Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06309.t1 | XP_003602710.1 | 99.1 | 538 | 5 | 0 | 57 | 594 | 54 | 591 | 5.10E-306 | 1059.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06309.t1 | Q6DEL2 | 41.9 | 561 | 290 | 9 | 57 | 594 | 83 | 630 | 2.0e-125 | 451.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06309.t1 | G7J2P6 | 99.1 | 538 | 5 | 0 | 57 | 594 | 54 | 591 | 3.6e-306 | 1059.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049193 | MS.gene06309 | 0.860476 | 2.01E-63 | -1.69E-46 |
MS.gene049209 | MS.gene06309 | 0.826172 | 3.14E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene06309 | MS.gene013222 | PPI |
MS.gene06309 | MS.gene41617 | PPI |
MS.gene06309 | MS.gene049193 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06309.t1 | MTR_3g098210 | 98.653 | 594 | 5 | 1 | 1 | 594 | 1 | 591 | 0.0 | 1212 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06309.t1 | AT5G08500 | 74.833 | 600 | 135 | 5 | 1 | 594 | 1 | 590 | 0.0 | 923 |
MS.gene06309.t1 | AT5G23575 | 70.805 | 596 | 169 | 2 | 1 | 594 | 1 | 593 | 0.0 | 879 |
MS.gene06309.t1 | AT5G08500 | 78.654 | 520 | 105 | 3 | 77 | 594 | 1 | 516 | 0.0 | 853 |
Find 141 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGAAGCGTGTTAATGAATT+TGG | 0.131589 | 3.1:-77863553 | MS.gene06309:CDS |
GTTATTGAGTTCTGGAAAAT+TGG | 0.159045 | 3.1:-77865536 | MS.gene06309:CDS |
GTACCATAGGTTGTGCTTTA+TGG | 0.176967 | 3.1:+77870212 | None:intergenic |
AATGACAAGTTCAACGAATT+TGG | 0.184215 | 3.1:-77869497 | MS.gene06309:CDS |
TCTGCACAGACATCCAATTT+TGG | 0.213631 | 3.1:-77865694 | MS.gene06309:intron |
ATCAAGTTAATCGTTATATT+TGG | 0.219766 | 3.1:+77867724 | None:intergenic |
GCTGCTTGAGGCTGGTATTC+TGG | 0.264542 | 3.1:+77869184 | None:intergenic |
TTGCCATTTCGTCATGCTAA+TGG | 0.267155 | 3.1:+77866347 | None:intergenic |
CGTGTTAATGAATTTGGATT+TGG | 0.282948 | 3.1:-77863547 | MS.gene06309:CDS |
TTAGGTGGTATGCCTGTATT+TGG | 0.291861 | 3.1:+77867179 | None:intergenic |
TTGGTTTGGTTATTGAGTTC+TGG | 0.295383 | 3.1:-77865544 | MS.gene06309:CDS |
CAAAGTCTAAAGCAGATAAA+AGG | 0.315173 | 3.1:-77869041 | MS.gene06309:CDS |
ATTGTATCAGAGGGTATTCT+TGG | 0.324658 | 3.1:-77865896 | MS.gene06309:intron |
TTCGTTGAACTTGTCATTCT+CGG | 0.326506 | 3.1:+77869502 | None:intergenic |
GCCACAAGAGCTGGTATTCT+TGG | 0.327792 | 3.1:-77864933 | MS.gene06309:CDS |
