Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053625.t1 | XP_003608341.1 | 96.2 | 524 | 20 | 0 | 7 | 530 | 6 | 529 | 3.20E-275 | 957.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053625.t1 | P49295 | 72.6 | 468 | 127 | 1 | 63 | 530 | 76 | 542 | 7.0e-191 | 668.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053625.t1 | G7JU04 | 96.2 | 524 | 20 | 0 | 7 | 530 | 6 | 529 | 2.3e-275 | 957.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053625 | MS.gene063179 | 0.801716 | 7.90E-49 | -1.69E-46 |
| MS.gene053625 | MS.gene40099 | 0.81418 | 1.76E-51 | -1.69E-46 |
| MS.gene053625 | MS.gene64394 | 0.849506 | 3.10E-60 | -1.69E-46 |
| MS.gene053625 | MS.gene66921 | 0.835726 | 1.42E-56 | -1.69E-46 |
| MS.gene053625 | MS.gene72120 | 0.806063 | 9.87E-50 | -1.69E-46 |
| MS.gene053625 | MS.gene72122 | 0.800442 | 1.44E-48 | -1.69E-46 |
| MS.gene053625 | MS.gene88662 | 0.807024 | 6.19E-50 | -1.69E-46 |
| MS.gene053625 | MS.gene90267 | 0.895779 | 6.93E-76 | -1.69E-46 |
| MS.gene053625 | MS.gene93205 | 0.806127 | 9.57E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053625.t1 | MTR_4g092820 | 95.817 | 526 | 22 | 0 | 5 | 530 | 4 | 529 | 0.0 | 1032 |
| MS.gene053625.t1 | MTR_3g111190 | 65.896 | 519 | 171 | 4 | 14 | 530 | 17 | 531 | 0.0 | 692 |
| MS.gene053625.t1 | MTR_5g067410 | 69.892 | 465 | 138 | 2 | 63 | 525 | 73 | 537 | 0.0 | 666 |
| MS.gene053625.t1 | MTR_3g111190 | 69.425 | 435 | 132 | 1 | 97 | 530 | 1 | 435 | 0.0 | 627 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053625.t1 | AT1G58290 | 70.933 | 461 | 127 | 3 | 65 | 522 | 79 | 535 | 0.0 | 660 |
| MS.gene053625.t1 | AT1G09940 | 70.021 | 467 | 133 | 4 | 63 | 527 | 68 | 529 | 0.0 | 654 |
| MS.gene053625.t1 | AT2G31250 | 61.505 | 465 | 166 | 7 | 68 | 527 | 67 | 523 | 0.0 | 541 |
Find 128 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGGTGCATTTGGGAATTT+TGG | 0.112763 | 4.4:+21672153 | None:intergenic |
| GATGCTAGGGTGTTGGTAAT+TGG | 0.178842 | 4.4:-21671087 | MS.gene053625:CDS |
| GGTCTTGACTCCCTTGTTCT+TGG | 0.227585 | 4.4:-21671321 | MS.gene053625:CDS |
| TCAGATCTTGTTGTATAATA+AGG | 0.278776 | 4.4:-21671376 | MS.gene053625:CDS |
| TGGGGAGGGAATGTGGATTT+AGG | 0.284186 | 4.4:+21672196 | None:intergenic |
| AGCAATGTATGCCCTTAGTA+TGG | 0.288199 | 4.4:-21670488 | MS.gene053625:CDS |
| AAATTGAGCAGGGGAGAATT+TGG | 0.291856 | 4.4:+21672219 | None:intergenic |
| ACTTGAGGCCACTGTGCTTC+TGG | 0.294125 | 4.4:+21671856 | None:intergenic |
| GTTAAACAAGTTGTTAAATC+TGG | 0.297055 | 4.4:-21671276 | MS.gene053625:CDS |
| ATGCTAGGGTGTTGGTAATT+GGG | 0.306611 | 4.4:-21671086 | MS.gene053625:CDS |
| GAAGCTAGTGATTAAACATT+TGG | 0.322618 | 4.4:-21671049 | MS.gene053625:CDS |
| ATCAGAACGAAGGGTGCATT+TGG | 0.332400 | 4.4:+21672144 | None:intergenic |
| AAGCGTTCAGAGTCTTCTTT+TGG | 0.341676 | 4.4:-21671111 | MS.gene053625:CDS |
| GGTAATTGGGGCGGGGAAGA+TGG | 0.348702 | 4.4:-21671073 | MS.gene053625:CDS |
| GGAAGCACGGGGAATTATTC+AGG | 0.359513 | 4.4:-21670662 | MS.gene053625:CDS |
| GCTCTAAATTTCTTAATAGT+AGG | 0.365495 | 4.4:+21670592 | None:intergenic |
| GGCTATCTCTGTTGGAAAAC+GGG | 0.366509 | 4.4:-21671205 | MS.gene053625:CDS |
| GTAATTGGGGCGGGGAAGAT+GGG | 0.376026 | 4.4:-21671072 | MS.gene053625:CDS |
| GGAGCGAAGAGTGGCGGTGG+AGG | 0.392096 | 4.4:+21672246 | None:intergenic |
| ATTAAACATTTGGTTGCTAA+AGG | 0.398912 | 4.4:-21671039 | MS.gene053625:CDS |
| AGTTTCTCGCGCATCTCAAC+AGG | 0.404341 | 4.4:+21671886 | None:intergenic |
