Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063180.t1 | KEH36054.1 | 96.1 | 412 | 16 | 0 | 1 | 412 | 1 | 412 | 1.70E-191 | 678.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063180.t1 | Q8W4K5 | 37.7 | 459 | 202 | 13 | 28 | 405 | 25 | 480 | 4.7e-41 | 170.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063180.t1 | G7ZWI5 | 96.1 | 412 | 16 | 0 | 1 | 412 | 1 | 412 | 1.2e-191 | 678.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054614 | MS.gene063180 | 0.801296 | 9.63E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063180.t1 | MTR_3g110182 | 96.117 | 412 | 16 | 0 | 1 | 412 | 1 | 412 | 0.0 | 753 |
| MS.gene063180.t1 | MTR_3g110182 | 96.812 | 345 | 11 | 0 | 3 | 347 | 1 | 345 | 0.0 | 679 |
| MS.gene063180.t1 | MTR_4g039910 | 75.000 | 368 | 44 | 5 | 1 | 365 | 1 | 323 | 6.31e-164 | 464 |
| MS.gene063180.t1 | MTR_5g012870 | 36.386 | 415 | 183 | 11 | 12 | 405 | 24 | 378 | 5.18e-58 | 195 |
| MS.gene063180.t1 | MTR_7g095500 | 38.274 | 452 | 196 | 12 | 26 | 400 | 13 | 458 | 4.35e-57 | 197 |
| MS.gene063180.t1 | MTR_1g071450 | 39.381 | 452 | 191 | 13 | 33 | 405 | 26 | 473 | 6.43e-57 | 194 |
| MS.gene063180.t1 | MTR_1g041395 | 40.132 | 456 | 188 | 13 | 33 | 409 | 13 | 462 | 6.57e-52 | 181 |
| MS.gene063180.t1 | MTR_1g041395 | 39.780 | 455 | 190 | 13 | 33 | 409 | 13 | 461 | 6.78e-52 | 181 |
| MS.gene063180.t1 | MTR_1g041395 | 38.312 | 462 | 194 | 13 | 33 | 409 | 13 | 468 | 1.61e-47 | 169 |
| MS.gene063180.t1 | MTR_1g041395 | 47.138 | 297 | 124 | 7 | 142 | 409 | 39 | 331 | 2.36e-47 | 165 |
| MS.gene063180.t1 | MTR_1g102980 | 40.553 | 434 | 194 | 11 | 33 | 409 | 22 | 448 | 8.90e-46 | 164 |
| MS.gene063180.t1 | MTR_1g102980 | 46.735 | 291 | 130 | 5 | 142 | 409 | 35 | 323 | 1.44e-41 | 150 |
| MS.gene063180.t1 | MTR_4g129510 | 26.957 | 345 | 217 | 9 | 74 | 405 | 15 | 337 | 6.89e-15 | 75.9 |
| MS.gene063180.t1 | MTR_4g129510 | 26.943 | 386 | 240 | 12 | 34 | 405 | 11 | 368 | 2.00e-14 | 74.7 |
| MS.gene063180.t1 | MTR_4g129510 | 34.034 | 238 | 140 | 5 | 34 | 267 | 11 | 235 | 2.07e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063180.t1 | AT4G32780 | 51.852 | 405 | 162 | 9 | 13 | 406 | 13 | 395 | 9.68e-88 | 272 |
| MS.gene063180.t1 | AT4G32780 | 51.852 | 405 | 162 | 9 | 13 | 406 | 32 | 414 | 2.21e-87 | 272 |
| MS.gene063180.t1 | AT3G22810 | 38.889 | 450 | 191 | 12 | 33 | 405 | 18 | 460 | 1.12e-71 | 233 |
| MS.gene063180.t1 | AT4G14740 | 38.829 | 461 | 197 | 12 | 25 | 405 | 10 | 465 | 1.04e-69 | 228 |
| MS.gene063180.t1 | AT4G14740 | 38.829 | 461 | 197 | 12 | 25 | 405 | 10 | 465 | 1.04e-69 | 228 |
| MS.gene063180.t1 | AT3G22810 | 46.392 | 291 | 128 | 5 | 142 | 405 | 33 | 322 | 1.45e-64 | 210 |
| MS.gene063180.t1 | AT4G14740 | 46.392 | 291 | 128 | 5 | 142 | 405 | 37 | 326 | 2.25e-62 | 204 |
| MS.gene063180.t1 | AT5G43870 | 40.367 | 436 | 185 | 13 | 33 | 406 | 22 | 444 | 1.53e-61 | 206 |
| MS.gene063180.t1 | AT3G22810 | 39.846 | 389 | 151 | 11 | 33 | 345 | 18 | 399 | 2.41e-54 | 186 |
| MS.gene063180.t1 | AT4G14740 | 38.903 | 401 | 161 | 11 | 25 | 346 | 10 | 405 | 1.35e-52 | 181 |