TTGAAATCTGCCAGATTGAT+AGG | 0.328541 | 3.1:-77865107 | MS.gene06309:intron |
CCATACGGCATACGGAATAT+TGG | 0.337756 | 3.1:+77869445 | None:intergenic |
TTAACACGCTTCTTGTCAAC+TGG | 0.348726 | 3.1:+77863562 | None:intergenic |
TCTAAGCTCTGGAGTTGGTT+TGG | 0.358890 | 3.1:-77865558 | MS.gene06309:CDS |
AACTGAACTCACACTTAATC+TGG | 0.361708 | 3.1:-77866379 | MS.gene06309:CDS |
AGAACAGCAGGTTCATTGTT+AGG | 0.364134 | 3.1:+77870250 | None:intergenic |
GTTCTATTTCTCCTTGCTGC+TGG | 0.367422 | 3.1:-77864985 | MS.gene06309:CDS |
TGCCATTTCGTCATGCTAAT+GGG | 0.386579 | 3.1:+77866348 | None:intergenic |
ACCTTTGGTATACATATATA+AGG | 0.389718 | 3.1:+77863593 | None:intergenic |
TACCAGCCTCAAGCAGCATT+TGG | 0.394036 | 3.1:-77869178 | MS.gene06309:CDS |
TTCCGTAACTACGGTGAATC+TGG | 0.404142 | 3.1:+77866298 | None:intergenic |
AGGATACATGGAGCGATGTT+AGG | 0.404857 | 3.1:+77867161 | None:intergenic |
CTGTGGAGTGGCGTGCATAT+TGG | 0.407502 | 3.1:-77867750 | MS.gene06309:CDS |
AACAACCATACGAATGATTC+CGG | 0.414707 | 3.1:+77870321 | None:intergenic |
ACAAGTTGTGTATACATGTT+TGG | 0.419210 | 3.1:-77864895 | MS.gene06309:intron |
TGGATGATTCTTCTAAGCTC+TGG | 0.419945 | 3.1:-77865569 | MS.gene06309:CDS |
GGTGGTGGATTTAGCTTAAC+CGG | 0.423006 | 3.1:-77870340 | MS.gene06309:CDS |
TAAACTCCCATTGTGCTTCA+AGG | 0.424914 | 3.1:+77869258 | None:intergenic |
TGTCGTTGTCAAGCAGATAA+AGG | 0.426516 | 3.1:+77865597 | None:intergenic |
CAACTGGATAAATCCACCTT+TGG | 0.435771 | 3.1:+77863578 | None:intergenic |
TTCCAGATTCACCGTAGTTA+CGG | 0.439614 | 3.1:-77866300 | MS.gene06309:CDS |
TACAGTCCTTGAAGCACAAT+GGG | 0.441225 | 3.1:-77869264 | MS.gene06309:intron |
TGCTTGACAACGACACCTCT+TGG | 0.451248 | 3.1:-77865589 | MS.gene06309:CDS |
TTCCAAATGCTGCTTGAGGC+TGG | 0.453642 | 3.1:+77869176 | None:intergenic |
GGATGATCAGCCTCCGGCTG+TGG | 0.454514 | 3.1:-77863518 | MS.gene06309:CDS |
CAATATTCCGTATGCCGTAT+GGG | 0.454841 | 3.1:-77869444 | MS.gene06309:CDS |
CTCGTACTTTAGTGAGTAAA+CGG | 0.455297 | 3.1:+77864957 | None:intergenic |
AATTCATTGAAGAAAATAGT+TGG | 0.456707 | 3.1:+77866444 | None:intergenic |
TGGCGAGGCTGATGAACTTA+AGG | 0.457629 | 3.1:-77866265 | MS.gene06309:intron |
CCGCCAACGGCAGTAGTTGA+AGG | 0.463154 | 3.1:-77870412 | MS.gene06309:CDS |
TGCAGAGACTGTTGCTGCTA+AGG | 0.463494 | 3.1:-77863491 | MS.gene06309:CDS |
GCTGCTGCTGCAGCACCGCA+AGG | 0.464618 | 3.1:-77870376 | MS.gene06309:CDS |
