Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06311.t1 | XP_003602708.1 | 91.3 | 127 | 11 | 0 | 2 | 128 | 10 | 136 | 1.40E-56 | 229.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06311.t1 | G7J2P4 | 91.3 | 127 | 11 | 0 | 2 | 128 | 10 | 136 | 1.0e-56 | 229.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049195 | MS.gene06311 | 0.928861 | 1.59E-92 | -1.69E-46 |
| MS.gene053836 | MS.gene06311 | 0.816649 | 4.96E-52 | -1.69E-46 |
| MS.gene054473 | MS.gene06311 | 0.804059 | 2.59E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06311.t1 | MTR_3g098170 | 91.339 | 127 | 11 | 0 | 2 | 128 | 10 | 136 | 3.64e-80 | 234 |
| MS.gene06311.t1 | MTR_3g098170 | 68.085 | 47 | 15 | 0 | 123 | 169 | 64 | 110 | 1.60e-15 | 70.1 |
| MS.gene06311.t1 | MTR_3g098170 | 84.000 | 125 | 18 | 1 | 2 | 124 | 10 | 134 | 9.21e-70 | 207 |
| MS.gene06311.t1 | MTR_3g098170 | 68.085 | 47 | 15 | 0 | 123 | 169 | 64 | 110 | 7.74e-16 | 70.5 |
| MS.gene06311.t1 | MTR_3g098160 | 79.032 | 124 | 26 | 0 | 2 | 125 | 10 | 133 | 4.10e-68 | 204 |
| MS.gene06311.t1 | MTR_3g098160 | 93.617 | 47 | 3 | 0 | 123 | 169 | 64 | 110 | 8.38e-25 | 94.4 |
| MS.gene06311.t1 | MTR_3g098180 | 74.803 | 127 | 29 | 1 | 2 | 125 | 5 | 131 | 2.45e-65 | 197 |
| MS.gene06311.t1 | MTR_3g098180 | 70.213 | 47 | 14 | 0 | 123 | 169 | 62 | 108 | 4.85e-16 | 71.6 |
| MS.gene06311.t1 | MTR_3g098160 | 78.846 | 104 | 22 | 0 | 2 | 105 | 10 | 113 | 8.90e-57 | 174 |
| MS.gene06311.t1 | MTR_3g098160 | 93.617 | 47 | 3 | 0 | 123 | 169 | 64 | 110 | 4.82e-25 | 94.0 |
| MS.gene06311.t1 | MTR_3g098130 | 69.291 | 127 | 36 | 1 | 2 | 125 | 10 | 136 | 2.26e-55 | 172 |
| MS.gene06311.t1 | MTR_3g098130 | 70.213 | 47 | 14 | 0 | 123 | 169 | 67 | 113 | 1.15e-16 | 73.2 |
| MS.gene06311.t1 | MTR_3g098130 | 71.200 | 125 | 33 | 2 | 2 | 123 | 48 | 172 | 6.06e-55 | 172 |
| MS.gene06311.t1 | MTR_3g098130 | 70.213 | 47 | 14 | 0 | 123 | 169 | 105 | 151 | 1.44e-16 | 73.9 |
| MS.gene06311.t1 | MTR_3g098140 | 69.828 | 116 | 30 | 1 | 15 | 125 | 14 | 129 | 9.40e-52 | 162 |
| MS.gene06311.t1 | MTR_3g098140 | 70.588 | 51 | 10 | 1 | 123 | 168 | 55 | 105 | 3.14e-16 | 72.0 |
| MS.gene06311.t1 | MTR_3g098100 | 66.142 | 127 | 38 | 3 | 1 | 123 | 1 | 126 | 3.42e-49 | 156 |
| MS.gene06311.t1 | MTR_3g098120 | 55.705 | 149 | 51 | 3 | 2 | 141 | 51 | 193 | 3.55e-47 | 152 |
| MS.gene06311.t1 | MTR_3g098120 | 63.830 | 47 | 11 | 1 | 123 | 169 | 106 | 146 | 1.23e-11 | 60.5 |
| MS.gene06311.t1 | MTR_5g069640 | 33.058 | 121 | 70 | 3 | 4 | 115 | 6 | 124 | 1.06e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06311.t1 | AT1G04290 | 57.364 | 129 | 50 | 2 | 1 | 125 | 1 | 128 | 1.46e-42 | 139 |
| MS.gene06311.t1 | AT1G04290 | 54.128 | 109 | 45 | 2 | 1 | 105 | 1 | 108 | 1.32e-31 | 110 |
| MS.gene06311.t1 | AT2G29590 | 32.787 | 122 | 71 | 2 | 3 | 115 | 2 | 121 | 1.65e-14 | 67.4 |
Find 50 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAATTTCCTCCCAAGTTTC+TGG | 0.072394 | 3.1:-77853487 | MS.gene06311:CDS |
| TTCATTAATTCGCAGAATTC+AGG | 0.242351 | 3.1:-77850707 | MS.gene06311:intron |
