AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene063179


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063179.t1 MTR_3g110180 95.853 434 6 2 1 426 1 430 0.0 858
MS.gene063179.t1 MTR_3g110180 95.622 434 6 3 1 426 1 429 0.0 825
MS.gene063179.t1 MTR_1g004990 60.417 432 152 3 1 424 1 421 0.0 523
MS.gene063179.t1 MTR_6g087070 62.044 411 132 6 1 400 1 398 0.0 513
MS.gene063179.t1 MTR_8g102930 59.039 437 155 6 1 426 1 424 5.83e-177 501
MS.gene063179.t1 MTR_4g126010 64.162 346 109 3 1 337 1 340 1.68e-163 468
MS.gene063179.t1 MTR_2g099670 65.205 342 108 3 1 331 1 342 2.54e-163 468
MS.gene063179.t1 MTR_1g069720 66.352 318 99 1 1 310 1 318 4.24e-160 459
MS.gene063179.t1 MTR_1g042280 67.752 307 91 1 1 299 2 308 1.71e-157 452
MS.gene063179.t1 MTR_7g097160 65.312 320 103 1 1 312 1 320 6.66e-157 451
MS.gene063179.t1 MTR_2g039930 58.933 375 129 6 1 356 1 369 1.52e-156 451
MS.gene063179.t1 MTR_8g018310 64.179 335 103 4 1 327 1 326 2.33e-156 450
MS.gene063179.t1 MTR_8g018310 64.179 335 103 4 1 327 1 326 1.75e-155 446
MS.gene063179.t1 MTR_1g075870 65.015 323 97 2 1 315 2 316 2.20e-155 442
MS.gene063179.t1 MTR_1g075870 65.015 323 97 2 1 315 2 316 2.29e-154 445
MS.gene063179.t1 MTR_1g042280 70.149 268 80 0 32 299 9 276 9.31e-145 414
MS.gene063179.t1 MTR_0492s0030 65.000 300 95 2 1 290 1 300 1.96e-140 406
MS.gene063179.t1 MTR_0543s0020 65.000 300 95 2 1 290 1 300 1.96e-140 406
MS.gene063179.t1 MTR_2g099670 68.214 280 86 2 55 331 11 290 3.93e-140 407
MS.gene063179.t1 MTR_1g075870 68.045 266 77 1 50 315 2 259 4.18e-134 387
MS.gene063179.t1 MTR_2g039930 60.204 294 100 5 74 356 1 288 1.11e-122 362
MS.gene063179.t1 MTR_7g097160 68.927 177 55 0 136 312 25 201 2.61e-85 264
MS.gene063179.t1 MTR_3g110240 37.121 264 155 5 7 265 133 390 7.91e-51 182
MS.gene063179.t1 MTR_1g007150 36.364 264 157 5 7 265 136 393 7.45e-50 179
MS.gene063179.t1 MTR_7g006030 35.206 267 162 5 7 265 49 312 8.55e-50 178
MS.gene063179.t1 MTR_7g085540 36.296 270 162 5 7 269 159 425 2.59e-49 178
MS.gene063179.t1 MTR_1g116210 34.286 280 162 6 5 265 113 389 2.94e-47 172
MS.gene063179.t1 MTR_8g014050 34.444 270 161 7 7 265 140 404 1.47e-42 159
MS.gene063179.t1 MTR_7g116400 52.308 65 30 1 74 137 3 67 7.64e-16 72.8
MS.gene063179.t1 MTR_7g118020 26.728 217 133 5 6 205 141 348 7.21e-12 67.8
MS.gene063179.t1 MTR_4g086660 29.448 163 105 3 44 205 188 341 7.91e-12 67.4
MS.gene063179.t1 MTR_7g073520 32.800 125 71 3 99 221 250 363 8.38e-12 67.4
MS.gene063179.t1 MTR_8g079790 28.221 163 107 3 44 205 179 332 1.48e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063179.t1 AT4G28880 59.346 428 145 6 1 416 1 411 5.05e-178 503
MS.gene063179.t1 AT4G28880 59.346 428 145 6 1 416 1 411 5.05e-178 503
MS.gene063179.t1 AT4G28880 59.346 428 145 6 1 416 1 411 5.05e-178 503
MS.gene063179.t1 AT4G28880 59.346 428 145 6 1 416 1 411 5.05e-178 503
MS.gene063179.t1 AT4G28860 59.569 418 144 5 1 409 1 402 2.60e-176 499
MS.gene063179.t1 AT4G28860 71.384 318 83 1 1 310 1 318 7.65e-175 494
MS.gene063179.t1 AT4G26100 55.422 415 143 9 1 399 1 389 2.67e-159 457
MS.gene063179.t1 AT5G57015 64.308 325 106 2 1 315 1 325 1.34e-156 449
MS.gene063179.t1 AT1G72710 64.329 328 107 3 1 319 1 327 1.42e-156 451
MS.gene063179.t1 AT5G44100 69.360 297 83 1 1 289 1 297 1.84e-155 448
MS.gene063179.t1 AT5G44100 69.360 297 83 1 1 289 1 297 1.84e-155 448
MS.gene063179.t1 AT1G03930 67.340 297 89 1 1 289 1 297 1.97e-154 445
MS.gene063179.t1 AT4G28540 68.121 298 87 1 1 290 5 302 4.38e-154 445
MS.gene063179.t1 AT3G23340 64.688 320 104 2 1 312 1 319 5.93e-154 443
MS.gene063179.t1 AT2G19470 62.614 329 108 2 1 321 1 322 2.17e-153 441
MS.gene063179.t1 AT4G14340 64.062 320 106 2 1 312 7 325 6.82e-152 438
MS.gene063179.t1 AT4G14340 62.090 335 111 2 1 327 7 333 9.54e-152 434
MS.gene063179.t1 AT5G43320 68.013 297 87 1 1 289 1 297 2.26e-150 435
MS.gene063179.t1 AT3G23340 64.423 312 104 2 1 312 1 305 8.44e-150 432
MS.gene063179.t1 AT5G43320 61.383 347 122 3 1 339 1 343 1.44e-149 429
MS.gene063179.t1 AT5G43320 61.383 347 122 3 1 339 1 343 1.44e-149 429
MS.gene063179.t1 AT1G04440 67.340 297 89 1 1 289 1 297 2.20e-148 430
MS.gene063179.t1 AT4G08800 58.163 294 83 3 1 286 1 262 9.53e-121 353
MS.gene063179.t1 AT3G13670 35.424 271 164 5 7 269 149 416 1.51e-50 182
MS.gene063179.t1 AT2G25760 36.194 268 162 4 7 265 119 386 2.27e-50 181
MS.gene063179.t1 AT3G03940 36.296 270 162 5 7 269 152 418 2.44e-50 181
MS.gene063179.t1 AT2G25760 36.567 268 158 5 7 265 119 383 7.72e-50 179
MS.gene063179.t1 AT5G18190 35.662 272 165 5 7 271 142 410 3.00e-49 178
MS.gene063179.t1 AT5G18190 35.662 272 165 5 7 271 142 410 3.00e-49 178
MS.gene063179.t1 AT3G50530 30.061 163 104 3 44 205 199 352 2.48e-13 72.4
MS.gene063179.t1 AT3G49370 28.440 218 130 6 7 207 140 348 1.04e-11 67.4
MS.gene063179.t1 AT3G50530 28.495 186 108 6 44 205 199 383 3.84e-11 65.5
MS.gene063179.t1 AT5G24430 27.854 219 130 6 7 207 141 349 3.97e-11 65.5
MS.gene063179.t1 AT2G46700 29.082 196 118 5 11 205 172 347 9.51e-11 64.3

Find 98 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGTTCCTGTGGGCCTTTC+AGG 0.062348 3.3:-90629877 None:intergenic
TCAAACCTAGGTCGTGTATT+TGG 0.098979 3.3:+90629898 MS.gene063179:CDS
AGGAATATGCTTGCTTGTTT+TGG 0.195324 3.3:-90626613 None:intergenic
TATTCTGGTTATGGATCTTC+TGG 0.212846 3.3:+90626016 MS.gene063179:CDS
TTTGATCAAGATCCAGATTA+TGG 0.217415 3.3:+90628147 MS.gene063179:CDS
TTGGAGAAGACTGTATAATT+TGG 0.243957 3.3:-90625843 None:intergenic
GAATCCAGCTGCTTGAAATA+TGG 0.275973 3.3:-90629930 None:intergenic