GGATAGTAGTTCCCAGTGAT+AGG | 0.468520 | 3.1:+77866465 | None:intergenic |
CGCGATCGAGAGTCATATGC+AGG | 0.468917 | 3.1:-77865057 | MS.gene06309:CDS |
GGCTGGTATTCTGGATCACT+AGG | 0.469298 | 3.1:+77869193 | None:intergenic |
CAATGAATTCTGGTTACTGC+GGG | 0.472207 | 3.1:-77866430 | MS.gene06309:CDS |
CCAATATTCCGTATGCCGTA+TGG | 0.475027 | 3.1:-77869445 | MS.gene06309:CDS |
GTCCCATTAGCATGACGAAA+TGG | 0.482655 | 3.1:-77866350 | MS.gene06309:CDS |
CAGAGAGTCATACCTCAGTC+GGG | 0.484118 | 3.1:+77869384 | None:intergenic |
GTAATGAAAGTGCTCTTGTA+TGG | 0.484515 | 3.1:-77869475 | MS.gene06309:CDS |
TACTGCCGTTGGCGGCGCCA+TGG | 0.486794 | 3.1:+77870420 | None:intergenic |
TTGTGCTTTATGGAAGAGGT+TGG | 0.489532 | 3.1:+77870222 | None:intergenic |
TAGGTTGTGCTTTATGGAAG+AGG | 0.490106 | 3.1:+77870218 | None:intergenic |
GATAAAAGGAAGAGTCTGTT+GGG | 0.491826 | 3.1:-77869027 | MS.gene06309:CDS |
GTTAATGAATTTGGATTTGG+AGG | 0.494425 | 3.1:-77863544 | MS.gene06309:CDS |
TTGAACATTGATCCTATCAC+TGG | 0.497137 | 3.1:-77866477 | MS.gene06309:CDS |
ATCTGCCAGATTGATAGGAC+AGG | 0.502982 | 3.1:-77865102 | MS.gene06309:intron |
AGTACGAGCGCCACAAGAGC+TGG | 0.505260 | 3.1:-77864942 | MS.gene06309:CDS |
TAGGTGGTATGCCTGTATTT+GGG | 0.506257 | 3.1:+77867180 | None:intergenic |
GTTTGCAGGTACCCAAATAC+AGG | 0.506950 | 3.1:-77867191 | MS.gene06309:intron |
GGAAGACAACAAGCCGGTGG+TGG | 0.507621 | 3.1:-77870355 | MS.gene06309:CDS |
ATTCTTCTAAGCTCTGGAGT+TGG | 0.508852 | 3.1:-77865563 | MS.gene06309:CDS |
GTAAGAGTCCTGGTACTCTC+AGG | 0.512160 | 3.1:+77869419 | None:intergenic |
CAATTCCATGGCGCCGCCAA+CGG | 0.517234 | 3.1:-77870425 | None:intergenic |
AGGTTGGAGATGAGAACAGC+AGG | 0.519304 | 3.1:+77870238 | None:intergenic |
TATTCTGGATCACTAGGGTC+AGG | 0.520918 | 3.1:+77869199 | None:intergenic |
TTGTAAGTCATCTGCCTCCA+TGG | 0.522314 | 3.1:+77864028 | None:intergenic |
TATCAGAGGGTATTCTTGGA+AGG | 0.523241 | 3.1:-77865892 | MS.gene06309:intron |
AGATAAAAGGAAGAGTCTGT+TGG | 0.523818 | 3.1:-77869028 | MS.gene06309:CDS |
CTTCCATAAAGCACAACCTA+TGG | 0.526232 | 3.1:-77870215 | MS.gene06309:intron |
TACGGTGAATCTGGAAGGAC+TGG | 0.528553 | 3.1:+77866307 | None:intergenic |
CCTTCAACTACTGCCGTTGG+CGG | 0.529608 | 3.1:+77870412 | None:intergenic |
TTATATATGTATACCAAAGG+TGG | 0.531475 | 3.1:-77863591 | MS.gene06309:CDS |
CTTAACCGGAATCATTCGTA+TGG | 0.533965 | 3.1:-77870326 | MS.gene06309:CDS |
TATGGGGACCTGAGAGTACC+AGG | 0.535301 | 3.1:-77869427 | MS.gene06309:CDS |
