Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049195.t1 | XP_003602708.1 | 96 | 151 | 6 | 0 | 2 | 152 | 10 | 160 | 3.10E-74 | 287.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049195.t1 | Q9NPJ3 | 38.3 | 107 | 61 | 2 | 42 | 146 | 35 | 138 | 4.2e-11 | 69.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049195.t1 | G7J2P4 | 96.0 | 151 | 6 | 0 | 2 | 152 | 10 | 160 | 2.2e-74 | 287.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049195 | MS.gene050787 | 0.8227 | 2.06E-53 | -1.69E-46 |
| MS.gene049195 | MS.gene051860 | 0.801054 | 1.08E-48 | -1.69E-46 |
| MS.gene049195 | MS.gene053054 | -0.801571 | 8.46E-49 | -1.69E-46 |
| MS.gene049195 | MS.gene053836 | 0.831094 | 2.03E-55 | -1.69E-46 |
| MS.gene049195 | MS.gene054473 | 0.83345 | 5.30E-56 | -1.69E-46 |
| MS.gene049195 | MS.gene054983 | 0.80059 | 1.34E-48 | -1.69E-46 |
| MS.gene049195 | MS.gene055358 | 0.802818 | 4.68E-49 | -1.69E-46 |
| MS.gene049195 | MS.gene05886 | 0.809358 | 1.97E-50 | -1.69E-46 |
| MS.gene049195 | MS.gene061114 | -0.827049 | 1.94E-54 | -1.69E-46 |
| MS.gene049195 | MS.gene061333 | 0.800331 | 1.52E-48 | -1.69E-46 |
| MS.gene049195 | MS.gene061334 | 0.811157 | 8.06E-51 | -1.69E-46 |
| MS.gene049195 | MS.gene06311 | 0.928861 | 1.59E-92 | -1.69E-46 |
| MS.gene049195 | MS.gene063426 | 0.809403 | 1.92E-50 | -1.69E-46 |
| MS.gene049195 | MS.gene064048 | 0.814608 | 1.41E-51 | -1.69E-46 |
| MS.gene049195 | MS.gene064621 | 0.800323 | 1.52E-48 | -1.69E-46 |
| MS.gene049195 | MS.gene065905 | 0.803809 | 2.92E-49 | -1.69E-46 |
| MS.gene049195 | MS.gene067594 | 0.805847 | 1.10E-49 | -1.69E-46 |
| MS.gene049195 | MS.gene067596 | 0.806687 | 7.29E-50 | -1.69E-46 |
| MS.gene049195 | MS.gene067597 | 0.800458 | 1.43E-48 | -1.69E-46 |
| MS.gene049195 | MS.gene067599 | 0.806429 | 8.26E-50 | -1.69E-46 |
| MS.gene049195 | MS.gene068612 | 0.816151 | 6.41E-52 | -1.69E-46 |
| MS.gene049195 | MS.gene069689 | -0.81453 | 1.47E-51 | -1.69E-46 |
| MS.gene049195 | MS.gene069868 | -0.814509 | 1.49E-51 | -1.69E-46 |
| MS.gene049195 | MS.gene070879 | 0.809109 | 2.23E-50 | -1.69E-46 |
| MS.gene049195 | MS.gene071062 | 0.809394 | 1.93E-50 | -1.69E-46 |
| MS.gene049195 | MS.gene07115 | 0.852566 | 4.24E-61 | -1.69E-46 |
| MS.gene049195 | MS.gene071438 | -0.8049 | 1.73E-49 | -1.69E-46 |
| MS.gene049195 | MS.gene071693 | -0.830252 | 3.26E-55 | -1.69E-46 |
| MS.gene049195 | MS.gene072584 | 0.833964 | 3.94E-56 | -1.69E-46 |
| MS.gene049195 | MS.gene073438 | 0.81631 | 5.91E-52 | -1.69E-46 |
| MS.gene049195 | MS.gene073723 | 0.823405 | 1.41E-53 | -1.69E-46 |
