Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049193.t1 | XP_003602710.1 | 94.6 | 591 | 32 | 0 | 1 | 591 | 1 | 591 | 0.00E+00 | 1095.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049193.t1 | Q6DEL2 | 40.8 | 586 | 308 | 10 | 32 | 591 | 58 | 630 | 2.8e-124 | 447.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049193.t1 | G7J2P6 | 94.6 | 591 | 32 | 0 | 1 | 591 | 1 | 591 | 0.0e+00 | 1095.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049193 | MS.gene050213 | 0.803696 | 3.08E-49 | -1.69E-46 |
| MS.gene049193 | MS.gene050257 | 0.819929 | 8.97E-53 | -1.69E-46 |
| MS.gene049193 | MS.gene050258 | 0.807454 | 5.01E-50 | -1.69E-46 |
| MS.gene049193 | MS.gene050348 | 0.803693 | 3.09E-49 | -1.69E-46 |
| MS.gene049193 | MS.gene052776 | 0.807081 | 6.02E-50 | -1.69E-46 |
| MS.gene049193 | MS.gene053143 | 0.840453 | 8.62E-58 | -1.69E-46 |
| MS.gene049193 | MS.gene054585 | 0.82665 | 2.42E-54 | -1.69E-46 |
| MS.gene049193 | MS.gene054644 | 0.804123 | 2.51E-49 | -1.69E-46 |
| MS.gene049193 | MS.gene06309 | 0.860476 | 2.01E-63 | -1.69E-46 |
| MS.gene049193 | MS.gene064425 | 0.814706 | 1.34E-51 | -1.69E-46 |
| MS.gene049193 | MS.gene067279 | 0.820655 | 6.12E-53 | -1.69E-46 |
| MS.gene049193 | MS.gene067773 | 0.802913 | 4.48E-49 | -1.69E-46 |
| MS.gene049193 | MS.gene070003 | 0.821255 | 4.45E-53 | -1.69E-46 |
| MS.gene049193 | MS.gene07066 | 0.807248 | 5.55E-50 | -1.69E-46 |
| MS.gene049193 | MS.gene072405 | 0.800622 | 1.32E-48 | -1.69E-46 |
| MS.gene049193 | MS.gene07880 | 0.803808 | 2.92E-49 | -1.69E-46 |
| MS.gene049193 | MS.gene09980 | 0.845169 | 4.80E-59 | -1.69E-46 |
| MS.gene049193 | MS.gene20018 | 0.821145 | 4.72E-53 | -1.69E-46 |
| MS.gene049193 | MS.gene20117 | 0.800295 | 1.54E-48 | -1.69E-46 |
| MS.gene049193 | MS.gene20262 | 0.80569 | 1.18E-49 | -1.69E-46 |
| MS.gene049193 | MS.gene26030 | 0.806233 | 9.09E-50 | -1.69E-46 |
| MS.gene049193 | MS.gene28454 | 0.802972 | 4.35E-49 | -1.69E-46 |
| MS.gene049193 | MS.gene33952 | 0.843637 | 1.24E-58 | -1.69E-46 |
| MS.gene049193 | MS.gene34509 | 0.811744 | 6.01E-51 | -1.69E-46 |
| MS.gene049193 | MS.gene34515 | 0.820697 | 5.98E-53 | -1.69E-46 |
| MS.gene049193 | MS.gene35564 | 0.821807 | 3.32E-53 | -1.69E-46 |
| MS.gene049193 | MS.gene36285 | 0.801419 | 9.09E-49 | -1.69E-46 |
| MS.gene049193 | MS.gene36542 | 0.819501 | 1.12E-52 | -1.69E-46 |
| MS.gene049193 | MS.gene38302 | 0.853539 | 2.24E-61 | -1.69E-46 |
| MS.gene049193 | MS.gene39046 | 0.807583 | 4.71E-50 | -1.69E-46 |
| MS.gene049193 | MS.gene40806 | 0.825503 | 4.52E-54 | -1.69E-46 |
| MS.gene049193 | MS.gene42528 | 0.819205 | 1.31E-52 | -1.69E-46 |