CAAGCAAGCATATTCCTTAT+AGG 0.278492 3.3:+90626619 MS.gene063179:CDS
ATAACTTCCTAATGGGTATT+AGG 0.293154 3.3:+90626411 MS.gene063179:CDS
GCAGCTGGATTCCTTCTTTA+CGG 0.295950 3.3:+90629941 MS.gene063179:CDS
AGAGAGAATAAAAGTTTAAC+AGG 0.303019 3.3:+90627411 MS.gene063179:intron
CAAACCTAGGTCGTGTATTT+GGG 0.321394 3.3:+90629899 MS.gene063179:CDS
GCAAAGTCGCCGTGATGATT+TGG 0.329153 3.3:+90627557 MS.gene063179:CDS
ATACCCATTAGGAAGTTATC+TGG 0.331317 3.3:-90626407 None:intergenic
TAGGTTTATATTATTGATTT+CGG 0.339874 3.3:+90626567 MS.gene063179:intron
TGATGGAGATCATAATATTC+TGG 0.354764 3.3:+90626001 MS.gene063179:CDS
GGATCTTCTGGGACGTAGTC+TGG 0.355238 3.3:+90626028 MS.gene063179:CDS
AGCATTTAGATTCTTTAGAT+TGG 0.357090 3.3:-90629570 None:intergenic
CAAACCAGATAACTTCCTAA+TGG 0.358154 3.3:+90626403 MS.gene063179:CDS
CGCTTTAAGAATCCATAATC+TGG 0.362175 3.3:-90628159 None:intergenic
GTCCTTATGTACTTCTTAAG+AGG 0.366081 3.3:+90627594 MS.gene063179:CDS
AACAACAAAATATACCTATA+AGG 0.367234 3.3:-90626633 None:intergenic
CGTGATGATTTGGAGTCTAT+TGG 0.367974 3.3:+90627567 MS.gene063179:CDS
AGATCATAATATTCTGGTTA+TGG 0.373211 3.3:+90626007 MS.gene063179:CDS
TGAGGTCGTTGCCGTCAAAA+TGG 0.379560 3.3:+90625323 MS.gene063179:CDS
TTTAAGATTGGTCGCAAAAT+CGG 0.381240 3.3:+90625159 MS.gene063179:CDS
TATATTATTGATTTCGGACT+AGG 0.399991 3.3:+90626573 MS.gene063179:CDS
CACATTTGGACGATCAAGAT+TGG 0.402023 3.3:-90629528 None:intergenic
TTAGGCTGCACACGCACATT+TGG 0.429031 3.3:-90629542 None:intergenic
AAACCAGATAACTTCCTAAT+GGG 0.430261 3.3:+90626404 MS.gene063179:CDS
TTTATAACTTACTTTCTCCT+TGG 0.432685 3.3:-90625862 None:intergenic
AATCCAGCTGCTTGAAATAT+GGG 0.440658 3.3:-90629929 None:intergenic
ACTCCCATATTTCAAGCAGC+TGG 0.449190 3.3:+90629926 MS.gene063179:CDS
TGCTCCCGCAGAAGACAAAA+AGG 0.451965 3.3:-90626055 None:intergenic
TTTAGATTCTTTAGATTGGA+TGG 0.456240 3.3:-90629566 None:intergenic
GTTGGCGGAAAGTTTAAGAT+TGG 0.473575 3.3:+90625147 MS.gene063179:CDS
ATTCTGGTTATGGATCTTCT+GGG 0.476383 3.3:+90626017 MS.gene063179:CDS
ACTATGACAATTTATTCGAC+TGG 0.479555 3.3:+90628759 MS.gene063179:CDS
TGCAATACTCACTTAGGAAT+CGG 0.487644 3.3:+90627453 MS.gene063179:CDS
TTCTTTAGATTGGATGGCTT+AGG 0.488699 3.3:-90629560 None:intergenic
TTCCTCTTAAGAAGTACATA+AGG 0.490195 3.3:-90627596 None:intergenic
GAAGAAATTCGCCGTAAAGA+AGG 0.496549 3.3:-90629952 None:intergenic
CAGTCTACAACCAGTGGTTG+TGG 0.500770 3.3:+90629022 MS.gene063179:CDS
GTACCGCACCATCTCATAGT+TGG 0.509024 3.3:-90625978 None:intergenic
TCTAAATGCTAAGAATCATA+CGG 0.510015 3.3:+90629583 MS.gene063179:CDS
CGTGAGTTGTTCACTCGTGA+AGG 0.516158 3.3:+90628189 MS.gene063179:CDS
AATAGAGTACATGCATTCCA+AGG 0.528223 3.3:+90626361 MS.gene063179:CDS
GCATCCACAACTATTGTATG+AGG 0.532224 3.3:+90625820 MS.gene063179:CDS
GCAAGTTGCAATACTCACTT+AGG 0.533425 3.3:+90627447 MS.gene063179:CDS
AACATGGAGTGGGTCGTTGG+CGG 0.534619 3.3:+90625132 None:intergenic
ACCTAGGTTTGAAGTTCCTG+TGG 0.540684 3.3:-90629887 None:intergenic
TATTAGGAGAAAATCAAGTC+AGG 0.540941 3.3:+90626427 MS.gene063179:CDS
TTGGCCTCATACAATAGTTG+TGG 0.548570 3.3:-90625824 None:intergenic
CAATGATCCGTCCACTTCAT+CGG 0.549710 3.3:+90629819 MS.gene063179:CDS
TTATGTACTTCTTAAGAGGA+AGG 0.553282 3.3:+90627598 MS.gene063179:CDS
CTTTCAGACCCTGCCAAGGA+AGG 0.558293 3.3:-90627747 None:intergenic
ATGAGATGGTGCGGTACTGA+TGG 0.560221 3.3:+90625984 MS.gene063179:CDS
AACAACATGGAGTGGGTCGT+TGG 0.562685 3.3:+90625129 None:intergenic
TTTGATGTTAGCAGACCAGA+TGG 0.566646 3.3:+90626097 MS.gene063179:CDS
TGTAGGAGAAGAAGAGAACA+AGG 0.572961 3.3:+90625798 MS.gene063179:intron
CTAAATGCTAAGAATCATAC+GGG 0.574445 3.3:+90629584 MS.gene063179:CDS
GAATAAAAGTTTAACAGGGA+CGG 0.577039 3.3:+90627416 MS.gene063179:CDS
TTTGGGCAAAGCCGATGAAG+TGG 0.584387 3.3:-90629830 None:intergenic
TCTAAGCCTGAAAGGCCCAC+AGG 0.585651 3.3:+90629871 MS.gene063179:CDS
GCACTAGGTACGGCATCTGA+AGG 0.595661 3.3:-90628978 None:intergenic
TATTCCCAAATACACGACCT+AGG 0.597805 3.3:-90629903 None:intergenic
AAAGTAAGACGCAAACTCCA+CGG 0.599632 3.3:-90628103 None:intergenic
CATCCGCTAACAACATGGAG+TGG 0.601509 3.3:+90625121 None:intergenic
AAGTAAGACGCAAACTCCAC+GGG 0.604948 3.3:-90628102 None:intergenic
CCTAGGTTTGAAGTTCCTGT+GGG 0.606084 3.3:-90629886 None:intergenic
ACTAGGAACAGCACTAGGTA+CGG 0.607129 3.3:-90628988 None:intergenic
ACCACTGGTTGTAGACTGCT+AGG 0.607910 3.3:-90629017 None:intergenic
ATCAGCAGACGCAACAGACA+AGG 0.613053 3.3:+90628795 MS.gene063179:CDS
ATCCGCTAACAACATGGAGT+GGG 0.614583 3.3:+90625122 None:intergenic
TGGATCTTGATCAAATGTCA+AGG 0.615184 3.3:-90628139 None:intergenic
GTGGTATTCCAACTATGAGA+TGG 0.615515 3.3:+90625970 MS.gene063179:CDS
AGACTGCTAGGCACAGCACT+AGG 0.616647 3.3:-90629005 None:intergenic
AAGGAGACAAAAGCAATCAT+CGG 0.624317 3.3:+90628814 MS.gene063179:CDS
ATTGGTCGCAAAATCGGAAG+CGG 0.626522 3.3:+90625165 MS.gene063179:CDS
CTCAGAGGTGTCCATATCAG+AGG 0.626948 3.3:-90625304 None:intergenic
GGCAAAGCCGATGAAGTGGA+CGG 0.627991 3.3:-90629826 None:intergenic
AAAATGTCTCTAAGCCTGAA+AGG 0.629959 3.3:+90629863 MS.gene063179:CDS
CCCACAGGAACTTCAAACCT+AGG 0.637853 3.3:+90629886 MS.gene063179:CDS
AAATTATACAGTCTTCTCCA+AGG 0.638640 3.3:+90625845 MS.gene063179:CDS
GCCTAGCAGTCTACAACCAG+TGG 0.640292 3.3:+90629016 MS.gene063179:CDS
ACAGCTTTCAGACCCTGCCA+AGG 0.644712 3.3:-90627751 None:intergenic
ATTGAAAATGTATACCTCAG+TGG 0.646544 3.3:-90627824 None:intergenic
TCTTCTGGGACGTAGTCTGG+AGG 0.649427 3.3:+90626031 MS.gene063179:CDS
TCTGAAAGCTGTCACCAAAG+AGG 0.650261 3.3:+90627762 MS.gene063179:CDS
ACAGCACTAGGAACAGCACT+AGG 0.656993 3.3:-90628993 None:intergenic