| MS.gene049195 | MS.gene08324 | -0.824249 | 8.94E-54 | -1.69E-46 |
| MS.gene049195 | MS.gene09136 | 0.810601 | 1.06E-50 | -1.69E-46 |
| MS.gene049195 | MS.gene20072 | -0.835308 | 1.81E-56 | -1.69E-46 |
| MS.gene049195 | MS.gene20612 | 0.802892 | 4.52E-49 | -1.69E-46 |
| MS.gene049195 | MS.gene21597 | -0.853418 | 2.42E-61 | -1.69E-46 |
| MS.gene049195 | MS.gene22251 | 0.825061 | 5.76E-54 | -1.69E-46 |
| MS.gene049195 | MS.gene22424 | -0.832917 | 7.19E-56 | -1.69E-46 |
| MS.gene049195 | MS.gene23009 | 0.800738 | 1.25E-48 | -1.69E-46 |
| MS.gene049195 | MS.gene24247 | 0.840036 | 1.11E-57 | -1.69E-46 |
| MS.gene049195 | MS.gene27938 | 0.841539 | 4.47E-58 | -1.69E-46 |
| MS.gene049195 | MS.gene28224 | 0.800881 | 1.17E-48 | -1.69E-46 |
| MS.gene049195 | MS.gene28311 | 0.818205 | 2.21E-52 | -1.69E-46 |
| MS.gene049195 | MS.gene34936 | -0.823721 | 1.19E-53 | -1.69E-46 |
| MS.gene049195 | MS.gene34981 | -0.810486 | 1.13E-50 | -1.69E-46 |
| MS.gene049195 | MS.gene35394 | -0.838311 | 3.10E-57 | -1.69E-46 |
| MS.gene049195 | MS.gene37213 | 0.837799 | 4.20E-57 | -1.69E-46 |
| MS.gene049195 | MS.gene43053 | -0.850966 | 1.21E-60 | -1.69E-46 |
| MS.gene049195 | MS.gene44474 | -0.821963 | 3.05E-53 | -1.69E-46 |
| MS.gene049195 | MS.gene44841 | -0.81795 | 2.53E-52 | -1.69E-46 |
| MS.gene049195 | MS.gene45735 | 0.820621 | 6.23E-53 | -1.69E-46 |
| MS.gene049195 | MS.gene46989 | 0.816082 | 6.64E-52 | -1.69E-46 |
| MS.gene049195 | MS.gene47896 | 0.829188 | 5.92E-55 | -1.69E-46 |
| MS.gene049195 | MS.gene48442 | -0.826041 | 3.37E-54 | -1.69E-46 |
| MS.gene049195 | MS.gene50644 | 0.807366 | 5.23E-50 | -1.69E-46 |
| MS.gene049195 | MS.gene51471 | -0.807755 | 4.33E-50 | -1.69E-46 |
| MS.gene049195 | MS.gene52059 | 0.814009 | 1.92E-51 | -1.69E-46 |
| MS.gene049195 | MS.gene53875 | -0.830172 | 3.41E-55 | -1.69E-46 |
| MS.gene049195 | MS.gene54446 | -0.805332 | 1.40E-49 | -1.69E-46 |
| MS.gene049195 | MS.gene54700 | 0.805119 | 1.56E-49 | -1.69E-46 |
| MS.gene049195 | MS.gene56484 | 0.808528 | 2.96E-50 | -1.69E-46 |
| MS.gene049195 | MS.gene57944 | -0.807549 | 4.79E-50 | -1.69E-46 |
| MS.gene049195 | MS.gene59010 | 0.809402 | 1.93E-50 | -1.69E-46 |
| MS.gene049195 | MS.gene59608 | 0.804799 | 1.82E-49 | -1.69E-46 |
| MS.gene049195 | MS.gene59730 | 0.82172 | 3.48E-53 | -1.69E-46 |
| MS.gene049195 | MS.gene61547 | -0.837512 | 4.97E-57 | -1.69E-46 |
| MS.gene049195 | MS.gene62154 | 0.805916 | 1.06E-49 | -1.69E-46 |
| MS.gene049195 | MS.gene62813 | 0.814583 | 1.43E-51 | -1.69E-46 |
| MS.gene049195 | MS.gene63288 | 0.802984 | 4.33E-49 | -1.69E-46 |
