Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04976.t1 | AUW37509.1 | 98.1 | 212 | 4 | 0 | 1 | 212 | 1 | 212 | 6.60E-115 | 423.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04976.t1 | Q96324 | 58.0 | 212 | 89 | 0 | 1 | 212 | 1 | 212 | 1.7e-71 | 270.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04976.t1 | A0A2Z2Z7E2 | 98.1 | 212 | 4 | 0 | 1 | 212 | 1 | 212 | 4.7e-115 | 423.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049699 | MS.gene04976 | 0.818757 | 1.66E-52 | -1.69E-46 |
| MS.gene04976 | MS.gene05016 | 0.914732 | 1.36E-84 | -1.69E-46 |
| MS.gene04976 | MS.gene050807 | 0.801822 | 7.51E-49 | -1.69E-46 |
| MS.gene04976 | MS.gene05604 | 0.817474 | 3.24E-52 | -1.69E-46 |
| MS.gene04976 | MS.gene061566 | 0.87542 | 3.13E-68 | -1.69E-46 |
| MS.gene04976 | MS.gene061919 | 0.820558 | 6.44E-53 | -1.69E-46 |
| MS.gene04976 | MS.gene062729 | 0.863891 | 1.80E-64 | -1.69E-46 |
| MS.gene04976 | MS.gene062730 | 0.839808 | 1.27E-57 | -1.69E-46 |
| MS.gene04976 | MS.gene064944 | 0.801746 | 7.79E-49 | -1.69E-46 |
| MS.gene04976 | MS.gene065568 | 0.800061 | 1.72E-48 | -1.69E-46 |
| MS.gene04976 | MS.gene068038 | 0.801544 | 8.57E-49 | -1.69E-46 |
| MS.gene04976 | MS.gene09827 | 0.802005 | 6.89E-49 | -1.69E-46 |
| MS.gene04976 | MS.gene20359 | 0.829809 | 4.18E-55 | -1.69E-46 |
| MS.gene04976 | MS.gene22587 | 0.853107 | 2.97E-61 | -1.69E-46 |
| MS.gene04976 | MS.gene24328 | 0.859742 | 3.35E-63 | -1.69E-46 |
| MS.gene04976 | MS.gene26918 | 0.841098 | 5.84E-58 | -1.69E-46 |
| MS.gene04976 | MS.gene27356 | 0.849001 | 4.28E-60 | -1.69E-46 |
| MS.gene04976 | MS.gene29361 | 0.800244 | 1.58E-48 | -1.69E-46 |
| MS.gene04976 | MS.gene31802 | 0.810649 | 1.04E-50 | -1.69E-46 |
| MS.gene04976 | MS.gene32361 | 0.802806 | 4.71E-49 | -1.69E-46 |
| MS.gene04976 | MS.gene36567 | 0.804486 | 2.11E-49 | -1.69E-46 |
| MS.gene04976 | MS.gene43821 | 0.801584 | 8.40E-49 | -1.69E-46 |
| MS.gene04976 | MS.gene54838 | 0.820998 | 5.10E-53 | -1.69E-46 |
| MS.gene04976 | MS.gene58547 | 0.802003 | 6.89E-49 | -1.69E-46 |
| MS.gene04976 | MS.gene74134 | 0.802429 | 5.63E-49 | -1.69E-46 |
| MS.gene04976 | MS.gene89888 | 0.80027 | 1.56E-48 | -1.69E-46 |
| MS.gene04976 | MS.gene90649 | 0.800121 | 1.67E-48 | -1.69E-46 |
| MS.gene04976 | MS.gene97784 | 0.801607 | 8.31E-49 | -1.69E-46 |
| MS.gene04976 | MS.gene99848 | 0.839015 | 2.04E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene04976 | MS.gene061566 | PPI |
| MS.gene04976 | MS.gene049699 | PPI |
| MS.gene04976 | MS.gene22188 | PPI |
| MS.gene04976 | MS.gene008278 | PPI |
| MS.gene04976 | MS.gene20711 | PPI |
| MS.gene008337 | MS.gene04976 | PPI |
| MS.gene04976 | MS.gene005621 | PPI |
| MS.gene04976 | MS.gene22196 | PPI |
| MS.gene008278 | MS.gene04976 | PPI |
| MS.gene04976 | MS.gene48030 | PPI |
| MS.gene04976 | MS.gene019183 | PPI |
| MS.gene04976 | MS.gene049706 | PPI |
| MS.gene04976 | MS.gene05016 | PPI |
| MS.gene04976 | MS.gene03034 | PPI |
| MS.gene04976 | MS.gene008334 | PPI |
| MS.gene04976 | MS.gene048703 | PPI |
| MS.gene04976 | MS.gene83384 | PPI |