| MS.gene063180.t1 | AT5G47440 | 34.236 | 406 | 195 | 11 | 20 | 405 | 30 | 383 | 6.47e-50 | 174 |
| MS.gene063180.t1 | AT4G17350 | 34.450 | 418 | 195 | 13 | 15 | 407 | 25 | 388 | 2.13e-49 | 172 |
| MS.gene063180.t1 | AT3G63300 | 39.177 | 462 | 193 | 15 | 27 | 405 | 24 | 480 | 2.07e-48 | 172 |
| MS.gene063180.t1 | AT4G16670 | 33.676 | 389 | 196 | 9 | 38 | 406 | 63 | 409 | 1.99e-45 | 162 |
| MS.gene063180.t1 | AT5G43870 | 40.476 | 378 | 145 | 13 | 33 | 346 | 22 | 383 | 1.28e-40 | 149 |
| MS.gene063180.t1 | AT3G63300 | 46.528 | 288 | 127 | 7 | 142 | 405 | 38 | 322 | 2.46e-40 | 147 |
| MS.gene063180.t1 | AT4G16670 | 33.537 | 328 | 156 | 9 | 38 | 345 | 63 | 348 | 1.33e-30 | 120 |
| MS.gene063180.t1 | AT4G32780 | 48.000 | 250 | 109 | 6 | 13 | 258 | 32 | 264 | 8.26e-29 | 114 |
| MS.gene063180.t1 | AT4G16670 | 31.373 | 357 | 154 | 10 | 38 | 345 | 63 | 377 | 4.20e-26 | 108 |
| MS.gene063180.t1 | AT5G57770 | 30.370 | 405 | 247 | 13 | 12 | 404 | 5 | 386 | 3.46e-21 | 95.1 |
| MS.gene063180.t1 | AT5G57770 | 31.563 | 339 | 205 | 9 | 12 | 341 | 5 | 325 | 2.12e-19 | 89.0 |
Find 85 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCAAGATGTTTGCTTCTT+TGG | 0.173797 | 3.3:-90634579 | None:intergenic |
| AAGCCATGGTAGGGTTCTTT+TGG | 0.263821 | 3.3:-90633780 | None:intergenic |
| CAATATTAATTCAAATTTGC+AGG | 0.290334 | 3.3:+90634820 | MS.gene063180:CDS |
| CATTGAGATTGCAGAAGATA+TGG | 0.299814 | 3.3:+90633846 | MS.gene063180:CDS |
| ATAGATTCAGTTGGGGTATC+AGG | 0.319275 | 3.3:-90632844 | None:intergenic |
| TGATACCCCAACTGAATCTA+TGG | 0.354845 | 3.3:+90632846 | MS.gene063180:CDS |
| AGTCAAAACTTGCTGAGAAA+TGG | 0.357192 | 3.3:+90633467 | MS.gene063180:CDS |
| AGTCAATTGCTGTTATGATT+TGG | 0.358394 | 3.3:-90633882 | None:intergenic |
| AGAAGATATGGGAGCTGAAC+AGG | 0.370221 | 3.3:+90633858 | MS.gene063180:CDS |
| GTCAAAACTTGCTGAGAAAT+GGG | 0.371194 | 3.3:+90633468 | MS.gene063180:CDS |
| GCACTGGACTGTGTCTTTAG+AGG | 0.393135 | 3.3:+90634602 | MS.gene063180:CDS |
| TAAAACCCTTGGTATAAAAC+TGG | 0.394669 | 3.3:-90632981 | None:intergenic |
| CGCGGCAATTCAACATGTAC+TGG | 0.395036 | 3.3:-90635259 | None:intergenic |
| GCCGGTGGAGGTCGTAGAAT+TGG | 0.412677 | 3.3:-90632929 | None:intergenic |
| TGCTACTTTGAAGGCACGTC+TGG | 0.412837 | 3.3:+90634502 | MS.gene063180:CDS |
| ATGAAAAGCAAGCATATTGC+AGG | 0.418625 | 3.3:+90634969 | MS.gene063180:CDS |
| AGACAAACAGTTCTGGTTAG+AGG | 0.420246 | 3.3:+90635232 | MS.gene063180:CDS |
| TTTGTTTCGCTACTTTCTCT+TGG | 0.421551 | 3.3:-90633261 | None:intergenic |
| GTAAAGAAGACAAACAGTTC+TGG | 0.435761 | 3.3:+90635225 | MS.gene063180:CDS |
| CTTCTCAAACGTACAAGAAA+AGG | 0.445894 | 3.3:+90634632 | MS.gene063180:CDS |
| GCGAGGAGCTGCTACTTTGA+AGG | 0.446885 | 3.3:+90634493 | MS.gene063180:CDS |
| GCACGTCTGGAGAAAGGGCT+TGG | 0.450167 | 3.3:+90634515 | MS.gene063180:CDS |
| TTTCCCTTCCGGGCCAAGCT+GGG | 0.455831 | 3.3:-90635127 | None:intergenic |
| ATTGGTGCTGTGCAGTGCTT+TGG | 0.456986 | 3.3:-90632911 | None:intergenic |
| CTTTACAGGAGCTTGATAAG+AGG | 0.459858 | 3.3:+90633595 | MS.gene063180:CDS |