| MS.gene049195 | MS.gene63507 | 0.828043 | 1.12E-54 | -1.69E-46 |
| MS.gene049195 | MS.gene64621 | 0.835207 | 1.92E-56 | -1.69E-46 |
| MS.gene049195 | MS.gene65106 | 0.804729 | 1.88E-49 | -1.69E-46 |
| MS.gene049195 | MS.gene65665 | 0.839305 | 1.72E-57 | -1.69E-46 |
| MS.gene049195 | MS.gene66969 | 0.811623 | 6.38E-51 | -1.69E-46 |
| MS.gene049195 | MS.gene67226 | 0.841623 | 4.25E-58 | -1.69E-46 |
| MS.gene049195 | MS.gene67786 | -0.812343 | 4.45E-51 | -1.69E-46 |
| MS.gene049195 | MS.gene68168 | 0.818827 | 1.60E-52 | -1.69E-46 |
| MS.gene049195 | MS.gene68764 | 0.816301 | 5.94E-52 | -1.69E-46 |
| MS.gene049195 | MS.gene69238 | 0.804501 | 2.10E-49 | -1.69E-46 |
| MS.gene049195 | MS.gene70897 | 0.812495 | 4.12E-51 | -1.69E-46 |
| MS.gene049195 | MS.gene70899 | 0.818235 | 2.18E-52 | -1.69E-46 |
| MS.gene049195 | MS.gene74030 | -0.81272 | 3.68E-51 | -1.69E-46 |
| MS.gene049195 | MS.gene74031 | -0.814265 | 1.68E-51 | -1.69E-46 |
| MS.gene049195 | MS.gene75069 | 0.806173 | 9.36E-50 | -1.69E-46 |
| MS.gene049195 | MS.gene75619 | -0.802181 | 6.34E-49 | -1.69E-46 |
| MS.gene049195 | MS.gene75621 | -0.832685 | 8.21E-56 | -1.69E-46 |
| MS.gene049195 | MS.gene76533 | -0.820756 | 5.80E-53 | -1.69E-46 |
| MS.gene049195 | MS.gene76773 | -0.813537 | 2.43E-51 | -1.69E-46 |
| MS.gene049195 | MS.gene77584 | -0.843255 | 1.57E-58 | -1.69E-46 |
| MS.gene049195 | MS.gene78252 | -0.805952 | 1.04E-49 | -1.69E-46 |
| MS.gene049195 | MS.gene79290 | 0.821563 | 3.78E-53 | -1.69E-46 |
| MS.gene049195 | MS.gene80140 | 0.804938 | 1.70E-49 | -1.69E-46 |
| MS.gene049195 | MS.gene82364 | 0.80698 | 6.32E-50 | -1.69E-46 |
| MS.gene049195 | MS.gene82769 | 0.802465 | 5.54E-49 | -1.69E-46 |
| MS.gene049195 | MS.gene83831 | 0.846415 | 2.20E-59 | -1.69E-46 |
| MS.gene049195 | MS.gene84404 | 0.816374 | 5.71E-52 | -1.69E-46 |
| MS.gene049195 | MS.gene85149 | -0.809275 | 2.05E-50 | -1.69E-46 |
| MS.gene049195 | MS.gene88672 | -0.818296 | 2.11E-52 | -1.69E-46 |
| MS.gene049195 | MS.gene90704 | 0.800651 | 1.30E-48 | -1.69E-46 |
| MS.gene049195 | MS.gene91150 | 0.803652 | 3.15E-49 | -1.69E-46 |
| MS.gene049195 | MS.gene91159 | 0.813579 | 2.38E-51 | -1.69E-46 |
| MS.gene049195 | MS.gene92051 | 0.810413 | 1.17E-50 | -1.69E-46 |
| MS.gene049195 | MS.gene92548 | 0.805499 | 1.30E-49 | -1.69E-46 |
| MS.gene049195 | MS.gene93500 | 0.819633 | 1.05E-52 | -1.69E-46 |
| MS.gene049195 | MS.gene93665 | 0.802481 | 5.50E-49 | -1.69E-46 |
| MS.gene049195 | MS.gene93892 | 0.816814 | 4.55E-52 | -1.69E-46 |
| MS.gene049195 | MS.gene94818 | -0.813637 | 2.31E-51 | -1.69E-46 |