| AGAATCAGTGAAGAGGTATT+TGG | 0.264125 | 3.1:-77853538 | MS.gene06311:CDS |
| TTAATTAACACGCAGAATTC+AGG | 0.290014 | 3.1:-77853306 | MS.gene06311:intron |
| GCTGAATTTCCGTGGAAATC+TGG | 0.357454 | 3.1:-77850617 | MS.gene06311:CDS |
| GCTGGATTTCCGATGGATAC+TGG | 0.400055 | 3.1:-77853216 | MS.gene06311:CDS |
| CATCGTGCGTGGCCTACGAT+TGG | 0.426469 | 3.1:-77853457 | MS.gene06311:CDS |
| GATGAAAGGTTCCAGAAACT+TGG | 0.442003 | 3.1:+77853476 | None:intergenic |
| GCAATTGCAATTCCTGCCGC+TGG | 0.476508 | 3.1:-77853234 | MS.gene06311:CDS |
| CGTAGGCCACGCACGATGAA+AGG | 0.480275 | 3.1:+77853462 | None:intergenic |
| TGAGATCAATATCTCATGCT+TGG | 0.494105 | 3.1:-77850585 | MS.gene06311:CDS |
| CATTGTTACTCTGGTGGATG+TGG | 0.494972 | 3.1:-77853262 | MS.gene06311:CDS |
| TTCCACGGAAATTCAGCTGC+GGG | 0.507895 | 3.1:+77850623 | None:intergenic |
| CGTTGGTGCCATTGTTACTC+TGG | 0.516580 | 3.1:-77853271 | MS.gene06311:CDS |
| ATTGAGAAAACGACACGGCC+AGG | 0.517820 | 3.1:+77853423 | None:intergenic |
| TCCTGCCGCTGGATTTCCGA+TGG | 0.525258 | 3.1:-77853223 | MS.gene06311:CDS |
| CGATTGGATCTCATTGAGCC+TGG | 0.533177 | 3.1:-77853441 | MS.gene06311:CDS |
| CTGGAACCTTTCATCGTGCG+TGG | 0.538244 | 3.1:-77853468 | MS.gene06311:CDS |
| TCCATCGGAAATCCAGCGGC+AGG | 0.540610 | 3.1:+77853222 | None:intergenic |
| CTTTCCTACTCGTAGAACCT+TGG | 0.550825 | 3.1:+77852285 | None:intergenic |
| AAATTCAGCTGCGGGAATTG+CGG | 0.575442 | 3.1:+77850631 | None:intergenic |
| ACTACTCTGGTGGATATCGC+AGG | 0.575831 | 3.1:-77850659 | MS.gene06311:CDS |
| CAAGGTTCTACGAGTAGGAA+AGG | 0.577693 | 3.1:-77852284 | MS.gene06311:CDS |
| TTCCCGCAGCTGAATTTCCG+TGG | 0.577989 | 3.1:-77850625 | MS.gene06311:CDS |
| CGGTGGTGCTATCACTACTC+TGG | 0.582009 | 3.1:-77850672 | MS.gene06311:CDS |
| AGCATGAGACATTGATCTCG+AGG | 0.588082 | 3.1:+77853187 | None:intergenic |
| GGAGATTGAGATTGATACCA+AGG | 0.588778 | 3.1:-77852302 | MS.gene06311:CDS |
| ATGAAAGGTTCCAGAAACTT+GGG | 0.589410 | 3.1:+77853477 | None:intergenic |
| GTTACTCTGGTGGATGTGGT+AGG | 0.592542 | 3.1:-77853258 | MS.gene06311:CDS |
| TGGTGCTATCACTACTCTGG+TGG | 0.598552 | 3.1:-77850669 | MS.gene06311:CDS |
| ACGGAAACTCCAGATTTCCA+CGG | 0.609103 | 3.1:+77850608 | None:intergenic |
| TGGTGCCATTGTTACTCTGG+TGG | 0.609784 | 3.1:-77853268 | MS.gene06311:CDS |
| GCATGAGATATTGATCTCAA+CGG | 0.610899 | 3.1:+77850589 | None:intergenic |
| TGGATTTAGAATCAGTGAAG+AGG | 0.614768 | 3.1:-77853545 | MS.gene06311:CDS |
| CACATCCACCAGAGTAACAA+TGG | 0.615960 | 3.1:+77853263 | None:intergenic |
| AATTCAGGTAAGTACTTGCA+CGG | 0.620247 | 3.1:-77850692 | MS.gene06311:CDS |
| GCATGAGACATTGATCTCGA+GGG | 0.635278 | 3.1:+77853188 | None:intergenic |
| AGGGAAACTCCAGTATCCAT+CGG | 0.635502 | 3.1:+77853207 | None:intergenic |
| GATACCAAGGTTCTACGAGT+AGG | 0.640264 | 3.1:-77852289 | MS.gene06311:CDS |
| GCTCAATGAGATCCAATCGT+AGG | 0.645816 | 3.1:+77853445 | None:intergenic |
| TTTCCACGGAAATTCAGCTG+CGG | 0.654095 | 3.1:+77850622 | None:intergenic |
| AAAGGTTCCAGAAACTTGGG+AGG | 0.690498 | 3.1:+77853480 | None:intergenic |