| MS.gene04976 | MS.gene47714 | PPI |
| MS.gene04976 | MS.gene048743 | PPI |
| MS.gene04976 | MS.gene69499 | PPI |
| MS.gene04976 | MS.gene48032 | PPI |
| MS.gene000510 | MS.gene04976 | PPI |
| MS.gene04976 | MS.gene038277 | PPI |
| MS.gene04976 | MS.gene017062 | PPI |
| MS.gene04976 | MS.gene008337 | PPI |
| MS.gene04976 | MS.gene07192 | PPI |
| MS.gene04976 | MS.gene22195 | PPI |
| MS.gene04976 | MS.gene69505 | PPI |
| MS.gene04976 | MS.gene017060 | PPI |
| MS.gene04976 | MS.gene019181 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04976.t1 | MTR_3g064700 | 97.642 | 212 | 5 | 0 | 1 | 212 | 1 | 212 | 2.08e-153 | 424 |
| MS.gene04976.t1 | MTR_3g450930 | 56.872 | 211 | 90 | 1 | 1 | 211 | 1 | 210 | 9.01e-89 | 260 |
| MS.gene04976.t1 | MTR_3g450790 | 58.294 | 211 | 87 | 1 | 1 | 211 | 1 | 210 | 1.43e-87 | 257 |
| MS.gene04976.t1 | MTR_5g090920 | 55.399 | 213 | 89 | 4 | 1 | 210 | 1 | 210 | 1.40e-79 | 237 |
| MS.gene04976.t1 | MTR_5g090910 | 52.113 | 213 | 98 | 3 | 1 | 211 | 1 | 211 | 4.71e-75 | 226 |
| MS.gene04976.t1 | MTR_1g026140 | 45.794 | 214 | 111 | 2 | 3 | 211 | 5 | 218 | 2.29e-62 | 194 |
| MS.gene04976.t1 | MTR_1g088840 | 43.961 | 207 | 115 | 1 | 2 | 208 | 3 | 208 | 9.97e-60 | 186 |
| MS.gene04976.t1 | MTR_1g088825 | 43.961 | 207 | 115 | 1 | 2 | 208 | 3 | 208 | 9.97e-60 | 186 |
| MS.gene04976.t1 | MTR_1g088845 | 44.928 | 207 | 113 | 1 | 2 | 208 | 3 | 208 | 1.57e-58 | 183 |
| MS.gene04976.t1 | MTR_1g088850 | 43.062 | 209 | 117 | 2 | 1 | 208 | 1 | 208 | 1.45e-57 | 181 |
| MS.gene04976.t1 | MTR_1g088840 | 44.444 | 162 | 89 | 1 | 47 | 208 | 1 | 161 | 3.65e-46 | 150 |
| MS.gene04976.t1 | MTR_5g090910 | 50.676 | 148 | 70 | 2 | 66 | 211 | 8 | 154 | 5.61e-46 | 150 |
| MS.gene04976.t1 | MTR_1g088840 | 42.727 | 110 | 62 | 1 | 99 | 208 | 4 | 112 | 7.28e-25 | 94.7 |
| MS.gene04976.t1 | MTR_8g098420 | 27.957 | 186 | 131 | 1 | 1 | 183 | 1 | 186 | 2.06e-14 | 68.9 |
| MS.gene04976.t1 | MTR_8g098420 | 28.070 | 171 | 120 | 1 | 1 | 168 | 1 | 171 | 3.98e-14 | 69.3 |
| MS.gene04976.t1 | MTR_2g005570 | 29.651 | 172 | 108 | 6 | 40 | 208 | 42 | 203 | 5.25e-13 | 67.4 |
| MS.gene04976.t1 | MTR_4g134380 | 28.856 | 201 | 124 | 5 | 5 | 202 | 18 | 202 | 5.34e-13 | 65.9 |
| MS.gene04976.t1 | MTR_2g005570 | 29.651 | 172 | 108 | 6 | 40 | 208 | 42 | 203 | 5.72e-13 | 67.4 |
| MS.gene04976.t1 | MTR_1g492670 | 46.032 | 63 | 33 | 1 | 146 | 208 | 2 | 63 | 6.79e-13 | 62.0 |
| MS.gene04976.t1 | MTR_4g134370 | 35.849 | 106 | 67 | 1 | 5 | 110 | 18 | 122 | 6.88e-13 | 65.9 |
| MS.gene04976.t1 | MTR_4g134380 | 33.962 | 106 | 69 | 1 | 5 | 110 | 18 | 122 | 1.75e-12 | 63.5 |
| MS.gene04976.t1 | MTR_4g134770 | 33.333 | 132 | 74 | 4 | 40 | 167 | 40 | 161 | 6.76e-12 | 64.3 |
| MS.gene04976.t1 | MTR_4g134770 | 28.324 | 173 | 110 | 4 | 40 | 208 | 5 | 167 | 8.63e-12 | 63.9 |
| MS.gene04976.t1 | MTR_4g134360 | 32.787 | 122 | 77 | 3 | 4 | 125 | 15 | 131 | 1.28e-11 | 60.5 |
| MS.gene04976.t1 | MTR_8g098430 | 26.627 | 169 | 121 | 1 | 3 | 168 | 5 | 173 | 3.34e-11 | 61.2 |
