Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063176.t1 | XP_003603887.2 | 92.4 | 447 | 32 | 1 | 1 | 447 | 1 | 445 | 9.30E-220 | 772.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063176.t1 | Q9SXA1 | 53.4 | 453 | 197 | 4 | 1 | 446 | 1 | 446 | 2.9e-105 | 383.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063176.t1 | G7J6H9 | 92.4 | 447 | 32 | 1 | 1 | 447 | 1 | 445 | 6.7e-220 | 772.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049145 | MS.gene063176 | 0.800992 | 1.11E-48 | -1.69E-46 |
| MS.gene051795 | MS.gene063176 | 0.82992 | 3.93E-55 | -1.69E-46 |
| MS.gene051826 | MS.gene063176 | 0.831854 | 1.32E-55 | -1.69E-46 |
| MS.gene056302 | MS.gene063176 | 0.833014 | 6.80E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063176.t1 | MTR_3g116250 | 97.092 | 447 | 11 | 1 | 1 | 447 | 1 | 445 | 0.0 | 870 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063176.t1 | AT1G49340 | 53.261 | 460 | 187 | 6 | 1 | 446 | 1 | 446 | 1.09e-137 | 436 |
| MS.gene063176.t1 | AT1G49340 | 53.261 | 460 | 187 | 6 | 1 | 446 | 1 | 446 | 1.09e-137 | 436 |
| MS.gene063176.t1 | AT1G49340 | 52.863 | 454 | 186 | 6 | 1 | 440 | 1 | 440 | 1.82e-134 | 427 |
| MS.gene063176.t1 | AT1G49340 | 52.863 | 454 | 186 | 6 | 1 | 440 | 1 | 440 | 1.82e-134 | 427 |
| MS.gene063176.t1 | AT1G51040 | 48.092 | 131 | 56 | 1 | 1 | 119 | 1 | 131 | 7.97e-32 | 127 |
Find 123 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTCCTGGTGGAGGCTCTTC+TGG | 0.020770 | 3.2:-91836347 | MS.gene063176:CDS |
| CTCTTTGGTTCCTTGCTTCT+TGG | 0.122828 | 3.2:-91835597 | MS.gene063176:CDS |
| GATCAATTGGCGCAAAATTT+AGG | 0.189227 | 3.2:-91836383 | MS.gene063176:CDS |
| AGCTTTATAAACTGACAATT+TGG | 0.238342 | 3.2:+91835770 | None:intergenic |
| TCATGTTGATCCCGCGCTTT+TGG | 0.253730 | 3.2:-91836231 | MS.gene063176:CDS |
| GGAGCAAAATGCCGGAAATT+TGG | 0.260895 | 3.2:-91836597 | MS.gene063176:CDS |
| GCCGAGGCGTGCTTGCTATC+TGG | 0.268823 | 3.2:-91835648 | MS.gene063176:CDS |
| GTCTTCGGATGGAAATAAAT+TGG | 0.271562 | 3.2:-91836681 | MS.gene063176:CDS |
| AACTCGATTGCGACTGATTT+AGG | 0.275304 | 3.2:+91836950 | None:intergenic |
| GTCCTGGTGGAGGCTCTTCT+GGG | 0.276759 | 3.2:-91836346 | MS.gene063176:CDS |
| GTGGCTGTTCCGAGCACGCC+TGG | 0.298674 | 3.2:-91836620 | MS.gene063176:CDS |
| GTTATCCGCGTTTGCGGAAC+AGG | 0.311830 | 3.2:-91836762 | MS.gene063176:CDS |
| ATTCCTTTACTCACTCCTTT+TGG | 0.328243 | 3.2:-91836910 | MS.gene063176:CDS |
| TTTCCATCCGAAGACGAAAT+AGG | 0.332474 | 3.2:+91836689 | None:intergenic |
| TCTTTGGTTCCTTGCTTCTT+GGG | 0.333861 | 3.2:-91835596 | MS.gene063176:CDS |
| AGAAGAATTATCCAAATTTC+CGG | 0.334559 | 3.2:+91836586 | None:intergenic |
| AGTCGGACTACCATTATAAT+TGG | 0.336821 | 3.2:+91836523 | None:intergenic |
| AGAGGTTCGGTTGTGACTAA+TGG | 0.338691 | 3.2:-91836434 | MS.gene063176:CDS |
| CGACGAAGATTGTGCAGCTT+TGG | 0.340909 | 3.2:+91836826 | None:intergenic |
| TTCGAGTGGCGCGGCTTCTA+AGG | 0.349228 | 3.2:-91836495 | MS.gene063176:CDS |
| TTGGAGCAGGCTAGGTTGAT+TGG | 0.354782 | 3.2:-91836212 | MS.gene063176:CDS |
| GAGGTTCGGTTGTGACTAAT+GGG | 0.382870 | 3.2:-91836433 | MS.gene063176:CDS |
| AGAACATGTGAAGAGCTCTT+TGG | 0.399675 | 3.2:-91835612 | MS.gene063176:CDS |