| AGTATCCATCGGAAATCCAG+CGG | 0.693311 | 3.1:+77853218 | None:intergenic |
| AGAGTACGAACGAGTAAACG+TGG | 0.694717 | 3.1:+77853390 | None:intergenic |
| GGAGAAAAGAGAAACATCAA+CGG | 0.699958 | 3.1:-77853517 | MS.gene06311:CDS |
| TCAGGTAAGCACTTGCACGT+TGG | 0.701973 | 3.1:-77853288 | MS.gene06311:CDS |
| ACTCTGGTGGATATCGCAGG+CGG | 0.704250 | 3.1:-77850656 | MS.gene06311:CDS |
| TGTTCATTGAGAAAACGACA+CGG | 0.782322 | 3.1:+77853418 | None:intergenic |
| TCAGGTAAGTACTTGCACGG+TGG | 0.784220 | 3.1:-77850689 | MS.gene06311:CDS |
| GTACGAACGAGTAAACGTGG+AGG | 0.803457 | 3.1:+77853393 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAACTAATATATCA+TGG | + | chr3.1:77852589-77852608 | None:intergenic | 10.0% |
| !!! | ATAAAAAAAAATAGTCATTT+TGG | + | chr3.1:77852953-77852972 | None:intergenic | 10.0% |
| !! | AAAAGAAAAATTAGTGTTTA+AGG | + | chr3.1:77851289-77851308 | None:intergenic | 15.0% |
| !! | AAAGAAAAATTAGTGTTTAA+GGG | + | chr3.1:77851288-77851307 | None:intergenic | 15.0% |
| !! | AAATGCAATTAATAAAAACT+TGG | - | chr3.1:77853014-77853033 | MS.gene06311:intron | 15.0% |
| !! | ATATTATTTAGAAACGAAAA+AGG | + | chr3.1:77851215-77851234 | None:intergenic | 15.0% |
| !! | CAAATTTAATACAAAAAACA+AGG | + | chr3.1:77851730-77851749 | None:intergenic | 15.0% |
| !! | TATTATTTAGAAACGAAAAA+GGG | + | chr3.1:77851214-77851233 | None:intergenic | 15.0% |
| !!! | AAGTTTTTATTAATTGCATT+TGG | + | chr3.1:77853015-77853034 | None:intergenic | 15.0% |
| !!! | AATGAAAAACCAATTTTAAT+TGG | + | chr3.1:77851051-77851070 | None:intergenic | 15.0% |
| !!! | ATGAAAAACCAATTTTAATT+GGG | + | chr3.1:77851050-77851069 | None:intergenic | 15.0% |
| !!! | ATGACTATTTTTTTTTATCA+AGG | - | chr3.1:77852955-77852974 | MS.gene06311:intron | 15.0% |
| !!! | CATTTGGTTAATATTTTAAA+GGG | + | chr3.1:77852999-77853018 | None:intergenic | 15.0% |
| !!! | GATATTTGTACAATTAATTT+TGG | + | chr3.1:77852287-77852306 | None:intergenic | 15.0% |
| !!! | TGACTATTTTTTTTTATCAA+GGG | - | chr3.1:77852956-77852975 | MS.gene06311:intron | 15.0% |
| !!! | TTTTTGAAGTAAATATATCA+TGG | + | chr3.1:77852557-77852576 | None:intergenic | 15.0% |
| !! | AATACATTCATTTACTATTG+TGG | + | chr3.1:77852666-77852685 | None:intergenic | 20.0% |
| !! | ACAGATGTAAAAAAATTGAA+AGG | + | chr3.1:77851668-77851687 | None:intergenic | 20.0% |
| !! | ATAATTGTCCCAATTAAAAT+TGG | - | chr3.1:77851039-77851058 | MS.gene06311:intron | 20.0% |
| !! | ATTAGATGTTGCAAAAATTT+GGG | + | chr3.1:77853246-77853265 | None:intergenic | 20.0% |
| !! | ATTTAGTCTAGACTAATAAA+GGG | - | chr3.1:77851399-77851418 | MS.gene06311:intron | 20.0% |
| !! | CGTTTCTAAATAATATTCAT+TGG | - | chr3.1:77851219-77851238 | MS.gene06311:intron | 20.0% |
| !! | GCGTGTTAATTAAATAATTA+AGG | + | chr3.1:77850807-77850826 | None:intergenic | 20.0% |
| !! | TATTTAGTCTAGACTAATAA+AGG | - | chr3.1:77851398-77851417 | MS.gene06311:intron | 20.0% |
| !! | TCTTTGTAAACATAGATAAT+TGG | - | chr3.1:77852317-77852336 | MS.gene06311:intron | 20.0% |