AGTTACGGAAGCATGCTTGA+TGG | 0.537448 | 3.1:-77866285 | MS.gene06309:CDS |
TGTAGTTGATGAACAGTTGA+GGG | 0.541948 | 3.1:+77864074 | None:intergenic |
ATGGTAATACCGAGGAGGTA+AGG | 0.546560 | 3.1:+77865865 | None:intergenic |
CGGAAGCATGCTTGATGGCG+AGG | 0.548193 | 3.1:-77866280 | MS.gene06309:CDS |
TCAGGTCCCCATACGGCATA+CGG | 0.548598 | 3.1:+77869437 | None:intergenic |
TCAGAGAGTCATACCTCAGT+CGG | 0.549969 | 3.1:+77869383 | None:intergenic |
CCGCCTTCAACTACTGCCGT+TGG | 0.551452 | 3.1:+77870409 | None:intergenic |
CAATATGCACGCCACTCCAC+AGG | 0.552147 | 3.1:+77867751 | None:intergenic |
GTCTCTGCAGAATCCACAGC+CGG | 0.553812 | 3.1:+77863505 | None:intergenic |
CCGGCTTGTTGTCTTCCTTG+CGG | 0.554826 | 3.1:+77870361 | None:intergenic |
GAAGGAAATCCTTACCTCCT+CGG | 0.556977 | 3.1:-77865874 | MS.gene06309:CDS |
CGACTTTCTGTCTTCCGTGA+TGG | 0.557096 | 3.1:-77863944 | MS.gene06309:intron |
TCCAAGAATACCAGCTCTTG+TGG | 0.557511 | 3.1:+77864932 | None:intergenic |
CTCACACTTAATCTGGAAGT+TGG | 0.558687 | 3.1:-77866372 | MS.gene06309:CDS |
TGGAAAAGCCATGCACATAG+AGG | 0.565940 | 3.1:-77865516 | MS.gene06309:intron |
ACAGAAAGTCGATGTAGTGT+TGG | 0.567209 | 3.1:+77863956 | None:intergenic |
AAATAATACCTCTATGTGCA+TGG | 0.568485 | 3.1:+77865508 | None:intergenic |
CAAGCATGCTTCCGTAACTA+CGG | 0.570032 | 3.1:+77866289 | None:intergenic |
AGGTGAGGATGATCAGCCTC+CGG | 0.574579 | 3.1:-77863524 | MS.gene06309:CDS |
CTACAGTCCTTGAAGCACAA+TGG | 0.577317 | 3.1:-77869265 | MS.gene06309:intron |
AAACGGCAAAGCCAGCAGCA+AGG | 0.581395 | 3.1:+77864974 | None:intergenic |
GTCCTTCCAAATGCTGCTTG+AGG | 0.585220 | 3.1:+77869172 | None:intergenic |
TCCTTATATATGTATACCAA+AGG | 0.585888 | 3.1:-77863594 | MS.gene06309:CDS |
AGCCTCAAGCAGCATTTGGA+AGG | 0.586407 | 3.1:-77869174 | MS.gene06309:CDS |
ATGAAGAAGAGACACAATCA+TGG | 0.589851 | 3.1:+77865846 | None:intergenic |
GTTGGGAGCTGATTCAAGTG+AGG | 0.590926 | 3.1:-77869010 | MS.gene06309:CDS |
GGTTAAGCTAAATCCACCAC+CGG | 0.598746 | 3.1:+77870342 | None:intergenic |
TTGGGAGCTGATTCAAGTGA+GGG | 0.599571 | 3.1:-77869009 | MS.gene06309:CDS |
ATAGTTCAAAGTAAGAGTCC+TGG | 0.600169 | 3.1:+77869409 | None:intergenic |
TTGTAGTTGATGAACAGTTG+AGG | 0.601534 | 3.1:+77864073 | None:intergenic |
CGATCGCGGAACCTCAACAT+AGG | 0.604261 | 3.1:+77865072 | None:intergenic |
AATCTGTTGCTCACTTACCA+TGG | 0.613517 | 3.1:-77864045 | MS.gene06309:CDS |