| TCTTTCTTCAACGATTTCAT+TGG | 0.401489 | 3.2:-91836857 | MS.gene063176:CDS |
| TGGCTGTTCCGAGCACGCCT+GGG | 0.401500 | 3.2:-91836619 | MS.gene063176:CDS |
| TGGAGGCTCTTCTGGGCAAC+AGG | 0.402163 | 3.2:-91836339 | MS.gene063176:CDS |
| AGTTGTGTTATCCGCGTTTG+CGG | 0.407797 | 3.2:-91836768 | MS.gene063176:CDS |
| TGTTCTCAACGTTTGTGCTC+AGG | 0.412316 | 3.2:-91835505 | None:intergenic |
| GAAGAAAGATGCAACGAAAT+CGG | 0.412381 | 3.2:+91836871 | None:intergenic |
| TATAATTGGTCTGAGATTGA+TGG | 0.416650 | 3.2:+91836537 | None:intergenic |
| CCGCAATGGCTGACCTCCTC+GGG | 0.422534 | 3.2:+91835554 | None:intergenic |
| GATTTCGCCGACGAGGTTGC+TGG | 0.426671 | 3.2:-91836803 | MS.gene063176:CDS |
| GCACAAACGTTGAGAACAAT+TGG | 0.427366 | 3.2:+91835510 | None:intergenic |
| TTCGAGATCCGTCAAGAGAT+TGG | 0.429020 | 3.2:-91835703 | MS.gene063176:CDS |
| GAAGAGGGATTGGCACGAGC+AGG | 0.429926 | 3.2:-91835820 | MS.gene063176:CDS |
| CTCATAAACCAATCTCTTGA+CGG | 0.437075 | 3.2:+91835695 | None:intergenic |
| TCCGCAATGGCTGACCTCCT+CGG | 0.438852 | 3.2:+91835553 | None:intergenic |
| CAATCTCAGACCAATTATAA+TGG | 0.439816 | 3.2:-91836533 | MS.gene063176:CDS |
| GAGGAGTAATGCCGATCAAT+TGG | 0.441832 | 3.2:-91836396 | MS.gene063176:CDS |
| AATCAAGAGCCTCTCGGCAT+TGG | 0.441885 | 3.2:-91835733 | MS.gene063176:CDS |
| GCAAATCCATGAGAGTTTAT+CGG | 0.442296 | 3.2:+91837096 | None:intergenic |
| CAAAATTTAGGTTTAAATGA+TGG | 0.442853 | 3.2:-91836371 | MS.gene063176:CDS |
| GGCGCGGCTTCTAAGGCTGC+TGG | 0.443701 | 3.2:-91836488 | MS.gene063176:CDS |
| TGGAGCAGGCTAGGTTGATT+GGG | 0.447080 | 3.2:-91836211 | MS.gene063176:CDS |
| CACCGCTTCATCAAGAGGTT+CGG | 0.449844 | 3.2:-91836447 | MS.gene063176:CDS |
| GCAACAGGTTACTTCCTTTG+AGG | 0.464751 | 3.2:-91836324 | MS.gene063176:CDS |
| GGTTTAAATGATGGTGGTCC+TGG | 0.468814 | 3.2:-91836362 | MS.gene063176:CDS |
| TGCAGATAAGGAAGAGGGAT+TGG | 0.470835 | 3.2:-91835830 | MS.gene063176:intron |
| CGTCAAGAGATTGGTTTATG+AGG | 0.471272 | 3.2:-91835694 | MS.gene063176:CDS |
| ACGCGAAACCCTAGGCGATC+CGG | 0.489088 | 3.2:+91837042 | None:intergenic |
| CTTCCTATTTCGTCTTCGGA+TGG | 0.489194 | 3.2:-91836692 | MS.gene063176:CDS |
| ATCTCTCCGCCGGATCGCCT+AGG | 0.503416 | 3.2:-91837051 | MS.gene063176:CDS |
| AGTTTATCGGAGAATTGAGA+TGG | 0.509244 | 3.2:+91837109 | None:intergenic |
| ACAGGATTCTGTTATTGCTA+GGG | 0.511713 | 3.2:-91836744 | MS.gene063176:CDS |
| ACGCCTGGGGAGCAAAATGC+CGG | 0.513611 | 3.2:-91836605 | MS.gene063176:CDS |
| AACAGGATTCTGTTATTGCT+AGG | 0.518506 | 3.2:-91836745 | MS.gene063176:CDS |
| TGCCCAGAAGAGCCTCCACC+AGG | 0.521778 | 3.2:+91836344 | None:intergenic |
| CAAAGCTGCACAATCTTCGT+CGG | 0.521803 | 3.2:-91836825 | MS.gene063176:CDS |
| AAATCGGCGTTGAACGGTTG+AGG | 0.523225 | 3.2:+91836887 | None:intergenic |
| AAGAGGGATTGGCACGAGCA+GGG | 0.527002 | 3.2:-91835819 | MS.gene063176:CDS |
| AATGATGGTGGTCCTGGTGG+AGG | 0.528136 | 3.2:-91836356 | MS.gene063176:CDS |
| AGAGGGATTGGCACGAGCAG+GGG | 0.528700 | 3.2:-91835818 | MS.gene063176:CDS |
| TCCAGATAGCAAGCACGCCT+CGG | 0.530219 | 3.2:+91835647 | None:intergenic |
| TTCCTTTGAGGAAGAGTCTG+TGG | 0.531014 | 3.2:-91836312 | MS.gene063176:CDS |
| CTTTGGTTCCTTGCTTCTTG+GGG | 0.531215 | 3.2:-91835595 | MS.gene063176:CDS |