| MS.gene04976.t1 | MTR_3g088635 | 21.397 | 229 | 141 | 5 | 15 | 208 | 13 | 237 | 4.93e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04976.t1 | AT3G03190 | 58.019 | 212 | 89 | 0 | 1 | 212 | 1 | 212 | 4.91e-92 | 268 |
| MS.gene04976.t1 | AT5G17220 | 53.774 | 212 | 98 | 0 | 1 | 212 | 1 | 212 | 3.11e-86 | 254 |
| MS.gene04976.t1 | AT2G30870 | 52.885 | 208 | 97 | 1 | 1 | 208 | 1 | 207 | 7.59e-78 | 233 |
| MS.gene04976.t1 | AT2G30860 | 51.691 | 207 | 99 | 1 | 1 | 207 | 1 | 206 | 1.68e-74 | 224 |
| MS.gene04976.t1 | AT3G62760 | 44.286 | 210 | 115 | 2 | 1 | 209 | 1 | 209 | 9.53e-59 | 184 |
| MS.gene04976.t1 | AT1G02930 | 43.689 | 206 | 114 | 2 | 3 | 208 | 4 | 207 | 5.95e-57 | 179 |
| MS.gene04976.t1 | AT1G02930 | 43.689 | 206 | 114 | 2 | 3 | 208 | 4 | 207 | 5.95e-57 | 179 |
| MS.gene04976.t1 | AT1G02920 | 44.175 | 206 | 114 | 1 | 3 | 208 | 4 | 208 | 1.42e-56 | 178 |
| MS.gene04976.t1 | AT2G47730 | 43.750 | 208 | 115 | 2 | 5 | 211 | 54 | 260 | 1.83e-54 | 175 |
| MS.gene04976.t1 | AT2G47730 | 43.750 | 208 | 115 | 2 | 5 | 211 | 54 | 260 | 1.83e-54 | 175 |
| MS.gene04976.t1 | AT4G02520 | 41.905 | 210 | 118 | 2 | 3 | 209 | 4 | 212 | 6.08e-54 | 172 |
| MS.gene04976.t1 | AT2G02930 | 42.105 | 209 | 117 | 2 | 3 | 208 | 4 | 211 | 1.22e-52 | 168 |
| MS.gene04976.t1 | AT1G49860 | 45.026 | 191 | 102 | 2 | 20 | 207 | 22 | 212 | 1.58e-51 | 167 |
| MS.gene04976.t1 | AT1G02950 | 43.137 | 204 | 114 | 2 | 4 | 206 | 26 | 228 | 5.15e-51 | 165 |
| MS.gene04976.t1 | AT1G02950 | 43.137 | 204 | 114 | 2 | 4 | 206 | 26 | 228 | 5.15e-51 | 165 |
| MS.gene04976.t1 | AT1G02950 | 43.137 | 204 | 114 | 2 | 4 | 206 | 28 | 230 | 5.51e-51 | 165 |
| MS.gene04976.t1 | AT1G02950 | 43.137 | 204 | 114 | 2 | 4 | 206 | 38 | 240 | 5.84e-51 | 166 |
| MS.gene04976.t1 | AT2G30860 | 50.968 | 155 | 75 | 1 | 1 | 155 | 1 | 154 | 9.52e-51 | 162 |
| MS.gene04976.t1 | AT1G02940 | 39.512 | 205 | 122 | 2 | 4 | 207 | 40 | 243 | 2.95e-49 | 161 |
| MS.gene04976.t1 | AT1G02940 | 39.512 | 205 | 122 | 2 | 4 | 207 | 40 | 243 | 2.95e-49 | 161 |
| MS.gene04976.t1 | AT1G02940 | 39.512 | 205 | 122 | 2 | 4 | 207 | 65 | 268 | 3.56e-49 | 162 |
| MS.gene04976.t1 | AT1G02940 | 39.512 | 205 | 122 | 2 | 4 | 207 | 53 | 256 | 3.63e-49 | 161 |
| MS.gene04976.t1 | AT1G02950 | 40.972 | 144 | 83 | 2 | 64 | 206 | 60 | 202 | 8.62e-30 | 110 |
| MS.gene04976.t1 | AT5G41240 | 30.000 | 210 | 138 | 4 | 1 | 204 | 1 | 207 | 4.10e-16 | 76.6 |
| MS.gene04976.t1 | AT5G41220 | 28.571 | 203 | 138 | 3 | 1 | 197 | 1 | 202 | 1.55e-14 | 72.0 |
| MS.gene04976.t1 | AT1G77290 | 24.051 | 237 | 148 | 6 | 3 | 208 | 1 | 236 | 2.01e-14 | 70.5 |
| MS.gene04976.t1 | AT1G77290 | 24.051 | 237 | 148 | 6 | 3 | 208 | 1 | 236 | 2.01e-14 | 70.5 |
| MS.gene04976.t1 | AT1G77290 | 24.051 | 237 | 148 | 6 | 3 | 208 | 1 | 236 | 2.01e-14 | 70.5 |
| MS.gene04976.t1 | AT1G09640 | 28.796 | 191 | 123 | 4 | 27 | 211 | 22 | 205 | 7.09e-14 | 68.9 |
| MS.gene04976.t1 | AT5G41210 | 28.079 | 203 | 139 | 3 | 1 | 197 | 2 | 203 | 9.32e-14 | 68.2 |
| MS.gene04976.t1 | AT1G57720 | 27.907 | 172 | 112 | 4 | 40 | 208 | 40 | 202 | 6.47e-13 | 67.0 |
| MS.gene04976.t1 | AT1G57720 | 27.907 | 172 | 112 | 4 | 40 | 208 | 40 | 202 | 6.47e-13 | 67.0 |