ATAGAGTACATGCATTCCAA+GGG 0.660373 3.3:+90626362 MS.gene063179:CDS
GCTTTGCGAATCATATCCCG+TGG 0.663642 3.3:+90628086 MS.gene063179:CDS
CTCTGATATGGACACCTCTG+AGG 0.669495 3.3:+90625305 MS.gene063179:CDS
CAATAGACTCCAAATCATCA+CGG 0.670210 3.3:-90627566 None:intergenic
ATTCCAACTATGAGATGGTG+CGG 0.673968 3.3:+90625975 MS.gene063179:CDS
GAGAGAATAAAAGTTTAACA+GGG 0.702224 3.3:+90627412 MS.gene063179:intron
TTTGACGGCAACGACCTCAG+AGG 0.711927 3.3:-90625319 None:intergenic
GAAGTTATCAACTTCCACTG+AGG 0.761442 3.3:+90627810 MS.gene063179:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAATAATAATAATAACA+AGG - chr3.3:90629329-90629348 None:intergenic 10.0%
!!! ACATTTTGAATTTTAAAAAA+TGG + chr3.3:90627652-90627671 MS.gene063179:intron 10.0%
!!! ATATTTCTAATCTTTTATTA+TGG + chr3.3:90626667-90626686 MS.gene063179:intron 10.0%
!!! TATTATTATTATTTTTCACT+TGG + chr3.3:90629332-90629351 MS.gene063179:intron 10.0%
!! AAAAAAATGTCTAAATTTGA+TGG + chr3.3:90627023-90627042 MS.gene063179:intron 15.0%
!! AAATAAACTTCTTATTACAT+CGG - chr3.3:90628714-90628733 None:intergenic 15.0%
!! TGATATTAATTATTCTTCAT+TGG + chr3.3:90626857-90626876 MS.gene063179:intron 15.0%
!!! ATTCTTTTTAGGTAAATTTA+GGG + chr3.3:90627697-90627716 MS.gene063179:intron 15.0%
!!! TAAACAAATCAAGTATTTTT+AGG - chr3.3:90626728-90626747 None:intergenic 15.0%
!!! TAGGTTTATATTATTGATTT+CGG + chr3.3:90626567-90626586 MS.gene063179:intron 15.0%
!!! TTGTTTTGATTTTTTTTACT+TGG + chr3.3:90629751-90629770 MS.gene063179:intron 15.0%
!! AAAATTAAGAAGAAATCCAA+TGG - chr3.3:90629644-90629663 None:intergenic 20.0%
!! AACAACAAAATATACCTATA+AGG - chr3.3:90626636-90626655 None:intergenic 20.0%
!! AATAAACTTCTTATTACATC+GGG - chr3.3:90628713-90628732 None:intergenic 20.0%
!! AATAATAACAAGGAATTTGT+TGG - chr3.3:90629319-90629338 None:intergenic 20.0%
!! AATCAGGAAAGTTTAATAAT+CGG - chr3.3:90628920-90628939 None:intergenic 20.0%
!! ATCATAAAATGTTAGATAGT+TGG - chr3.3:90628503-90628522 None:intergenic 20.0%
!! ATGAAACATAAAAGGAATTA+TGG - chr3.3:90626510-90626529 None:intergenic 20.0%
!! CAAAATAGAATGAAATTTGT+GGG - chr3.3:90627521-90627540 None:intergenic 20.0%
!! GAAATTAAAAACTAGATTGA+GGG - chr3.3:90627873-90627892 None:intergenic 20.0%
!! GATGTAATAAGAAGTTTATT+TGG + chr3.3:90628713-90628732 MS.gene063179:intron 20.0%
!! GTAAGAAAATTACAATGAAT+GGG - chr3.3:90627634-90627653 None:intergenic 20.0%
!! TAAGACATATGAAACATAAA+AGG - chr3.3:90626518-90626537 None:intergenic 20.0%
!! TAGACCATAAAAATGTTTAA+AGG - chr3.3:90628858-90628877 None:intergenic 20.0%
!! TGAAACATAAAAGGAATTAT+GGG - chr3.3:90626509-90626528 None:intergenic 20.0%
!! TGTAAGAAAATTACAATGAA+TGG - chr3.3:90627635-90627654 None:intergenic 20.0%
!! TTTAAGTAATTACTGTCAAT+TGG + chr3.3:90628242-90628261 MS.gene063179:intron 20.0%
!!! AACAATATTAAGAGCTTTTA+AGG + chr3.3:90627948-90627967 MS.gene063179:intron 20.0%
!!! AACATTAAAGTATTAACGTA+AGG - chr3.3:90627100-90627119 None:intergenic 20.0%
!!! AAGTTATAAAAGAAGCATTT+GGG + chr3.3:90625875-90625894 MS.gene063179:intron 20.0%
!!! AATTTTTGGATATAGAGTAA+TGG - chr3.3:90628541-90628560 None:intergenic 20.0%
!!! ACATTAAAGTATTAACGTAA+GGG - chr3.3:90627099-90627118 None:intergenic 20.0%
!!! ATATCCAAAAATTCATGTTT+TGG + chr3.3:90628548-90628567 MS.gene063179:intron 20.0%
!!! ATGATAATTTGCTTATTAGT+TGG + chr3.3:90628296-90628315 MS.gene063179:intron 20.0%
!!! ATGATATTAAATATGGCTTT+TGG + chr3.3:90626182-90626201 MS.gene063179:intron 20.0%
!!! ATTTCCAAAACATGAATTTT+TGG - chr3.3:90628555-90628574 None:intergenic 20.0%
!!! CATTCTTTTTAGGTAAATTT+AGG + chr3.3:90627696-90627715 MS.gene063179:intron 20.0%
!!! TAAGTTATAAAAGAAGCATT+TGG + chr3.3:90625874-90625893 MS.gene063179:intron 20.0%
!!! TAGGTATTTTTTGCTTATAA+TGG + chr3.3:90627150-90627169 MS.gene063179:intron 20.0%
!!! TCATGTTTTTACATGTTATA+AGG + chr3.3:90626691-90626710 MS.gene063179:intron 20.0%
!!! TCATTTGGTGAAATTTATAT+AGG + chr3.3:90625189-90625208 MS.gene063179:intron 20.0%
!!! TGAAAGTGTGTAAAAAATAA+AGG - chr3.3:90625708-90625727 None:intergenic 20.0%
!!! TGAACCTTTAAACATTTTTA+TGG + chr3.3:90628851-90628870 MS.gene063179:intron 20.0%
!!! TTCCTTGATGATATTAAATA+TGG + chr3.3:90626175-90626194 MS.gene063179:intron 20.0%
! AAAACTGCTACTATATTGAT+AGG - chr3.3:90626229-90626248 None:intergenic 25.0%
! AAGAAAGGTTAAATACTTAG+TGG - chr3.3:90628364-90628383 None:intergenic 25.0%
! AGAGAGAATAAAAGTTTAAC+AGG + chr3.3:90627411-90627430 MS.gene063179:intron 25.0%
! AGCATTTAGATTCTTTAGAT+TGG - chr3.3:90629573-90629592 None:intergenic 25.0%
! AGCCATATTTAATATCATCA+AGG - chr3.3:90626180-90626199 None:intergenic 25.0%
! AGTTTAACTAGTCAAGTTAA+TGG + chr3.3:90627356-90627375 MS.gene063179:intron 25.0%
! ATAAACTTCTTATTACATCG+GGG - chr3.3:90628712-90628731 None:intergenic 25.0%
! ATCAGGAAAGTTTAATAATC+GGG - chr3.3:90628919-90628938 None:intergenic 25.0%
! CACAAAATTTGCATAACTAA+AGG - chr3.3:90628393-90628412 None:intergenic 25.0%
! CATTGGATAACAGTTAATAA+AGG + chr3.3:90626874-90626893 MS.gene063179:intron 25.0%
! CCAAAATAGAATGAAATTTG+TGG - chr3.3:90627522-90627541 None:intergenic 25.0%
! GAGAGAATAAAAGTTTAACA+GGG + chr3.3:90627412-90627431 MS.gene063179:intron 25.0%
! GGAAATTAAAAACTAGATTG+AGG - chr3.3:90627874-90627893 None:intergenic 25.0%
! GTTAATACTTTAATGTTGTG+AGG + chr3.3:90627103-90627122 MS.gene063179:intron 25.0%
! TAAATTCTAACTCATTCTAC+TGG - chr3.3:90629183-90629202 None:intergenic 25.0%
! TACAAAATGTTGATCTCATT+AGG - chr3.3:90625468-90625487 None:intergenic 25.0%
! TCTAAATGCTAAGAATCATA+CGG + chr3.3:90629583-90629602 MS.gene063179:CDS 25.0%