| GATTGATGGTTTCCACTCAA+AGG | 0.532801 | 3.2:+91836551 | None:intergenic |
| TAAAGTGATTGCTCATGTGT+TGG | 0.536964 | 3.2:-91836261 | MS.gene063176:CDS |
| GACGAGGTTGCTGGATTCAC+CGG | 0.537863 | 3.2:-91836794 | MS.gene063176:CDS |
| AATTCTCCGATAAACTCTCA+TGG | 0.543485 | 3.2:-91837102 | MS.gene063176:CDS |
| AGGCGTGCTTGCTATCTGGA+TGG | 0.545008 | 3.2:-91835644 | MS.gene063176:CDS |
| GAAACGAGCGACGGCGGTAA+CGG | 0.546526 | 3.2:+91837006 | None:intergenic |
| GTTGAACGGTTGAGGCCAAA+AGG | 0.546971 | 3.2:+91836895 | None:intergenic |
| GATTGCTCATGTGTTGGAAA+AGG | 0.547511 | 3.2:-91836255 | MS.gene063176:CDS |
| GCGGAGAGATACTCCGGCGG+TGG | 0.547790 | 3.2:+91837064 | None:intergenic |
| TCTCTCCGCCGGATCGCCTA+GGG | 0.549048 | 3.2:-91837050 | MS.gene063176:CDS |
| TACCTTTAGAAAAGCAGACA+TGG | 0.549665 | 3.2:+91836172 | None:intergenic |
| GCAACGAAATCGGCGTTGAA+CGG | 0.550602 | 3.2:+91836881 | None:intergenic |
| CGCGGATAACACAACTTCAC+CGG | 0.551193 | 3.2:+91836775 | None:intergenic |
| AACCGAACCTCTTGATGAAG+CGG | 0.551858 | 3.2:+91836445 | None:intergenic |
| GCTCAGAGCTCGCCTTTGAG+TGG | 0.552326 | 3.2:-91836563 | MS.gene063176:CDS |
| GGCTGTTCCGAGCACGCCTG+GGG | 0.561451 | 3.2:-91836618 | MS.gene063176:CDS |
| CCCGAGGAGGTCAGCCATTG+CGG | 0.562306 | 3.2:-91835554 | MS.gene063176:CDS |
| TATGAAAATCAAGAGCCTCT+CGG | 0.564019 | 3.2:-91835739 | MS.gene063176:CDS |
| TTGTTTGATTGAACAATATG+CGG | 0.568326 | 3.2:-91836654 | MS.gene063176:CDS |
| GTCCACAGACTCTTCCTCAA+AGG | 0.568589 | 3.2:+91836310 | None:intergenic |
| AATTTAGGTTTAAATGATGG+TGG | 0.569117 | 3.2:-91836368 | MS.gene063176:CDS |
| CTAGCCTGCTCCAAAAGCGC+GGG | 0.574590 | 3.2:+91836221 | None:intergenic |
| GCTAGCACCGCTTCATCAAG+AGG | 0.578187 | 3.2:-91836452 | MS.gene063176:CDS |
| CCGCCGGAGTATCTCTCCGC+CGG | 0.579076 | 3.2:-91837061 | MS.gene063176:CDS |
| AGTTCTTGCAGATAAGGAAG+AGG | 0.579108 | 3.2:-91835836 | MS.gene063176:intron |
| AGAATCCTGTTCCGCAAACG+CGG | 0.580545 | 3.2:+91836757 | None:intergenic |
| AGCTGAGAACGCGAAACCCT+AGG | 0.585255 | 3.2:+91837034 | None:intergenic |
| GATCCGGCGGAGAGATACTC+CGG | 0.587432 | 3.2:+91837058 | None:intergenic |
| GACTGATTTAGGTCGTAGAT+CGG | 0.592590 | 3.2:+91836961 | None:intergenic |
| CCTAGCCTGCTCCAAAAGCG+CGG | 0.601024 | 3.2:+91836220 | None:intergenic |
| AGGCCAAAAGGAGTGAGTAA+AGG | 0.601532 | 3.2:+91836907 | None:intergenic |
| TTGTGCTACCCCAAGAAGCA+AGG | 0.610649 | 3.2:+91835587 | None:intergenic |
| TTGCGATAAATGTCCACCGC+CGG | 0.611784 | 3.2:-91837077 | MS.gene063176:CDS |
| TAAAGGAATGCGGAATTGAA+CGG | 0.613714 | 3.2:+91836924 | None:intergenic |
| TTAAATGATGGTGGTCCTGG+TGG | 0.616431 | 3.2:-91836359 | MS.gene063176:CDS |
| GTTCTTGCAGATAAGGAAGA+GGG | 0.619088 | 3.2:-91835835 | MS.gene063176:intron |
| TGATGAAGCGGTGCTAGCAG+TGG | 0.623055 | 3.2:+91836457 | None:intergenic |
| TGATTTAGGTCGTAGATCGG+TGG | 0.626909 | 3.2:+91836964 | None:intergenic |
| AGATAAGAAACGAGCGACGG+CGG | 0.628364 | 3.2:+91837000 | None:intergenic |
| CGAATGAGCAAAATCCGCAA+TGG | 0.632134 | 3.2:+91835540 | None:intergenic |
| GACTAGTAATTCGAGTGGCG+CGG | 0.632291 | 3.2:-91836504 | MS.gene063176:CDS |
| CGTGCTTGCTATCTGGATGG+AGG | 0.641971 | 3.2:-91835641 | MS.gene063176:CDS |