| MS.gene04976.t1 | AT1G09640 | 28.191 | 188 | 122 | 4 | 27 | 208 | 22 | 202 | 1.73e-12 | 65.9 |
| MS.gene04976.t1 | AT2G02390 | 31.776 | 107 | 71 | 1 | 3 | 109 | 9 | 113 | 6.74e-11 | 59.7 |
Find 47 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTATTGAGGCAGCAAAAT+TGG | 0.165753 | 3.3:+58951526 | MS.gene04976:CDS |
| AATATGGTGGTGAAAGTTTA+TGG | 0.187933 | 3.3:+58949353 | None:intergenic |
| GATGGTGATTTCAGACTCTT+TGG | 0.307785 | 3.3:+58950431 | MS.gene04976:CDS |
| GTGCATATTGATCTTGATAA+AGG | 0.322979 | 3.3:+58949446 | MS.gene04976:CDS |
| GCTGATCTTAGCCATCTTCC+TGG | 0.323812 | 3.3:+58951494 | MS.gene04976:CDS |
| TCTAAAAGCACTTATCTTGC+TGG | 0.332817 | 3.3:+58951455 | MS.gene04976:CDS |
| AACATTATATTGAAGCATAA+AGG | 0.362361 | 3.3:-58951326 | None:intergenic |
| TTGGAAGAAGTTGAAGGAAT+TGG | 0.377135 | 3.3:+58951613 | MS.gene04976:CDS |
| TTGTGATTTGTGTAGAATCC+AGG | 0.385120 | 3.3:+58951183 | MS.gene04976:intron |
| AAATCACCATCCTCTACAAC+TGG | 0.411376 | 3.3:-58950419 | None:intergenic |
| TCAATAAGATGTTCAATTCC+AGG | 0.412097 | 3.3:-58951512 | None:intergenic |
| CTTATTGAGGCAGCAAAATT+GGG | 0.415280 | 3.3:+58951527 | MS.gene04976:CDS |
| GAGGGTGATGGCTTGCCTCT+TGG | 0.421689 | 3.3:+58949400 | MS.gene04976:CDS |
| TCCTTCAACTTCTTCCAAGC+TGG | 0.444171 | 3.3:-58951608 | None:intergenic |
| AAAGTTGTGCCAAGTAAGTC+AGG | 0.462656 | 3.3:-58951248 | None:intergenic |
| ACCTGAGTTCCTTCTCCTCC+AGG | 0.473534 | 3.3:+58949481 | MS.gene04976:CDS |
| AAATTTCTAGTAGGCCAGCT+TGG | 0.510403 | 3.3:+58951594 | MS.gene04976:CDS |
| TGCTGGTGATAAGTTCACTT+TGG | 0.510705 | 3.3:+58951472 | MS.gene04976:CDS |
| GGTGGGAGAAAATTTCTAGT+AGG | 0.512715 | 3.3:+58951585 | MS.gene04976:CDS |
| TAGAATCCAGGGCTATTGTA+AGG | 0.513820 | 3.3:+58951195 | MS.gene04976:intron |
| AAGTTGAAGGAATTGGCATA+AGG | 0.515297 | 3.3:+58951620 | MS.gene04976:CDS |
| GATGTTCAATTCCAGGAAGA+TGG | 0.515702 | 3.3:-58951505 | None:intergenic |
| TGGAATTGAACATCTTATTG+AGG | 0.518417 | 3.3:+58951514 | MS.gene04976:CDS |
| GACCGTGGTCCTGACTTACT+TGG | 0.519069 | 3.3:+58951239 | MS.gene04976:CDS |
| AGAAAGCTGTGGTAAATCAA+TGG | 0.531665 | 3.3:+58951276 | MS.gene04976:CDS |
| ACAACTGGAACTTGACCAAA+GGG | 0.534533 | 3.3:-58950404 | None:intergenic |
| TGTGATTTGTGTAGAATCCA+GGG | 0.535247 | 3.3:+58951184 | MS.gene04976:intron |
| TGGTCAAGTTCCAGTTGTAG+AGG | 0.543144 | 3.3:+58950409 | MS.gene04976:CDS |
| TATATACTACCTGGAGGAGA+AGG | 0.549721 | 3.3:-58949490 | None:intergenic |
| TGAGCTATAGTTATGTCTCC+AGG | 0.558174 | 3.3:-58951380 | None:intergenic |
| CAAGTTCCAGTTGTAGAGGA+TGG | 0.575857 | 3.3:+58950413 | MS.gene04976:CDS |
| GCCAGCTTGGAAGAAGTTGA+AGG | 0.576600 | 3.3:+58951607 | MS.gene04976:CDS |
| AGAGGAAGAATGTGAATGCT+TGG | 0.577760 | 3.3:+58951564 | MS.gene04976:CDS |
| GAAGAATGTGAATGCTTGGT+GGG | 0.598085 | 3.3:+58951568 | MS.gene04976:CDS |
| GGAAGAATGTGAATGCTTGG+TGG | 0.600496 | 3.3:+58951567 | MS.gene04976:CDS |
| TACAACTGGAACTTGACCAA+AGG | 0.607365 | 3.3:-58950405 | None:intergenic |
| TGGGACATTTGATTAGTGAG+AGG | 0.608261 | 3.3:+58951546 | MS.gene04976:CDS |