| GGAACTCCATAGATTCAGTT+GGG | 0.462785 | 3.3:-90632852 | None:intergenic |
| TGGAGTTCCTTGCTAGATCA+TGG | 0.476162 | 3.3:+90632866 | MS.gene063180:CDS |
| TAGAGTCATAATATCTCCAT+TGG | 0.480171 | 3.3:-90633923 | None:intergenic |
| AGCTTGGCCCGGAAGGGAAA+AGG | 0.486161 | 3.3:+90635130 | MS.gene063180:CDS |
| CCATAACAGGAGTTCTTCAC+TGG | 0.490229 | 3.3:+90634783 | MS.gene063180:intron |
| TTGAAGGCACGTCTGGAGAA+AGG | 0.490313 | 3.3:+90634509 | MS.gene063180:CDS |
| AGCAAACATCTTGACAGCAC+TGG | 0.491176 | 3.3:+90634586 | MS.gene063180:CDS |
| TTGAATATCAATGCCGGTGG+AGG | 0.500588 | 3.3:-90632941 | None:intergenic |
| AGCTGCAACTGCTGCAACAG+CGG | 0.501387 | 3.3:-90633725 | None:intergenic |
| TGAAGGCACGTCTGGAGAAA+GGG | 0.507302 | 3.3:+90634510 | MS.gene063180:CDS |
| ATATCCCAGCTTGGCCCGGA+AGG | 0.509324 | 3.3:+90635123 | MS.gene063180:CDS |
| ATTGAGATTGCAGAAGATAT+GGG | 0.522295 | 3.3:+90633847 | MS.gene063180:CDS |
| CACGCCGCAGTATCTGTAGT+TGG | 0.523810 | 3.3:+90633694 | MS.gene063180:CDS |
| AGCGATATCCCAGCTTGGCC+CGG | 0.529305 | 3.3:+90635119 | MS.gene063180:CDS |
| GACAAACAGTTCTGGTTAGA+GGG | 0.532361 | 3.3:+90635233 | MS.gene063180:CDS |
| GGTGCGGCGCAAGATGATGC+AGG | 0.533572 | 3.3:-90632823 | None:intergenic |
| TCTGATACCTGTGGCTGCTC+CGG | 0.534348 | 3.3:-90633950 | None:intergenic |
| ACCAATTCTACGACCTCCAC+CGG | 0.534512 | 3.3:+90632928 | MS.gene063180:CDS |
| TTTACAGGAGCTTGATAAGA+GGG | 0.537169 | 3.3:+90633596 | MS.gene063180:CDS |
| TAAATGCTCAGTTCTTCAGC+TGG | 0.537790 | 3.3:+90632768 | MS.gene063180:CDS |
| TTGATAAGAGGGAGGACTAC+GGG | 0.539110 | 3.3:+90633607 | MS.gene063180:CDS |
| CCGCACTTCTCCTCAACAGT+TGG | 0.540993 | 3.3:-90634551 | None:intergenic |
| TTGGTATAAAACTGGTCGGA+AGG | 0.546069 | 3.3:-90632973 | None:intergenic |
| AGGAACTCCATAGATTCAGT+TGG | 0.556560 | 3.3:-90632853 | None:intergenic |
| CTTGATAAGAGGGAGGACTA+CGG | 0.557702 | 3.3:+90633606 | MS.gene063180:CDS |
| TGCAATTGCAGCAGAAGCCA+TGG | 0.565370 | 3.3:-90633794 | None:intergenic |
| GGAATTCTGGAGAAAGTGCT+TGG | 0.567645 | 3.3:-90633439 | None:intergenic |
| TATGTTTAGCAGCTATCTAA+CGG | 0.568335 | 3.3:+90633219 | MS.gene063180:intron |
| GGTTGAAAGATCAGAAGGAG+AGG | 0.575835 | 3.3:+90633635 | MS.gene063180:CDS |
| AACTAAATGGCAGCATTGCG+AGG | 0.578223 | 3.3:+90634476 | MS.gene063180:intron |
| TGGTATAAAACTGGTCGGAA+GGG | 0.579907 | 3.3:-90632972 | None:intergenic |
| TAAAAGTTGAATATCAATGC+CGG | 0.583139 | 3.3:-90632947 | None:intergenic |
| TTCAGTATGTTACATTGGCG+CGG | 0.587089 | 3.3:-90635277 | None:intergenic |
| CTAACAGCCGGAGCAGCCAC+AGG | 0.589341 | 3.3:+90633943 | MS.gene063180:CDS |
| TGCAATCTCAATGCAGTGAG+AGG | 0.594432 | 3.3:-90633836 | None:intergenic |
| ATTGCAGCAGAAGCCATGGT+AGG | 0.594587 | 3.3:-90633790 | None:intergenic |
| TGTGCAGCGATATCCCAGCT+TGG | 0.596256 | 3.3:+90635114 | MS.gene063180:CDS |
| TATCCCAGCTTGGCCCGGAA+GGG | 0.598830 | 3.3:+90635124 | MS.gene063180:CDS |
| TTCAGTTGGGGTATCAGGTG+CGG | 0.602534 | 3.3:-90632839 | None:intergenic |
| GATATTATGACTCTAACAGC+CGG | 0.602938 | 3.3:+90633931 | MS.gene063180:CDS |