| AAGAGCAGCATAATTGTGAT+TGG | 0.413113 | 4.4:-21671928 | MS.gene053625:CDS |
| AAGAGAAAGTCAATGCCATT+AGG | 0.420004 | 4.4:-21670984 | MS.gene053625:CDS |
| CTTCTCACACCTTGGCCAAC+CGG | 0.420234 | 4.4:+21670823 | None:intergenic |
| TTCAAGCAGGCTATCTCTGT+TGG | 0.424603 | 4.4:-21671213 | MS.gene053625:CDS |
| GCGAAGAGTGGCGGTGGAGG+AGG | 0.425211 | 4.4:+21672249 | None:intergenic |
| ACGCCTGGATCCACGTTCCT+TGG | 0.425824 | 4.4:+21670775 | None:intergenic |
| GACTCCCTTGTTCTTGGAGA+AGG | 0.433930 | 4.4:-21671315 | MS.gene053625:CDS |
| ACAGAGACTAACATTTCGTC+TGG | 0.438749 | 4.4:-21671177 | MS.gene053625:CDS |
| GATCTCGAGAGGAGAAGGTT+TGG | 0.440833 | 4.4:+21672093 | None:intergenic |
| GCAATCTCAATGGCGGCTGC+AGG | 0.442620 | 4.4:-21672280 | None:intergenic |
| ACAGTGGCCTCAAGTTATTC+AGG | 0.443760 | 4.4:-21671848 | MS.gene053625:CDS |
| ATCTCAATGGCGGCTGCAGG+TGG | 0.446675 | 4.4:-21672277 | None:intergenic |
| TGAGACGGAAATATCATTGA+TGG | 0.449585 | 4.4:-21670347 | MS.gene053625:CDS |
| ATTGTGAATAAGCTACTTCA+TGG | 0.456488 | 4.4:-21670463 | MS.gene053625:CDS |
| AGGCTATCTCTGTTGGAAAA+CGG | 0.456584 | 4.4:-21671206 | MS.gene053625:CDS |
| TAATTGGGGCGGGGAAGATG+GGG | 0.457063 | 4.4:-21671071 | MS.gene053625:CDS |
| TTAAACATTTGGTTGCTAAA+GGG | 0.458547 | 4.4:-21671038 | MS.gene053625:CDS |
| ATCCTTCAACTCCTTCCTAA+TGG | 0.459263 | 4.4:+21670969 | None:intergenic |
| TCAGAACGAAGGGTGCATTT+GGG | 0.463289 | 4.4:+21672145 | None:intergenic |
| AAATCTGGACAAGGGGTGCC+AGG | 0.464157 | 4.4:-21671261 | MS.gene053625:CDS |
| GAGTCGATGGGGAGGGAATG+TGG | 0.465485 | 4.4:+21672189 | None:intergenic |
| TGCCATTAGGAAGGAGTTGA+AGG | 0.465860 | 4.4:-21670971 | MS.gene053625:CDS |
| TTCTCAAGTTCCGACACGCC+TGG | 0.475568 | 4.4:+21670760 | None:intergenic |
| GGAGGAATTGAATACATTTG+AGG | 0.476494 | 4.4:-21670641 | MS.gene053625:CDS |
| TATTCACAATACCCATACTA+AGG | 0.478653 | 4.4:+21670476 | None:intergenic |
| GTGGATTTAGGAAATTGAGC+AGG | 0.482754 | 4.4:+21672208 | None:intergenic |
| AGAAAAGATCAGAGTCAAGA+TGG | 0.484888 | 4.4:-21670323 | MS.gene053625:CDS |
| AATTTAGAGCTTATGTTGAA+AGG | 0.485422 | 4.4:-21670579 | MS.gene053625:CDS |
| TAGGGTGTTGGTAATTGGGG+CGG | 0.485807 | 4.4:-21671082 | MS.gene053625:CDS |
| TTTCTTACTGTCAGCTGAAG+AGG | 0.489860 | 4.4:+21672063 | None:intergenic |
| TTCTGTTAGTTCAGCTGCTG+TGG | 0.490414 | 4.4:-21671148 | MS.gene053625:CDS |
| GAACGTGGAGATTCTTCCTC+CGG | 0.497442 | 4.4:-21670842 | MS.gene053625:CDS |
| TAGACGTCTTTCTGATATGA+TGG | 0.497908 | 4.4:-21670932 | MS.gene053625:CDS |
| ATTCCAAGGAACGTGGATCC+AGG | 0.507096 | 4.4:-21670778 | MS.gene053625:CDS |
| AATAAGTGGTTTGTTCAAGC+AGG | 0.508112 | 4.4:-21671226 | MS.gene053625:CDS |
| AGGGTGTTGGTAATTGGGGC+GGG | 0.514106 | 4.4:-21671081 | MS.gene053625:CDS |
| GAGGCTGATGTGATCTTCAC+TGG | 0.518849 | 4.4:-21670898 | MS.gene053625:CDS |
| TAGTTCAGCTGCTGTGGAGT+TGG | 0.523446 | 4.4:-21671142 | MS.gene053625:CDS |
| AAGGATTAGAGCTTCTGAGC+TGG | 0.524082 | 4.4:-21670560 | MS.gene053625:CDS |
| ACAGAAAGCTATGGAAGCAC+GGG | 0.524843 | 4.4:-21670674 | MS.gene053625:CDS |
| GACTAACATTTCGTCTGGGT+CGG | 0.525209 | 4.4:-21671172 | MS.gene053625:CDS |
| ATCTGATGTTTAGAAATCTC+AGG | 0.527073 | 4.4:+21671393 | None:intergenic |
| TTGGCCAAGGTGTGAGAAGA+CGG | 0.528492 | 4.4:-21670819 | MS.gene053625:CDS |
| TTAAGGATCTCGAGAGGAGA+AGG | 0.534319 | 4.4:+21672088 | None:intergenic |
| ATGGTCCCATGCAGCATCTG+AGG | 0.538196 | 4.4:-21670444 | MS.gene053625:CDS |
| GGAGGAGCGAAGAGTGGCGG+TGG | 0.538915 | 4.4:+21672243 | None:intergenic |