| GGTTCGGTTGTGACTAATGG+GGG | 0.642464 | 3.2:-91836431 | MS.gene063176:CDS |
| CGAAACCCTAGGCGATCCGG+CGG | 0.660530 | 3.2:+91837045 | None:intergenic |
| TTCGTCGGATTTCGCCGACG+AGG | 0.664762 | 3.2:-91836810 | MS.gene063176:CDS |
| GCACAAATTGCTATTGCCCG+AGG | 0.667643 | 3.2:-91835570 | MS.gene063176:CDS |
| CAAATTGCTATTGCCCGAGG+AGG | 0.673919 | 3.2:-91835567 | MS.gene063176:CDS |
| AATATTGATAGATGCAGCCG+AGG | 0.674068 | 3.2:-91835664 | MS.gene063176:CDS |
| AAGGAGTGAGTAAAGGAATG+CGG | 0.683504 | 3.2:+91836914 | None:intergenic |
| GGTGAATCCAGCAACCTCGT+CGG | 0.684528 | 3.2:+91836796 | None:intergenic |
| GCGCCACTCGAATTACTAGT+CGG | 0.688126 | 3.2:+91836506 | None:intergenic |
| AGGTTCGGTTGTGACTAATG+GGG | 0.689127 | 3.2:-91836432 | MS.gene063176:CDS |
| AGTCCGACTAGTAATTCGAG+TGG | 0.703951 | 3.2:-91836509 | MS.gene063176:CDS |
| GTTAGATAAGAAACGAGCGA+CGG | 0.720253 | 3.2:+91836997 | None:intergenic |
| AATCAGAATCCAATGCCGAG+AGG | 0.732975 | 3.2:+91835724 | None:intergenic |
| ATATGCGGCACAGATTGCTG+TGG | 0.738077 | 3.2:-91836639 | MS.gene063176:CDS |
| CCGGCGGAGAGATACTCCGG+CGG | 0.750280 | 3.2:+91837061 | None:intergenic |
| AGGAATGCGGAATTGAACGG+AGG | 0.756768 | 3.2:+91836927 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAAATTTAGGTTTAAATGA+TGG | - | chr3.2:91836286-91836305 | MS.gene063176:CDS | 20.0% |
| !!! | TTAAAGTTTAGGTTTATTTG+AGG | - | chr3.2:91836773-91836792 | MS.gene063176:CDS | 20.0% |
| ! | AGAAAATAAATACAAACCGA+AGG | + | chr3.2:91836530-91836549 | None:intergenic | 25.0% |
| ! | AGAAGAATTATCCAAATTTC+CGG | + | chr3.2:91836074-91836093 | None:intergenic | 25.0% |
| ! | TTGTTTGATTGAACAATATG+CGG | - | chr3.2:91836003-91836022 | MS.gene063176:intron | 25.0% |
| !! | AATTTAGGTTTAAATGATGG+TGG | - | chr3.2:91836289-91836308 | MS.gene063176:CDS | 25.0% |
| !! | AGCTTTATAAACTGACAATT+TGG | + | chr3.2:91836890-91836909 | None:intergenic | 25.0% |
| CAAATACAGCTATGCTATAA+CGG | - | chr3.2:91836731-91836750 | MS.gene063176:CDS | 30.0% | |
| CAATCTCAGACCAATTATAA+TGG | - | chr3.2:91836124-91836143 | MS.gene063176:intron | 30.0% | |
| CACTATAGTGGTTAAAGTTT+AGG | - | chr3.2:91836762-91836781 | MS.gene063176:CDS | 30.0% | |
| CTAAACTTTAACCACTATAG+TGG | + | chr3.2:91836764-91836783 | None:intergenic | 30.0% | |
| TCTTTCTTCAACGATTTCAT+TGG | - | chr3.2:91835800-91835819 | MS.gene063176:CDS | 30.0% | |
| ! | TAAATTTTGCGCCAATTGAT+CGG | + | chr3.2:91836275-91836294 | None:intergenic | 30.0% |
| ! | TATAATTGGTCTGAGATTGA+TGG | + | chr3.2:91836123-91836142 | None:intergenic | 30.0% |
| ! | TTTTCTTCCTATTTCGTCTT+CGG | - | chr3.2:91835961-91835980 | MS.gene063176:intron | 30.0% |
| !!! | ATTTTTTCGTACAATGCCTT+CGG | - | chr3.2:91836511-91836530 | MS.gene063176:CDS | 30.0% |
| AACAGGATTCTGTTATTGCT+AGG | - | chr3.2:91835912-91835931 | MS.gene063176:intron | 35.0% | |
| AATTCTCCGATAAACTCTCA+TGG | - | chr3.2:91835555-91835574 | MS.gene063176:CDS | 35.0% | |
| ACACTGTTGAATGTGGATAA+TGG | - | chr3.2:91836572-91836591 | MS.gene063176:CDS | 35.0% | |
| ACAGGATTCTGTTATTGCTA+GGG | - | chr3.2:91835913-91835932 | MS.gene063176:intron | 35.0% | |
| AGTCGGACTACCATTATAAT+TGG | + | chr3.2:91836137-91836156 | None:intergenic | 35.0% | |