| ACCCTTGGTATAAAACTGGT+CGG | 0.605695 | 3.3:-90632977 | None:intergenic |
| TTGCAGCAGAAGCCATGGTA+GGG | 0.605912 | 3.3:-90633789 | None:intergenic |
| AAAATGGCAGATATAGTCAC+CGG | 0.606175 | 3.3:+90635089 | MS.gene063180:intron |
| GAGGGAGGACTACGGGTAGG+TGG | 0.615301 | 3.3:+90633614 | MS.gene063180:CDS |
| AAGAGAAAGTAGCGAAACAA+AGG | 0.615309 | 3.3:+90633263 | MS.gene063180:CDS |
| TGGGATATCGCTGCACACTC+CGG | 0.618172 | 3.3:-90635108 | None:intergenic |
| AAAGACTCCATGATCTAGCA+AGG | 0.625812 | 3.3:-90632873 | None:intergenic |
| CTGGACTGTGTCTTTAGAGG+AGG | 0.632407 | 3.3:+90634605 | MS.gene063180:CDS |
| TAGGTGGTTGAAAGATCAGA+AGG | 0.633447 | 3.3:+90633630 | MS.gene063180:CDS |
| TCAAAACTTGCTGAGAAATG+GGG | 0.639012 | 3.3:+90633469 | MS.gene063180:CDS |
| TACTACGATTCCAACTGTTG+AGG | 0.640288 | 3.3:+90634541 | MS.gene063180:CDS |
| TAAGAGGGAGGACTACGGGT+AGG | 0.643903 | 3.3:+90633611 | MS.gene063180:CDS |
| ACAGGAGCTTGATAAGAGGG+AGG | 0.655763 | 3.3:+90633599 | MS.gene063180:CDS |
| AAGTTGAATATCAATGCCGG+TGG | 0.660607 | 3.3:-90632944 | None:intergenic |
| CAACCAAAAGAACCCTACCA+TGG | 0.662228 | 3.3:+90633777 | MS.gene063180:CDS |
| AGATTAATAGAATTTGAATG+CGG | 0.671794 | 3.3:+90635200 | MS.gene063180:CDS |
| GGAAGGGAAAAGGAAGACAA+CGG | 0.672432 | 3.3:+90635140 | MS.gene063180:CDS |
| GAACTCCATAGATTCAGTTG+GGG | 0.682676 | 3.3:-90632851 | None:intergenic |
| AACACCAACTACAGATACTG+CGG | 0.695742 | 3.3:-90633698 | None:intergenic |
| CCAACTGTTGAGGAGAAGTG+CGG | 0.712451 | 3.3:+90634551 | MS.gene063180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCTTTAGTATATATAAT+TGG | + | chr3.3:90633372-90633391 | MS.gene063180:intron | 10.0% |
| !! | AAATTTATTGATATTTAAAC+TGG | + | chr3.3:90634190-90634209 | MS.gene063180:intron | 10.0% |
| !! | ATAAAATACAATGAACTAAA+TGG | + | chr3.3:90634463-90634482 | MS.gene063180:intron | 15.0% |
| !! | AATTAAACTGTTAGTAAACA+AGG | - | chr3.3:90634013-90634032 | None:intergenic | 20.0% |
| !! | AGATTAATAGAATTTGAATG+CGG | + | chr3.3:90635200-90635219 | MS.gene063180:CDS | 20.0% |
| !! | ATAAATTTAGTTAAGCTCAA+AGG | + | chr3.3:90634320-90634339 | MS.gene063180:intron | 20.0% |
| !! | ATTTATATAGCCATTAAAAC+TGG | - | chr3.3:90634306-90634325 | None:intergenic | 20.0% |
| !! | CAAATACTCTACAAATTAAA+GGG | - | chr3.3:90634217-90634236 | None:intergenic | 20.0% |
| !! | CAATATTAATTCAAATTTGC+AGG | + | chr3.3:90634820-90634839 | MS.gene063180:CDS | 20.0% |
| !! | TCAAATACTCTACAAATTAA+AGG | - | chr3.3:90634218-90634237 | None:intergenic | 20.0% |
| !!! | AAGTTTTGTATACTGAAATT+TGG | - | chr3.3:90635023-90635042 | None:intergenic | 20.0% |
| !!! | AATATACCAATTTTTGCTTT+TGG | + | chr3.3:90634139-90634158 | MS.gene063180:intron | 20.0% |
| !!! | TATGGACATTTAAAATAGTA+TGG | - | chr3.3:90634768-90634787 | None:intergenic | 20.0% |
| ! | ATTAAGTATGAGCAATGTAA+TGG | + | chr3.3:90634362-90634381 | MS.gene063180:intron | 25.0% |
| ! | ATTTAAGAAAACGTTCTTAC+AGG | - | chr3.3:90633024-90633043 | None:intergenic | 25.0% |
| ! | CAAAAATTGGTATATTTGCA+GGG | - | chr3.3:90634135-90634154 | None:intergenic | 25.0% |