| !!! | AAAATAGTCATTTTGGTTAA+TGG | + | chr3.1:77852946-77852965 | None:intergenic | 20.0% |
| !!! | AACAAAATATTTTAACACGA+GGG | + | chr3.1:77852730-77852749 | None:intergenic | 20.0% |
| !!! | ACAACTATTTCTCTTTTTAT+TGG | + | chr3.1:77852252-77852271 | None:intergenic | 20.0% |
| !!! | ATTAGTCTAGACTAAATAAA+TGG | + | chr3.1:77851396-77851415 | None:intergenic | 20.0% |
| !!! | GACTATTTTTTTTTATCAAG+GGG | - | chr3.1:77852957-77852976 | MS.gene06311:intron | 20.0% |
| !!! | GCATTTGGTTAATATTTTAA+AGG | + | chr3.1:77853000-77853019 | None:intergenic | 20.0% |
| !!! | TAACAAAATATTTTAACACG+AGG | + | chr3.1:77852731-77852750 | None:intergenic | 20.0% |
| !!! | TTTTTATTGGACAAAAACAA+TGG | + | chr3.1:77852239-77852258 | None:intergenic | 20.0% |
| !!! | TTTTTTTGTTTAATTCCCTA+TGG | - | chr3.1:77851778-77851797 | MS.gene06311:intron | 20.0% |
| ! | AAGTTTCAATGAATGACTAA+TGG | + | chr3.1:77851549-77851568 | None:intergenic | 25.0% |
| ! | AATAGAATGGAAAAAACAGA+AGG | - | chr3.1:77853144-77853163 | MS.gene06311:intron | 25.0% |
| ! | AATTTGGATGTGCATAATTA+AGG | + | chr3.1:77852705-77852724 | None:intergenic | 25.0% |
| ! | ATGATTAACGATAATACAAG+AGG | + | chr3.1:77851003-77851022 | None:intergenic | 25.0% |
| ! | ATGTATACAAGTAATTGTGA+AGG | - | chr3.1:77851960-77851979 | MS.gene06311:intron | 25.0% |
| ! | CTACATTGTAAAAAAACTGA+AGG | - | chr3.1:77853109-77853128 | MS.gene06311:intron | 25.0% |
| ! | GATATCAAATTGATCATTAG+AGG | - | chr3.1:77851688-77851707 | MS.gene06311:intron | 25.0% |
| ! | GATTAGATGTTGCAAAAATT+TGG | + | chr3.1:77853247-77853266 | None:intergenic | 25.0% |
| ! | TCATAAAAAAGAGTTTGTCT+AGG | + | chr3.1:77851458-77851477 | None:intergenic | 25.0% |
| ! | TCTATGTTTACAAAGATTAG+AGG | + | chr3.1:77852313-77852332 | None:intergenic | 25.0% |
| ! | TGATTAACGATAATACAAGA+GGG | + | chr3.1:77851002-77851021 | None:intergenic | 25.0% |
| ! | TTTCAAAACAATCCTTGATA+AGG | + | chr3.1:77852887-77852906 | None:intergenic | 25.0% |
| !! | AATGTTTTCTATAGGTTCAA+AGG | - | chr3.1:77852036-77852055 | MS.gene06311:intron | 25.0% |
| !! | ATGTTTTCTATAGGTTCAAA+GGG | - | chr3.1:77852037-77852056 | MS.gene06311:intron | 25.0% |
| !! | ATTCACATTTTACTGACAAA+GGG | + | chr3.1:77851942-77851961 | None:intergenic | 25.0% |
| !! | CACTTTTATCTGATTGTTTT+AGG | - | chr3.1:77852432-77852451 | MS.gene06311:intron | 25.0% |
| !! | GCGAATTAATGAATTAGTTT+AGG | + | chr3.1:77853406-77853425 | None:intergenic | 25.0% |
| !!! | AAATAAATGGTCGTTTTCTT+CGG | + | chr3.1:77851383-77851402 | None:intergenic | 25.0% |
| !!! | CTATTGTTTTGTCTAATAAG+TGG | + | chr3.1:77852531-77852550 | None:intergenic | 25.0% |
| AACAAAGTAGTAAAGGATAG+AGG | - | chr3.1:77852359-77852378 | MS.gene06311:intron | 30.0% | |
| AAGTTATCGATGTATCCAAA+AGG | - | chr3.1:77852078-77852097 | MS.gene06311:intron | 30.0% | |
| AATAAAAACTTGGCTTAGCT+TGG | - | chr3.1:77853024-77853043 | MS.gene06311:intron | 30.0% | |
| AGAGTTCAGAAAGAAAAAGA+CGG | - | chr3.1:77851878-77851897 | MS.gene06311:intron | 30.0% | |
| ATTGCGAAACAAAGTAGTAA+AGG | - | chr3.1:77852352-77852371 | MS.gene06311:intron | 30.0% | |