| GTGTTAGAGAAGTCACTGAT+TGG | 0.544478 | 4.4:-21671732 | MS.gene053625:CDS |
| TGGATTTAGGAAATTGAGCA+GGG | 0.546840 | 4.4:+21672209 | None:intergenic |
| GGATAGACAACAGAAAGCTA+TGG | 0.551254 | 4.4:-21670683 | MS.gene053625:CDS |
| TCACACCTCAGATGCTGCAT+GGG | 0.553415 | 4.4:+21670439 | None:intergenic |
| TGCTAGGGTGTTGGTAATTG+GGG | 0.554231 | 4.4:-21671085 | MS.gene053625:CDS |
| ATCACACCTCAGATGCTGCA+TGG | 0.554607 | 4.4:+21670438 | None:intergenic |
| ATTCTTCCTCCGGTTGGCCA+AGG | 0.557516 | 4.4:-21670832 | MS.gene053625:CDS |
| GTGGAGATTCTTCCTCCGGT+TGG | 0.559100 | 4.4:-21670838 | MS.gene053625:CDS |
| AACAGAAAGCTATGGAAGCA+CGG | 0.561734 | 4.4:-21670675 | MS.gene053625:CDS |
| TTGAGCAGGGGAGAATTTGG+CGG | 0.562147 | 4.4:+21672222 | None:intergenic |
| GAAAAGATCAGAGTCAAGAT+GGG | 0.562597 | 4.4:-21670322 | MS.gene053625:CDS |
| AGCAGGGGAGAATTTGGCGG+AGG | 0.563329 | 4.4:+21672225 | None:intergenic |
| CAAGTTGTTAAATCTGGACA+AGG | 0.563618 | 4.4:-21671270 | MS.gene053625:CDS |
| GGGTGTTAAAAGAGAGTCGA+TGG | 0.563812 | 4.4:+21672176 | None:intergenic |
| GAAAGTCAATGCCATTAGGA+AGG | 0.565681 | 4.4:-21670980 | MS.gene053625:CDS |
| TAAAAGAGAGTCGATGGGGA+GGG | 0.571739 | 4.4:+21672182 | None:intergenic |
| GGGTGTTGGTAATTGGGGCG+GGG | 0.573785 | 4.4:-21671080 | MS.gene053625:CDS |
| ATGCAGCATCTGAGGTGTGA+TGG | 0.574996 | 4.4:-21670436 | MS.gene053625:CDS |
| TCGTTGATATATCTATTCCA+AGG | 0.575192 | 4.4:-21670792 | MS.gene053625:CDS |
| GCAATGTATGCCCTTAGTAT+GGG | 0.576353 | 4.4:-21670487 | MS.gene053625:CDS |
| CATCTGTTTGAAGTAGCTGC+TGG | 0.577887 | 4.4:-21671342 | MS.gene053625:CDS |
| AGAAGTTGTTGATGCTAACA+AGG | 0.578083 | 4.4:-21670707 | MS.gene053625:CDS |
| ATGTTTAGAAATCTCAGGTA+CGG | 0.580762 | 4.4:+21671398 | None:intergenic |
| TGCAGCATCTGAGGTGTGAT+GGG | 0.582531 | 4.4:-21670435 | MS.gene053625:CDS |
| TTAAAAGAGAGTCGATGGGG+AGG | 0.584069 | 4.4:+21672181 | None:intergenic |
| TTTGACCTTCTCCAAGAACA+AGG | 0.584511 | 4.4:+21671310 | None:intergenic |
| GATGCGTGGTGACGTCTCGA+AGG | 0.587941 | 4.4:-21670521 | MS.gene053625:CDS |
| AATTGAATACATTTGAGGCG+TGG | 0.589108 | 4.4:-21670636 | MS.gene053625:CDS |
| AAGGAGATTATCAGAACGAA+GGG | 0.598177 | 4.4:+21672135 | None:intergenic |
| GGCGGAGGAGCGAAGAGTGG+CGG | 0.605304 | 4.4:+21672240 | None:intergenic |
| TAACACCGCGGTGTTGAGAG+AGG | 0.614922 | 4.4:+21671749 | None:intergenic |
| AACACCGCGGTGTTGAGAGA+GGG | 0.615162 | 4.4:+21671750 | None:intergenic |
| AGAGCCGTCTTCTCACACCT+TGG | 0.615615 | 4.4:+21670815 | None:intergenic |
| GATCAGAGTCAAGATGGGAA+AGG | 0.621872 | 4.4:-21670317 | MS.gene053625:CDS |
| TTTGGCGGAGGAGCGAAGAG+TGG | 0.622667 | 4.4:+21672237 | None:intergenic |
| ATTCACAATACCCATACTAA+GGG | 0.623282 | 4.4:+21670477 | None:intergenic |
| GGTGTTAAAAGAGAGTCGAT+GGG | 0.629384 | 4.4:+21672177 | None:intergenic |
| TATGATGGAATGTGCTGCTG+AGG | 0.629809 | 4.4:-21670917 | MS.gene053625:CDS |
| GAAGGAGATTATCAGAACGA+AGG | 0.635603 | 4.4:+21672134 | None:intergenic |
| CAGAGACTAACATTTCGTCT+GGG | 0.635999 | 4.4:-21671176 | MS.gene053625:CDS |
| AGTTGTTAAATCTGGACAAG+GGG | 0.636682 | 4.4:-21671268 | MS.gene053625:CDS |
| GAACGTGGATCCAGGCGTGT+CGG | 0.638878 | 4.4:-21670770 | MS.gene053625:CDS |
| AGTCACTGATTGGATCTCCA+AGG | 0.639826 | 4.4:-21671722 | MS.gene053625:intron |
| TACTTCAAACAGATGTTGTG+TGG | 0.642747 | 4.4:+21671350 | None:intergenic |
| TATATCTATTCCAAGGAACG+TGG | 0.651140 | 4.4:-21670785 | MS.gene053625:CDS |
| AAGTTGTTAAATCTGGACAA+GGG | 0.651987 | 4.4:-21671269 | MS.gene053625:CDS |