| ! | TAAAAGTTGAATATCAATGC+CGG | - | chr3.3:90632950-90632969 | None:intergenic | 25.0% |
| ! | TAGGATTCTTCAATATTAAG+AGG | + | chr3.3:90633133-90633152 | MS.gene063180:intron | 25.0% |
| ! | TCTTAATATTGAAGAATCCT+AGG | - | chr3.3:90633134-90633153 | None:intergenic | 25.0% |
| !! | CGTAAACTGATTTAAACATT+TGG | - | chr3.3:90634729-90634748 | None:intergenic | 25.0% |
| !!! | AATATGCTTGCTTTTCATTT+TGG | - | chr3.3:90634967-90634986 | None:intergenic | 25.0% |
| !!! | CTATTTTAAATGTCCATAAC+AGG | + | chr3.3:90634770-90634789 | MS.gene063180:intron | 25.0% |
| !!! | GATAGCTTTAACTATGTTTT+TGG | + | chr3.3:90634047-90634066 | MS.gene063180:intron | 25.0% |
| !!! | TGTGATTTGTTAATGAATGT+AGG | - | chr3.3:90634864-90634883 | None:intergenic | 25.0% |
| AACCAATACATAAAAGCAAC+AGG | - | chr3.3:90633180-90633199 | None:intergenic | 30.0% | |
| ACATGAGTAGTAAGTAAACT+AGG | - | chr3.3:90633291-90633310 | None:intergenic | 30.0% | |
| ATTGAGATTGCAGAAGATAT+GGG | + | chr3.3:90633847-90633866 | MS.gene063180:CDS | 30.0% | |
| CTACTCATGTTAAACTTGTA+CGG | + | chr3.3:90633301-90633320 | MS.gene063180:intron | 30.0% | |
| GCAAAAATTGGTATATTTGC+AGG | - | chr3.3:90634136-90634155 | None:intergenic | 30.0% | |
| GCTATTAATGCAAAAACCAA+TGG | + | chr3.3:90633907-90633926 | MS.gene063180:CDS | 30.0% | |
| TAAAACCCTTGGTATAAAAC+TGG | - | chr3.3:90632984-90633003 | None:intergenic | 30.0% | |
| TAGAAATGAACTCAGTTTGT+AGG | - | chr3.3:90634408-90634427 | None:intergenic | 30.0% | |
| TAGAGTCATAATATCTCCAT+TGG | - | chr3.3:90633926-90633945 | None:intergenic | 30.0% | |
| TATGTTTAGCAGCTATCTAA+CGG | + | chr3.3:90633219-90633238 | MS.gene063180:intron | 30.0% | |
| TGAAGTCATTGTTACAAACA+TGG | - | chr3.3:90634676-90634695 | None:intergenic | 30.0% | |
| TGTTACTGTAAGCAATGTTA+AGG | + | chr3.3:90635056-90635075 | MS.gene063180:intron | 30.0% | |
| TTAAGGTATGGCCTATAAAA+TGG | + | chr3.3:90635073-90635092 | MS.gene063180:intron | 30.0% | |
| ! | AGTCAATTGCTGTTATGATT+TGG | - | chr3.3:90633885-90633904 | None:intergenic | 30.0% |
| !!! | GACTATATCTGCCATTTTAT+AGG | - | chr3.3:90635087-90635106 | None:intergenic | 30.0% |
| !!! | TTCCTGTTGCTTTTATGTAT+TGG | + | chr3.3:90633175-90633194 | MS.gene063180:intron | 30.0% |
| AAAATGGCAGATATAGTCAC+CGG | + | chr3.3:90635089-90635108 | MS.gene063180:intron | 35.0% | |
| AAGAGAAAGTAGCGAAACAA+AGG | + | chr3.3:90633263-90633282 | MS.gene063180:CDS | 35.0% | |
| ACAAATCACACACGAGTTAT+TGG | + | chr3.3:90634874-90634893 | MS.gene063180:intron | 35.0% | |
| AGAGGAAAAAACAGGAAATC+AGG | + | chr3.3:90633653-90633672 | MS.gene063180:CDS | 35.0% | |
| ATGAAAAGCAAGCATATTGC+AGG | + | chr3.3:90634969-90634988 | MS.gene063180:CDS | 35.0% | |
| CAACGACCAAAAGCAAAAAT+TGG | - | chr3.3:90634148-90634167 | None:intergenic | 35.0% | |
| CAGGAACACAAGACAATATT+AGG | - | chr3.3:90633161-90633180 | None:intergenic | 35.0% | |
| CATAGTAATCGTTCATATGC+AGG | + | chr3.3:90633400-90633419 | MS.gene063180:intron | 35.0% | |
| CATTGAGATTGCAGAAGATA+TGG | + | chr3.3:90633846-90633865 | MS.gene063180:CDS | 35.0% | |