| MS.gene049195 | MS.gene97883 | -0.813179 | 2.92E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049195.t1 | MTR_3g098170 | 96.026 | 151 | 6 | 0 | 2 | 152 | 10 | 160 | 1.39e-104 | 296 |
| MS.gene049195.t1 | MTR_3g098160 | 76.923 | 156 | 31 | 1 | 2 | 152 | 10 | 165 | 7.03e-86 | 248 |
| MS.gene049195.t1 | MTR_3g098180 | 76.623 | 154 | 33 | 1 | 2 | 152 | 5 | 158 | 3.66e-84 | 244 |
| MS.gene049195.t1 | MTR_3g098130 | 72.727 | 154 | 39 | 1 | 2 | 152 | 10 | 163 | 7.30e-79 | 231 |
| MS.gene049195.t1 | MTR_3g098130 | 72.727 | 154 | 39 | 1 | 2 | 152 | 48 | 201 | 1.94e-78 | 231 |
| MS.gene049195.t1 | MTR_3g098140 | 74.126 | 143 | 32 | 1 | 15 | 152 | 14 | 156 | 2.17e-74 | 219 |
| MS.gene049195.t1 | MTR_3g098100 | 68.590 | 156 | 44 | 3 | 1 | 152 | 1 | 155 | 2.68e-70 | 209 |
| MS.gene049195.t1 | MTR_3g098170 | 93.458 | 107 | 7 | 0 | 2 | 108 | 10 | 116 | 1.15e-69 | 206 |
| MS.gene049195.t1 | MTR_3g098120 | 66.225 | 151 | 44 | 2 | 3 | 152 | 52 | 196 | 7.43e-66 | 199 |
| MS.gene049195.t1 | MTR_3g098160 | 78.846 | 104 | 22 | 0 | 2 | 105 | 10 | 113 | 1.67e-57 | 176 |
| MS.gene049195.t1 | MTR_5g069640 | 32.278 | 158 | 96 | 3 | 4 | 152 | 6 | 161 | 1.34e-21 | 85.5 |
| MS.gene049195.t1 | MTR_8g032450 | 30.469 | 128 | 87 | 2 | 26 | 152 | 61 | 187 | 5.67e-11 | 58.2 |
| MS.gene049195.t1 | MTR_8g433000 | 30.469 | 128 | 87 | 2 | 26 | 152 | 61 | 187 | 5.67e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049195.t1 | AT1G04290 | 60.667 | 150 | 54 | 2 | 1 | 146 | 1 | 149 | 1.75e-57 | 176 |
| MS.gene049195.t1 | AT1G04290 | 54.128 | 109 | 45 | 2 | 1 | 105 | 1 | 108 | 5.44e-32 | 111 |
| MS.gene049195.t1 | AT2G29590 | 34.161 | 161 | 91 | 4 | 3 | 152 | 2 | 158 | 4.07e-21 | 84.3 |
Find 35 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAATTTCCTCCCAAGTTTC+TGG | 0.072394 | 3.3:-80785172 | MS.gene049195:CDS |
| ACTGACAAAGGGAAGATATT+TGG | 0.225921 | 3.3:+80783877 | None:intergenic |
| AGAATCAGTGAAGAGGTATT+TGG | 0.264125 | 3.3:-80785223 | MS.gene049195:CDS |
| TTAATTAACACGCAGAATTC+AGG | 0.290014 | 3.3:-80784991 | MS.gene049195:intron |
| GCTGGATTTCCGATGGATAC+TGG | 0.400055 | 3.3:-80784901 | MS.gene049195:CDS |
| CATCGTGCGTGGCCTACGAT+TGG | 0.426469 | 3.3:-80785142 | MS.gene049195:CDS |
| GATGAAAGGTTCCAGAAACT+TGG | 0.442003 | 3.3:+80785161 | None:intergenic |
| GCAATTGCAATTCCTGCCGC+TGG | 0.476508 | 3.3:-80784919 | MS.gene049195:CDS |
| CGTAGGCCACGCACGATGAA+AGG | 0.480275 | 3.3:+80785147 | None:intergenic |
| CATTGTTACTCTGGTGGATG+TGG | 0.494972 | 3.3:-80784947 | MS.gene049195:CDS |