| CCTTGATAAGGTTTGATATA+GGG | + | chr3.1:77852875-77852894 | None:intergenic | 30.0% | |
| GAACCTATAGAAAACATTAC+TGG | + | chr3.1:77852034-77852053 | None:intergenic | 30.0% | |
| GAATTAGCATATGTGCTTAA+TGG | + | chr3.1:77851100-77851119 | None:intergenic | 30.0% | |
| GATTAACGATAATACAAGAG+GGG | + | chr3.1:77851001-77851020 | None:intergenic | 30.0% | |
| GATTATAAAGACCACTTTAC+TGG | + | chr3.1:77853072-77853091 | None:intergenic | 30.0% | |
| GCTAATTGAATATGAGAATG+AGG | - | chr3.1:77851492-77851511 | MS.gene06311:intron | 30.0% | |
| GCTATGAAACAAACTAACAT+TGG | + | chr3.1:77850974-77850993 | None:intergenic | 30.0% | |
| TCCTTGATAAGGTTTGATAT+AGG | + | chr3.1:77852876-77852895 | None:intergenic | 30.0% | |
| TGTAAAAAAACTGAAGGAAG+AGG | - | chr3.1:77853115-77853134 | MS.gene06311:intron | 30.0% | |
| TTAATTAACACGCAGAATTC+AGG | - | chr3.1:77850814-77850833 | MS.gene06311:intron | 30.0% | |
| TTCATTAATTCGCAGAATTC+AGG | - | chr3.1:77853413-77853432 | MS.gene06311:CDS | 30.0% | |
| TTCTCATATTCAATTAGCAG+TGG | + | chr3.1:77851490-77851509 | None:intergenic | 30.0% | |
| ! | ATACATTACTGTTAGCTTAG+TGG | + | chr3.1:77851604-77851623 | None:intergenic | 30.0% |
| ! | CATTCACATTTTACTGACAA+AGG | + | chr3.1:77851943-77851962 | None:intergenic | 30.0% |
| ! | TACATTACTGTTAGCTTAGT+GGG | + | chr3.1:77851603-77851622 | None:intergenic | 30.0% |
| ! | TACTACTTTGTTTCGCAATT+TGG | + | chr3.1:77852351-77852370 | None:intergenic | 30.0% |
| !! | AATAAATGGTCGTTTTCTTC+GGG | + | chr3.1:77851382-77851401 | None:intergenic | 30.0% |
| !! | ATAATATTCATTGGCTTGTC+AGG | - | chr3.1:77851228-77851247 | MS.gene06311:intron | 30.0% |
| !! | TAATATTCATTGGCTTGTCA+GGG | - | chr3.1:77851229-77851248 | MS.gene06311:intron | 30.0% |
| !!! | AGTCATTTTGGTTAATGGAA+CGG | + | chr3.1:77852941-77852960 | None:intergenic | 30.0% |
| AAAAACAGAAGGAACGATAC+CGG | - | chr3.1:77853155-77853174 | MS.gene06311:intron | 35.0% | |
| AAAAACTGAAGGAAGAGGAA+AGG | - | chr3.1:77853120-77853139 | MS.gene06311:intron | 35.0% | |
| AAAAGGACAAAAGATCATCG+AGG | - | chr3.1:77852095-77852114 | MS.gene06311:intron | 35.0% | |
| AAGCAAGAAGAAGAAGATTG+AGG | + | chr3.1:77850756-77850775 | None:intergenic | 35.0% | |
| AAGTGAAGCTATACATAGAG+AGG | - | chr3.1:77851129-77851148 | MS.gene06311:intron | 35.0% | |
| AATTCAGGTAAGTACTTGCA+CGG | - | chr3.1:77853428-77853447 | MS.gene06311:CDS | 35.0% | |
| ACTGACAAAGGGAAGATATT+TGG | + | chr3.1:77851931-77851950 | None:intergenic | 35.0% | |
| AGATGTTGCAAAAATTTGGG+AGG | + | chr3.1:77853243-77853262 | None:intergenic | 35.0% | |
| ATGAAAGGTTCCAGAAACTT+GGG | + | chr3.1:77850646-77850665 | None:intergenic | 35.0% | |
| ATTCCCTATGGCTTATGTAA+TGG | - | chr3.1:77851790-77851809 | MS.gene06311:intron | 35.0% | |
| CCCTATATCAAACCTTATCA+AGG | - | chr3.1:77852872-77852891 | MS.gene06311:intron | 35.0% | |
| CTACCATTACATAAGCCATA+GGG | + | chr3.1:77851796-77851815 | None:intergenic | 35.0% | |
| GAAGAGGAAAGGAAATAGAA+TGG | - | chr3.1:77853131-77853150 | MS.gene06311:intron | 35.0% | |