| CTATTCAACACAATGACTAC+AGG | + | chr3.3:90634935-90634954 | MS.gene063180:intron | 35.0% | |
| CTGTAAGCAATGTTAAGGTA+TGG | + | chr3.3:90635061-90635080 | MS.gene063180:intron | 35.0% | |
| CTTCTCAAACGTACAAGAAA+AGG | + | chr3.3:90634632-90634651 | MS.gene063180:CDS | 35.0% | |
| GATATTATGACTCTAACAGC+CGG | + | chr3.3:90633931-90633950 | MS.gene063180:CDS | 35.0% | |
| GTAAAGAAGACAAACAGTTC+TGG | + | chr3.3:90635225-90635244 | MS.gene063180:CDS | 35.0% | |
| TATAGCCATTAAAACTGGTC+TGG | - | chr3.3:90634301-90634320 | None:intergenic | 35.0% | |
| TGTCAAGATGTTTGCTTCTT+TGG | - | chr3.3:90634582-90634601 | None:intergenic | 35.0% | |
| TGTTGCATTGCATTGTGAAA+AGG | - | chr3.3:90633070-90633089 | None:intergenic | 35.0% | |
| TTTACAGGAGCTTGATAAGA+GGG | + | chr3.3:90633596-90633615 | MS.gene063180:CDS | 35.0% | |
| ! | ATAGCCATTAAAACTGGTCT+GGG | - | chr3.3:90634300-90634319 | None:intergenic | 35.0% |
| ! | TCTTACAGGATCTTCTTTTG+AGG | - | chr3.3:90633010-90633029 | None:intergenic | 35.0% |
| ! | TTTGTTTCGCTACTTTCTCT+TGG | - | chr3.3:90633264-90633283 | None:intergenic | 35.0% |
| ! | TTTTTGCTCATCAGCTTTAC+AGG | + | chr3.3:90633581-90633600 | MS.gene063180:intron | 35.0% |
| !! | AGTCAAAACTTGCTGAGAAA+TGG | + | chr3.3:90633467-90633486 | MS.gene063180:CDS | 35.0% |
| !! | ATTTCTCAGCAAGTTTTGAC+TGG | - | chr3.3:90633468-90633487 | None:intergenic | 35.0% |
| !! | GGCAAAAAGAGAGCATATTT+TGG | + | chr3.3:90635161-90635180 | MS.gene063180:CDS | 35.0% |
| !! | GTCAAAACTTGCTGAGAAAT+GGG | + | chr3.3:90633468-90633487 | MS.gene063180:CDS | 35.0% |
| !! | TCAAAACTTGCTGAGAAATG+GGG | + | chr3.3:90633469-90633488 | MS.gene063180:CDS | 35.0% |
| !! | TTTTGACTGGAAAGGAATTC+TGG | - | chr3.3:90633455-90633474 | None:intergenic | 35.0% |
| AAAGACTCCATGATCTAGCA+AGG | - | chr3.3:90632876-90632895 | None:intergenic | 40.0% | |
| AACACCAACTACAGATACTG+CGG | - | chr3.3:90633701-90633720 | None:intergenic | 40.0% | |
| AAGTTGAATATCAATGCCGG+TGG | - | chr3.3:90632947-90632966 | None:intergenic | 40.0% | |
| ACCCTTGGTATAAAACTGGT+CGG | - | chr3.3:90632980-90632999 | None:intergenic | 40.0% | |
| ACTTCTATCTACAGCGTACA+TGG | - | chr3.3:90633111-90633130 | None:intergenic | 40.0% | |
| AGGAACTCCATAGATTCAGT+TGG | - | chr3.3:90632856-90632875 | None:intergenic | 40.0% | |
| CTTTACAGGAGCTTGATAAG+AGG | + | chr3.3:90633595-90633614 | MS.gene063180:CDS | 40.0% | |
| GAACTCCATAGATTCAGTTG+GGG | - | chr3.3:90632854-90632873 | None:intergenic | 40.0% | |
| GGAACTCCATAGATTCAGTT+GGG | - | chr3.3:90632855-90632874 | None:intergenic | 40.0% | |
| TAAATGCTCAGTTCTTCAGC+TGG | + | chr3.3:90632768-90632787 | MS.gene063180:CDS | 40.0% | |
| TACTACGATTCCAACTGTTG+AGG | + | chr3.3:90634541-90634560 | MS.gene063180:CDS | 40.0% | |
| TAGGTGGTTGAAAGATCAGA+AGG | + | chr3.3:90633630-90633649 | MS.gene063180:CDS | 40.0% | |
| TCAGAAGGAGAGGAAAAAAC+AGG | + | chr3.3:90633645-90633664 | MS.gene063180:CDS | 40.0% | |
| TGATACCCCAACTGAATCTA+TGG | + | chr3.3:90632846-90632865 | MS.gene063180:CDS | 40.0% | |