| AGTTTATCGGAGAATTGAGA+TGG | + | chr3.2:91835551-91835570 | None:intergenic | 35.0% | |
| ATGGTTTACACTGTTGAATG+TGG | - | chr3.2:91836565-91836584 | MS.gene063176:CDS | 35.0% | |
| CGTTATAGCATAGCTGTATT+TGG | + | chr3.2:91836733-91836752 | None:intergenic | 35.0% | |
| CTCATAAACCAATCTCTTGA+CGG | + | chr3.2:91836965-91836984 | None:intergenic | 35.0% | |
| GAAGAAAGATGCAACGAAAT+CGG | + | chr3.2:91835789-91835808 | None:intergenic | 35.0% | |
| GATCAATTGGCGCAAAATTT+AGG | - | chr3.2:91836274-91836293 | MS.gene063176:CDS | 35.0% | |
| GCAAATCCATGAGAGTTTAT+CGG | + | chr3.2:91835564-91835583 | None:intergenic | 35.0% | |
| GTCTTCGGATGGAAATAAAT+TGG | - | chr3.2:91835976-91835995 | MS.gene063176:intron | 35.0% | |
| TAAAGGAATGCGGAATTGAA+CGG | + | chr3.2:91835736-91835755 | None:intergenic | 35.0% | |
| TAAAGTGATTGCTCATGTGT+TGG | - | chr3.2:91836396-91836415 | MS.gene063176:CDS | 35.0% | |
| TATGAAAATCAAGAGCCTCT+CGG | - | chr3.2:91836918-91836937 | MS.gene063176:CDS | 35.0% | |
| TTATCAAATAGCCGCTATAG+TGG | + | chr3.2:91836667-91836686 | None:intergenic | 35.0% | |
| TTCTCTGTTATGATTCGTCA+TGG | - | chr3.2:91836546-91836565 | MS.gene063176:CDS | 35.0% | |
| TTGTACCAAATAGCGTATTG+CGG | - | chr3.2:91836691-91836710 | MS.gene063176:CDS | 35.0% | |
| ! | ATTCCTTTACTCACTCCTTT+TGG | - | chr3.2:91835747-91835766 | MS.gene063176:CDS | 35.0% |
| ! | TACCTTTAGAAAAGCAGACA+TGG | + | chr3.2:91836488-91836507 | None:intergenic | 35.0% |
| !! | ATCCATGTCTGCTTTTCTAA+AGG | - | chr3.2:91836483-91836502 | MS.gene063176:CDS | 35.0% |
| !!! | CGTTGAGAACAATTGGTTTT+AGG | + | chr3.2:91837143-91837162 | None:intergenic | 35.0% |
| AAGGAGTGAGTAAAGGAATG+CGG | + | chr3.2:91835746-91835765 | None:intergenic | 40.0% | |
| AATATTGATAGATGCAGCCG+AGG | - | chr3.2:91836993-91837012 | MS.gene063176:CDS | 40.0% | |
| AATGCGCAATTAACGACACT+AGG | + | chr3.2:91836616-91836635 | None:intergenic | 40.0% | |
| AGAACATGTGAAGAGCTCTT+TGG | - | chr3.2:91837045-91837064 | MS.gene063176:CDS | 40.0% | |
| AGTTCTTGCAGATAAGGAAG+AGG | - | chr3.2:91836821-91836840 | MS.gene063176:CDS | 40.0% | |
| CTAATGGGGGAAGTCATATA+TGG | - | chr3.2:91836239-91836258 | MS.gene063176:CDS | 40.0% | |
| CTTGCAAGTTCTTGCAGATA+AGG | - | chr3.2:91836815-91836834 | MS.gene063176:CDS | 40.0% | |
| GATTGCTCATGTGTTGGAAA+AGG | - | chr3.2:91836402-91836421 | MS.gene063176:CDS | 40.0% | |
| GCACAAACGTTGAGAACAAT+TGG | + | chr3.2:91837150-91837169 | None:intergenic | 40.0% | |
| GTTAGATAAGAAACGAGCGA+CGG | + | chr3.2:91835663-91835682 | None:intergenic | 40.0% | |
| GTTCTTGCAGATAAGGAAGA+GGG | - | chr3.2:91836822-91836841 | MS.gene063176:CDS | 40.0% | |
| TTGTTCCGCAATACGCTATT+TGG | + | chr3.2:91836699-91836718 | None:intergenic | 40.0% | |
| TTTCCATCCGAAGACGAAAT+AGG | + | chr3.2:91835971-91835990 | None:intergenic | 40.0% | |
| ! | AACTCGATTGCGACTGATTT+AGG | + | chr3.2:91835710-91835729 | None:intergenic | 40.0% |
| ! | GACTGATTTAGGTCGTAGAT+CGG | + | chr3.2:91835699-91835718 | None:intergenic | 40.0% |
| ! | GATTGATGGTTTCCACTCAA+AGG | + | chr3.2:91836109-91836128 | None:intergenic | 40.0% |
| ! | TCTTTGGTTCCTTGCTTCTT+GGG | - | chr3.2:91837061-91837080 | MS.gene063176:CDS | 40.0% |