| CTCACACCTTGGCCAACCGG+AGG | 0.652057 | 4.4:+21670826 | None:intergenic |
| CAGAATGTATGATCTTGAGA+CGG | 0.654392 | 4.4:-21670362 | MS.gene053625:CDS |
| CATAACTCCTGAATAACTTG+AGG | 0.655387 | 4.4:+21671841 | None:intergenic |
| TTGACCTTCTCCAAGAACAA+GGG | 0.668022 | 4.4:+21671311 | None:intergenic |
| GTGTTAAAAGAGAGTCGATG+GGG | 0.677380 | 4.4:+21672178 | None:intergenic |
| AGCACGGGGAATTATTCAGG+AGG | 0.690702 | 4.4:-21670659 | MS.gene053625:CDS |
| GGTGTTGAGAGAGGGCAACA+AGG | 0.693165 | 4.4:+21671758 | None:intergenic |
| GGATTTAGGAAATTGAGCAG+GGG | 0.695899 | 4.4:+21672210 | None:intergenic |
| CAGAAAGCTATGGAAGCACG+GGG | 0.698718 | 4.4:-21670673 | MS.gene053625:CDS |
| AAATGTTTGTCAAAGATGCG+TGG | 0.708070 | 4.4:-21670535 | MS.gene053625:CDS |
| AGTTGTTGATGCTAACAAGG+AGG | 0.725440 | 4.4:-21670704 | MS.gene053625:CDS |
| GTTGCCCTCTCTCAACACCG+CGG | 0.747760 | 4.4:-21671754 | MS.gene053625:CDS |
| TTGCAATTCCAGAAGCACAG+TGG | 0.751553 | 4.4:-21671864 | MS.gene053625:CDS |
| CAGTGACTTCTCTAACACCG+CGG | 0.783803 | 4.4:+21671737 | None:intergenic |
| GAATGCACTAGTGTACAATG+TGG | 0.788796 | 4.4:-21670740 | MS.gene053625:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATATAATAAGTACGT+AGG | + | chr4.4:21671016-21671035 | None:intergenic | 15.0% |
| !! | TAAATTGAATTGAATTGAAT+TGG | + | chr4.4:21670559-21670578 | None:intergenic | 15.0% |
| !! | TAAATTTGATGTATTCTATA+TGG | - | chr4.4:21670983-21671002 | MS.gene053625:CDS | 15.0% |
| !!! | TATTATATTTTTACAGCTTA+GGG | - | chr4.4:21671023-21671042 | MS.gene053625:CDS | 15.0% |
| !!! | TTATTATATTTTTACAGCTT+AGG | - | chr4.4:21671022-21671041 | MS.gene053625:CDS | 15.0% |
| !! | AGATATATGAATAAATACCT+TGG | + | chr4.4:21670875-21670894 | None:intergenic | 20.0% |
| !!! | TTTCTGTTTTTGTTTGTTTT+AGG | - | chr4.4:21670613-21670632 | MS.gene053625:CDS | 20.0% |
| ! | AATACATCAAATTTAGTCTC+TGG | + | chr4.4:21670978-21670997 | None:intergenic | 25.0% |
| ! | ATTAAACATTTGGTTGCTAA+AGG | - | chr4.4:21671538-21671557 | MS.gene053625:intron | 25.0% |
| ! | GATGTATTCTATATGGTTTA+TGG | - | chr4.4:21670990-21671009 | MS.gene053625:CDS | 25.0% |
| ! | GTTAAACAAGTTGTTAAATC+TGG | - | chr4.4:21671301-21671320 | MS.gene053625:CDS | 25.0% |
| ! | TTAAACATTTGGTTGCTAAA+GGG | - | chr4.4:21671539-21671558 | MS.gene053625:intron | 25.0% |
| !! | AATTTAGAGCTTATGTTGAA+AGG | - | chr4.4:21671998-21672017 | MS.gene053625:intron | 25.0% |
| !! | GCTCTAAATTTCTTAATAGT+AGG | + | chr4.4:21671988-21672007 | None:intergenic | 25.0% |
| !! | TCAGATCTTGTTGTATAATA+AGG | - | chr4.4:21671201-21671220 | MS.gene053625:CDS | 25.0% |
| !!! | GTTCTCTTTTGAAAACAAAA+GGG | + | chr4.4:21671719-21671738 | None:intergenic | 25.0% |
| !!! | GTTTGTTTTAGGATATACAA+AGG | - | chr4.4:21670624-21670643 | MS.gene053625:CDS | 25.0% |
| AAGTTGTTAAATCTGGACAA+GGG | - | chr4.4:21671308-21671327 | MS.gene053625:CDS | 30.0% | |
| AATTGCAGGGATTAAATTGA+TGG | - | chr4.4:21671050-21671069 | MS.gene053625:CDS | 30.0% | |
| ATCTGATGTTTAGAAATCTC+AGG | + | chr4.4:21671187-21671206 | None:intergenic | 30.0% | |
| ATGTTTAGAAATCTCAGGTA+CGG | + | chr4.4:21671182-21671201 | None:intergenic | 30.0% | |
| ATTCACAATACCCATACTAA+GGG | + | chr4.4:21672103-21672122 | None:intergenic | 30.0% | |
| ATTGTGAATAAGCTACTTCA+TGG | - | chr4.4:21672114-21672133 | MS.gene053625:CDS | 30.0% | |
| GAAGCTAGTGATTAAACATT+TGG | - | chr4.4:21671528-21671547 | MS.gene053625:intron | 30.0% | |
| TATTCACAATACCCATACTA+AGG | + | chr4.4:21672104-21672123 | None:intergenic | 30.0% | |