| TGGTATAAAACTGGTCGGAA+GGG | - | chr3.3:90632975-90632994 | None:intergenic | 40.0% | |
| TTGGTATAAAACTGGTCGGA+AGG | - | chr3.3:90632976-90632995 | None:intergenic | 40.0% | |
| ! | AGACAAACAGTTCTGGTTAG+AGG | + | chr3.3:90635232-90635251 | MS.gene063180:CDS | 40.0% |
| ! | ATAGATTCAGTTGGGGTATC+AGG | - | chr3.3:90632847-90632866 | None:intergenic | 40.0% |
| ! | GACAAACAGTTCTGGTTAGA+GGG | + | chr3.3:90635233-90635252 | MS.gene063180:CDS | 40.0% |
| ! | TAGCCATTAAAACTGGTCTG+GGG | - | chr3.3:90634299-90634318 | None:intergenic | 40.0% |
| ! | TTGGTTGGGATTAGGCTTTT+CGG | - | chr3.3:90633764-90633783 | None:intergenic | 40.0% |
| !! | AAACCCCAGACCAGTTTTAA+TGG | + | chr3.3:90634293-90634312 | MS.gene063180:intron | 40.0% |
| !! | ACTTTAGAGTCTGATACCTG+TGG | - | chr3.3:90633962-90633981 | None:intergenic | 40.0% |
| !! | ATGGTAGGGTTCTTTTGGTT+GGG | - | chr3.3:90633778-90633797 | None:intergenic | 40.0% |
| !! | TCCGACCAGTTTTATACCAA+GGG | + | chr3.3:90632976-90632995 | MS.gene063180:CDS | 40.0% |
| !! | TTCCGACCAGTTTTATACCA+AGG | + | chr3.3:90632975-90632994 | MS.gene063180:CDS | 40.0% |
| !!! | TCAGCAAGTTTTGACTGGAA+AGG | - | chr3.3:90633463-90633482 | None:intergenic | 40.0% |
| !!! | TTTTGAGGCAGTAAAACCCT+TGG | - | chr3.3:90632995-90633014 | None:intergenic | 40.0% |
| AACTAAATGGCAGCATTGCG+AGG | + | chr3.3:90634476-90634495 | MS.gene063180:intron | 45.0% | |
| ACGCTGTAGATAGAAGTCCT+AGG | + | chr3.3:90633114-90633133 | MS.gene063180:intron | 45.0% | |
| AGAAGATATGGGAGCTGAAC+AGG | + | chr3.3:90633858-90633877 | MS.gene063180:CDS | 45.0% | |
| AGCAAACATCTTGACAGCAC+TGG | + | chr3.3:90634586-90634605 | MS.gene063180:CDS | 45.0% | |
| CAACCAAAAGAACCCTACCA+TGG | + | chr3.3:90633777-90633796 | MS.gene063180:CDS | 45.0% | |
| CCAGTGAAGAACTCCTGTTA+TGG | - | chr3.3:90634786-90634805 | None:intergenic | 45.0% | |
| CCATAACAGGAGTTCTTCAC+TGG | + | chr3.3:90634783-90634802 | MS.gene063180:intron | 45.0% | |
| CTGGGGTTTGACGTTTACAT+TGG | - | chr3.3:90634282-90634301 | None:intergenic | 45.0% | |
| CTTGATAAGAGGGAGGACTA+CGG | + | chr3.3:90633606-90633625 | MS.gene063180:CDS | 45.0% | |
| GGAAGGGAAAAGGAAGACAA+CGG | + | chr3.3:90635140-90635159 | MS.gene063180:CDS | 45.0% | |
| GGTTGAAAGATCAGAAGGAG+AGG | + | chr3.3:90633635-90633654 | MS.gene063180:CDS | 45.0% | |
| TGCAATCTCAATGCAGTGAG+AGG | - | chr3.3:90633839-90633858 | None:intergenic | 45.0% | |
| TGGAGTTCCTTGCTAGATCA+TGG | + | chr3.3:90632866-90632885 | MS.gene063180:CDS | 45.0% | |
| TTGAATATCAATGCCGGTGG+AGG | - | chr3.3:90632944-90632963 | None:intergenic | 45.0% | |
| TTGATAAGAGGGAGGACTAC+GGG | + | chr3.3:90633607-90633626 | MS.gene063180:CDS | 45.0% | |
| ! | AAGCCATGGTAGGGTTCTTT+TGG | - | chr3.3:90633783-90633802 | None:intergenic | 45.0% |
| ! | CATGGTAGGGTTCTTTTGGT+TGG | - | chr3.3:90633779-90633798 | None:intergenic | 45.0% |
| ! | GTTGTCTTCCTTTTCCCTTC+CGG | - | chr3.3:90635141-90635160 | None:intergenic | 45.0% |
| ! | TTGTCTTCCTTTTCCCTTCC+GGG | - | chr3.3:90635140-90635159 | None:intergenic | 45.0% |