| !! | CGTCAAGAGATTGGTTTATG+AGG | - | chr3.2:91836963-91836982 | MS.gene063176:CDS | 40.0% |
| !! | GAGATGGATTTTGTGCAATG+AGG | + | chr3.2:91835535-91835554 | None:intergenic | 40.0% |
| !! | TGAATGTGGATAATGGAGTG+AGG | - | chr3.2:91836579-91836598 | MS.gene063176:CDS | 40.0% |
| AACCGAACCTCTTGATGAAG+CGG | + | chr3.2:91836215-91836234 | None:intergenic | 45.0% | |
| AATCAGAATCCAATGCCGAG+AGG | + | chr3.2:91836936-91836955 | None:intergenic | 45.0% | |
| AGCGTATTGCGGAACAATAG+CGG | - | chr3.2:91836702-91836721 | MS.gene063176:CDS | 45.0% | |
| AGGCCAAAAGGAGTGAGTAA+AGG | + | chr3.2:91835753-91835772 | None:intergenic | 45.0% | |
| AGTCCGACTAGTAATTCGAG+TGG | - | chr3.2:91836148-91836167 | MS.gene063176:intron | 45.0% | |
| AGTTGTGTTATCCGCGTTTG+CGG | - | chr3.2:91835889-91835908 | MS.gene063176:intron | 45.0% | |
| ATGGGGGAAGTCATATATGG+AGG | - | chr3.2:91836242-91836261 | MS.gene063176:CDS | 45.0% | |
| CAAAGCTGCACAATCTTCGT+CGG | - | chr3.2:91835832-91835851 | MS.gene063176:intron | 45.0% | |
| CGAATGAGCAAAATCCGCAA+TGG | + | chr3.2:91837120-91837139 | None:intergenic | 45.0% | |
| CTTCCTATTTCGTCTTCGGA+TGG | - | chr3.2:91835965-91835984 | MS.gene063176:intron | 45.0% | |
| GAGGAGTAATGCCGATCAAT+TGG | - | chr3.2:91836261-91836280 | MS.gene063176:CDS | 45.0% | |
| GCAACAGGTTACTTCCTTTG+AGG | - | chr3.2:91836333-91836352 | MS.gene063176:CDS | 45.0% | |
| GGAGCAAAATGCCGGAAATT+TGG | - | chr3.2:91836060-91836079 | MS.gene063176:intron | 45.0% | |
| TGATTTAGGTCGTAGATCGG+TGG | + | chr3.2:91835696-91835715 | None:intergenic | 45.0% | |
| TGCAGATAAGGAAGAGGGAT+TGG | - | chr3.2:91836827-91836846 | MS.gene063176:CDS | 45.0% | |
| TTCGAGATCCGTCAAGAGAT+TGG | - | chr3.2:91836954-91836973 | MS.gene063176:CDS | 45.0% | |
| ! | ACGGTATAGTGCCACTATAG+TGG | - | chr3.2:91836750-91836769 | MS.gene063176:CDS | 45.0% |
| ! | AGAGGTTCGGTTGTGACTAA+TGG | - | chr3.2:91836223-91836242 | MS.gene063176:CDS | 45.0% |
| ! | AGGTTCGGTTGTGACTAATG+GGG | - | chr3.2:91836225-91836244 | MS.gene063176:CDS | 45.0% |
| ! | CTCTTTGGTTCCTTGCTTCT+TGG | - | chr3.2:91837060-91837079 | MS.gene063176:CDS | 45.0% |
| ! | CTTTGGTTCCTTGCTTCTTG+GGG | - | chr3.2:91837062-91837081 | MS.gene063176:CDS | 45.0% |
| ! | GAGGTTCGGTTGTGACTAAT+GGG | - | chr3.2:91836224-91836243 | MS.gene063176:CDS | 45.0% |
| ! | GGAAGAGTCTGTGGACTTTT+TGG | - | chr3.2:91836354-91836373 | MS.gene063176:CDS | 45.0% |
| ! | TTCCTTTGAGGAAGAGTCTG+TGG | - | chr3.2:91836345-91836364 | MS.gene063176:CDS | 45.0% |
| !! | GGTTTAAATGATGGTGGTCC+TGG | - | chr3.2:91836295-91836314 | MS.gene063176:CDS | 45.0% |
| !! | TTAAATGATGGTGGTCCTGG+TGG | - | chr3.2:91836298-91836317 | MS.gene063176:CDS | 45.0% |
| AATCAAGAGCCTCTCGGCAT+TGG | - | chr3.2:91836924-91836943 | MS.gene063176:CDS | 50.0% | |
| AGAATCCTGTTCCGCAAACG+CGG | + | chr3.2:91835903-91835922 | None:intergenic | 50.0% | |
| AGATAAGAAACGAGCGACGG+CGG | + | chr3.2:91835660-91835679 | None:intergenic | 50.0% | |
| AGGAATGCGGAATTGAACGG+AGG | + | chr3.2:91835733-91835752 | None:intergenic | 50.0% | |
| ATATGCGGCACAGATTGCTG+TGG | - | chr3.2:91836018-91836037 | MS.gene063176:intron | 50.0% | |
| CAACAGTAGCGCCACTATAG+CGG | - | chr3.2:91836653-91836672 | MS.gene063176:CDS | 50.0% | |