| MS.gene049193 | MS.gene44170 | 0.837336 | 5.52E-57 | -1.69E-46 |
| MS.gene049193 | MS.gene45789 | 0.846395 | 2.23E-59 | -1.69E-46 |
| MS.gene049193 | MS.gene48756 | 0.834208 | 3.42E-56 | -1.69E-46 |
| MS.gene049193 | MS.gene51929 | 0.824476 | 7.91E-54 | -1.69E-46 |
| MS.gene049193 | MS.gene52740 | 0.804833 | 1.79E-49 | -1.69E-46 |
| MS.gene049193 | MS.gene58134 | 0.803886 | 2.81E-49 | -1.69E-46 |
| MS.gene049193 | MS.gene60550 | 0.800681 | 1.29E-48 | -1.69E-46 |
| MS.gene049193 | MS.gene60551 | 0.816692 | 4.85E-52 | -1.69E-46 |
| MS.gene049193 | MS.gene61587 | 0.801817 | 7.53E-49 | -1.69E-46 |
| MS.gene049193 | MS.gene63930 | 0.834109 | 3.62E-56 | -1.69E-46 |
| MS.gene049193 | MS.gene67638 | 0.805484 | 1.31E-49 | -1.69E-46 |
| MS.gene049193 | MS.gene70750 | 0.823355 | 1.45E-53 | -1.69E-46 |
| MS.gene049193 | MS.gene74235 | 0.817029 | 4.08E-52 | -1.69E-46 |
| MS.gene049193 | MS.gene75507 | 0.818563 | 1.84E-52 | -1.69E-46 |
| MS.gene049193 | MS.gene79095 | 0.810085 | 1.37E-50 | -1.69E-46 |
| MS.gene049193 | MS.gene79561 | 0.818433 | 1.97E-52 | -1.69E-46 |
| MS.gene049193 | MS.gene79563 | 0.83289 | 7.30E-56 | -1.69E-46 |
| MS.gene049193 | MS.gene81044 | 0.802943 | 4.41E-49 | -1.69E-46 |
| MS.gene049193 | MS.gene82037 | 0.825405 | 4.77E-54 | -1.69E-46 |
| MS.gene049193 | MS.gene82912 | 0.800029 | 1.75E-48 | -1.69E-46 |
| MS.gene049193 | MS.gene84703 | 0.80027 | 1.56E-48 | -1.69E-46 |
| MS.gene049193 | MS.gene88032 | 0.830546 | 2.76E-55 | -1.69E-46 |
| MS.gene049193 | MS.gene89369 | 0.814496 | 1.50E-51 | -1.69E-46 |
| MS.gene049193 | MS.gene90121 | 0.833769 | 4.41E-56 | -1.69E-46 |
| MS.gene049193 | MS.gene90561 | 0.823094 | 1.67E-53 | -1.69E-46 |
| MS.gene049193 | MS.gene90778 | 0.831267 | 1.84E-55 | -1.69E-46 |
| MS.gene049193 | MS.gene92256 | 0.801573 | 8.45E-49 | -1.69E-46 |
| MS.gene049193 | MS.gene93728 | 0.806302 | 8.79E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene049193 | MS.gene41617 | PPI |
| MS.gene049193 | MS.gene013222 | PPI |
| MS.gene06309 | MS.gene049193 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049193.t1 | MTR_3g098210 | 98.646 | 591 | 8 | 0 | 1 | 591 | 1 | 591 | 0.0 | 1211 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049193.t1 | AT5G08500 | 75.209 | 597 | 135 | 5 | 1 | 591 | 1 | 590 | 0.0 | 920 |
| MS.gene049193.t1 | AT5G23575 | 72.300 | 574 | 154 | 2 | 20 | 591 | 23 | 593 | 0.0 | 872 |
| MS.gene049193.t1 | AT5G08500 | 78.654 | 520 | 105 | 3 | 74 | 591 | 1 | 516 | 0.0 | 850 |
Find 140 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAGCGTGTTAATGAATT+TGG | 0.131589 | 3.3:-80801708 | MS.gene049193:CDS |
| GTTATTGAGTTCTGGAAAAT+TGG | 0.159045 | 3.3:-80803695 | MS.gene049193:CDS |