| CGTTGGTGCCATTGTTACTC+TGG | 0.516580 | 3.3:-80784956 | MS.gene049195:CDS |
| ATTGAGAAAACGACACGGCC+AGG | 0.517820 | 3.3:+80785108 | None:intergenic |
| TCCTGCCGCTGGATTTCCGA+TGG | 0.525258 | 3.3:-80784908 | MS.gene049195:CDS |
| CGATTGGATCTCATTGAGCC+TGG | 0.533177 | 3.3:-80785126 | MS.gene049195:CDS |
| CTGGAACCTTTCATCGTGCG+TGG | 0.538244 | 3.3:-80785153 | MS.gene049195:CDS |
| TCCATCGGAAATCCAGCGGC+AGG | 0.540610 | 3.3:+80784907 | None:intergenic |
| CAAGGTTCTACGAGTAGGAA+AGG | 0.557518 | 3.3:-80783969 | MS.gene049195:CDS |
| AGCATGAGACATTGATCTCG+AGG | 0.588082 | 3.3:+80784872 | None:intergenic |
| ATGAAAGGTTCCAGAAACTT+GGG | 0.589410 | 3.3:+80785162 | None:intergenic |
| GGAGATTGAGATTGATAACA+AGG | 0.592158 | 3.3:-80783987 | MS.gene049195:CDS |
| GTTACTCTGGTGGATGTGGT+AGG | 0.592542 | 3.3:-80784943 | MS.gene049195:CDS |
| TGGTGCCATTGTTACTCTGG+TGG | 0.609784 | 3.3:-80784953 | MS.gene049195:CDS |
| TGGATTTAGAATCAGTGAAG+AGG | 0.614768 | 3.3:-80785230 | MS.gene049195:CDS |
| CACATCCACCAGAGTAACAA+TGG | 0.615960 | 3.3:+80784948 | None:intergenic |
| GATAACAAGGTTCTACGAGT+AGG | 0.624009 | 3.3:-80783974 | MS.gene049195:CDS |
| GCATGAGACATTGATCTCGA+GGG | 0.635278 | 3.3:+80784873 | None:intergenic |
| AGGGAAACTCCAGTATCCAT+CGG | 0.635502 | 3.3:+80784892 | None:intergenic |
| GCTCAATGAGATCCAATCGT+AGG | 0.645816 | 3.3:+80785130 | None:intergenic |
| AAAGGTTCCAGAAACTTGGG+AGG | 0.690498 | 3.3:+80785165 | None:intergenic |
| AGTATCCATCGGAAATCCAG+CGG | 0.693311 | 3.3:+80784903 | None:intergenic |
| AGAGTACGAACGAGTAAACG+TGG | 0.694717 | 3.3:+80785075 | None:intergenic |
| GGAGAAAAGAGAAACATCAA+CGG | 0.699958 | 3.3:-80785202 | MS.gene049195:CDS |
| TCAGGTAAGCACTTGCACGT+TGG | 0.701973 | 3.3:-80784973 | MS.gene049195:CDS |
| TGTTCATTGAGAAAACGACA+CGG | 0.782322 | 3.3:+80785103 | None:intergenic |
| GTACGAACGAGTAAACGTGG+AGG | 0.803457 | 3.3:+80785078 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAAAAATTAGTGTTTA+AGG | + | chr3.3:80784583-80784602 | None:intergenic | 15.0% |
| !! | AAAGAAAAATTAGTGTTTAA+GGG | + | chr3.3:80784582-80784601 | None:intergenic | 15.0% |
| !! | ATATTATTTAGAAACGAAAA+AGG | + | chr3.3:80784509-80784528 | None:intergenic | 15.0% |
| !! | CAAATTTAATACAAAAAACA+AGG | + | chr3.3:80785024-80785043 | None:intergenic | 15.0% |
| !! | TATTATTTAGAAACGAAAAA+GGG | + | chr3.3:80784508-80784527 | None:intergenic | 15.0% |
| !!! | AATGAAAAACCAATTTTAAT+TGG | + | chr3.3:80784345-80784364 | None:intergenic | 15.0% |
| !!! | ATGAAAAACCAATTTTAATT+GGG | + | chr3.3:80784344-80784363 | None:intergenic | 15.0% |