| ACAGTACCTTACAATAGCCC+TGG | 0.622093 | 3.3:-58951201 | None:intergenic |
| TAATGCAGCATGTCCTCAGA+GGG | 0.631190 | 3.3:+58949382 | MS.gene04976:CDS |
| ACCTGGAGGAGAAGGAACTC+AGG | 0.631815 | 3.3:-58949482 | None:intergenic |
| AGCATGTCCTCAGAGGGTGA+TGG | 0.631871 | 3.3:+58949388 | MS.gene04976:CDS |
| AGGCAAGCCATCACCCTCTG+AGG | 0.647043 | 3.3:-58949395 | None:intergenic |
| TTAATGCAGCATGTCCTCAG+AGG | 0.685889 | 3.3:+58949381 | MS.gene04976:CDS |
| AACTTTAGAAGAGAAAGCTG+TGG | 0.694994 | 3.3:+58951265 | MS.gene04976:CDS |
| GCAGCAAAGTATGCAGACCG+TGG | 0.737322 | 3.3:+58951224 | MS.gene04976:CDS |
| TGCCAAGTAAGTCAGGACCA+CGG | 0.737821 | 3.3:-58951241 | None:intergenic |
| TGCTTGATGTGTATGAACGT+AGG | 0.749850 | 3.3:+58951429 | MS.gene04976:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCATATATATAATTGTATA+TGG | - | chr3.3:58950182-58950201 | None:intergenic | 10.0% |
| !!! | AGCAAATTTATTATTTTTTA+GGG | - | chr3.3:58950544-58950563 | None:intergenic | 10.0% |
| !!! | TAGCAAATTTATTATTTTTT+AGG | - | chr3.3:58950545-58950564 | None:intergenic | 10.0% |
| !! | AAAAATATTATCGAAGAAAA+AGG | - | chr3.3:58949559-58949578 | None:intergenic | 15.0% |
| !! | AGTGTTAATTAATTAAAAGT+GGG | + | chr3.3:58949942-58949961 | MS.gene04976:intron | 15.0% |
| !! | TTGAAGGTAAAAAATAATTA+AGG | - | chr3.3:58950594-58950613 | None:intergenic | 15.0% |
| !!! | AAATTTAAATAGTATCGATT+AGG | - | chr3.3:58950708-58950727 | None:intergenic | 15.0% |
| !!! | AGATTTATTATATTGATTGA+TGG | + | chr3.3:58949985-58950004 | MS.gene04976:intron | 15.0% |
| !!! | CTTTTTTTTCTTCTTAAAAA+AGG | + | chr3.3:58949856-58949875 | MS.gene04976:intron | 15.0% |
| !!! | TCTTTTTTTATAAAAGTATG+CGG | + | chr3.3:58949883-58949902 | MS.gene04976:intron | 15.0% |
| !! | AAAATATAGTTGAGATATCT+TGG | + | chr3.3:58949808-58949827 | MS.gene04976:intron | 20.0% |
| !! | AACATTATATTGAAGCATAA+AGG | - | chr3.3:58951329-58951348 | None:intergenic | 20.0% |
| !! | ACATTGCTCATATTTAAATA+AGG | + | chr3.3:58951070-58951089 | MS.gene04976:intron | 20.0% |
| !! | ATAAAGTAACATGTTATGTT+AGG | + | chr3.3:58951152-58951171 | MS.gene04976:intron | 20.0% |
| !! | GAGTGTTAATTAATTAAAAG+TGG | + | chr3.3:58949941-58949960 | MS.gene04976:intron | 20.0% |
| !!! | AGTAACATGTTATTTTTTCT+AGG | + | chr3.3:58951124-58951143 | MS.gene04976:intron | 20.0% |
| !!! | GTAACATGTTATTTTTTCTA+GGG | + | chr3.3:58951125-58951144 | MS.gene04976:intron | 20.0% |
| !!! | TTTAATTTTCATGGTTTCAT+TGG | + | chr3.3:58950954-58950973 | MS.gene04976:intron | 20.0% |
| ! | ATGATATGATATTTGATCGT+AGG | - | chr3.3:58950922-58950941 | None:intergenic | 25.0% |
| ! | CTTGTAATTCTACCAAAAAT+GGG | + | chr3.3:58951353-58951372 | MS.gene04976:CDS | 25.0% |
| ! | GCACAAATATTTACTATGTT+CGG | - | chr3.3:58950109-58950128 | None:intergenic | 25.0% |
| ! | TAATTCATGTGTATCCATAT+TGG | + | chr3.3:58950988-58951007 | MS.gene04976:intron | 25.0% |
| ! | TATTGGTGGAATATAATTGA+AGG | - | chr3.3:58950610-58950629 | None:intergenic | 25.0% |
| ! | TCTTGTAATTCTACCAAAAA+TGG | + | chr3.3:58951352-58951371 | MS.gene04976:CDS | 25.0% |