| GTACCATAGGTTGTGCTTTA+TGG | 0.176967 | 3.3:+80808369 | None:intergenic |
| AATGACAAGTTCAACGAATT+TGG | 0.184215 | 3.3:-80807662 | MS.gene049193:CDS |
| TCTGCACAGACATCCAATTT+TGG | 0.213631 | 3.3:-80803853 | MS.gene049193:intron |
| ATCAAGTTAATCGTTATATT+TGG | 0.219766 | 3.3:+80805883 | None:intergenic |
| GCTGCTTGAGGCTGGTATTC+TGG | 0.264542 | 3.3:+80807349 | None:intergenic |
| TTGCCATTTCGTCATGCTAA+TGG | 0.267155 | 3.3:+80804508 | None:intergenic |
| CGTGTTAATGAATTTGGATT+TGG | 0.282948 | 3.3:-80801702 | MS.gene049193:CDS |
| TTAGGTGGTATGCCTGTATT+TGG | 0.291861 | 3.3:+80805338 | None:intergenic |
| TTGGTTTGGTTATTGAGTTC+TGG | 0.295383 | 3.3:-80803703 | MS.gene049193:CDS |
| CAAAGTCTAAAGCAGATAAA+AGG | 0.315173 | 3.3:-80807201 | MS.gene049193:CDS |
| ATTGTATCAGAGGGTATTCT+TGG | 0.324658 | 3.3:-80804055 | MS.gene049193:intron |
| TTCGTTGAACTTGTCATTCT+CGG | 0.326506 | 3.3:+80807667 | None:intergenic |
| GCCACAAGAGCTGGTATTCT+TGG | 0.327792 | 3.3:-80803092 | MS.gene049193:CDS |
| TTGAAATCTGCCAGATTGAT+AGG | 0.328541 | 3.3:-80803266 | MS.gene049193:intron |
| CCATACGGCATACGGAATAT+TGG | 0.337756 | 3.3:+80807610 | None:intergenic |
| TTAACACGCTTCTTGTCAAC+TGG | 0.348726 | 3.3:+80801717 | None:intergenic |
| GGTGGTGGATTTAGCTTTAC+CGG | 0.350500 | 3.3:-80808497 | MS.gene049193:CDS |
| TCTAAGCTCTGGAGTTGGTT+TGG | 0.358890 | 3.3:-80803717 | MS.gene049193:CDS |
| AACTGAACTCACACTTAATC+TGG | 0.361708 | 3.3:-80804540 | MS.gene049193:CDS |
| AGAACAGCAGGTTCATTGTT+AGG | 0.364134 | 3.3:+80808407 | None:intergenic |
| GTTCTATTTCTCCTTGCTGC+TGG | 0.367422 | 3.3:-80803144 | MS.gene049193:CDS |
| CTGTGGAGTGGCGTGTATAT+TGG | 0.383019 | 3.3:-80805909 | MS.gene049193:CDS |
| TGCCATTTCGTCATGCTAAT+GGG | 0.386579 | 3.3:+80804509 | None:intergenic |
| ACCTTTGGTATACATATATA+AGG | 0.389718 | 3.3:+80801748 | None:intergenic |
| TACCAGCCTCAAGCAGCATT+TGG | 0.394036 | 3.3:-80807343 | MS.gene049193:CDS |
| TTCCGTAACTACGGTGAATC+TGG | 0.404142 | 3.3:+80804459 | None:intergenic |
| AGGATACATGGAGCGATGTT+AGG | 0.404857 | 3.3:+80805320 | None:intergenic |
| AACAACCATACGAATGATTC+CGG | 0.414707 | 3.3:+80808478 | None:intergenic |
| ACAAGTTGTGTATACATGTT+TGG | 0.419210 | 3.3:-80803054 | MS.gene049193:intron |
| TGGATGATTCTTCTAAGCTC+TGG | 0.419945 | 3.3:-80803728 | MS.gene049193:CDS |
| TAAACTCCCATTGTGCTTCA+AGG | 0.424914 | 3.3:+80807423 | None:intergenic |
| TGTCGTTGTCAAGCAGATAA+AGG | 0.426516 | 3.3:+80803756 | None:intergenic |
| CAACTGGATAAATCCACCTT+TGG | 0.435771 | 3.3:+80801733 | None:intergenic |
| TTCCAGATTCACCGTAGTTA+CGG | 0.439614 | 3.3:-80804461 | MS.gene049193:CDS |