| TCGTTGATATATCTATTCCA+AGG | - | chr4.4:21671785-21671804 | MS.gene053625:CDS | 30.0% | |
| TCTCTGGTATTAAGATCTTA+GGG | + | chr4.4:21670962-21670981 | None:intergenic | 30.0% | |
| ! | TGATGATTTTGCAGAAAAGT+GGG | - | chr4.4:21671152-21671171 | MS.gene053625:CDS | 30.0% |
| !! | CGTTCTCTTTTGAAAACAAA+AGG | + | chr4.4:21671720-21671739 | None:intergenic | 30.0% |
| !! | CTTATTTTCCTATCAAAACC+TGG | + | chr4.4:21671337-21671356 | None:intergenic | 30.0% |
| !! | GGTTTTGATAGGAAAATAAG+TGG | - | chr4.4:21671337-21671356 | MS.gene053625:CDS | 30.0% |
| !! | TTGATGATTTTGCAGAAAAG+TGG | - | chr4.4:21671151-21671170 | MS.gene053625:CDS | 30.0% |
| !! | TTTGTTTTCAAAAGAGAACG+TGG | - | chr4.4:21671720-21671739 | MS.gene053625:intron | 30.0% |
| AAATGTTTGTCAAAGATGCG+TGG | - | chr4.4:21672042-21672061 | MS.gene053625:intron | 35.0% | |
| AAGAGAAAGTCAATGCCATT+AGG | - | chr4.4:21671593-21671612 | MS.gene053625:intron | 35.0% | |
| AAGAGCAGCATAATTGTGAT+TGG | - | chr4.4:21670649-21670668 | MS.gene053625:CDS | 35.0% | |
| AAGGAGATTATCAGAACGAA+GGG | + | chr4.4:21670445-21670464 | None:intergenic | 35.0% | |
| AGAAAAGATCAGAGTCAAGA+TGG | - | chr4.4:21672254-21672273 | MS.gene053625:CDS | 35.0% | |
| AGAAGTTGTTGATGCTAACA+AGG | - | chr4.4:21671870-21671889 | MS.gene053625:CDS | 35.0% | |
| AGTTGTTAAATCTGGACAAG+GGG | - | chr4.4:21671309-21671328 | MS.gene053625:CDS | 35.0% | |
| ATACAGAGCAGAATGAAGAA+GGG | + | chr4.4:21670901-21670920 | None:intergenic | 35.0% | |
| CAAGTTGTTAAATCTGGACA+AGG | - | chr4.4:21671307-21671326 | MS.gene053625:CDS | 35.0% | |
| CAGAATGTATGATCTTGAGA+CGG | - | chr4.4:21672215-21672234 | MS.gene053625:CDS | 35.0% | |
| CATAACTCCTGAATAACTTG+AGG | + | chr4.4:21670739-21670758 | None:intergenic | 35.0% | |
| GAAAAGATCAGAGTCAAGAT+GGG | - | chr4.4:21672255-21672274 | MS.gene053625:CDS | 35.0% | |
| GATCTTAGGGACTAAATTGA+CGG | + | chr4.4:21670949-21670968 | None:intergenic | 35.0% | |
| GGAGGAATTGAATACATTTG+AGG | - | chr4.4:21671936-21671955 | MS.gene053625:CDS | 35.0% | |
| GTCTCTGGTATTAAGATCTT+AGG | + | chr4.4:21670963-21670982 | None:intergenic | 35.0% | |
| TACTTCAAACAGATGTTGTG+TGG | + | chr4.4:21671230-21671249 | None:intergenic | 35.0% | |
| TAGACGTCTTTCTGATATGA+TGG | - | chr4.4:21671645-21671664 | MS.gene053625:intron | 35.0% | |
| TATATCTATTCCAAGGAACG+TGG | - | chr4.4:21671792-21671811 | MS.gene053625:CDS | 35.0% | |
| TGAGACGGAAATATCATTGA+TGG | - | chr4.4:21672230-21672249 | MS.gene053625:CDS | 35.0% | |
| TGGATTTAGGAAATTGAGCA+GGG | + | chr4.4:21670371-21670390 | None:intergenic | 35.0% | |
| ! | AATTGAATACATTTGAGGCG+TGG | - | chr4.4:21671941-21671960 | MS.gene053625:CDS | 35.0% |
| ! | GATGATTTTGCAGAAAAGTG+GGG | - | chr4.4:21671153-21671172 | MS.gene053625:CDS | 35.0% |
| !! | AATAAGTGGTTTGTTCAAGC+AGG | - | chr4.4:21671351-21671370 | MS.gene053625:CDS | 35.0% |
| AAATTGAGCAGGGGAGAATT+TGG | + | chr4.4:21670361-21670380 | None:intergenic | 40.0% | |
| AACAGAAAGCTATGGAAGCA+CGG | - | chr4.4:21671902-21671921 | MS.gene053625:CDS | 40.0% | |
| ACAGAGACTAACATTTCGTC+TGG | - | chr4.4:21671400-21671419 | MS.gene053625:CDS | 40.0% | |
| AGCAATGTATGCCCTTAGTA+TGG | - | chr4.4:21672089-21672108 | MS.gene053625:CDS | 40.0% | |
| AGCTTAGGGACTAAATTGCA+GGG | - | chr4.4:21671037-21671056 | MS.gene053625:CDS | 40.0% | |
| AGGCTATCTCTGTTGGAAAA+CGG | - | chr4.4:21671371-21671390 | MS.gene053625:CDS | 40.0% | |
| AGTTGTTGATGCTAACAAGG+AGG | - | chr4.4:21671873-21671892 | MS.gene053625:CDS | 40.0% | |