| GAGTTCAGAAAGAAAAAGAC+GGG | - | chr3.1:77851879-77851898 | MS.gene06311:intron | 35.0% | |
| GCATGAGATATTGATCTCAA+CGG | + | chr3.1:77853534-77853553 | None:intergenic | 35.0% | |
| GGAGAAAAGAGAAACATCAA+CGG | - | chr3.1:77850603-77850622 | MS.gene06311:CDS | 35.0% | |
| GGTGTAGCTACATTAATCTT+TGG | - | chr3.1:77852116-77852135 | MS.gene06311:intron | 35.0% | |
| GTCTTGAAAAAACACCTATC+AGG | + | chr3.1:77851993-77852012 | None:intergenic | 35.0% | |
| TGAGATCAATATCTCATGCT+TGG | - | chr3.1:77853535-77853554 | MS.gene06311:CDS | 35.0% | |
| TGTTCATTGAGAAAACGACA+CGG | + | chr3.1:77850705-77850724 | None:intergenic | 35.0% | |
| ! | AAGACCTTTGGAAATGAACT+TGG | - | chr3.1:77852008-77852027 | MS.gene06311:intron | 35.0% |
| ! | ACATTACTGTTAGCTTAGTG+GGG | + | chr3.1:77851602-77851621 | None:intergenic | 35.0% |
| ! | TCGATGATCTTTTGTCCTTT+TGG | + | chr3.1:77852096-77852115 | None:intergenic | 35.0% |
| ! | TGGATTTAGAATCAGTGAAG+AGG | - | chr3.1:77850575-77850594 | MS.gene06311:CDS | 35.0% |
| ! | TGGCCAGTAATGTTTTCTAT+AGG | - | chr3.1:77852028-77852047 | MS.gene06311:intron | 35.0% |
| ! | TTTTAACACGAGGGACAATT+TGG | + | chr3.1:77852721-77852740 | None:intergenic | 35.0% |
| !! | AGAATCAGTGAAGAGGTATT+TGG | - | chr3.1:77850582-77850601 | MS.gene06311:CDS | 35.0% |
| !! | ATACGCGTCGATTACTATAT+AGG | - | chr3.1:77852494-77852513 | MS.gene06311:intron | 35.0% |
| !! | CTTCTTCTTGCTTTTGATGA+TGG | - | chr3.1:77850763-77850782 | MS.gene06311:intron | 35.0% |
| !! | TTCTTCACTGATTCCAAATC+CGG | + | chr3.1:77853177-77853196 | None:intergenic | 35.0% |
| !!! | AGGTGTTTTTTCAAGACCTT+TGG | - | chr3.1:77851996-77852015 | MS.gene06311:intron | 35.0% |
| !!! | GTCATTTTGGTTAATGGAAC+GGG | + | chr3.1:77852940-77852959 | None:intergenic | 35.0% |
| ACATGTGAGTATGAGAGAGA+GGG | + | chr3.1:77852187-77852206 | None:intergenic | 40.0% | |
| ATGGCTTATGTAATGGTAGG+AGG | - | chr3.1:77851797-77851816 | MS.gene06311:intron | 40.0% | |
| CAGAAACACTGTTCTGTCAA+CGG | - | chr3.1:77852391-77852410 | MS.gene06311:intron | 40.0% | |
| CCTACCATTACATAAGCCAT+AGG | + | chr3.1:77851797-77851816 | None:intergenic | 40.0% | |
| CCTATGGCTTATGTAATGGT+AGG | - | chr3.1:77851794-77851813 | MS.gene06311:intron | 40.0% | |
| GATGAAAGGTTCCAGAAACT+TGG | + | chr3.1:77850647-77850666 | None:intergenic | 40.0% | |
| GGAGAAAAGACTAGCATCAA+CGG | - | chr3.1:77853203-77853222 | MS.gene06311:CDS | 40.0% | |
| GGAGATTGAGATTGATACCA+AGG | - | chr3.1:77851818-77851837 | MS.gene06311:intron | 40.0% | |
| ! | AACTTGGCTTAGCTTGGATT+TGG | - | chr3.1:77853030-77853049 | MS.gene06311:intron | 40.0% |
| !! | GGAATCAGTGAAGAAGTACT+TGG | - | chr3.1:77853182-77853201 | MS.gene06311:CDS | 40.0% |
| AAAGGGTGAGTGATGGCAAT+TGG | - | chr3.1:77852054-77852073 | MS.gene06311:intron | 45.0% | |
| AAAGGTTCCAGAAACTTGGG+AGG | + | chr3.1:77850643-77850662 | None:intergenic | 45.0% | |
| AAATTCAGCTGCGGGAATTG+CGG | + | chr3.1:77853492-77853511 | None:intergenic | 45.0% | |
| ACGGAAACTCCAGATTTCCA+CGG | + | chr3.1:77853515-77853534 | None:intergenic | 45.0% | |