| TACAGTCCTTGAAGCACAAT+GGG | 0.441225 | 3.3:-80807429 | MS.gene049193:intron |
| TGCTTGACAACGACACCTCT+TGG | 0.451248 | 3.3:-80803748 | MS.gene049193:CDS |
| TTCCAAATGCTGCTTGAGGC+TGG | 0.453642 | 3.3:+80807341 | None:intergenic |
| GGATGATCAGCCTCCGGCTG+TGG | 0.454514 | 3.3:-80801673 | MS.gene049193:CDS |
| CAATATTCCGTATGCCGTAT+GGG | 0.454841 | 3.3:-80807609 | MS.gene049193:CDS |
| CTCGTACTTTAGTGAGTAAA+CGG | 0.455297 | 3.3:+80803116 | None:intergenic |
| AATTCATTGAAGAAAATAGT+TGG | 0.456707 | 3.3:+80804605 | None:intergenic |
| TGGCGAGGCTGATGAACTTA+AGG | 0.457629 | 3.3:-80804426 | MS.gene049193:intron |
| CCGCCAACGGCAGTAGTTGA+AGG | 0.463154 | 3.3:-80808560 | MS.gene049193:CDS |
| TGCAGAGACTGTTGCTGCTA+AGG | 0.463494 | 3.3:-80801646 | MS.gene049193:CDS |
| GGATAGTAGTTCCCAGTGAT+AGG | 0.468520 | 3.3:+80804626 | None:intergenic |
| CGCGATCGAGAGTCATATGC+AGG | 0.468917 | 3.3:-80803216 | MS.gene049193:CDS |
| GGCTGGTATTCTGGATCACT+AGG | 0.469298 | 3.3:+80807358 | None:intergenic |
| CGATTCCATGGCGCCGCCAA+CGG | 0.471605 | 3.3:-80808573 | None:intergenic |
| CAATGAATTCTGGTTACTGC+GGG | 0.472207 | 3.3:-80804591 | MS.gene049193:CDS |
| CCAATATTCCGTATGCCGTA+TGG | 0.475027 | 3.3:-80807610 | MS.gene049193:CDS |
| GTCCCATTAGCATGACGAAA+TGG | 0.482655 | 3.3:-80804511 | MS.gene049193:CDS |
| CAGAGAGTCATACCTCAGTC+GGG | 0.484118 | 3.3:+80807549 | None:intergenic |
| GTAATGAAAGTGCTCTTGTA+TGG | 0.484515 | 3.3:-80807640 | MS.gene049193:CDS |
| TACTGCCGTTGGCGGCGCCA+TGG | 0.486794 | 3.3:+80808568 | None:intergenic |
| TTGTGCTTTATGGAAGAGGT+TGG | 0.489532 | 3.3:+80808379 | None:intergenic |
| TAGGTTGTGCTTTATGGAAG+AGG | 0.490106 | 3.3:+80808375 | None:intergenic |
| GATAAAAGGAAGAGTCTGTT+GGG | 0.491826 | 3.3:-80807187 | MS.gene049193:CDS |
| GTTAATGAATTTGGATTTGG+AGG | 0.494425 | 3.3:-80801699 | MS.gene049193:CDS |
| TTGAACATTGATCCTATCAC+TGG | 0.497137 | 3.3:-80804638 | MS.gene049193:CDS |
| ATCTGCCAGATTGATAGGAC+AGG | 0.502982 | 3.3:-80803261 | MS.gene049193:intron |
| AGTACGAGCGCCACAAGAGC+TGG | 0.505260 | 3.3:-80803101 | MS.gene049193:CDS |
| TAGGTGGTATGCCTGTATTT+GGG | 0.506257 | 3.3:+80805339 | None:intergenic |
| GTTTGCAGGTACCCAAATAC+AGG | 0.506950 | 3.3:-80805350 | MS.gene049193:intron |
| ATTCTTCTAAGCTCTGGAGT+TGG | 0.508852 | 3.3:-80803722 | MS.gene049193:CDS |
| GTAAGAGTCCTGGTACTCTC+AGG | 0.512160 | 3.3:+80807584 | None:intergenic |
| AGGTTGGAGATGAGAACAGC+AGG | 0.519304 | 3.3:+80808395 | None:intergenic |
| TATTCTGGATCACTAGGGTC+AGG | 0.520918 | 3.3:+80807364 | None:intergenic |
| TTGTAAGTCATCTGCCTCCA+TGG | 0.522314 | 3.3:+80802183 | None:intergenic |
| TATCAGAGGGTATTCTTGGA+AGG | 0.523241 | 3.3:-80804051 | MS.gene049193:intron |