| ATCCTTCAACTCCTTCCTAA+TGG | + | chr4.4:21671611-21671630 | None:intergenic | 40.0% | |
| CAGAGACTAACATTTCGTCT+GGG | - | chr4.4:21671401-21671420 | MS.gene053625:CDS | 40.0% | |
| CATACAGAGCAGAATGAAGA+AGG | + | chr4.4:21670902-21670921 | None:intergenic | 40.0% | |
| GAAAGTCAATGCCATTAGGA+AGG | - | chr4.4:21671597-21671616 | MS.gene053625:intron | 40.0% | |
| GAAGGAGATTATCAGAACGA+AGG | + | chr4.4:21670446-21670465 | None:intergenic | 40.0% | |
| GAATGCACTAGTGTACAATG+TGG | - | chr4.4:21671837-21671856 | MS.gene053625:CDS | 40.0% | |
| GCAATGTATGCCCTTAGTAT+GGG | - | chr4.4:21672090-21672109 | MS.gene053625:CDS | 40.0% | |
| GGATAGACAACAGAAAGCTA+TGG | - | chr4.4:21671894-21671913 | MS.gene053625:CDS | 40.0% | |
| GGATTTAGGAAATTGAGCAG+GGG | + | chr4.4:21670370-21670389 | None:intergenic | 40.0% | |
| GGTGTTAAAAGAGAGTCGAT+GGG | + | chr4.4:21670403-21670422 | None:intergenic | 40.0% | |
| GTGGATTTAGGAAATTGAGC+AGG | + | chr4.4:21670372-21670391 | None:intergenic | 40.0% | |
| GTGTTAAAAGAGAGTCGATG+GGG | + | chr4.4:21670402-21670421 | None:intergenic | 40.0% | |
| GTGTTAGAGAAGTCACTGAT+TGG | - | chr4.4:21670845-21670864 | MS.gene053625:CDS | 40.0% | |
| TTGACCTTCTCCAAGAACAA+GGG | + | chr4.4:21671269-21671288 | None:intergenic | 40.0% | |
| TTTCTTACTGTCAGCTGAAG+AGG | + | chr4.4:21670517-21670536 | None:intergenic | 40.0% | |
| TTTGACCTTCTCCAAGAACA+AGG | + | chr4.4:21671270-21671289 | None:intergenic | 40.0% | |
| ! | AAGCGTTCAGAGTCTTCTTT+TGG | - | chr4.4:21671466-21671485 | MS.gene053625:intron | 40.0% |
| ! | AGGGTGCATTTGGGAATTTT+GGG | + | chr4.4:21670426-21670445 | None:intergenic | 40.0% |
| ! | TGTCAGCTGAAGAGGTTTTA+AGG | + | chr4.4:21670509-21670528 | None:intergenic | 40.0% |
| ! | TTGGAAACGATGACGTTTTG+AGG | + | chr4.4:21670468-21670487 | None:intergenic | 40.0% |
| !! | AAGGGTGCATTTGGGAATTT+TGG | + | chr4.4:21670427-21670446 | None:intergenic | 40.0% |
| !! | ATGCTAGGGTGTTGGTAATT+GGG | - | chr4.4:21671491-21671510 | MS.gene053625:intron | 40.0% |
| !! | TGCTAAAGGGTGTCGAAAAA+TGG | - | chr4.4:21671552-21671571 | MS.gene053625:intron | 40.0% |
| !!! | AAACGATGACGTTTTGAGGA+AGG | + | chr4.4:21670464-21670483 | None:intergenic | 40.0% |
| !!! | AGTCTTCTTTTGGTGATGCT+AGG | - | chr4.4:21671476-21671495 | MS.gene053625:intron | 40.0% |
| !!! | GTCTTCTTTTGGTGATGCTA+GGG | - | chr4.4:21671477-21671496 | MS.gene053625:intron | 40.0% |
| AAGGATTAGAGCTTCTGAGC+TGG | - | chr4.4:21672017-21672036 | MS.gene053625:intron | 45.0% | |
| ACAGTGGCCTCAAGTTATTC+AGG | - | chr4.4:21670729-21670748 | MS.gene053625:CDS | 45.0% | |
| CAGCTTAGGGACTAAATTGC+AGG | - | chr4.4:21671036-21671055 | MS.gene053625:CDS | 45.0% | |
| GACTAACATTTCGTCTGGGT+CGG | - | chr4.4:21671405-21671424 | MS.gene053625:CDS | 45.0% | |
| GATCAGAGTCAAGATGGGAA+AGG | - | chr4.4:21672260-21672279 | MS.gene053625:CDS | 45.0% | |
| GGCTATCTCTGTTGGAAAAC+GGG | - | chr4.4:21671372-21671391 | MS.gene053625:CDS | 45.0% | |
| GGGTGTTAAAAGAGAGTCGA+TGG | + | chr4.4:21670404-21670423 | None:intergenic | 45.0% | |
| TAAAAGAGAGTCGATGGGGA+GGG | + | chr4.4:21670398-21670417 | None:intergenic | 45.0% | |
| TGCCATTAGGAAGGAGTTGA+AGG | - | chr4.4:21671606-21671625 | MS.gene053625:intron | 45.0% | |
| TTAAAAGAGAGTCGATGGGG+AGG | + | chr4.4:21670399-21670418 | None:intergenic | 45.0% | |
| TTAAGGATCTCGAGAGGAGA+AGG | + | chr4.4:21670492-21670511 | None:intergenic | 45.0% | |
| TTCAAGCAGGCTATCTCTGT+TGG | - | chr4.4:21671364-21671383 | MS.gene053625:CDS | 45.0% | |