! TCTAAATTCATTATCTTCAC+TGG + chr3.3:90626458-90626477 MS.gene063179:intron 25.0%
! TGTGTAAAAAATAAAGGTCA+TGG - chr3.3:90625702-90625721 None:intergenic 25.0%
! TTATCAAGGTCAAAACATTA+GGG - chr3.3:90627383-90627402 None:intergenic 25.0%
! TTCTATTCAACATTCATATG+CGG + chr3.3:90625253-90625272 MS.gene063179:intron 25.0%
! TTTAGATTCTTTAGATTGGA+TGG - chr3.3:90629569-90629588 None:intergenic 25.0%
! TTTATAACTTACTTTCTCCT+TGG - chr3.3:90625865-90625884 None:intergenic 25.0%
! TTTATCAAGGTCAAAACATT+AGG - chr3.3:90627384-90627403 None:intergenic 25.0%
!! AAAGAAACAAACCATTTTGA+CGG - chr3.3:90625337-90625356 None:intergenic 25.0%
!! AGATCATAATATTCTGGTTA+TGG + chr3.3:90626007-90626026 MS.gene063179:CDS 25.0%
!! ATCAATTGCACATTCTTTTT+AGG + chr3.3:90627686-90627705 MS.gene063179:intron 25.0%
!! ATCTCAAATAATTCCTTTTC+CGG + chr3.3:90627283-90627302 MS.gene063179:intron 25.0%
!! ATGAGATCAACATTTTGTAT+CGG + chr3.3:90625469-90625488 MS.gene063179:intron 25.0%
!! CCACAAATTTCATTCTATTT+TGG + chr3.3:90627519-90627538 MS.gene063179:intron 25.0%
!! TCTATTTACAAAAGTTCTAG+AGG + chr3.3:90626752-90626771 MS.gene063179:intron 25.0%
!! TTTTAATGCTCATTGCAAAA+CGG + chr3.3:90629211-90629230 MS.gene063179:intron 25.0%
!!! ATTATTTTTCACTTGGAAGT+TGG + chr3.3:90629339-90629358 MS.gene063179:intron 25.0%
!!! CTGCAATTTGTTACATTTAT+AGG + chr3.3:90626548-90626567 MS.gene063179:intron 25.0%
!!! GCTACATTTCTTTATTTTGT+AGG + chr3.3:90625781-90625800 MS.gene063179:intron 25.0%
!!! TATATTATTGATTTCGGACT+AGG + chr3.3:90626573-90626592 MS.gene063179:CDS 25.0%
!!! TGAATTATTGATTCCTGAAA+AGG - chr3.3:90629480-90629499 None:intergenic 25.0%
!!! TGCTTGCTTTATTTTTCAAT+TGG + chr3.3:90626143-90626162 MS.gene063179:intron 25.0%
AAACCAGATAACTTCCTAAT+GGG + chr3.3:90626404-90626423 MS.gene063179:CDS 30.0%
AAATTATACAGTCTTCTCCA+AGG + chr3.3:90625845-90625864 MS.gene063179:CDS 30.0%
AACGAATTCTGTTCAATTGT+GGG + chr3.3:90629101-90629120 MS.gene063179:intron 30.0%
AACTAAAGGAGAAAGAAGAA+AGG - chr3.3:90628379-90628398 None:intergenic 30.0%
ACATAAAAGGAATTATGGGA+CGG - chr3.3:90626505-90626524 None:intergenic 30.0%
ACCATAATAAGTTTGGAAGT+AGG + chr3.3:90627131-90627150 MS.gene063179:intron 30.0%
ACCTACTTCCAAACTTATTA+TGG - chr3.3:90627135-90627154 None:intergenic 30.0%
ACTATGACAATTTATTCGAC+TGG + chr3.3:90628759-90628778 MS.gene063179:CDS 30.0%
AGATTACACAGATTACAAGT+TGG - chr3.3:90627267-90627286 None:intergenic 30.0%
ATGTACTAGTAACCAATCTT+AGG + chr3.3:90628639-90628658 MS.gene063179:intron 30.0%
ATTAAGACATGTACATCATC+AGG - chr3.3:90629455-90629474 None:intergenic 30.0%
ATTCTTCATTTGTGTTTGCT+TGG + chr3.3:90628594-90628613 MS.gene063179:intron 30.0%
ATTGAAAATGTATACCTCAG+TGG - chr3.3:90627827-90627846 None:intergenic 30.0%
ATTTGGATCTCATATGGAAA+AGG + chr3.3:90625901-90625920 MS.gene063179:intron 30.0%
CATGTCTTAGCAATTAATAG+AGG - chr3.3:90629677-90629696 None:intergenic 30.0%
CTAAATGCTAAGAATCATAC+GGG + chr3.3:90629584-90629603 MS.gene063179:CDS 30.0%
CTCTATTAATTGCTAAGACA+TGG + chr3.3:90629675-90629694 MS.gene063179:intron 30.0%
CTCTCTGTATAAGTTTATCA+AGG - chr3.3:90627397-90627416 None:intergenic 30.0%
CTTCTTATGTTCATACAATG+AGG + chr3.3:90629068-90629087 MS.gene063179:intron 30.0%
GAAGATAAATACAACACAAG+AGG - chr3.3:90628687-90628706 None:intergenic 30.0%
GAATAAAAGTTTAACAGGGA+CGG + chr3.3:90627416-90627435 MS.gene063179:CDS 30.0%
GCAATTAATAGAGGATATAG+AGG - chr3.3:90629668-90629687 None:intergenic 30.0%
GTGATGAATGATAAAGAGAT+GGG - chr3.3:90625371-90625390 None:intergenic 30.0%
TAAACTTATACTTGCTTGCT+AGG + chr3.3:90625670-90625689 MS.gene063179:intron 30.0%
TAAACTTCTTATTACATCGG+GGG - chr3.3:90628711-90628730 None:intergenic 30.0%
TATTAATTGCTAAGACATGG+TGG + chr3.3:90629678-90629697 MS.gene063179:intron 30.0%
TATTAGGAGAAAATCAAGTC+AGG + chr3.3:90626427-90626446 MS.gene063179:CDS 30.0%
TGATCTATTCCTTAGATTAC+CGG - chr3.3:90625439-90625458 None:intergenic 30.0%
TGATGGAGATCATAATATTC+TGG + chr3.3:90626001-90626020 MS.gene063179:CDS 30.0%
TGGTAAATATCTGTCAATCT+TGG - chr3.3:90629299-90629318 None:intergenic 30.0%
TGTACTAGTAACCAATCTTA+GGG + chr3.3:90628640-90628659 MS.gene063179:intron 30.0%
TGTGTGACATTAAAACAATC+TGG - chr3.3:90626793-90626812 None:intergenic 30.0%
TTACCAAAAACTTCTGTAAC+TGG + chr3.3:90626933-90626952 MS.gene063179:intron 30.0%
TTACTGTCAATTGGACATAT+AGG + chr3.3:90628251-90628270 MS.gene063179:intron 30.0%
TTATGTACTTCTTAAGAGGA+AGG + chr3.3:90627598-90627617 MS.gene063179:CDS 30.0%
TTGGAGAAGACTGTATAATT+TGG - chr3.3:90625846-90625865 None:intergenic 30.0%
TTTGATCAAGATCCAGATTA+TGG + chr3.3:90628147-90628166 MS.gene063179:CDS 30.0%
! AAATTTAGGGCTTGACTATA+TGG + chr3.3:90627710-90627729 MS.gene063179:intron 30.0%
! AGCTTGATAACATGGAATTA+GGG + chr3.3:90625603-90625622 MS.gene063179:intron 30.0%
! ATAACTTCCTAATGGGTATT+AGG + chr3.3:90626411-90626430 MS.gene063179:CDS 30.0%
! ATGAATGTAGCTTGATAACA+TGG + chr3.3:90625595-90625614 MS.gene063179:intron 30.0%
! ATTTTCTCCTAATACCCATT+AGG - chr3.3:90626421-90626440 None:intergenic 30.0%
! CATGTCTTAATTTCCTTTTC+AGG + chr3.3:90629464-90629483 MS.gene063179:intron 30.0%
! CTTGTCATATTTTTCCTCTT+TGG - chr3.3:90627779-90627798 None:intergenic 30.0%
! GATCATTGCCTATTTTCTTA+TGG + chr3.3:90626959-90626978 MS.gene063179:intron 30.0%
! TAAAACAATCTGGTTTCATG+TGG - chr3.3:90626783-90626802 None:intergenic 30.0%
! TAGCTTGATAACATGGAATT+AGG + chr3.3:90625602-90625621 MS.gene063179:intron 30.0%
! TGAGATCAACATTTTGTATC+GGG + chr3.3:90625470-90625489 MS.gene063179:intron 30.0%
! TGCTTATAATGGAGTTTAGA+GGG + chr3.3:90627161-90627180 MS.gene063179:intron 30.0%