| AGAAGGAACGATACCGGATT+TGG | - | chr3.1:77853161-77853180 | MS.gene06311:intron | 45.0% | |
| AGAGTACGAACGAGTAAACG+TGG | + | chr3.1:77850733-77850752 | None:intergenic | 45.0% | |
| AGCATGAGACATTGATCTCG+AGG | + | chr3.1:77850936-77850955 | None:intergenic | 45.0% | |
| AGGGAAACTCCAGTATCCAT+CGG | + | chr3.1:77850916-77850935 | None:intergenic | 45.0% | |
| AGTACGAACGAGTAAACGTG+GGG | + | chr3.1:77850731-77850750 | None:intergenic | 45.0% | |
| AGTATCCATCGGAAATCCAG+CGG | + | chr3.1:77850905-77850924 | None:intergenic | 45.0% | |
| ATTGAGAAGATGACACGACC+AGG | + | chr3.1:77853293-77853312 | None:intergenic | 45.0% | |
| CAAGGTTCTACGAGTAGGAA+AGG | - | chr3.1:77851836-77851855 | MS.gene06311:intron | 45.0% | |
| CACATCCACCAGAGTAACAA+TGG | + | chr3.1:77850860-77850879 | None:intergenic | 45.0% | |
| CACATGTGAGTATGAGAGAG+AGG | + | chr3.1:77852188-77852207 | None:intergenic | 45.0% | |
| CGAATTTCCTCCCAAGTTTC+TGG | - | chr3.1:77850633-77850652 | MS.gene06311:CDS | 45.0% | |
| CTGGCCAAGTTCATTTCCAA+AGG | + | chr3.1:77852015-77852034 | None:intergenic | 45.0% | |
| CTTTCCTACTCGTAGAACCT+TGG | + | chr3.1:77851838-77851857 | None:intergenic | 45.0% | |
| GACGCCCTTGAGCAAAAATT+TGG | + | chr3.1:77851905-77851924 | None:intergenic | 45.0% | |
| GAGTACGAACGAGTAAACGT+GGG | + | chr3.1:77850732-77850751 | None:intergenic | 45.0% | |
| GATACCAAGGTTCTACGAGT+AGG | - | chr3.1:77851831-77851850 | MS.gene06311:intron | 45.0% | |
| GCATGAGACATTGATCTCGA+GGG | + | chr3.1:77850935-77850954 | None:intergenic | 45.0% | |
| GCTCAATGAGATCCAATCGT+AGG | + | chr3.1:77850678-77850697 | None:intergenic | 45.0% | |
| GCTGAATTTCCGTGGAAATC+TGG | - | chr3.1:77853503-77853522 | MS.gene06311:CDS | 45.0% | |
| GTGAAGGAAGCAAACCTGAT+AGG | - | chr3.1:77851976-77851995 | MS.gene06311:intron | 45.0% | |
| TAGGTTCAAAGGGTGAGTGA+TGG | - | chr3.1:77852047-77852066 | MS.gene06311:intron | 45.0% | |
| TTTCCACGGAAATTCAGCTG+CGG | + | chr3.1:77853501-77853520 | None:intergenic | 45.0% | |
| ! | ACGGGCCAAATTTTTGCTCA+AGG | - | chr3.1:77851897-77851916 | MS.gene06311:intron | 45.0% |
| ! | CATTGTTACTCTGGTGGATG+TGG | - | chr3.1:77850858-77850877 | MS.gene06311:intron | 45.0% |
| ! | CGGGCCAAATTTTTGCTCAA+GGG | - | chr3.1:77851898-77851917 | MS.gene06311:intron | 45.0% |
| ATTGAGAAAACGACACGGCC+AGG | + | chr3.1:77850700-77850719 | None:intergenic | 50.0% | |
| CGATTGGATCTCATTGAGCC+TGG | - | chr3.1:77850679-77850698 | MS.gene06311:CDS | 50.0% | |
| GATTTGGCATCTTCACGCGA+GGG | - | chr3.1:77853046-77853065 | MS.gene06311:intron | 50.0% | |
| GCTGGATTTCCGATGGATAC+TGG | - | chr3.1:77850904-77850923 | MS.gene06311:intron | 50.0% | |
| GTACGAACGAGTAAACGTGG+AGG | + | chr3.1:77850730-77850749 | None:intergenic | 50.0% | |
| GTACGAACGAGTAAACGTGG+GGG | + | chr3.1:77850730-77850749 | None:intergenic | 50.0% | |
| TCAGGTAAGCACTTGCACGT+TGG | - | chr3.1:77850832-77850851 | MS.gene06311:intron | 50.0% | |
| TCAGGTAAGTACTTGCACGG+TGG | - | chr3.1:77853431-77853450 | MS.gene06311:CDS | 50.0% | |