| TTCTGTTAGTTCAGCTGCTG+TGG | - | chr4.4:21671429-21671448 | MS.gene053625:intron | 45.0% | |
| ! | ACAGAAAGCTATGGAAGCAC+GGG | - | chr4.4:21671903-21671922 | MS.gene053625:CDS | 45.0% |
| ! | AGTCACTGATTGGATCTCCA+AGG | - | chr4.4:21670855-21670874 | MS.gene053625:CDS | 45.0% |
| ! | ATCAGAACGAAGGGTGCATT+TGG | + | chr4.4:21670436-21670455 | None:intergenic | 45.0% |
| ! | CATCTGTTTGAAGTAGCTGC+TGG | - | chr4.4:21671235-21671254 | MS.gene053625:CDS | 45.0% |
| ! | GGGTGCATTTGGGAATTTTG+GGG | + | chr4.4:21670425-21670444 | None:intergenic | 45.0% |
| ! | GGTGCATTTGGGAATTTTGG+GGG | + | chr4.4:21670424-21670443 | None:intergenic | 45.0% |
| ! | TATGATGGAATGTGCTGCTG+AGG | - | chr4.4:21671660-21671679 | MS.gene053625:intron | 45.0% |
| ! | TCAGAACGAAGGGTGCATTT+GGG | + | chr4.4:21670435-21670454 | None:intergenic | 45.0% |
| ! | TTGCAATTCCAGAAGCACAG+TGG | - | chr4.4:21670713-21670732 | MS.gene053625:CDS | 45.0% |
| !! | GATGCTAGGGTGTTGGTAAT+TGG | - | chr4.4:21671490-21671509 | MS.gene053625:intron | 45.0% |
| !! | TGAGAGCACGCATGTTTTCA+AGG | + | chr4.4:21672194-21672213 | None:intergenic | 45.0% |
| !! | TGCTAGGGTGTTGGTAATTG+GGG | - | chr4.4:21671492-21671511 | MS.gene053625:intron | 45.0% |
| !!! | GAGGTTTTAAGGATCTCGAG+AGG | + | chr4.4:21670498-21670517 | None:intergenic | 45.0% |
| !!! | TTTTGGTGATGCTAGGGTGT+TGG | - | chr4.4:21671483-21671502 | MS.gene053625:intron | 45.0% |
| !! | TTAAAAAAAAAAATCTTATA+GGG | - | chr4.4:21670576-21670595 | MS.gene053625:CDS | 5.0% |
| !! | TTTAAAAAAAAAAATCTTAT+AGG | - | chr4.4:21670575-21670594 | MS.gene053625:CDS | 5.0% |
| AGCACGGGGAATTATTCAGG+AGG | - | chr4.4:21671918-21671937 | MS.gene053625:CDS | 50.0% | |
| AGTTTCTCGCGCATCTCAAC+AGG | + | chr4.4:21670694-21670713 | None:intergenic | 50.0% | |
| ATCACACCTCAGATGCTGCA+TGG | + | chr4.4:21672142-21672161 | None:intergenic | 50.0% | |
| ATTCCAAGGAACGTGGATCC+AGG | - | chr4.4:21671799-21671818 | MS.gene053625:CDS | 50.0% | |
| CAGAGCAGAATGAAGAAGGG+TGG | + | chr4.4:21670898-21670917 | None:intergenic | 50.0% | |
| CAGTGACTTCTCTAACACCG+CGG | + | chr4.4:21670843-21670862 | None:intergenic | 50.0% | |
| GAACGTGGAGATTCTTCCTC+CGG | - | chr4.4:21671735-21671754 | MS.gene053625:CDS | 50.0% | |
| GACTCCCTTGTTCTTGGAGA+AGG | - | chr4.4:21671262-21671281 | MS.gene053625:CDS | 50.0% | |
| GAGGCTGATGTGATCTTCAC+TGG | - | chr4.4:21671679-21671698 | MS.gene053625:intron | 50.0% | |
| GATCTCGAGAGGAGAAGGTT+TGG | + | chr4.4:21670487-21670506 | None:intergenic | 50.0% | |
| GGTCTTGACTCCCTTGTTCT+TGG | - | chr4.4:21671256-21671275 | MS.gene053625:CDS | 50.0% | |
| TAGTTCAGCTGCTGTGGAGT+TGG | - | chr4.4:21671435-21671454 | MS.gene053625:intron | 50.0% | |
| TCACACCTCAGATGCTGCAT+GGG | + | chr4.4:21672141-21672160 | None:intergenic | 50.0% | |
| TGGGGAGGGAATGTGGATTT+AGG | + | chr4.4:21670384-21670403 | None:intergenic | 50.0% | |
| TTGAGCAGGGGAGAATTTGG+CGG | + | chr4.4:21670358-21670377 | None:intergenic | 50.0% | |
| TTGGCCAAGGTGTGAGAAGA+CGG | - | chr4.4:21671758-21671777 | MS.gene053625:CDS | 50.0% | |
| ! | ATGCAGCATCTGAGGTGTGA+TGG | - | chr4.4:21672141-21672160 | MS.gene053625:CDS | 50.0% |
| ! | CAGAAAGCTATGGAAGCACG+GGG | - | chr4.4:21671904-21671923 | MS.gene053625:CDS | 50.0% |
| ! | GGAAGCACGGGGAATTATTC+AGG | - | chr4.4:21671915-21671934 | MS.gene053625:CDS | 50.0% |
| ! | TGCAGCATCTGAGGTGTGAT+GGG | - | chr4.4:21672142-21672161 | MS.gene053625:CDS | 50.0% |
| !! | TAGGGTGTTGGTAATTGGGG+CGG | - | chr4.4:21671495-21671514 | MS.gene053625:intron | 50.0% |