| ! | TTTATAGACTATATACTACC+TGG | - | chr3.3:58949502-58949521 | None:intergenic | 25.0% |
| !! | TCTCTCTTTGTTTAAATATG+TGG | - | chr3.3:58950641-58950660 | None:intergenic | 25.0% |
| !!! | AATATGTGGTGTTGATTTAT+TGG | - | chr3.3:58950627-58950646 | None:intergenic | 25.0% |
| !!! | CGTTAGTAGTTTAATTTTCA+TGG | + | chr3.3:58950945-58950964 | MS.gene04976:intron | 25.0% |
| !!! | CTCAACTATATTTTTATGAG+CGG | - | chr3.3:58949802-58949821 | None:intergenic | 25.0% |
| !!! | TAAATAGTATCGATTAGGTA+CGG | - | chr3.3:58950703-58950722 | None:intergenic | 25.0% |
| AATAGACATTACGTCATGTT+AGG | + | chr3.3:58950814-58950833 | MS.gene04976:intron | 30.0% | |
| GTGCATATTGATCTTGATAA+AGG | + | chr3.3:58949446-58949465 | MS.gene04976:CDS | 30.0% | |
| TCAATAAGATGTTCAATTCC+AGG | - | chr3.3:58951515-58951534 | None:intergenic | 30.0% | |
| TGAAGAGAAATGAGTAATTG+TGG | + | chr3.3:58950069-58950088 | MS.gene04976:intron | 30.0% | |
| TGAGCACAAATTTAATTGAG+AGG | - | chr3.3:58950496-58950515 | None:intergenic | 30.0% | |
| TGGAATTGAACATCTTATTG+AGG | + | chr3.3:58951514-58951533 | MS.gene04976:CDS | 30.0% | |
| !! | AAATAGTATCGATTAGGTAC+GGG | - | chr3.3:58950702-58950721 | None:intergenic | 30.0% |
| !! | AGAAAGATACAAAAGCATCT+AGG | - | chr3.3:58949534-58949553 | None:intergenic | 30.0% |
| !! | GAAAGATACAAAAGCATCTA+GGG | - | chr3.3:58949533-58949552 | None:intergenic | 30.0% |
| !! | GTCATGTTAGGCTTTTAAAA+CGG | + | chr3.3:58950826-58950845 | MS.gene04976:intron | 30.0% |
| !! | GTTGAGATATCTTGGTTTTT+CGG | + | chr3.3:58949816-58949835 | MS.gene04976:intron | 30.0% |
| ACATTCTCATGAAATACGAG+TGG | - | chr3.3:58950341-58950360 | None:intergenic | 35.0% | |
| ACTCTTTGGTGAGAATTTGT+TGG | + | chr3.3:58950445-58950464 | MS.gene04976:intron | 35.0% | |
| AGAAAGCTGTGGTAAATCAA+TGG | + | chr3.3:58951276-58951295 | MS.gene04976:CDS | 35.0% | |
| ATAGACTATATACTACCTGG+AGG | - | chr3.3:58949499-58949518 | None:intergenic | 35.0% | |
| ATATTTGCGTGAGCTTTCTA+AGG | - | chr3.3:58950890-58950909 | None:intergenic | 35.0% | |
| CATTTCTCTTCACTTAGTGT+AGG | - | chr3.3:58950061-58950080 | None:intergenic | 35.0% | |
| CTTATTGAGGCAGCAAAATT+GGG | + | chr3.3:58951527-58951546 | MS.gene04976:CDS | 35.0% | |
| GTAAAAACTATGAGCTGCTA+TGG | - | chr3.3:58949684-58949703 | None:intergenic | 35.0% | |
| TCTTATTGAGGCAGCAAAAT+TGG | + | chr3.3:58951526-58951545 | MS.gene04976:CDS | 35.0% | |
| TGCGAAAAATAATTCCCGAA+AGG | + | chr3.3:58949637-58949656 | MS.gene04976:intron | 35.0% | |
| TTGGAAGAAGTTGAAGGAAT+TGG | + | chr3.3:58951613-58951632 | MS.gene04976:CDS | 35.0% | |
| ! | AACTTTAGAAGAGAAAGCTG+TGG | + | chr3.3:58951265-58951284 | MS.gene04976:CDS | 35.0% |
| ! | AATTGCGAGCGTTAGATTTT+TGG | - | chr3.3:58949735-58949754 | None:intergenic | 35.0% |
| ! | ATTCTACCTCTTTTTCCAAG+AGG | - | chr3.3:58949418-58949437 | None:intergenic | 35.0% |
| ! | ATTGCGAGCGTTAGATTTTT+GGG | - | chr3.3:58949734-58949753 | None:intergenic | 35.0% |
| ! | GTGTCGTTAATGATAAGCAA+CGG | + | chr3.3:58949582-58949601 | MS.gene04976:intron | 35.0% |
| ! | TGTGATTTGTGTAGAATCCA+GGG | + | chr3.3:58951184-58951203 | MS.gene04976:intron | 35.0% |