| AGATAAAAGGAAGAGTCTGT+TGG | 0.523818 | 3.3:-80807188 | MS.gene049193:CDS |
| CTTCCATAAAGCACAACCTA+TGG | 0.526232 | 3.3:-80808372 | MS.gene049193:intron |
| TACGGTGAATCTGGAAGGAC+TGG | 0.528553 | 3.3:+80804468 | None:intergenic |
| CCTTCAACTACTGCCGTTGG+CGG | 0.529608 | 3.3:+80808560 | None:intergenic |
| TTATATATGTATACCAAAGG+TGG | 0.531475 | 3.3:-80801746 | MS.gene049193:CDS |
| CTTTACCGGAATCATTCGTA+TGG | 0.531945 | 3.3:-80808483 | MS.gene049193:CDS |
| TATGGGGACCTGAGAGTACC+AGG | 0.535301 | 3.3:-80807592 | MS.gene049193:CDS |
| AGTTACGGAAGCATGCTTGA+TGG | 0.537448 | 3.3:-80804446 | MS.gene049193:CDS |
| TGTAGTTGATGAACAGTTGA+GGG | 0.541948 | 3.3:+80802229 | None:intergenic |
| ATGGTAATACCGAGGAGGTA+AGG | 0.546560 | 3.3:+80804024 | None:intergenic |
| CGGAAGCATGCTTGATGGCG+AGG | 0.548193 | 3.3:-80804441 | MS.gene049193:CDS |
| TCAGGTCCCCATACGGCATA+CGG | 0.548598 | 3.3:+80807602 | None:intergenic |
| TCAGAGAGTCATACCTCAGT+CGG | 0.549969 | 3.3:+80807548 | None:intergenic |
| CCGCCTTCAACTACTGCCGT+TGG | 0.551452 | 3.3:+80808557 | None:intergenic |
| GTCTCTGCAGAATCCACAGC+CGG | 0.553812 | 3.3:+80801660 | None:intergenic |
| GGTAGACAACAAGCTGGTGG+TGG | 0.556851 | 3.3:-80808512 | MS.gene049193:CDS |
| GAAGGAAATCCTTACCTCCT+CGG | 0.556977 | 3.3:-80804033 | MS.gene049193:CDS |
| CGACTTTCTGTCTTCCGTGA+TGG | 0.557096 | 3.3:-80802099 | MS.gene049193:intron |
| TCCAAGAATACCAGCTCTTG+TGG | 0.557511 | 3.3:+80803091 | None:intergenic |
| CTCACACTTAATCTGGAAGT+TGG | 0.558687 | 3.3:-80804533 | MS.gene049193:CDS |
| CAATATACACGCCACTCCAC+AGG | 0.563086 | 3.3:+80805910 | None:intergenic |
| TGGAAAAGCCATGCACATAG+AGG | 0.565940 | 3.3:-80803675 | MS.gene049193:intron |
| ACAGAAAGTCGATGTAGTGT+TGG | 0.567209 | 3.3:+80802111 | None:intergenic |
| AAATAATACCTCTATGTGCA+TGG | 0.568485 | 3.3:+80803667 | None:intergenic |
| CAAGCATGCTTCCGTAACTA+CGG | 0.570032 | 3.3:+80804450 | None:intergenic |
| AGGTGAGGATGATCAGCCTC+CGG | 0.574579 | 3.3:-80801679 | MS.gene049193:CDS |
| GACGCTGATGCAGCACCGCA+AGG | 0.576223 | 3.3:-80808533 | MS.gene049193:CDS |
| CTACAGTCCTTGAAGCACAA+TGG | 0.577317 | 3.3:-80807430 | MS.gene049193:intron |
| AAACGGCAAAGCCAGCAGCA+AGG | 0.581395 | 3.3:+80803133 | None:intergenic |
| GTCCTTCCAAATGCTGCTTG+AGG | 0.585220 | 3.3:+80807337 | None:intergenic |
| TCCTTATATATGTATACCAA+AGG | 0.585888 | 3.3:-80801749 | MS.gene049193:CDS |
| AGCCTCAAGCAGCATTTGGA+AGG | 0.586407 | 3.3:-80807339 | MS.gene049193:CDS |
| ATGAAGAAGAGACACAATCA+TGG | 0.589851 | 3.3:+80804005 | None:intergenic |
| GTTGGGAGCTGATTCAAGTG+AGG | 0.590926 | 3.3:-80807170 | MS.gene049193:CDS |
| TTGGGAGCTGATTCAAGTGA+GGG | 0.599571 | 3.3:-80807169 | MS.gene049193:CDS |