| !! | ACAGATGTAAAAAAATTGAA+AGG | + | chr3.3:80784962-80784981 | None:intergenic | 20.0% |
| !! | ATAATTGTCCCAATTAAAAT+TGG | - | chr3.3:80784333-80784352 | MS.gene049195:intron | 20.0% |
| !! | ATTTAGTCTAGACTAATAAA+GGG | - | chr3.3:80784693-80784712 | MS.gene049195:intron | 20.0% |
| !! | CGTTTCTAAATAATATTCAT+TGG | - | chr3.3:80784513-80784532 | MS.gene049195:intron | 20.0% |
| !! | GCGTGTTAATTAAATAATTA+AGG | + | chr3.3:80784101-80784120 | None:intergenic | 20.0% |
| !! | TATTTAGTCTAGACTAATAA+AGG | - | chr3.3:80784692-80784711 | MS.gene049195:intron | 20.0% |
| !!! | ATTAGTCTAGACTAAATAAA+TGG | + | chr3.3:80784690-80784709 | None:intergenic | 20.0% |
| !!! | TTTTTTTGTTTAATTCCCTA+TGG | - | chr3.3:80785072-80785091 | MS.gene049195:intron | 20.0% |
| ! | AAGTTTCAATGAATGACTAA+TGG | + | chr3.3:80784843-80784862 | None:intergenic | 25.0% |
| ! | ATCATAAAAAAGAGTTTGTC+TGG | + | chr3.3:80784753-80784772 | None:intergenic | 25.0% |
| ! | ATGATTAACGATAATACAAG+AGG | + | chr3.3:80784297-80784316 | None:intergenic | 25.0% |
| ! | GATATCAAATTGATCATTAG+AGG | - | chr3.3:80784982-80785001 | MS.gene049195:intron | 25.0% |
| ! | TCATAAAAAAGAGTTTGTCT+GGG | + | chr3.3:80784752-80784771 | None:intergenic | 25.0% |
| ! | TGATTAACGATAATACAAGA+GGG | + | chr3.3:80784296-80784315 | None:intergenic | 25.0% |
| !!! | AAATAAATGGTCGTTTTCTT+CGG | + | chr3.3:80784677-80784696 | None:intergenic | 25.0% |
| AGAGTTCAGAAAGAAAAAGA+CGG | - | chr3.3:80785172-80785191 | MS.gene049195:CDS | 30.0% | |
| GAATTAGCATATGTGCTTAA+TGG | + | chr3.3:80784394-80784413 | None:intergenic | 30.0% | |
| GATTAACGATAATACAAGAG+GGG | + | chr3.3:80784295-80784314 | None:intergenic | 30.0% | |
| GCTAATTGAATATGAGAATG+AGG | - | chr3.3:80784786-80784805 | MS.gene049195:intron | 30.0% | |
| GCTATGAAACAAACTAACAT+TGG | + | chr3.3:80784268-80784287 | None:intergenic | 30.0% | |
| TTAATTAACACGCAGAATTC+AGG | - | chr3.3:80784108-80784127 | MS.gene049195:intron | 30.0% | |
| TTCTCATATTCAATTAGCAG+TGG | + | chr3.3:80784784-80784803 | None:intergenic | 30.0% | |
| ! | ATACATTACTGTTAGCTTAG+TGG | + | chr3.3:80784898-80784917 | None:intergenic | 30.0% |
| ! | TACATTACTGTTAGCTTAGT+GGG | + | chr3.3:80784897-80784916 | None:intergenic | 30.0% |
| !! | AATAAATGGTCGTTTTCTTC+GGG | + | chr3.3:80784676-80784695 | None:intergenic | 30.0% |
| !! | ATAATATTCATTGGCTTGTC+AGG | - | chr3.3:80784522-80784541 | MS.gene049195:intron | 30.0% |
| !! | TAATATTCATTGGCTTGTCA+GGG | - | chr3.3:80784523-80784542 | MS.gene049195:intron | 30.0% |
| AAGCAAGAAGAAGAAGATTG+AGG | + | chr3.3:80784050-80784069 | None:intergenic | 35.0% | |