! TGTATAATTTGTGAATGCTC+CGG + chr3.3:90625417-90625436 MS.gene063179:intron 30.0%
! TTCCTCTTAAGAAGTACATA+AGG - chr3.3:90627599-90627618 None:intergenic 30.0%
! TTGCTTATAATGGAGTTTAG+AGG + chr3.3:90627160-90627179 MS.gene063179:intron 30.0%
! TTTAAGATTGGTCGCAAAAT+CGG + chr3.3:90625159-90625178 MS.gene063179:CDS 30.0%
!! AAGAAGCATTTGGGTATATT+TGG + chr3.3:90625884-90625903 MS.gene063179:intron 30.0%
!! AATAGTCATTGATTCAAGTG+AGG - chr3.3:90628953-90628972 None:intergenic 30.0%
!! ACATTTTCTGCAGTTGATTT+GGG - chr3.3:90629850-90629869 None:intergenic 30.0%
!! CTTTTAAGGATTGCTATTAC+TGG + chr3.3:90627962-90627981 MS.gene063179:intron 30.0%
!!! AGTTTTGTTACAGTAACTTG+AGG - chr3.3:90629503-90629522 None:intergenic 30.0%
AAAAACTAGATTGAGGGTCA+GGG - chr3.3:90627867-90627886 None:intergenic 35.0%
AAAATGTCTCTAAGCCTGAA+AGG + chr3.3:90629863-90629882 MS.gene063179:CDS 35.0%
AAGGAGACAAAAGCAATCAT+CGG + chr3.3:90628814-90628833 MS.gene063179:CDS 35.0%
AATAGAGTACATGCATTCCA+AGG + chr3.3:90626361-90626380 MS.gene063179:CDS 35.0%
AATCCAGCTGCTTGAAATAT+GGG - chr3.3:90629932-90629951 None:intergenic 35.0%
ACATACTGCATACAGTACAT+AGG + chr3.3:90628434-90628453 MS.gene063179:intron 35.0%
AGTCTTTCTTAGTTGAACAG+CGG - chr3.3:90629390-90629409 None:intergenic 35.0%
AGTTTAAACCCTGATCATCA+AGG + chr3.3:90625548-90625567 MS.gene063179:intron 35.0%
ATACCCATTAGGAAGTTATC+TGG - chr3.3:90626410-90626429 None:intergenic 35.0%
ATAGAGTACATGCATTCCAA+GGG + chr3.3:90626362-90626381 MS.gene063179:CDS 35.0%
ATAGTTCCAGGTATTCATGT+AGG - chr3.3:90627922-90627941 None:intergenic 35.0%
ATCGAAAAGTTACCTCTTGT+AGG + chr3.3:90626251-90626270 MS.gene063179:intron 35.0%
ATTGTTTCGTCAATAGTTCC+AGG - chr3.3:90627934-90627953 None:intergenic 35.0%
CAAACCAGATAACTTCCTAA+TGG + chr3.3:90626403-90626422 MS.gene063179:CDS 35.0%
CAAGCAAGCATATTCCTTAT+AGG + chr3.3:90626619-90626638 MS.gene063179:CDS 35.0%
CAAGGATGCCATAAGAAAAT+AGG - chr3.3:90626970-90626989 None:intergenic 35.0%
CAATAGACTCCAAATCATCA+CGG - chr3.3:90627569-90627588 None:intergenic 35.0%
CATAAAAGGAATTATGGGAC+GGG - chr3.3:90626504-90626523 None:intergenic 35.0%
CGTGATGAATGATAAAGAGA+TGG - chr3.3:90625372-90625391 None:intergenic 35.0%
CTCAACAACTATTGTGTACA+AGG + chr3.3:90625738-90625757 MS.gene063179:intron 35.0%
CTCAACTGATTAGGGTTAAA+AGG + chr3.3:90625511-90625530 MS.gene063179:intron 35.0%
CTCATTGCAAAACGGAAAAA+AGG + chr3.3:90629219-90629238 MS.gene063179:intron 35.0%
CTTCAATGATAAAACCTCTC+AGG - chr3.3:90628016-90628035 None:intergenic 35.0%
GAACGAATTCTGTTCAATTG+TGG + chr3.3:90629100-90629119 MS.gene063179:intron 35.0%
GGAGATGACCATAATAAGTT+TGG + chr3.3:90627124-90627143 MS.gene063179:intron 35.0%
GGGTATATTTGGATCTCATA+TGG + chr3.3:90625895-90625914 MS.gene063179:intron 35.0%
GTCCTTATGTACTTCTTAAG+AGG + chr3.3:90627594-90627613 MS.gene063179:CDS 35.0%
GTCTCTATGTAAAAATCCCT+TGG - chr3.3:90626381-90626400 None:intergenic 35.0%
GTGAGGAAGAGAATAAAATC+AGG - chr3.3:90628936-90628955 None:intergenic 35.0%
GTGCTTAAGTAGAGATATTC+TGG - chr3.3:90628416-90628435 None:intergenic 35.0%
TAAAAACTAGATTGAGGGTC+AGG - chr3.3:90627868-90627887 None:intergenic 35.0%
TACAAGCTTAGCTGTAAAGA+AGG - chr3.3:90627497-90627516 None:intergenic 35.0%
TCATGTAGGTCAAAGTATGA+GGG - chr3.3:90627908-90627927 None:intergenic 35.0%
TGATGATCAGGGTTTAAACT+CGG - chr3.3:90625548-90625567 None:intergenic 35.0%
TGCAATACTCACTTAGGAAT+CGG + chr3.3:90627453-90627472 MS.gene063179:CDS 35.0%
TGCATTTACTGGAATGCATA+TGG + chr3.3:90628881-90628900 MS.gene063179:intron 35.0%
TGGATCTTGATCAAATGTCA+AGG - chr3.3:90628142-90628161 None:intergenic 35.0%
TTAGGGTTAAAAGGAGTTTG+AGG + chr3.3:90625520-90625539 MS.gene063179:intron 35.0%
TTATAACTGCACAGTAGTAC+TGG - chr3.3:90627000-90627019 None:intergenic 35.0%
TTCATGTAGGTCAAAGTATG+AGG - chr3.3:90627909-90627928 None:intergenic 35.0%
TTCTTTAGATTGGATGGCTT+AGG - chr3.3:90629563-90629582 None:intergenic 35.0%
TTTGGCTGAATTTAATGAGC+AGG + chr3.3:90628731-90628750 MS.gene063179:intron 35.0%
! ACACCAGTTACAGAAGTTTT+TGG - chr3.3:90626939-90626958 None:intergenic 35.0%
! ACATTTTGTATCGGGTTTGA+TGG + chr3.3:90625478-90625497 MS.gene063179:intron 35.0%
! AGGAATATGCTTGCTTGTTT+TGG - chr3.3:90626616-90626635 None:intergenic 35.0%
! ATTCTGGTTATGGATCTTCT+GGG + chr3.3:90626017-90626036 MS.gene063179:CDS 35.0%
! CATTTTGTATCGGGTTTGAT+GGG + chr3.3:90625479-90625498 MS.gene063179:intron 35.0%
! CTTATAATGGAGTTTAGAGG+GGG + chr3.3:90627163-90627182 MS.gene063179:intron 35.0%
! CTTCTGAGAACAAGGAATAT+GGG - chr3.3:90628067-90628086 None:intergenic 35.0%
! GACATTTTCTGCAGTTGATT+TGG - chr3.3:90629851-90629870 None:intergenic 35.0%
! GCTTATAATGGAGTTTAGAG+GGG + chr3.3:90627162-90627181 MS.gene063179:intron 35.0%
! GTCAGGGGTTAATCATTTTA+TGG - chr3.3:90627851-90627870 None:intergenic 35.0%
! TATTCTGGTTATGGATCTTC+TGG + chr3.3:90626016-90626035 MS.gene063179:CDS 35.0%
! TGGAATTAGGGATGTGTTTT+TGG + chr3.3:90625615-90625634 MS.gene063179:intron 35.0%
! TTCTGATTCGTCTTACACTT+CGG + chr3.3:90625940-90625959 MS.gene063179:intron 35.0%
!! CGCTTTAAGAATCCATAATC+TGG - chr3.3:90628162-90628181 None:intergenic 35.0%
!! GGAATATGCTTGCTTGTTTT+GGG - chr3.3:90626615-90626634 None:intergenic 35.0%
!! TTTTGCATTTTAGCCTTCCT+TGG + chr3.3:90627734-90627753 MS.gene063179:intron 35.0%
!!! GAATATGCTTGCTTGTTTTG+GGG - chr3.3:90626614-90626633 None:intergenic 35.0%
!!! TGTTTTAGCCTGTTGAATGT+AGG + chr3.3:90628320-90628339 MS.gene063179:intron 35.0%
AAAACTAGATTGAGGGTCAG+GGG - chr3.3:90627866-90627885 None:intergenic 40.0%