| ATAGTTCAAAGTAAGAGTCC+TGG | 0.600169 | 3.3:+80807574 | None:intergenic |
| TTGTAGTTGATGAACAGTTG+AGG | 0.601534 | 3.3:+80802228 | None:intergenic |
| CGATCGCGGAACCTCAACAT+AGG | 0.604261 | 3.3:+80803231 | None:intergenic |
| AATCTGTTGCTCACTTACCA+TGG | 0.613517 | 3.3:-80802200 | MS.gene049193:CDS |
| GTAACTACGGTGAATCTGGA+AGG | 0.618350 | 3.3:+80804463 | None:intergenic |
| TCAATGAATTCTGGTTACTG+CGG | 0.620062 | 3.3:-80804592 | MS.gene049193:CDS |
| TTCTAAAGACGAAGGTCCTG+TGG | 0.620226 | 3.3:-80805926 | MS.gene049193:CDS |
| AGCAAGGAGAAATAGAACAT+AGG | 0.623804 | 3.3:+80803149 | None:intergenic |
| AAGACGAAGGTCCTGTGGAG+TGG | 0.626096 | 3.3:-80805921 | MS.gene049193:CDS |
| TGAATTTGGATTTGGAGGTG+AGG | 0.631243 | 3.3:-80801694 | MS.gene049193:CDS |
| CAGGGAGGATACCTATGTTG+AGG | 0.631637 | 3.3:-80803242 | MS.gene049193:CDS |
| AGAGAGTCATACCTCAGTCG+GGG | 0.633339 | 3.3:+80807550 | None:intergenic |
| GGTACTCTCAGGTCCCCATA+CGG | 0.633751 | 3.3:+80807595 | None:intergenic |
| GAAGATGATTCTAAAGACGA+AGG | 0.639851 | 3.3:-80805934 | MS.gene049193:CDS |
| AATATTCCGTATGCCGTATG+GGG | 0.640667 | 3.3:-80807608 | MS.gene049193:CDS |
| CTGCATATGACTCTCGATCG+CGG | 0.640683 | 3.3:+80803217 | None:intergenic |
| TGGTAACAAACTTACCATCA+CGG | 0.645684 | 3.3:+80802085 | None:intergenic |
| CCAGCTTGTTGTCTACCTTG+CGG | 0.653906 | 3.3:+80808518 | None:intergenic |
| ATACATGGAGCGATGTTAGG+TGG | 0.654652 | 3.3:+80805323 | None:intergenic |
| GCTGGTATTCTGGATCACTA+GGG | 0.656003 | 3.3:+80807359 | None:intergenic |
| CCGCAAGGTAGACAACAAGC+TGG | 0.656180 | 3.3:-80808518 | MS.gene049193:CDS |
| TGAACATTGATCCTATCACT+GGG | 0.661401 | 3.3:-80804637 | MS.gene049193:CDS |
| GCTTAGAAGAATCATCCAAG+AGG | 0.672946 | 3.3:+80803733 | None:intergenic |
| GAGAGTCATACCTCAGTCGG+GGG | 0.681224 | 3.3:+80807551 | None:intergenic |
| TCTGCCAGATTGATAGGACA+GGG | 0.681740 | 3.3:-80803260 | MS.gene049193:intron |
| GCGATCGAGAGTCATATGCA+GGG | 0.685078 | 3.3:-80803215 | MS.gene049193:CDS |
| TCTGCAGAATCCACAGCCGG+AGG | 0.690792 | 3.3:+80801663 | None:intergenic |
| CCAACGGCAGTAGTTGAAGG+CGG | 0.703078 | 3.3:-80808557 | MS.gene049193:CDS |
| CTGTTGCTCACTTACCATGG+AGG | 0.704164 | 3.3:-80802197 | MS.gene049193:CDS |
| CAAGGTAGACAACAAGCTGG+TGG | 0.716390 | 3.3:-80808515 | MS.gene049193:CDS |
| CAATCATGGTAATACCGAGG+AGG | 0.720550 | 3.3:+80804019 | None:intergenic |
| TGAGGGTCAAGTGACACCCG+AGG | 0.723382 | 3.3:-80807152 | MS.gene049193:intron |
| GCCAGATTGATAGGACAGGG+AGG | 0.726960 | 3.3:-80803257 | MS.gene049193:intron |
| ACACAATCATGGTAATACCG+AGG | 0.736858 | 3.3:+80804016 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 80801623 | 80808588 | 80801623 | ID=MS.gene049193 |