| AAGTGAAGCTATACATAGAG+AGG | - | chr3.3:80784423-80784442 | MS.gene049195:intron | 35.0% | |
| ACTGACAAAGGGAAGATATT+TGG | + | chr3.3:80785225-80785244 | None:intergenic | 35.0% | |
| ATGAAAGGTTCCAGAAACTT+GGG | + | chr3.3:80783940-80783959 | None:intergenic | 35.0% | |
| ATTCCCTATGGCTTATGTAA+TGG | - | chr3.3:80785084-80785103 | MS.gene049195:intron | 35.0% | |
| CTACCATTACATAAGCCATA+GGG | + | chr3.3:80785090-80785109 | None:intergenic | 35.0% | |
| GAGTTCAGAAAGAAAAAGAC+GGG | - | chr3.3:80785173-80785192 | MS.gene049195:CDS | 35.0% | |
| GGAGAAAAGAGAAACATCAA+CGG | - | chr3.3:80783897-80783916 | MS.gene049195:CDS | 35.0% | |
| TGTTCATTGAGAAAACGACA+CGG | + | chr3.3:80783999-80784018 | None:intergenic | 35.0% | |
| ! | ACATTACTGTTAGCTTAGTG+GGG | + | chr3.3:80784896-80784915 | None:intergenic | 35.0% |
| ! | GGAGATTGAGATTGATAACA+AGG | - | chr3.3:80785112-80785131 | MS.gene049195:CDS | 35.0% |
| ! | TGGATTTAGAATCAGTGAAG+AGG | - | chr3.3:80783869-80783888 | MS.gene049195:CDS | 35.0% |
| !! | AGAATCAGTGAAGAGGTATT+TGG | - | chr3.3:80783876-80783895 | MS.gene049195:CDS | 35.0% |
| !! | CTTCTTCTTGCTTTTGATGA+TGG | - | chr3.3:80784057-80784076 | MS.gene049195:intron | 35.0% |
| ATGGCTTATGTAATGGTAGG+AGG | - | chr3.3:80785091-80785110 | MS.gene049195:CDS | 40.0% | |
| CCTACCATTACATAAGCCAT+AGG | + | chr3.3:80785091-80785110 | None:intergenic | 40.0% | |
| CCTATGGCTTATGTAATGGT+AGG | - | chr3.3:80785088-80785107 | MS.gene049195:CDS | 40.0% | |
| GATAACAAGGTTCTACGAGT+AGG | - | chr3.3:80785125-80785144 | MS.gene049195:CDS | 40.0% | |
| GATGAAAGGTTCCAGAAACT+TGG | + | chr3.3:80783941-80783960 | None:intergenic | 40.0% | |
| AAAGGTTCCAGAAACTTGGG+AGG | + | chr3.3:80783937-80783956 | None:intergenic | 45.0% | |
| AGAGTACGAACGAGTAAACG+TGG | + | chr3.3:80784027-80784046 | None:intergenic | 45.0% | |
| AGCATGAGACATTGATCTCG+AGG | + | chr3.3:80784230-80784249 | None:intergenic | 45.0% | |
| AGGGAAACTCCAGTATCCAT+CGG | + | chr3.3:80784210-80784229 | None:intergenic | 45.0% | |
| AGTATCCATCGGAAATCCAG+CGG | + | chr3.3:80784199-80784218 | None:intergenic | 45.0% | |
| CAAGGTTCTACGAGTAGGAA+AGG | - | chr3.3:80785130-80785149 | MS.gene049195:CDS | 45.0% | |
| CACATCCACCAGAGTAACAA+TGG | + | chr3.3:80784154-80784173 | None:intergenic | 45.0% | |
| CGAATTTCCTCCCAAGTTTC+TGG | - | chr3.3:80783927-80783946 | MS.gene049195:CDS | 45.0% | |
| GACGCCCTTGAGCAAAAATT+TGG | + | chr3.3:80785199-80785218 | None:intergenic | 45.0% | |
| GCATGAGACATTGATCTCGA+GGG | + | chr3.3:80784229-80784248 | None:intergenic | 45.0% | |