| !!! | AAGGGGTGCCAGGTTTTGAT+AGG | - | chr4.4:21671326-21671345 | MS.gene053625:CDS | 50.0% |
| ACTTGAGGCCACTGTGCTTC+TGG | + | chr4.4:21670724-21670743 | None:intergenic | 55.0% | |
| AGAGCCGTCTTCTCACACCT+TGG | + | chr4.4:21671765-21671784 | None:intergenic | 55.0% | |
| ATGGTCCCATGCAGCATCTG+AGG | - | chr4.4:21672133-21672152 | MS.gene053625:CDS | 55.0% | |
| CTTCTCACACCTTGGCCAAC+CGG | + | chr4.4:21671757-21671776 | None:intergenic | 55.0% | |
| GTAATTGGGGCGGGGAAGAT+GGG | - | chr4.4:21671505-21671524 | MS.gene053625:intron | 55.0% | |
| GTGGAGATTCTTCCTCCGGT+TGG | - | chr4.4:21671739-21671758 | MS.gene053625:CDS | 55.0% | |
| TAATTGGGGCGGGGAAGATG+GGG | - | chr4.4:21671506-21671525 | MS.gene053625:intron | 55.0% | |
| TTCTCAAGTTCCGACACGCC+TGG | + | chr4.4:21671820-21671839 | None:intergenic | 55.0% | |
| ! | AACACCGCGGTGTTGAGAGA+GGG | + | chr4.4:21670830-21670849 | None:intergenic | 55.0% |
| ! | ATTCTTCCTCCGGTTGGCCA+AGG | - | chr4.4:21671745-21671764 | MS.gene053625:CDS | 55.0% |
| ! | GGTGTTGAGAGAGGGCAACA+AGG | + | chr4.4:21670822-21670841 | None:intergenic | 55.0% |
| ! | TAACACCGCGGTGTTGAGAG+AGG | + | chr4.4:21670831-21670850 | None:intergenic | 55.0% |
| !! | AAATCTGGACAAGGGGTGCC+AGG | - | chr4.4:21671316-21671335 | MS.gene053625:CDS | 55.0% |
| !! | AGGGTGTTGGTAATTGGGGC+GGG | - | chr4.4:21671496-21671515 | MS.gene053625:intron | 55.0% |
| ACGCCTGGATCCACGTTCCT+TGG | + | chr4.4:21671805-21671824 | None:intergenic | 60.0% | |
| AGCAGGGGAGAATTTGGCGG+AGG | + | chr4.4:21670355-21670374 | None:intergenic | 60.0% | |
| GAACGTGGATCCAGGCGTGT+CGG | - | chr4.4:21671807-21671826 | MS.gene053625:CDS | 60.0% | |
| GAGTCGATGGGGAGGGAATG+TGG | + | chr4.4:21670391-21670410 | None:intergenic | 60.0% | |
| GGTAATTGGGGCGGGGAAGA+TGG | - | chr4.4:21671504-21671523 | MS.gene053625:intron | 60.0% | |
| GTTGCCCTCTCTCAACACCG+CGG | - | chr4.4:21670823-21670842 | MS.gene053625:CDS | 60.0% | |
| TTTGGCGGAGGAGCGAAGAG+TGG | + | chr4.4:21670343-21670362 | None:intergenic | 60.0% | |
| ! | GATGCGTGGTGACGTCTCGA+AGG | - | chr4.4:21672056-21672075 | MS.gene053625:intron | 60.0% |
| !! | GGGTGTTGGTAATTGGGGCG+GGG | - | chr4.4:21671497-21671516 | MS.gene053625:intron | 60.0% |
| CTCACACCTTGGCCAACCGG+AGG | + | chr4.4:21671754-21671773 | None:intergenic | 65.0% | |
| GCGAAGAGTGGCGGTGGAGG+AGG | + | chr4.4:21670331-21670350 | None:intergenic | 70.0% | |
| GGAGCGAAGAGTGGCGGTGG+AGG | + | chr4.4:21670334-21670353 | None:intergenic | 70.0% | |
| GGAGGAGCGAAGAGTGGCGG+TGG | + | chr4.4:21670337-21670356 | None:intergenic | 70.0% | |
| GGCGGAGGAGCGAAGAGTGG+CGG | + | chr4.4:21670340-21670359 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 21670306 | 21672293 | 21670306 | ID=MS.gene053625 |
| chr4.4 | mRNA | 21670306 | 21672293 | 21670306 | ID=MS.gene053625.t1;Parent=MS.gene053625 |
| chr4.4 | exon | 21672071 | 21672293 | 21672071 | ID=MS.gene053625.t1.exon1;Parent=MS.gene053625.t1 |
| chr4.4 | CDS | 21672071 | 21672293 | 21672071 | ID=cds.MS.gene053625.t1;Parent=MS.gene053625.t1 |
| chr4.4 | exon | 21671723 | 21671964 | 21671723 | ID=MS.gene053625.t1.exon2;Parent=MS.gene053625.t1 |
| chr4.4 | CDS | 21671723 | 21671964 | 21671723 | ID=cds.MS.gene053625.t1;Parent=MS.gene053625.t1 |
| chr4.4 | exon | 21670306 | 21671433 | 21670306 | ID=MS.gene053625.t1.exon3;Parent=MS.gene053625.t1 |
| chr4.4 | CDS | 21670306 | 21671433 | 21670306 | ID=cds.MS.gene053625.t1;Parent=MS.gene053625.t1 |
| Gene Sequence |
| Protein sequence |