| chr3.3 | mRNA | 80801623 | 80808588 | 80801623 | ID=MS.gene049193.t1;Parent=MS.gene049193 |
| chr3.3 | exon | 80808373 | 80808588 | 80808373 | ID=MS.gene049193.t1.exon1;Parent=MS.gene049193.t1 |
| chr3.3 | CDS | 80808373 | 80808588 | 80808373 | ID=cds.MS.gene049193.t1;Parent=MS.gene049193.t1 |
| chr3.3 | exon | 80807562 | 80807708 | 80807562 | ID=MS.gene049193.t1.exon2;Parent=MS.gene049193.t1 |
| chr3.3 | CDS | 80807562 | 80807708 | 80807562 | ID=cds.MS.gene049193.t1;Parent=MS.gene049193.t1 |
| chr3.3 | exon | 80807332 | 80807446 | 80807332 | ID=MS.gene049193.t1.exon3;Parent=MS.gene049193.t1 |
| chr3.3 | CDS | 80807332 | 80807446 | 80807332 | ID=cds.MS.gene049193.t1;Parent=MS.gene049193.t1 |
| chr3.3 | exon | 80807153 | 80807241 | 80807153 | ID=MS.gene049193.t1.exon4;Parent=MS.gene049193.t1 |
| chr3.3 | CDS | 80807153 | 80807241 | 80807153 | ID=cds.MS.gene049193.t1;Parent=MS.gene049193.t1 |
| chr3.3 | exon | 80805868 | 80805971 | 80805868 | ID=MS.gene049193.t1.exon5;Parent=MS.gene049193.t1 |
| chr3.3 | CDS | 80805868 | 80805971 | 80805868 | ID=cds.MS.gene049193.t1;Parent=MS.gene049193.t1 |
| chr3.3 | exon | 80805327 | 80805364 | 80805327 | ID=MS.gene049193.t1.exon6;Parent=MS.gene049193.t1 |
| chr3.3 | CDS | 80805327 | 80805364 | 80805327 | ID=cds.MS.gene049193.t1;Parent=MS.gene049193.t1 |
| chr3.3 | exon | 80804427 | 80804662 | 80804427 | ID=MS.gene049193.t1.exon7;Parent=MS.gene049193.t1 |
| chr3.3 | CDS | 80804427 | 80804662 | 80804427 | ID=cds.MS.gene049193.t1;Parent=MS.gene049193.t1 |
| chr3.3 | exon | 80803974 | 80804067 | 80803974 | ID=MS.gene049193.t1.exon8;Parent=MS.gene049193.t1 |
| chr3.3 | CDS | 80803974 | 80804067 | 80803974 | ID=cds.MS.gene049193.t1;Parent=MS.gene049193.t1 |
| chr3.3 | exon | 80803676 | 80803866 | 80803676 | ID=MS.gene049193.t1.exon9;Parent=MS.gene049193.t1 |
| chr3.3 | CDS | 80803676 | 80803866 | 80803676 | ID=cds.MS.gene049193.t1;Parent=MS.gene049193.t1 |
| chr3.3 | exon | 80803055 | 80803274 | 80803055 | ID=MS.gene049193.t1.exon10;Parent=MS.gene049193.t1 |
| chr3.3 | CDS | 80803055 | 80803274 | 80803055 | ID=cds.MS.gene049193.t1;Parent=MS.gene049193.t1 |
| chr3.3 | exon | 80802100 | 80802267 | 80802100 | ID=MS.gene049193.t1.exon11;Parent=MS.gene049193.t1 |
| chr3.3 | CDS | 80802100 | 80802267 | 80802100 | ID=cds.MS.gene049193.t1;Parent=MS.gene049193.t1 |
| chr3.3 | exon | 80801623 | 80801780 | 80801623 | ID=MS.gene049193.t1.exon12;Parent=MS.gene049193.t1 |
| chr3.3 | CDS | 80801623 | 80801780 | 80801623 | ID=cds.MS.gene049193.t1;Parent=MS.gene049193.t1 |
| Gene Sequence |
| Protein sequence |