GTAACTACGGTGAATCTGGA+AGG | 0.618350 | 3.1:+77866302 | None:intergenic |
TCAATGAATTCTGGTTACTG+CGG | 0.620062 | 3.1:-77866431 | MS.gene06309:CDS |
TTCTAAAGACGAAGGTCCTG+TGG | 0.620226 | 3.1:-77867767 | MS.gene06309:CDS |
AGCAAGGAGAAATAGAACAT+AGG | 0.623804 | 3.1:+77864990 | None:intergenic |
AAGACGAAGGTCCTGTGGAG+TGG | 0.626096 | 3.1:-77867762 | MS.gene06309:CDS |
TGAATTTGGATTTGGAGGTG+AGG | 0.631243 | 3.1:-77863539 | MS.gene06309:CDS |
CAGGGAGGATACCTATGTTG+AGG | 0.631637 | 3.1:-77865083 | MS.gene06309:CDS |
AGAGAGTCATACCTCAGTCG+GGG | 0.633339 | 3.1:+77869385 | None:intergenic |
GGTACTCTCAGGTCCCCATA+CGG | 0.633751 | 3.1:+77869430 | None:intergenic |
GAAGATGATTCTAAAGACGA+AGG | 0.639851 | 3.1:-77867775 | MS.gene06309:CDS |
AATATTCCGTATGCCGTATG+GGG | 0.640667 | 3.1:-77869443 | MS.gene06309:CDS |
CTGCATATGACTCTCGATCG+CGG | 0.640683 | 3.1:+77865058 | None:intergenic |
TGGTAACAAACTTACCATCA+CGG | 0.645684 | 3.1:+77863930 | None:intergenic |
CCGCAAGGAAGACAACAAGC+CGG | 0.649134 | 3.1:-77870361 | MS.gene06309:CDS |
ATACATGGAGCGATGTTAGG+TGG | 0.654652 | 3.1:+77867164 | None:intergenic |
GCTGGTATTCTGGATCACTA+GGG | 0.656003 | 3.1:+77869194 | None:intergenic |
TGAACATTGATCCTATCACT+GGG | 0.661401 | 3.1:-77866476 | MS.gene06309:CDS |
GCTTAGAAGAATCATCCAAG+AGG | 0.672946 | 3.1:+77865574 | None:intergenic |
GAGAGTCATACCTCAGTCGG+GGG | 0.681224 | 3.1:+77869386 | None:intergenic |
TCTGCCAGATTGATAGGACA+GGG | 0.681740 | 3.1:-77865101 | MS.gene06309:intron |
GCGATCGAGAGTCATATGCA+GGG | 0.685078 | 3.1:-77865056 | MS.gene06309:CDS |
TCTGCAGAATCCACAGCCGG+AGG | 0.690792 | 3.1:+77863508 | None:intergenic |
CAAGGAAGACAACAAGCCGG+TGG | 0.696577 | 3.1:-77870358 | MS.gene06309:CDS |
CCAACGGCAGTAGTTGAAGG+CGG | 0.703078 | 3.1:-77870409 | MS.gene06309:CDS |
CTGTTGCTCACTTACCATGG+AGG | 0.704164 | 3.1:-77864042 | MS.gene06309:CDS |
CAATCATGGTAATACCGAGG+AGG | 0.720550 | 3.1:+77865860 | None:intergenic |
TGAGGGTCAAGTGACACCCG+AGG | 0.723382 | 3.1:-77868992 | MS.gene06309:intron |
GCCAGATTGATAGGACAGGG+AGG | 0.726960 | 3.1:-77865098 | MS.gene06309:intron |
ACACAATCATGGTAATACCG+AGG | 0.736858 | 3.1:+77865857 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 77863468 | 77870440 | 77863468 | ID=MS.gene06309 |
chr3.1 | mRNA | 77863468 | 77870440 | 77863468 | ID=MS.gene06309.t1;Parent=MS.gene06309 |
