-2672686 MS.gene062730:CDS 55.0%
GGGTGGAGTCGAAGAAGCTA+TGG + chr1.4:2672048-2672067 MS.gene062730:CDS 55.0%
GTGTTGCCATTGGAGCTGGT+TGG + chr1.4:2675195-2675214 MS.gene062730:CDS 55.0%
TTCCTCCCCACTTCCTCACA+CGG - chr1.4:2676039-2676058 None:intergenic 55.0%
! GTGTTGCTATATGGGGGCTC+TGG - chr1.4:2673400-2673419 None:intergenic 55.0%
! TCCTAGCAAGGGGCATAGGA+AGG - chr1.4:2673422-2673441 None:intergenic 55.0%
!! GGCAAACCCTTTGGTGCCAT+TGG + chr1.4:2674371-2674390 MS.gene062730:CDS 55.0%
AGCCGTGTGAGGAAGTGGGG+AGG + chr1.4:2676034-2676053 MS.gene062730:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 2671945 2676078 2671945 ID=MS.gene062730
chr1.4 mRNA 2671945 2676078 2671945 ID=MS.gene062730.t1;Parent=MS.gene062730
chr1.4 exon 2671945 2672220 2671945 ID=MS.gene062730.t1.exon1;Parent=MS.gene062730.t1
chr1.4 CDS 2671945 2672220 2671945 ID=cds.MS.gene062730.t1;Parent=MS.gene062730.t1
chr1.4 exon 2672493 2672688 2672493 ID=MS.gene062730.t1.exon2;Parent=MS.gene062730.t1
chr1.4 CDS 2672493 2672688 2672493 ID=cds.MS.gene062730.t1;Parent=MS.gene062730.t1
chr1.4 exon 2673884 2674229 2673884 ID=MS.gene062730.t1.exon3;Parent=MS.gene062730.t1
chr1.4 CDS 2673884 2674229 2673884 ID=cds.MS.gene062730.t1;Parent=MS.gene062730.t1
chr1.4 exon 2674323 2674409 2674323 ID=MS.gene062730.t1.exon4;Parent=MS.gene062730.t1
chr1.4 CDS 2674323 2674409 2674323 ID=cds.MS.gene062730.t1;Parent=MS.gene062730.t1
chr1.4 exon 2674669 2674725 2674669 ID=MS.gene062730.t1.exon5;Parent=MS.gene062730.t1
chr1.4 CDS 2674669 2674725 2674669 ID=cds.MS.gene062730.t1;Parent=MS.gene062730.t1
chr1.4 exon 2674855 2675093 2674855 ID=MS.gene062730.t1.exon6;Parent=MS.gene062730.t1
chr1.4 CDS 2674855 2675093 2674855 ID=cds.MS.gene062730.t1;Parent=MS.gene062730.t1
chr1.4 exon 2675195 2675313 2675195 ID=MS.gene062730.t1.exon7;Parent=MS.gene062730.t1
chr1.4 CDS 2675195 2675313 2675195 ID=cds.MS.gene062730.t1;Parent=MS.gene062730.t1
chr1.4 exon 2675534 2675620 2675534 ID=MS.gene062730.t1.exon8;Parent=MS.gene062730.t1
chr1.4 CDS 2675534 2675620 2675534 ID=cds.MS.gene062730.t1;Parent=MS.gene062730.t1
chr1.4 exon 2676019 2676078 2676019 ID=MS.gene062730.t1.exon9;Parent=MS.gene062730.t1
chr1.4 CDS 2676019 2676078 2676019 ID=cds.MS.gene062730.t1;Parent=MS.gene062730.t1
Gene Sequence

>MS.gene062730