| ! | TTGTGATTTGTGTAGAATCC+AGG | + | chr3.3:58951183-58951202 | MS.gene04976:intron | 35.0% |
| !! | AGATATCTTGGTTTTTCGGA+TGG | + | chr3.3:58949820-58949839 | MS.gene04976:intron | 35.0% |
| !! | ATGTGGTGTTGATTTATTGG+TGG | - | chr3.3:58950624-58950643 | None:intergenic | 35.0% |
| !! | TCTAAAAGCACTTATCTTGC+TGG | + | chr3.3:58951455-58951474 | MS.gene04976:CDS | 35.0% |
| !!! | CGTTAGATTTTTGGGATTAG+CGG | - | chr3.3:58949726-58949745 | None:intergenic | 35.0% |
| !!! | TTTTTATTTTCGCAGCCCTT+TGG | + | chr3.3:58950389-58950408 | MS.gene04976:intron | 35.0% |
| AAAGTTGTGCCAAGTAAGTC+AGG | - | chr3.3:58951251-58951270 | None:intergenic | 40.0% | |
| AAATCACCATCCTCTACAAC+TGG | - | chr3.3:58950422-58950441 | None:intergenic | 40.0% | |
| AACAGATCAGCAAGCCAATA+TGG | - | chr3.3:58951005-58951024 | None:intergenic | 40.0% | |
| ACAACTGGAACTTGACCAAA+GGG | - | chr3.3:58950407-58950426 | None:intergenic | 40.0% | |
| AGAGGAAGAATGTGAATGCT+TGG | + | chr3.3:58951564-58951583 | MS.gene04976:CDS | 40.0% | |
| GAAGAATGTGAATGCTTGGT+GGG | + | chr3.3:58951568-58951587 | MS.gene04976:CDS | 40.0% | |
| GATGGTGATTTCAGACTCTT+TGG | + | chr3.3:58950431-58950450 | MS.gene04976:CDS | 40.0% | |
| GATGTTCAATTCCAGGAAGA+TGG | - | chr3.3:58951508-58951527 | None:intergenic | 40.0% | |
| TACAACTGGAACTTGACCAA+AGG | - | chr3.3:58950408-58950427 | None:intergenic | 40.0% | |
| TAGAATCCAGGGCTATTGTA+AGG | + | chr3.3:58951195-58951214 | MS.gene04976:intron | 40.0% | |
| TAGCGAAGGAAATTATTCCG+AGG | - | chr3.3:58949770-58949789 | None:intergenic | 40.0% | |
| TATATACTACCTGGAGGAGA+AGG | - | chr3.3:58949493-58949512 | None:intergenic | 40.0% | |
| TGAGCTATAGTTATGTCTCC+AGG | - | chr3.3:58951383-58951402 | None:intergenic | 40.0% | |
| TGCTGGTGATAAGTTCACTT+TGG | + | chr3.3:58951472-58951491 | MS.gene04976:CDS | 40.0% | |
| TGCTTGATGTGTATGAACGT+AGG | + | chr3.3:58951429-58951448 | MS.gene04976:CDS | 40.0% | |
| TGGGACATTTGATTAGTGAG+AGG | + | chr3.3:58951546-58951565 | MS.gene04976:CDS | 40.0% | |
| ! | CAATTTGTTCGCAATAGCCT+CGG | + | chr3.3:58949750-58949769 | MS.gene04976:intron | 40.0% |
| ! | TTTGGGATTAGCGGAATACA+AGG | - | chr3.3:58949717-58949736 | None:intergenic | 40.0% |
| !! | AAATTTCTAGTAGGCCAGCT+TGG | + | chr3.3:58951594-58951613 | MS.gene04976:CDS | 40.0% |
| !! | AACAAAGAGAGAGCACCAAT+TGG | + | chr3.3:58950649-58950668 | MS.gene04976:intron | 40.0% |
| !! | ACAAAGAGAGAGCACCAATT+GGG | + | chr3.3:58950650-58950669 | MS.gene04976:intron | 40.0% |
| !! | GGTGGGAGAAAATTTCTAGT+AGG | + | chr3.3:58951585-58951604 | MS.gene04976:CDS | 40.0% |
| ACAGTACCTTACAATAGCCC+TGG | - | chr3.3:58951204-58951223 | None:intergenic | 45.0% | |
| CAAGTTCCAGTTGTAGAGGA+TGG | + | chr3.3:58950413-58950432 | MS.gene04976:CDS | 45.0% | |
| CTACCAAAAATGGGTAAGCC+TGG | + | chr3.3:58951362-58951381 | MS.gene04976:CDS | 45.0% | |
| GGAAGAATGTGAATGCTTGG+TGG | + | chr3.3:58951567-58951586 | MS.gene04976:CDS | 45.0% | |
| TAATGCAGCATGTCCTCAGA+GGG | + | chr3.3:58949382-58949401 | MS.gene04976:CDS | 45.0% | |
| TACGTGTGTCGCAAACCTTT+CGG | - | chr3.3:58949655-58949674 | None:intergenic | 45.0% | |