AAAATCGGAAGCGGTTCATT+TGG + chr3.3:90625174-90625193 MS.gene063179:intron 40.0%
AAAGTAAGACGCAAACTCCA+CGG - chr3.3:90628106-90628125 None:intergenic 40.0%
AATCAGAACTCAGAAGAGTC+CGG - chr3.3:90627305-90627324 None:intergenic 40.0%
AGAAGAAATCCAATGGCAGT+CGG - chr3.3:90629637-90629656 None:intergenic 40.0%
AGCTAGTACGAATCAGCATT+AGG - chr3.3:90625764-90625783 None:intergenic 40.0%
ATGAATCAGTGGTTACCATC+TGG - chr3.3:90626115-90626134 None:intergenic 40.0%
ATTCCAACTATGAGATGGTG+CGG + chr3.3:90625975-90625994 MS.gene063179:CDS 40.0%
CAAACCTAGGTCGTGTATTT+GGG + chr3.3:90629899-90629918 MS.gene063179:CDS 40.0%
CAATGATAAAACCTCTCAGG+AGG - chr3.3:90628013-90628032 None:intergenic 40.0%
CACATTTGGACGATCAAGAT+TGG - chr3.3:90629531-90629550 None:intergenic 40.0%
CTTTGACCTACATGAATACC+TGG + chr3.3:90627913-90627932 MS.gene063179:intron 40.0%
GAAGAAATTCGCCGTAAAGA+AGG - chr3.3:90629955-90629974 None:intergenic 40.0%
GAAGTTATCAACTTCCACTG+AGG + chr3.3:90627810-90627829 MS.gene063179:CDS 40.0%
GAATCCAGCTGCTTGAAATA+TGG - chr3.3:90629933-90629952 None:intergenic 40.0%
GCAAGTTGCAATACTCACTT+AGG + chr3.3:90627447-90627466 MS.gene063179:CDS 40.0%
GCAATCCAGATATGAATCAG+TGG - chr3.3:90626126-90626145 None:intergenic 40.0%
GCATCCACAACTATTGTATG+AGG + chr3.3:90625820-90625839 MS.gene063179:CDS 40.0%
GTGGTATTCCAACTATGAGA+TGG + chr3.3:90625970-90625989 MS.gene063179:CDS 40.0%
GTGGTTGTGGAAAAACATAC+AGG + chr3.3:90629035-90629054 MS.gene063179:CDS 40.0%
TAATGCCTCCTACATTCAAC+AGG - chr3.3:90628331-90628350 None:intergenic 40.0%
TAATTTCTTCCGACTGCCAT+TGG + chr3.3:90629625-90629644 MS.gene063179:intron 40.0%
TACTCTATTCTCGAAAGCTG+TGG - chr3.3:90626350-90626369 None:intergenic 40.0%
TATTCCCAAATACACGACCT+AGG - chr3.3:90629906-90629925 None:intergenic 40.0%
TCAAACCTAGGTCGTGTATT+TGG + chr3.3:90629898-90629917 MS.gene063179:CDS 40.0%
TGTAGGAGAAGAAGAGAACA+AGG + chr3.3:90625798-90625817 MS.gene063179:intron 40.0%
TTCACTTGGAAGTTGGAACT+TGG + chr3.3:90629346-90629365 MS.gene063179:intron 40.0%
TTGGCCTCATACAATAGTTG+TGG - chr3.3:90625827-90625846 None:intergenic 40.0%
TTGGGTAGCTCAACTGATTA+GGG + chr3.3:90625503-90625522 MS.gene063179:intron 40.0%
TTGTTCTCAAGACCACATGT+AGG - chr3.3:90628478-90628497 None:intergenic 40.0%
TTTAGCCTGTTGAATGTAGG+AGG + chr3.3:90628323-90628342 MS.gene063179:intron 40.0%
TTTGATGTTAGCAGACCAGA+TGG + chr3.3:90626097-90626116 MS.gene063179:CDS 40.0%
TTTGGGTAGCTCAACTGATT+AGG + chr3.3:90625502-90625521 MS.gene063179:intron 40.0%
! AGTAGCTACCTTGATGATCA+GGG - chr3.3:90625559-90625578 None:intergenic 40.0%
! ATGGTCTAGCTTGCATTTAC+TGG + chr3.3:90628870-90628889 MS.gene063179:intron 40.0%
! CGTCTTACACTTCGGATTTT+AGG + chr3.3:90625948-90625967 MS.gene063179:intron 40.0%
! CGTGATGATTTGGAGTCTAT+TGG + chr3.3:90627567-90627586 MS.gene063179:CDS 40.0%
! CTTACACTTCGGATTTTAGG+TGG + chr3.3:90625951-90625970 MS.gene063179:intron 40.0%
! GCTTCTGAGAACAAGGAATA+TGG - chr3.3:90628068-90628087 None:intergenic 40.0%
! GTATGTTTTTCCACAACCAC+TGG - chr3.3:90629035-90629054 None:intergenic 40.0%
! GTTGCGTCTGCTGATATTTT+AGG - chr3.3:90628790-90628809 None:intergenic 40.0%
! GTTGGCGGAAAGTTTAAGAT+TGG + chr3.3:90625147-90625166 MS.gene063179:CDS 40.0%
! TAGGGTTTCAGAGTTGTTTC+TGG + chr3.3:90628658-90628677 MS.gene063179:intron 40.0%
! TAGTAGCTACCTTGATGATC+AGG - chr3.3:90625560-90625579 None:intergenic 40.0%
! TCGGACTAGGAAAAAGATAC+CGG + chr3.3:90626586-90626605 MS.gene063179:CDS 40.0%
! TTTGAGATGAGACCTACATG+TGG + chr3.3:90628463-90628482 MS.gene063179:intron 40.0%
!! AGTAGTACTGGTACACATCA+AGG - chr3.3:90626988-90627007 None:intergenic 40.0%
!! ATAGGAGCATTTCCTACAAG+AGG - chr3.3:90626266-90626285 None:intergenic 40.0%
!! CAACTCTGAAACCCTAAGAT+TGG - chr3.3:90628654-90628673 None:intergenic 40.0%
!! CGTCTGCTGATATTTTAGGA+TGG - chr3.3:90628786-90628805 None:intergenic 40.0%
!! GGTAACCACTGATTCATATC+TGG + chr3.3:90626118-90626137 MS.gene063179:intron 40.0%
!!! AGAGGGGGTATTTTGTGAAA+TGG + chr3.3:90627178-90627197 MS.gene063179:intron 40.0%
AACTCAGAAGAGTCCGGAAA+AGG - chr3.3:90627299-90627318 None:intergenic 45.0%
AAGTAAGACGCAAACTCCAC+GGG - chr3.3:90628105-90628124 None:intergenic 45.0%
ACTAGGAACAGCACTAGGTA+CGG - chr3.3:90628991-90629010 None:intergenic 45.0%
ACTCCCATATTTCAAGCAGC+TGG + chr3.3:90629926-90629945 MS.gene063179:CDS 45.0%
AGGAAATGCTCCTATCCACA+GGG + chr3.3:90626271-90626290 MS.gene063179:intron 45.0%
AGTATGAGGGCGAGAAGAAA+AGG - chr3.3:90627895-90627914 None:intergenic 45.0%
ATAAAACCTCTCAGGAGGAG+GGG - chr3.3:90628008-90628027 None:intergenic 45.0%
ATTGGTCGCAAAATCGGAAG+CGG + chr3.3:90625165-90625184 MS.gene063179:CDS 45.0%
CAATGATCCGTCCACTTCAT+CGG + chr3.3:90629819-90629838 MS.gene063179:CDS 45.0%
CATTGAAAGTCCCTGTGGAT+AGG - chr3.3:90626284-90626303 None:intergenic 45.0%
GATAAAACCTCTCAGGAGGA+GGG - chr3.3:90628009-90628028 None:intergenic 45.0%
GCAGCTGGATTCCTTCTTTA+CGG + chr3.3:90629941-90629960 MS.gene063179:CDS 45.0%
GCTTTCATTGAAAGTCCCTG+TGG - chr3.3:90626289-90626308 None:intergenic 45.0%
GTGAATGCTCCGGTAATCTA+AGG + chr3.3:90625427-90625446 MS.gene063179:intron 45.0%
TAGGAAATGCTCCTATCCAC+AGG + chr3.3:90626270-90626289 MS.gene063179:intron 45.0%
TCTGAAAGCTGTCACCAAAG+AGG + chr3.3:90627762-90627781 MS.gene063179:CDS 45.0%
TGATAAAACCTCTCAGGAGG+AGG - chr3.3:90628010-90628029 None:intergenic 45.0%
! ACCTAGGTTTGAAGTTCCTG+TGG - chr3.3:90629890-90629909 None:intergenic 45.0%
! AGGACCTTTTTGTCTTCTGC+GGG + chr3.3:90626051-90626070 MS.gene063179:CDS 45.0%
! CCTAGGTTTGAAGTTCCTGT+GGG - chr3.3:90629889-90629908 None:intergenic 45.0%