| GCTCAATGAGATCCAATCGT+AGG | + | chr3.3:80783972-80783991 | None:intergenic | 45.0% | |
| ! | ACGGGCCAAATTTTTGCTCA+AGG | - | chr3.3:80785191-80785210 | MS.gene049195:CDS | 45.0% |
| ! | CATTGTTACTCTGGTGGATG+TGG | - | chr3.3:80784152-80784171 | MS.gene049195:intron | 45.0% |
| ! | CGGGCCAAATTTTTGCTCAA+GGG | - | chr3.3:80785192-80785211 | MS.gene049195:CDS | 45.0% |
| ATTGAGAAAACGACACGGCC+AGG | + | chr3.3:80783994-80784013 | None:intergenic | 50.0% | |
| CGATTGGATCTCATTGAGCC+TGG | - | chr3.3:80783973-80783992 | MS.gene049195:CDS | 50.0% | |
| GCTGGATTTCCGATGGATAC+TGG | - | chr3.3:80784198-80784217 | MS.gene049195:intron | 50.0% | |
| GTACGAACGAGTAAACGTGG+AGG | + | chr3.3:80784024-80784043 | None:intergenic | 50.0% | |
| TCAGGTAAGCACTTGCACGT+TGG | - | chr3.3:80784126-80784145 | MS.gene049195:intron | 50.0% | |
| ! | GTTACTCTGGTGGATGTGGT+AGG | - | chr3.3:80784156-80784175 | MS.gene049195:intron | 50.0% |
| !! | CATTGGCTTGTCAGGGTGAT+TGG | - | chr3.3:80784530-80784549 | MS.gene049195:intron | 50.0% |
| !! | CGTTGGTGCCATTGTTACTC+TGG | - | chr3.3:80784143-80784162 | MS.gene049195:intron | 50.0% |
| !! | TGGTGCCATTGTTACTCTGG+TGG | - | chr3.3:80784146-80784165 | MS.gene049195:intron | 50.0% |
| CTGGAACCTTTCATCGTGCG+TGG | - | chr3.3:80783946-80783965 | MS.gene049195:CDS | 55.0% | |
| GCAATTGCAATTCCTGCCGC+TGG | - | chr3.3:80784180-80784199 | MS.gene049195:intron | 55.0% | |
| CATCGTGCGTGGCCTACGAT+TGG | - | chr3.3:80783957-80783976 | MS.gene049195:CDS | 60.0% | |
| CGTAGGCCACGCACGATGAA+AGG | + | chr3.3:80783955-80783974 | None:intergenic | 60.0% | |
| TCCATCGGAAATCCAGCGGC+AGG | + | chr3.3:80784195-80784214 | None:intergenic | 60.0% | |
| TCCTGCCGCTGGATTTCCGA+TGG | - | chr3.3:80784191-80784210 | MS.gene049195:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 80783868 | 80785253 | 80783868 | ID=MS.gene049195 |
| chr3.3 | mRNA | 80783868 | 80785253 | 80783868 | ID=MS.gene049195.t1;Parent=MS.gene049195 |
| chr3.3 | exon | 80785086 | 80785253 | 80785086 | ID=MS.gene049195.t1.exon1;Parent=MS.gene049195.t1 |
| chr3.3 | CDS | 80785086 | 80785253 | 80785086 | ID=cds.MS.gene049195.t1;Parent=MS.gene049195.t1 |
| chr3.3 | exon | 80784852 | 80784998 | 80784852 | ID=MS.gene049195.t1.exon2;Parent=MS.gene049195.t1 |
| chr3.3 | CDS | 80784852 | 80784998 | 80784852 | ID=cds.MS.gene049195.t1;Parent=MS.gene049195.t1 |
| chr3.3 | exon | 80783868 | 80784011 | 80783868 | ID=MS.gene049195.t1.exon3;Parent=MS.gene049195.t1 |
| chr3.3 | CDS | 80783868 | 80784011 | 80783868 | ID=cds.MS.gene049195.t1;Parent=MS.gene049195.t1 |
| Gene Sequence |
| Protein sequence |