| TTCCACGGAAATTCAGCTGC+GGG | + | chr3.1:77853500-77853519 | None:intergenic | 50.0% | |
| ! | ACTACTCTGGTGGATATCGC+AGG | - | chr3.1:77853461-77853480 | MS.gene06311:CDS | 50.0% |
| ! | GTTACTCTGGTGGATGTGGT+AGG | - | chr3.1:77850862-77850881 | MS.gene06311:intron | 50.0% |
| !! | CATTGGCTTGTCAGGGTGAT+TGG | - | chr3.1:77851236-77851255 | MS.gene06311:intron | 50.0% |
| !! | CGTTGGTGCCATTGTTACTC+TGG | - | chr3.1:77850849-77850868 | MS.gene06311:intron | 50.0% |
| !! | TGGTGCCATTGTTACTCTGG+TGG | - | chr3.1:77850852-77850871 | MS.gene06311:intron | 50.0% |
| !! | TGGTGCTATCACTACTCTGG+TGG | - | chr3.1:77853451-77853470 | MS.gene06311:CDS | 50.0% |
| AATCTTACGCGCCCTGCGAT+TGG | - | chr3.1:77853263-77853282 | MS.gene06311:CDS | 55.0% | |
| CTGGAACCTTTCATCGTGCG+TGG | - | chr3.1:77850652-77850671 | MS.gene06311:CDS | 55.0% | |
| GACCAGGAGATCCAATCGCA+GGG | + | chr3.1:77853277-77853296 | None:intergenic | 55.0% | |
| GCAATTGCAATTCCTGCCGC+TGG | - | chr3.1:77850886-77850905 | MS.gene06311:intron | 55.0% | |
| GGATTTGGCATCTTCACGCG+AGG | - | chr3.1:77853045-77853064 | MS.gene06311:intron | 55.0% | |
| TTCCCGCAGCTGAATTTCCG+TGG | - | chr3.1:77853495-77853514 | MS.gene06311:CDS | 55.0% | |
| ! | ACTCTGGTGGATATCGCAGG+CGG | - | chr3.1:77853464-77853483 | MS.gene06311:CDS | 55.0% |
| !! | CGGTGGTGCTATCACTACTC+TGG | - | chr3.1:77853448-77853467 | MS.gene06311:CDS | 55.0% |
| CATCGTGCGTGGCCTACGAT+TGG | - | chr3.1:77850663-77850682 | MS.gene06311:CDS | 60.0% | |
| CGACCAGGAGATCCAATCGC+AGG | + | chr3.1:77853278-77853297 | None:intergenic | 60.0% | |
| CGTAGGCCACGCACGATGAA+AGG | + | chr3.1:77850661-77850680 | None:intergenic | 60.0% | |
| TCACGCGAGGGCCAGTAAAG+TGG | - | chr3.1:77853058-77853077 | MS.gene06311:intron | 60.0% | |
| TCCATCGGAAATCCAGCGGC+AGG | + | chr3.1:77850901-77850920 | None:intergenic | 60.0% | |
| TCCTGCCGCTGGATTTCCGA+TGG | - | chr3.1:77850897-77850916 | MS.gene06311:intron | 60.0% | |
| CGCCCTGCGATTGGATCTCC+TGG | - | chr3.1:77853272-77853291 | MS.gene06311:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 77850574 | 77853568 | 77850574 | ID=MS.gene06311 |
| chr3.1 | mRNA | 77850574 | 77853568 | 77850574 | ID=MS.gene06311.t1;Parent=MS.gene06311 |
| chr3.1 | exon | 77853401 | 77853568 | 77853401 | ID=MS.gene06311.t1.exon1;Parent=MS.gene06311.t1 |
| chr3.1 | CDS | 77853401 | 77853568 | 77853401 | ID=cds.MS.gene06311.t1;Parent=MS.gene06311.t1 |
| chr3.1 | exon | 77853167 | 77853313 | 77853167 | ID=MS.gene06311.t1.exon2;Parent=MS.gene06311.t1 |
| chr3.1 | CDS | 77853167 | 77853313 | 77853167 | ID=cds.MS.gene06311.t1;Parent=MS.gene06311.t1 |
| chr3.1 | exon | 77852273 | 77852326 | 77852273 | ID=MS.gene06311.t1.exon3;Parent=MS.gene06311.t1 |
| chr3.1 | CDS | 77852273 | 77852326 | 77852273 | ID=cds.MS.gene06311.t1;Parent=MS.gene06311.t1 |
| chr3.1 | exon | 77850574 | 77850714 | 77850574 | ID=MS.gene06311.t1.exon4;Parent=MS.gene06311.t1 |
| chr3.1 | CDS | 77850574 | 77850714 | 77850574 | ID=cds.MS.gene06311.t1;Parent=MS.gene06311.t1 |
| Gene Sequence |
| Protein sequence |