| TAGCGGAATACAAGGATGGT+TGG | - | chr3.3:58949709-58949728 | None:intergenic | 45.0% | |
| TCCTTCAACTTCTTCCAAGC+TGG | - | chr3.3:58951611-58951630 | None:intergenic | 45.0% | |
| TGGTCAAGTTCCAGTTGTAG+AGG | + | chr3.3:58950409-58950428 | MS.gene04976:CDS | 45.0% | |
| TTAATGCAGCATGTCCTCAG+AGG | + | chr3.3:58949381-58949400 | MS.gene04976:CDS | 45.0% | |
| ! | GGATTAGCGGAATACAAGGA+TGG | - | chr3.3:58949713-58949732 | None:intergenic | 45.0% |
| ! | TCTCCAGGCTTACCCATTTT+TGG | - | chr3.3:58951368-58951387 | None:intergenic | 45.0% |
| !! | GTATCGATTAGGTACGGGTT+TGG | - | chr3.3:58950697-58950716 | None:intergenic | 45.0% |
| ACGTGTGTCGCAAACCTTTC+GGG | - | chr3.3:58949654-58949673 | None:intergenic | 50.0% | |
| GCCAGCTTGGAAGAAGTTGA+AGG | + | chr3.3:58951607-58951626 | MS.gene04976:CDS | 50.0% | |
| GCTGATCTTAGCCATCTTCC+TGG | + | chr3.3:58951494-58951513 | MS.gene04976:CDS | 50.0% | |
| GGCTTGCCTCTTGGAAAAAG+AGG | + | chr3.3:58949409-58949428 | MS.gene04976:CDS | 50.0% | |
| TGCCAAGTAAGTCAGGACCA+CGG | - | chr3.3:58951244-58951263 | None:intergenic | 50.0% | |
| ! | TACGGGTTTGGTATCCCATG+TGG | - | chr3.3:58950685-58950704 | None:intergenic | 50.0% |
| !! | AGCGGTGCTATTGATAGCGA+AGG | - | chr3.3:58949784-58949803 | None:intergenic | 50.0% |
| ACCTGAGTTCCTTCTCCTCC+AGG | + | chr3.3:58949481-58949500 | MS.gene04976:CDS | 55.0% | |
| ACCTGGAGGAGAAGGAACTC+AGG | - | chr3.3:58949485-58949504 | None:intergenic | 55.0% | |
| AGCATGTCCTCAGAGGGTGA+TGG | + | chr3.3:58949388-58949407 | MS.gene04976:CDS | 55.0% | |
| ATTGGGACGACATGGCCACA+TGG | + | chr3.3:58950667-58950686 | MS.gene04976:intron | 55.0% | |
| GACCGTGGTCCTGACTTACT+TGG | + | chr3.3:58951239-58951258 | MS.gene04976:CDS | 55.0% | |
| GAGCACCAATTGGGACGACA+TGG | + | chr3.3:58950659-58950678 | MS.gene04976:intron | 55.0% | |
| GCAGCAAAGTATGCAGACCG+TGG | + | chr3.3:58951224-58951243 | MS.gene04976:CDS | 55.0% | |
| TGTGGCCATGTCGTCCCAAT+TGG | - | chr3.3:58950667-58950686 | None:intergenic | 55.0% | |
| TTGGGACGACATGGCCACAT+GGG | + | chr3.3:58950668-58950687 | MS.gene04976:intron | 55.0% | |
| AGGCAAGCCATCACCCTCTG+AGG | - | chr3.3:58949398-58949417 | None:intergenic | 60.0% | |
| ! | GAGGGTGATGGCTTGCCTCT+TGG | + | chr3.3:58949400-58949419 | MS.gene04976:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 58949356 | 58951640 | 58949356 | ID=MS.gene04976 |
| chr3.3 | mRNA | 58949356 | 58951640 | 58949356 | ID=MS.gene04976.t1;Parent=MS.gene04976 |
| chr3.3 | exon | 58949356 | 58949502 | 58949356 | ID=MS.gene04976.t1.exon1;Parent=MS.gene04976.t1 |
| chr3.3 | CDS | 58949356 | 58949502 | 58949356 | ID=cds.MS.gene04976.t1;Parent=MS.gene04976.t1 |
| chr3.3 | exon | 58950404 | 58950452 | 58950404 | ID=MS.gene04976.t1.exon2;Parent=MS.gene04976.t1 |
| chr3.3 | CDS | 58950404 | 58950452 | 58950404 | ID=cds.MS.gene04976.t1;Parent=MS.gene04976.t1 |
| chr3.3 | exon | 58951198 | 58951640 | 58951198 | ID=MS.gene04976.t1.exon3;Parent=MS.gene04976.t1 |
| chr3.3 | CDS | 58951198 | 58951640 | 58951198 | ID=cds.MS.gene04976.t1;Parent=MS.gene04976.t1 |
| Gene Sequence |
| Protein sequence |