chr3.1 | exon | 77870216 | 77870440 | 77870216 | ID=MS.gene06309.t1.exon1;Parent=MS.gene06309.t1 |
chr3.1 | CDS | 77870216 | 77870440 | 77870216 | ID=cds.MS.gene06309.t1;Parent=MS.gene06309.t1 |
chr3.1 | exon | 77869397 | 77869543 | 77869397 | ID=MS.gene06309.t1.exon2;Parent=MS.gene06309.t1 |
chr3.1 | CDS | 77869397 | 77869543 | 77869397 | ID=cds.MS.gene06309.t1;Parent=MS.gene06309.t1 |
chr3.1 | exon | 77869167 | 77869281 | 77869167 | ID=MS.gene06309.t1.exon3;Parent=MS.gene06309.t1 |
chr3.1 | CDS | 77869167 | 77869281 | 77869167 | ID=cds.MS.gene06309.t1;Parent=MS.gene06309.t1 |
chr3.1 | exon | 77868993 | 77869081 | 77868993 | ID=MS.gene06309.t1.exon4;Parent=MS.gene06309.t1 |
chr3.1 | CDS | 77868993 | 77869081 | 77868993 | ID=cds.MS.gene06309.t1;Parent=MS.gene06309.t1 |
chr3.1 | exon | 77867709 | 77867812 | 77867709 | ID=MS.gene06309.t1.exon5;Parent=MS.gene06309.t1 |
chr3.1 | CDS | 77867709 | 77867812 | 77867709 | ID=cds.MS.gene06309.t1;Parent=MS.gene06309.t1 |
chr3.1 | exon | 77867168 | 77867205 | 77867168 | ID=MS.gene06309.t1.exon6;Parent=MS.gene06309.t1 |
chr3.1 | CDS | 77867168 | 77867205 | 77867168 | ID=cds.MS.gene06309.t1;Parent=MS.gene06309.t1 |
chr3.1 | exon | 77866266 | 77866501 | 77866266 | ID=MS.gene06309.t1.exon7;Parent=MS.gene06309.t1 |
chr3.1 | CDS | 77866266 | 77866501 | 77866266 | ID=cds.MS.gene06309.t1;Parent=MS.gene06309.t1 |
chr3.1 | exon | 77865815 | 77865908 | 77865815 | ID=MS.gene06309.t1.exon8;Parent=MS.gene06309.t1 |
chr3.1 | CDS | 77865815 | 77865908 | 77865815 | ID=cds.MS.gene06309.t1;Parent=MS.gene06309.t1 |
chr3.1 | exon | 77865517 | 77865707 | 77865517 | ID=MS.gene06309.t1.exon9;Parent=MS.gene06309.t1 |
chr3.1 | CDS | 77865517 | 77865707 | 77865517 | ID=cds.MS.gene06309.t1;Parent=MS.gene06309.t1 |
chr3.1 | exon | 77864896 | 77865115 | 77864896 | ID=MS.gene06309.t1.exon10;Parent=MS.gene06309.t1 |
chr3.1 | CDS | 77864896 | 77865115 | 77864896 | ID=cds.MS.gene06309.t1;Parent=MS.gene06309.t1 |
chr3.1 | exon | 77863945 | 77864112 | 77863945 | ID=MS.gene06309.t1.exon11;Parent=MS.gene06309.t1 |
chr3.1 | CDS | 77863945 | 77864112 | 77863945 | ID=cds.MS.gene06309.t1;Parent=MS.gene06309.t1 |
chr3.1 | exon | 77863468 | 77863625 | 77863468 | ID=MS.gene06309.t1.exon12;Parent=MS.gene06309.t1 |
chr3.1 | CDS | 77863468 | 77863625 | 77863468 | ID=cds.MS.gene06309.t1;Parent=MS.gene06309.t1 |
Gene Sequence |
Protein sequence |