| CACCGCTTCATCAAGAGGTT+CGG | - | chr3.2:91836210-91836229 | MS.gene063176:CDS | 50.0% | |
| CGACGAAGATTGTGCAGCTT+TGG | + | chr3.2:91835834-91835853 | None:intergenic | 50.0% | |
| CGCGGATAACACAACTTCAC+CGG | + | chr3.2:91835885-91835904 | None:intergenic | 50.0% | |
| GACTAGTAATTCGAGTGGCG+CGG | - | chr3.2:91836153-91836172 | MS.gene063176:intron | 50.0% | |
| GCGCCACTCGAATTACTAGT+CGG | + | chr3.2:91836154-91836173 | None:intergenic | 50.0% | |
| GTCCACAGACTCTTCCTCAA+AGG | + | chr3.2:91836350-91836369 | None:intergenic | 50.0% | |
| GTTGAACGGTTGAGGCCAAA+AGG | + | chr3.2:91835765-91835784 | None:intergenic | 50.0% | |
| TTGCGATAAATGTCCACCGC+CGG | - | chr3.2:91835580-91835599 | MS.gene063176:CDS | 50.0% | |
| TTGTGCTACCCCAAGAAGCA+AGG | + | chr3.2:91837073-91837092 | None:intergenic | 50.0% | |
| ! | AAATCGGCGTTGAACGGTTG+AGG | + | chr3.2:91835773-91835792 | None:intergenic | 50.0% |
| ! | CAAATTGCTATTGCCCGAGG+AGG | - | chr3.2:91837090-91837109 | MS.gene063176:CDS | 50.0% |
| ! | GCAACGAAATCGGCGTTGAA+CGG | + | chr3.2:91835779-91835798 | None:intergenic | 50.0% |
| ! | GCACAAATTGCTATTGCCCG+AGG | - | chr3.2:91837087-91837106 | MS.gene063176:CDS | 50.0% |
| ! | GGTTCGGTTGTGACTAATGG+GGG | - | chr3.2:91836226-91836245 | MS.gene063176:CDS | 50.0% |
| ! | TCATGTTGATCCCGCGCTTT+TGG | - | chr3.2:91836426-91836445 | MS.gene063176:CDS | 50.0% |
| !! | TGGAGCAGGCTAGGTTGATT+GGG | - | chr3.2:91836446-91836465 | MS.gene063176:CDS | 50.0% |
| !! | TTGGAGCAGGCTAGGTTGAT+TGG | - | chr3.2:91836445-91836464 | MS.gene063176:CDS | 50.0% |
| AGCTGAGAACGCGAAACCCT+AGG | + | chr3.2:91835626-91835645 | None:intergenic | 55.0% | |
| GACGAGGTTGCTGGATTCAC+CGG | - | chr3.2:91835863-91835882 | MS.gene063176:intron | 55.0% | |
| GCTAGCACCGCTTCATCAAG+AGG | - | chr3.2:91836205-91836224 | MS.gene063176:CDS | 55.0% | |
| GGTGAATCCAGCAACCTCGT+CGG | + | chr3.2:91835864-91835883 | None:intergenic | 55.0% | |
| GTGGCGCTACTGTTGCATAG+CGG | + | chr3.2:91836648-91836667 | None:intergenic | 55.0% | |
| GTTATCCGCGTTTGCGGAAC+AGG | - | chr3.2:91835895-91835914 | MS.gene063176:intron | 55.0% | |
| TCCAGATAGCAAGCACGCCT+CGG | + | chr3.2:91837013-91837032 | None:intergenic | 55.0% | |
| ! | AAGAGGGATTGGCACGAGCA+GGG | - | chr3.2:91836838-91836857 | MS.gene063176:CDS | 55.0% |
| ! | TGATGAAGCGGTGCTAGCAG+TGG | + | chr3.2:91836203-91836222 | None:intergenic | 55.0% |
| ! | TTTCCGGCATTTTGCTCCCC+AGG | + | chr3.2:91836058-91836077 | None:intergenic | 55.0% |
| !! | AATGATGGTGGTCCTGGTGG+AGG | - | chr3.2:91836301-91836320 | MS.gene063176:CDS | 55.0% |
| !! | AGGCGTGCTTGCTATCTGGA+TGG | - | chr3.2:91837013-91837032 | MS.gene063176:CDS | 55.0% |
| !! | CGTGCTTGCTATCTGGATGG+AGG | - | chr3.2:91837016-91837035 | MS.gene063176:CDS | 55.0% |
| ACGCCTGGGGAGCAAAATGC+CGG | - | chr3.2:91836052-91836071 | MS.gene063176:intron | 60.0% | |
| ACGCGAAACCCTAGGCGATC+CGG | + | chr3.2:91835618-91835637 | None:intergenic | 60.0% | |
| CCTAGCCTGCTCCAAAAGCG+CGG | + | chr3.2:91836440-91836459 | None:intergenic | 60.0% | |
| GAAACGAGCGACGGCGGTAA+CGG | + | chr3.2:91835654-91835673 | None:intergenic | 60.0% | |
| GATCCGGCGGAGAGATACTC+CGG | + | chr3.2:91835602-91835621 | None:intergenic | 60.0% | |