! CGGACTAGGAAAAAGATACC+GGG + chr3.3:90626587-90626606 MS.gene063179:CDS 45.0%
! GAGGACCTTTTTGTCTTCTG+CGG + chr3.3:90626050-90626069 MS.gene063179:CDS 45.0%
! GATGGACTCAAAGTGTCTAC+TGG + chr3.3:90627041-90627060 MS.gene063179:intron 45.0%
! GCTTTTTGCAGCCTCTGATA+TGG + chr3.3:90625293-90625312 MS.gene063179:intron 45.0%
! TCGCAAAGCTTCTGAGAACA+AGG - chr3.3:90628075-90628094 None:intergenic 45.0%
!! CATTTTAGCCTTCCTTGGCA+GGG + chr3.3:90627739-90627758 MS.gene063179:intron 45.0%
!! GTATCGGGTTTGATGGGTTT+GGG + chr3.3:90625485-90625504 MS.gene063179:intron 45.0%
!! TGTATCGGGTTTGATGGGTT+TGG + chr3.3:90625484-90625503 MS.gene063179:intron 45.0%
ACAGCACTAGGAACAGCACT+AGG - chr3.3:90628996-90629015 None:intergenic 50.0%
ATCAGCAGACGCAACAGACA+AGG + chr3.3:90628795-90628814 MS.gene063179:CDS 50.0%
CAGTCTACAACCAGTGGTTG+TGG + chr3.3:90629022-90629041 MS.gene063179:CDS 50.0%
CCCACAGGAACTTCAAACCT+AGG + chr3.3:90629886-90629905 MS.gene063179:CDS 50.0%
CGTGAGTTGTTCACTCGTGA+AGG + chr3.3:90628189-90628208 MS.gene063179:CDS 50.0%
CTCTGATATGGACACCTCTG+AGG + chr3.3:90625305-90625324 MS.gene063179:CDS 50.0%
GCAAAGTCGCCGTGATGATT+TGG + chr3.3:90627557-90627576 MS.gene063179:CDS 50.0%
GCTTTGCGAATCATATCCCG+TGG + chr3.3:90628086-90628105 MS.gene063179:CDS 50.0%
GTACCGCACCATCTCATAGT+TGG - chr3.3:90625981-90626000 None:intergenic 50.0%
TGAGGTCGTTGCCGTCAAAA+TGG + chr3.3:90625323-90625342 MS.gene063179:CDS 50.0%
TGCTCCCGCAGAAGACAAAA+AGG - chr3.3:90626058-90626077 None:intergenic 50.0%
TTAGGCTGCACACGCACATT+TGG - chr3.3:90629545-90629564 None:intergenic 50.0%
TTTGGGCAAAGCCGATGAAG+TGG - chr3.3:90629833-90629852 None:intergenic 50.0%
! ACCACTGGTTGTAGACTGCT+AGG - chr3.3:90629020-90629039 None:intergenic 50.0%
! ATGAGATGGTGCGGTACTGA+TGG + chr3.3:90625984-90626003 MS.gene063179:CDS 50.0%
!! CTCAGAGGTGTCCATATCAG+AGG - chr3.3:90625307-90625326 None:intergenic 50.0%
!! GCATTTTAGCCTTCCTTGGC+AGG + chr3.3:90627738-90627757 MS.gene063179:intron 50.0%
ACAGCTTTCAGACCCTGCCA+AGG - chr3.3:90627754-90627773 None:intergenic 55.0%
AGACTGCTAGGCACAGCACT+AGG - chr3.3:90629008-90629027 None:intergenic 55.0%
CTTTCAGACCCTGCCAAGGA+AGG - chr3.3:90627750-90627769 None:intergenic 55.0%
GAAGTTCCTGTGGGCCTTTC+AGG - chr3.3:90629880-90629899 None:intergenic 55.0%
GCACTAGGTACGGCATCTGA+AGG - chr3.3:90628981-90629000 None:intergenic 55.0%
GCCTAGCAGTCTACAACCAG+TGG + chr3.3:90629016-90629035 MS.gene063179:CDS 55.0%
GGCAAAGCCGATGAAGTGGA+CGG - chr3.3:90629829-90629848 None:intergenic 55.0%
TCTAAGCCTGAAAGGCCCAC+AGG + chr3.3:90629871-90629890 MS.gene063179:CDS 55.0%
TTTGACGGCAACGACCTCAG+AGG - chr3.3:90625322-90625341 None:intergenic 55.0%
!! GGATCTTCTGGGACGTAGTC+TGG + chr3.3:90626028-90626047 MS.gene063179:CDS 55.0%
!! TCTTCTGGGACGTAGTCTGG+AGG + chr3.3:90626031-90626050 MS.gene063179:CDS 55.0%
!!! GCTTGCTTGTTTTGGGGTCC+CGG - chr3.3:90626608-90626627 None:intergenic 55.0%
AGTTAGCCCCTCCTCCTGAG+AGG + chr3.3:90627999-90628018 MS.gene063179:intron 60.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 90625135 90629984 90625135 ID=MS.gene063179
chr3.3 mRNA 90625135 90629984 90625135 ID=MS.gene063179.t1;Parent=MS.gene063179
chr3.3 exon 90625135 90625186 90625135 ID=MS.gene063179.t1.exon1;Parent=MS.gene063179.t1
chr3.3 CDS 90625135 90625186 90625135 ID=cds.MS.gene063179.t1;Parent=MS.gene063179.t1
chr3.3 exon 90625304 90625344 90625304 ID=MS.gene063179.t1.exon2;Parent=MS.gene063179.t1
chr3.3 CDS 90625304 90625344 90625304 ID=cds.MS.gene063179.t1;Parent=MS.gene063179.t1
chr3.3 exon 90625803 90625872 90625803 ID=MS.gene063179.t1.exon3;Parent=MS.gene063179.t1
chr3.3 CDS 90625803 90625872 90625803 ID=cds.MS.gene063179.t1;Parent=MS.gene063179.t1
chr3.3 exon 90625970 90626118 90625970 ID=MS.gene063179.t1.exon4;Parent=MS.gene063179.t1
chr3.3 CDS 90625970 90626118 90625970 ID=cds.MS.gene063179.t1;Parent=MS.gene063179.t1
chr3.3 exon 90626353 90626448 90626353 ID=MS.gene063179.t1.exon5;Parent=MS.gene063179.t1
chr3.3 CDS 90626353 90626448 90626353 ID=cds.MS.gene063179.t1;Parent=MS.gene063179.t1
chr3.3 exon 90626570 90626640 90626570 ID=MS.gene063179.t1.exon6;Parent=MS.gene063179.t1
chr3.3 CDS 90626570 90626640 90626570 ID=cds.MS.gene063179.t1;Parent=MS.gene063179.t1
chr3.3 exon 90627413 90627474 90627413 ID=MS.gene063179.t1.exon7;Parent=MS.gene063179.t1
chr3.3 CDS 90627413 90627474 90627413 ID=cds.MS.gene063179.t1;Parent=MS.gene063179.t1
chr3.3 exon 90627556 90627619 90627556 ID=MS.gene063179.t1.exon8;Parent=MS.gene063179.t1
chr3.3 CDS 90627556 90627619 90627556 ID=cds.MS.gene063179.t1;Parent=MS.gene063179.t1
chr3.3 exon 90627747 90627831 90627747 ID=MS.gene063179.t1.exon9;Parent=MS.gene063179.t1
chr3.3 CDS 90627747 90627831 90627747 ID=cds.MS.gene063179.t1;Parent=MS.gene063179.t1
chr3.3 exon 90628084 90628210 90628084 ID=MS.gene063179.t1.exon10;Parent=MS.gene063179.t1
chr3.3 CDS 90628084 90628210 90628084 ID=cds.MS.gene063179.t1;Parent=MS.gene063179.t1
chr3.3 exon 90628753 90628835 90628753 ID=MS.gene063179.t1.exon11;Parent=MS.gene063179.t1
chr3.3 CDS 90628753 90628835 90628753 ID=cds.MS.gene063179.t1;Parent=MS.gene063179.t1
chr3.3 exon 90628978 90629056 90628978 ID=MS.gene063179.t1.exon12;Parent=MS.gene063179.t1
chr3.3 CDS 90628978 90629056 90628978 ID=cds.MS.gene063179.t1;Parent=MS.gene063179.t1
chr3.3 exon 90629486 90629613 90629486 ID=MS.gene063179.t1.exon13;Parent=MS.gene063179.t1
chr3.3 CDS 90629486 90629613 90629486 ID=cds.MS.gene063179.t1;Parent=MS.gene063179.t1
chr3.3 exon 90629811 90629984 90629811 ID=MS.gene063179.t1.exon14;Parent=MS.gene063179.t1