ATGGCAATCGACGACAGTCCTCTACTAGATAACAGTGTCAACTCTCCTCCTAGTGTTGTTCATCATGAGGAAGAGAAGCCACTGAAAATTGTTCACAAAATTGGGGTGGAGTCGAAGAAGCTATGGAAAATAGCTGGTCCAACAATCATAACTGCATTATCTCAGTACTCGCTTGGTGCATTCACTTCTACGTTTGTTGGCCATGTTAACGAGCTTGATCTTGCAGCTTTTTCTGTTGAAAATTCTGTTATTGCTGGTTTCGCCTTTGGTTTCTTGGTATGCAAACACTTTTCATCTCCATTTTATCCGTACATTACACTTGTTTTTTTTAACGACAAAATTCACGTGCATTAAAAATGTTGAATTGTGTGGAATTGTGTGTAAGAACACACGTTAGTATATCAAATGTCGCGGCAGTCTTTTATTATTTATGTTGTACTTACACAACACATTACACTTATGTTTAACTAGTACATTTGTTTTCATCAAAAAATTGTATCCTAAATTTTATGATTTATAAACTTGTTTTTATTTTTGGTTGGCAACAGTTGGGTATGGGAAGTGCATTGGAGACACTATGTGGACAAGCATTTGGTGCTGGACATATAAGGATGATGGGAATTTACATGCAAAGATCATGGATTATCTTGGTGGCTACTGGCCTTTTATTGTTACCTTTCTATATTTGGGCAACTCCCCTCTTGAAGCTTGTTGGACAGACTGATGAGATCGCAGAAGCTGCTGGTTAGTTACTTCTTATTTATATAAGTTATATTCCTATCATTTAAATTTTGGACTAGGACTTTAAAAAAAATAGATTTTAAGTTAAAAGAATCTATTGATTTTTTTTAGAGATTAAAAAAAAAAAAATTATTTCTGTTTGTTTACTAACATAAAAATCATTTTTTTTAAGATTTAAAACTCTTACACTAGAGTTCCTTGTATTTAGAAAAAAAAATGGATTCTCGAAAAACTACTTGGAATAGCTTCTCATTTTGAGGTTAAAAATGATTTTTTTTAACAAAATAAATTTTTTAAAAAATCTGAAACAAACACTACTAAAATAAAATGATTTTTAAGTTAAAAAAATAGATTTTTTTTTTCAAAAAAAAACCCAAACAAACGGGGCCTAGAATTGACTGCAGCGAATCCATTTTGGTAAATTTTTCTCTTGTAAATACACTACTTCCACTTGTTACTGTTACTTTGAAGGGCTTGAATCGACCATTCTATCATCATTATACCGAGTAATTTCATTAAGTAGTTGTACGTCTTACATTGTGACTTTAGTATATAAAAAACTCAATGTCGATCGTTCAATCTAAATTAACGGTCTAGATTATGGCTATATGGAATCAAGTTCCATCTTTTCACTGGTTAAAAGGGTAGCACTTTTATTGAAGTTTACATGTTAAAAACTTCGGTTCATAAAAATTTGCAGCGTAACTGGTACCAGAGCCCCCATATAGCAACACCTTCCTATGCCCCTTGCTAGGAAATTTTAAATGCTGATTAAAGTATAAGTACAAGATATTATCATATTAATAATGTAGCACTATAAATGCACTTGCTTGTACGAGTAAAGCTATGATAATGACTTGGGGAACTTTTTTTTTTTGAGGGATGACTTGGGGAACTTGTTAAGTAGATGTGATATAATTTGTTACGACTTTATCTAACATATACAAGCAAAATGATCTAACATTATATTTATACATATGTGTCTTTTTTACTATTCGATCTATAAATTACATCAAATCTCATTAAATTGTAATATTTATTTGATCCAATTGTGGAAATTAAATTGTGCATGATACAAAACTTGTTTTATTTGTGCACCATAAAATTGATCAGGTCATTACACGATAATGGCTTGTGTGTTTGTTTGGTTGTTAGTGTCTTTTTTATATATTTATTTTATCAATTTTTCTTTTTGTAGGCACATTTGCTTTGTGGATGATACCACAAATATTTGCATATGCTTTGAACTTTCCAATCCAAAAGTTCTTACAAGCACAAAGGAAAGTCCTGGTGATGTTATGGATATCAATAGGTGTTTTAGTGTTACATGTACCTCTTAGTTGGCTTCTAATATTGAAACTTAATTGGGGCTTAGTTGGAGCTGCAATTACTCTCAACACATCATGGTGGTTGATTGTCATTGGTCAACTTTTGTACATTTTCATCACCAAATCAGATGGTGCTTGGAGTGGATTCTCATGGCTAGCATTTGCAGATTTGTTTAATTTTTTGAAACTTTCTTTAGCTTCAGCTGTTATGTTATGGTATATTTTCTCAAACTTTATATTTTCAATTCAACTTAATTAATATTTGATGGAAACTTTATATTGAATTGAATTTTGAAAATGTGATGGCAGCTTGGAGTTTTGGTACTTGATGATATTGGTGGTGATAACAGGGCATTTGGCAAACCCTTTGGTGCCATTGGATGCTGTATCTATTTGGTAAAAGTTCTTTACCATCCCTTTCTCCAAATTCTCATTGTGCTATAGAAGTTATGGTTTTCCAAATAAAAGTGATAGACATTTTCTATTTTGTTCCTAGCACTTTTGCATTGTTGTGTGATTGCAATTCAAAACTGAGCATTAATTAGGTTTGGGTTAGTCATTGTAAGCATATCATCCAAGTGCAGTATGTAAGGAGAACATGACAACAAAAGTTAAGATCAAGAATTGACATTGATGTGTGTTTCCATGATTGCAGTATGAACATAAACGGTTGGGATATGATGATCGCGCTAGGGTTTAACGTTGCAATAAGGTGATTATCACTTTCTCTATTTCTTTTCTTGACAGATTTAGCTTCTTTAAAGTGAACAATTTATTTTCTTTTCTTAAGTGAATAGTTAGTCGCAGATTTTTATACTGATTATGTTTAATTTATGAACAGTGTGAGAGTATCAAATGAACTTGGAGCAGGTGATTTTGGAGCTGCAAAGTTCGCAGTGATAGTAGTTTCCCTCACATCAATATCCATTGGTGTTGTTGCCATGATCATAGTACTAACAACTAGAGATTACTTTCCTCAATTGTTCACTTCAAGCTATGAGGTTGCAAAGGAAACAACTAAACTTGCTGCTTTGCTTAGTATCACAGTACTTCTAAACAGCCTTCAACCAGTCTTGTCTGGTTAGTCACAAAAAGATTGAAACATTGTTACTATAAATGTTTTTATGCATTGAAACATTGTTACTATAAATTAATTTATGCATTTGTTGTTACTGTTTTAGGTGTTGCCATTGGAGCTGGTTGGCAATCTCTTGTAGCTTACATCAATCTTGGATCCTACTATGTTGTTGGATTACCAGCAGGGATATTGTTGGGCTTCACATTTGGTTTTGGAGCAGAGGTGATTTATTATTACCCCATATTTCTCTTGAATTTAATACTAAAACACTTTGAATATAGTATAAATATTAGAAGGATGCATTTAGTGATTTAATATTTTTTGTTTGTTAATGAGGACTATTTTGTAATTTTTTATTGTTACTGATTTAACATAAATTTATTAATGATTTAACATAAATTTATTTGTTCTTACTTTTTTTATACCTATGATTTGTTATCAGGGTATTTGGTCAGGTCTGATTGGAGGCATAGTTGTGCAGACCATAATCCTTATAATTGTTACTTCATTAACCAATTGGAAAAAAGAGGTTAGTGCAATTATTTTTTTATTAACGAATGTTAGTAGTTAATTTGTTAGAAGAGTGAATTTGCAAGCAATAAGGTTCGAACCATGAATCTTCTTTTTGACGCTAGACTAATGTTTATTTAGTATTTTATTTTTTTAATTGATTTCTAAAAGGACATTAAGAAGATTCCACAACTAAACTTAGGGGTCCTTCAAGGGATGAGAAAATGGAAATATGAATGAGATGTTCTATCATAGTGAGTTAGGATCATTAGGAAGTTGGACATGACATTTTCCTTTTGTTCTTCAAATAAATAACTTTTTTTTTGGTACAAAAGAGGGCCAAAGCCCAATTCTACAAATAAATAACTTATTGTTAGTTAAAAATTAATTTCATATCTTTATCTTTGGATTTCACAGGCTGATGAAGCAGAAAGCCGTGTGAGGAAGTGGGGAGGAACATTTTCAATTGAGAATTAA
Protein sequence

>MS.gene062730.t1

MAIDDSPLLDNSVNSPPSVVHHEEEKPLKIVHKIGVESKKLWKIAGPTIITALSQYSLGAFTSTFVGHVNELDLAAFSVENSVIAGFAFGFLLGMGSALETLCGQAFGAGHIRMMGIYMQRSWIILVATGLLLLPFYIWATPLLKLVGQTDEIAEAAGTFALWMIPQIFAYALNFPIQKFLQAQRKVLVMLWISIGVLVLHVPLSWLLILKLNWGLVGAAITLNTSWWLIVIGQLLYIFITKSDGAWSGFSWLAFADLFNFLKLSLASAVMLCLEFWYLMILVVITGHLANPLVPLDAVSICMNINGWDMMIALGFNVAISVRVSNELGAGDFGAAKFAVIVVSLTSISIGVVAMIIVLTTRDYFPQLFTSSYEVAKETTKLAALLSITVLLNSLQPVLSGVAIGAGWQSLVAYINLGSYYVVGLPAGILLGFTFGFGAEGIWSGLIGGIVVQTIILIIVTSLTNWKKEADEAESRVRKWGGTFSIEN