| GATTTCGCCGACGAGGTTGC+TGG | - | chr3.2:91835854-91835873 | MS.gene063176:intron | 60.0% | |
| GCTCAGAGCTCGCCTTTGAG+TGG | - | chr3.2:91836094-91836113 | MS.gene063176:intron | 60.0% | |
| GTCCTGGTGGAGGCTCTTCT+GGG | - | chr3.2:91836311-91836330 | MS.gene063176:CDS | 60.0% | |
| TCCGCAATGGCTGACCTCCT+CGG | + | chr3.2:91837107-91837126 | None:intergenic | 60.0% | |
| TGGAGGCTCTTCTGGGCAAC+AGG | - | chr3.2:91836318-91836337 | MS.gene063176:CDS | 60.0% | |
| TTCGAGTGGCGCGGCTTCTA+AGG | - | chr3.2:91836162-91836181 | MS.gene063176:intron | 60.0% | |
| TTCGTCGGATTTCGCCGACG+AGG | - | chr3.2:91835847-91835866 | MS.gene063176:intron | 60.0% | |
| ! | AGAGGGATTGGCACGAGCAG+GGG | - | chr3.2:91836839-91836858 | MS.gene063176:CDS | 60.0% |
| ! | CTAGCCTGCTCCAAAAGCGC+GGG | + | chr3.2:91836439-91836458 | None:intergenic | 60.0% |
| ! | GAAGAGGGATTGGCACGAGC+AGG | - | chr3.2:91836837-91836856 | MS.gene063176:CDS | 60.0% |
| ! | TTTTGCTCCCCAGGCGTGCT+CGG | + | chr3.2:91836049-91836068 | None:intergenic | 60.0% |
| !!! | TGATCCCGCGCTTTTGGAGC+AGG | - | chr3.2:91836432-91836451 | MS.gene063176:CDS | 60.0% |
| ATCTCTCCGCCGGATCGCCT+AGG | - | chr3.2:91835606-91835625 | MS.gene063176:CDS | 65.0% | |
| CCCGAGGAGGTCAGCCATTG+CGG | - | chr3.2:91837103-91837122 | MS.gene063176:CDS | 65.0% | |
| CCGCAATGGCTGACCTCCTC+GGG | + | chr3.2:91837106-91837125 | None:intergenic | 65.0% | |
| CGAAACCCTAGGCGATCCGG+CGG | + | chr3.2:91835615-91835634 | None:intergenic | 65.0% | |
| GGTCCTGGTGGAGGCTCTTC+TGG | - | chr3.2:91836310-91836329 | MS.gene063176:CDS | 65.0% | |
| TCTCTCCGCCGGATCGCCTA+GGG | - | chr3.2:91835607-91835626 | MS.gene063176:CDS | 65.0% | |
| TGCCCAGAAGAGCCTCCACC+AGG | + | chr3.2:91836316-91836335 | None:intergenic | 65.0% | |
| TGGCTGTTCCGAGCACGCCT+GGG | - | chr3.2:91836038-91836057 | MS.gene063176:intron | 65.0% | |
| !! | GCCGAGGCGTGCTTGCTATC+TGG | - | chr3.2:91837009-91837028 | MS.gene063176:CDS | 65.0% |
| !!! | CCGCGCTTTTGGAGCAGGCT+AGG | - | chr3.2:91836437-91836456 | MS.gene063176:CDS | 65.0% |
| CCGGCGGAGAGATACTCCGG+CGG | + | chr3.2:91835599-91835618 | None:intergenic | 70.0% | |
| GCGGAGAGATACTCCGGCGG+TGG | + | chr3.2:91835596-91835615 | None:intergenic | 70.0% | |
| GGCTGTTCCGAGCACGCCTG+GGG | - | chr3.2:91836039-91836058 | MS.gene063176:intron | 70.0% | |
| GTGGCTGTTCCGAGCACGCC+TGG | - | chr3.2:91836037-91836056 | MS.gene063176:intron | 70.0% | |
| ! | CCGCCGGAGTATCTCTCCGC+CGG | - | chr3.2:91835596-91835615 | MS.gene063176:CDS | 70.0% |
| !! | GGCGCGGCTTCTAAGGCTGC+TGG | - | chr3.2:91836169-91836188 | MS.gene063176:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 91835506 | 91837173 | 91835506 | ID=MS.gene063176 |
| chr3.2 | mRNA | 91835506 | 91837173 | 91835506 | ID=MS.gene063176.t1;Parent=MS.gene063176 |
| chr3.2 | exon | 91836175 | 91837173 | 91836175 | ID=MS.gene063176.t1.exon1;Parent=MS.gene063176.t1 |
| chr3.2 | CDS | 91836175 | 91837173 | 91836175 | ID=cds.MS.gene063176.t1;Parent=MS.gene063176.t1 |
| chr3.2 | exon | 91835506 | 91835847 | 91835506 | ID=MS.gene063176.t1.exon2;Parent=MS.gene063176.t1 |
| chr3.2 | CDS | 91835506 | 91835847 | 91835506 | ID=cds.MS.gene063176.t1;Parent=MS.gene063176.t1 |
| Gene Sequence |
| Protein sequence |