chr3.3 CDS 90629811 90629984 90629811 ID=cds.MS.gene063179.t1;Parent=MS.gene063179.t1
Gene Sequence

>MS.gene063179

ATGGAGTGGGTCGTTGGCGGAAAGTTTAAGATTGGTCGCAAAATCGGAAGCGGTTCATTTGGTGAAATTTATATAGGTAATTTATTATTATTCATTTCTATTTCATTTATTTGTATTGTTCTATTCAACATTCATATGCGGATGCTGATTATCTTGTTGCTTTTTGCAGCCTCTGATATGGACACCTCTGAGGTCGTTGCCGTCAAAATGGTTTGTTTCTTTCTCTTTCATTTCCCATCTCTTTATCATTCATCACGTTAATTTTGCTTAAAGTTTTTTTTATGTATAATTTGTGAATGCTCCGGTAATCTAAGGAATAGATCATTTTATCCTAATGAGATCAACATTTTGTATCGGGTTTGATGGGTTTGGGTAGCTCAACTGATTAGGGTTAAAAGGAGTTTGAGGATCCGAGTTTAAACCCTGATCATCAAGGTAGCTACTAATTATTAAGAAATGAATGAATGTAGCTTGATAACATGGAATTAGGGATGTGTTTTTGGATATGCATAAAGTGAATTAATCACTACAAGTATAAACTTATACTTGCTTGCTAGGTGTAAGCCATGACCTTTATTTTTTACACACTTTCATATTCAATTGCTCAACAACTATTGTGTACAAGGCCTAATGCTGATTCGTACTAGCTACATTTCTTTATTTTGTAGGAGAAGAAGAGAACAAGGCATCCACAACTATTGTATGAGGCCAAATTATACAGTCTTCTCCAAGGAGAAAGTAAGTTATAAAAGAAGCATTTGGGTATATTTGGATCTCATATGGAAAAGGCTATGTTACTTGTTTTTTCTGATTCGTCTTACACTTCGGATTTTAGGTGGTATTCCAACTATGAGATGGTGCGGTACTGATGGAGATCATAATATTCTGGTTATGGATCTTCTGGGACGTAGTCTGGAGGACCTTTTTGTCTTCTGCGGGAGCAAGTTTACTTTAAAAACAGTTTTGATGTTAGCAGACCAGATGGTAACCACTGATTCATATCTGGATTGCTTGCTTTATTTTTCAATTGGCATCATTAGTTCCTTGATGATATTAAATATGGCTTTTGGAAATAACTATCATGTTTGTTGCCTATCAATATAGTAGCAGTTTTATATCGAAAAGTTACCTCTTGTAGGAAATGCTCCTATCCACAGGGACTTTCAATGAAAGCACATTAATGTCAGTTTATTTCTGCTTTATTGTACTTGACCACAGCTTTCGAGAATAGAGTACATGCATTCCAAGGGATTTTTACATAGAGACATCAAACCAGATAACTTCCTAATGGGTATTAGGAGAAAATCAAGTCAGGTAAAATCATCTAAATTCATTATCTTCACTGGCTAATTATGTTGATAATTTTCCCGTCCCATAATTCCTTTTATGTTTCATATGTCTTACATTTTCTTTCTGCAATTTGTTACATTTATAGGTTTATATTATTGATTTCGGACTAGGAAAAAGATACCGGGACCCCAAAACAAGCAAGCATATTCCTTATAGGTATATTTTGTTGTTTAATTTTAATTATATTTCTAATCTTTTATTATGGATCATGTTTTTACATGTTATAAGGTTTTCTTGTGTCCTAAAAATACTTGATTTGTTTACTTTTCTATTTACAAAAGTTCTAGAGGTTTGACCACATGAAACCAGATTGTTTTAATGTCACACATGAAGTAAAAAAAAAAAAAATATATGAGAAGATAAATTGAAAGTTGATATTAATTATTCTTCATTGGATAACAGTTAATAAAGGTATTCAATTAAGTTTTCTATATTTCAAATCTTATAATTACCAAAAACTTCTGTAACTGGTGTGATCATTGCCTATTTTCTTATGGCATCCTTGATGTGTACCAGTACTACTGTGCAGTTATAAGCAAAAAAAATGTCTAAATTTGATGGACTCAAAGTGTCTACTGGTGTGATCATTTAATGTTACTATTACAAAAACACCCTTACGTTAATACTTTAATGTTGTGAGGAGATGACCATAATAAGTTTGGAAGTAGGTATTTTTTGCTTATAATGGAGTTTAGAGGGGGTATTTTGTGAAATGGTCTCTCATTTTTTTTTTTTTTTGTAAATTAAATGTACATTGCTGTTTATCAATAGAGAGTCTTCCAACTTGTAATCTGTGTAATCTCAAATAATTCCTTTTCCGGACTCTTCTGAGTTCTGATTGTTTCATTCTCACTGCTACTTGTGATTTGCTAGTTTAACTAGTCAAGTTAATGGTCCCTAATGTTTTGACCTTGATAAACTTATACAGAGAGAATAAAAGTTTAACAGGGACGGCACGATATGCAAGTTGCAATACTCACTTAGGAATCGGTACGTAGAAATAACTTCTCCTTCTTTACAGCTAAGCTTGTAACCCACAAATTTCATTCTATTTTGGTTTAATTTATTCAGAGCAAAGTCGCCGTGATGATTTGGAGTCTATTGGCTATGTCCTTATGTACTTCTTAAGAGGAAGGTATGTTTCTTCCCATTCATTGTAATTTTCTTACATTTTGAATTTTAAAAAATGGTGCATATGAGTATCAATTGCACATTCTTTTTAGGTAAATTTAGGGCTTGACTATATGGTTTTTGCATTTTAGCCTTCCTTGGCAGGGTCTGAAAGCTGTCACCAAAGAGGAAAAATATGACAAGATTCGTGAGAAGAAGTTATCAACTTCCACTGAGGTATACATTTTCAATTCCATAAAATGATTAACCCCTGACCCTCAATCTAGTTTTTAATTTCCTTTTCTTCTCGCCCTCATACTTTGACCTACATGAATACCTGGAACTATTGACGAAACAATATTAAGAGCTTTTAAGGATTGCTATTACTGGATTTATCAAATTTTAGTTAGCCCCTCCTCCTGAGAGGTTTTATCATTGAAGTGTTTTTGTTACTCAGAAGTTTAATGAACCCATATTCCTTGTTCTCAGAAGCTTTGCGAATCATATCCCGTGGAGTTTGCGTCTTACTTTCATTATTGTCGCTCCTTGACATTTGATCAAGATCCAGATTATGGATTCTTAAAGCGTCTGTTTCGTGAGTTGTTCACTCGTGAAGGTATTGACTGCTTTTTTATCTTATACTTGATTTTAAGTAATTACTGTCAATTGGACATATAGGATATATGACATTGTTTGATGATATGATAATTTGCTTATTAGTTGGTTGTTTTAGCCTGTTGAATGTAGGAGGCATTATAAATGACTTCCACTAAGTATTTAACCTTTCTTCTTTCTCCTTTAGTTATGCAAATTTTGTGCCAGAATATCTCTACTTAAGCACATACTGCATACAGTACATAGGTATACGTTTGAGATGAGACCTACATGTGGTCTTGAGAACAAAGCCAACTATCTAACATTTTATGATTTTATTGTTTTTCATCCATTACTCTATATCCAAAAATTCATGTTTTGGAAATTTTATGAATTAGTTCATTAATTCTTCATTTGTGTTTGCTTGGAAATAAATGATTTAGCTGTATCATGTACTAGTAACCAATCTTAGGGTTTCAGAGTTGTTTCTGGTAGCCTCTTGTGTTGTATTTATCTTCTCCCCCGATGTAATAAGAAGTTTATTTGGCTGAATTTAATGAGCAGGATATGACTATGACAATTTATTCGACTGGACCATCCTAAAATATCAGCAGACGCAACAGACAAGGAGACAAAAGCAATCATCGGTTAGTATTTTATTTTGAACCTTTAAACATTTTTATGGTCTAGCTTGCATTTACTGGAATGCATATGGATTGTCTGATAGCCCGATTATTAAACTTTCCTGATTTTATTCTCTTCCTCACTTGAATCAATGACTATTTGCAGCCTTCAGATGCCGTACCTAGTGCTGTTCCTAGTGCTGTGCCTAGCAGTCTACAACCAGTGGTTGTGGAAAAACATACAGGTAACTTCAGTCTTCTTATGTTCATACAATGAGGTTAAAACTTGAACGAATTCTGTTCAATTGTGGGAGATTTTTCCTAGATAATGTATATTGAAGTGATTTGCTAGATGAGATTTTTATTTTCCAGTAGAATGAGTTAGAATTTAAAGTTACATTTTAATGCTCATTGCAAAACGGAAAAAAGGCAATAGTTTCTATCTTAATATAAGCTTCTGATGTACAAAGAATTAAGATAGTTGCCAAGATTGACAGATATTTACCAACAAATTCCTTGTTATTATTATTATTTTTCACTTGGAAGTTGGAACTTGGAAGTTTTGCTTTGCTGTACCGCTGTTCAACTAAGAAAGACTAAGTTTGCAGTATAGTTGATTAATGCTGTCTACAGATTACATCCTGATGATGTACATGTCTTAATTTCCTTTTCAGGAATCAATAATTCACCTCAAGTTACTGTAACAAAACTGCTAACCAATCTTGATCGTCCAAATGTGCGTGTGCAGCCTAAGCCATCCAATCTAAAGAATCTAAATGCTAAGAATCATACGGGAAAACATGTAAGTCACAGTAATTTCTTCCGACTGCCATTGGATTTCTTCTTAATTTTACCTCTATATCCTCTATTAATTGCTAAGACATGGTGGCGTCACTTCTGTCGTCATGTTTGTGCTGTTAGTTCAATCACAAAGATATTTTGTTTTGATTTTTTTTACTTGGCTGAAGAAATTCAACTGATTGAGATAAATTTGTGCAGAATGTGAACAATGATCCGTCCACTTCATCGGCTTTGCCCAAATCAACTGCAGAAAATGTCTCTAAGCCTGAAAGGCCCACAGGAACTTCAAACCTAGGTCGTGTATTTGGGAATAACTCCCATATTTCAAGCAGCTGGATTCCTTCTTTACGGCGAATTTCTTCTACCAAATAG

Protein sequence

>MS.gene063179.t1

MEWVVGGKFKIGRKIGSASDMDTSEVVAVKMEKKRTRHPQLLYEAKLYSLLQGESGIPTMRWCGTDGDHNILVMDLLGRSLEDLFVFCGSKFTLKTVLMLADQMLSRIEYMHSKGFLHRDIKPDNFLMGIRRKSSQVYIIDFGLGKRYRDPKTSKHIPYRENKSLTGTARYASCNTHLGIEQSRRDDLESIGYVLMYFLRGSLPWQGLKAVTKEEKYDKIREKKLSTSTEKLCESYPVEFASYFHYCRSLTFDQDPDYGFLKRLFRELFTREGYDYDNLFDWTILKYQQTQQTRRQKQSSPSDAVPSAVPSAVPSSLQPVVVEKHTGINNSPQVTVTKLLTNLDRPNVRVQPKPSNLKNLNAKNHTGKHNVNNDPSTSSALPKSTAENVSKPERPTGTSNLGRVFGNNSHISSSWIPSLRRISSTK