| !! | GGAATTCTGGAGAAAGTGCT+TGG | - | chr3.3:90633442-90633461 | None:intergenic | 45.0% |
| !! | GGGTTCTTTTGGTTGGGATT+AGG | - | chr3.3:90633772-90633791 | None:intergenic | 45.0% |
| ACAGGAGCTTGATAAGAGGG+AGG | + | chr3.3:90633599-90633618 | MS.gene063180:CDS | 50.0% | |
| ACCAATTCTACGACCTCCAC+CGG | + | chr3.3:90632928-90632947 | MS.gene063180:CDS | 50.0% | |
| ATTGCAGCAGAAGCCATGGT+AGG | - | chr3.3:90633793-90633812 | None:intergenic | 50.0% | |
| CCAACTGTTGAGGAGAAGTG+CGG | + | chr3.3:90634551-90634570 | MS.gene063180:CDS | 50.0% | |
| CGCGGCAATTCAACATGTAC+TGG | - | chr3.3:90635262-90635281 | None:intergenic | 50.0% | |
| GCACTGGACTGTGTCTTTAG+AGG | + | chr3.3:90634602-90634621 | MS.gene063180:CDS | 50.0% | |
| TGCAATTGCAGCAGAAGCCA+TGG | - | chr3.3:90633797-90633816 | None:intergenic | 50.0% | |
| TTGCAGCAGAAGCCATGGTA+GGG | - | chr3.3:90633792-90633811 | None:intergenic | 50.0% | |
| ! | CTGGACTGTGTCTTTAGAGG+AGG | + | chr3.3:90634605-90634624 | MS.gene063180:CDS | 50.0% |
| ! | TGAAGGCACGTCTGGAGAAA+GGG | + | chr3.3:90634510-90634529 | MS.gene063180:CDS | 50.0% |
| ! | TTCAGTTGGGGTATCAGGTG+CGG | - | chr3.3:90632842-90632861 | None:intergenic | 50.0% |
| ! | TTGAAGGCACGTCTGGAGAA+AGG | + | chr3.3:90634509-90634528 | MS.gene063180:CDS | 50.0% |
| !! | ATTGGTGCTGTGCAGTGCTT+TGG | - | chr3.3:90632914-90632933 | None:intergenic | 50.0% |
| !! | TGCTACTTTGAAGGCACGTC+TGG | + | chr3.3:90634502-90634521 | MS.gene063180:CDS | 50.0% |
| AGCTGCAACTGCTGCAACAG+CGG | - | chr3.3:90633728-90633747 | None:intergenic | 55.0% | |
| CACGCCGCAGTATCTGTAGT+TGG | + | chr3.3:90633694-90633713 | MS.gene063180:CDS | 55.0% | |
| CCGCACTTCTCCTCAACAGT+TGG | - | chr3.3:90634554-90634573 | None:intergenic | 55.0% | |
| TAAGAGGGAGGACTACGGGT+AGG | + | chr3.3:90633611-90633630 | MS.gene063180:CDS | 55.0% | |
| TCTGATACCTGTGGCTGCTC+CGG | - | chr3.3:90633953-90633972 | None:intergenic | 55.0% | |
| TGGGATATCGCTGCACACTC+CGG | - | chr3.3:90635111-90635130 | None:intergenic | 55.0% | |
| TGTGCAGCGATATCCCAGCT+TGG | + | chr3.3:90635114-90635133 | MS.gene063180:CDS | 55.0% | |
| !! | GCGAGGAGCTGCTACTTTGA+AGG | + | chr3.3:90634493-90634512 | MS.gene063180:CDS | 55.0% |
| AGCGATATCCCAGCTTGGCC+CGG | + | chr3.3:90635119-90635138 | MS.gene063180:CDS | 60.0% | |
| AGCTTGGCCCGGAAGGGAAA+AGG | + | chr3.3:90635130-90635149 | MS.gene063180:CDS | 60.0% | |
| ATATCCCAGCTTGGCCCGGA+AGG | + | chr3.3:90635123-90635142 | MS.gene063180:CDS | 60.0% | |
| GCACGTCTGGAGAAAGGGCT+TGG | + | chr3.3:90634515-90634534 | MS.gene063180:CDS | 60.0% | |
| GCCGGTGGAGGTCGTAGAAT+TGG | - | chr3.3:90632932-90632951 | None:intergenic | 60.0% | |
| TATCCCAGCTTGGCCCGGAA+GGG | + | chr3.3:90635124-90635143 | MS.gene063180:CDS | 60.0% | |
| TTTCCCTTCCGGGCCAAGCT+GGG | - | chr3.3:90635130-90635149 | None:intergenic | 60.0% | |
| ! | TTTTCCCTTCCGGGCCAAGC+TGG | - | chr3.3:90635131-90635150 | None:intergenic | 60.0% |
| CTAACAGCCGGAGCAGCCAC+AGG | + | chr3.3:90633943-90633962 | MS.gene063180:CDS | 65.0% | |
| GAGGGAGGACTACGGGTAGG+TGG | + | chr3.3:90633614-90633633 | MS.gene063180:CDS | 65.0% | |
| GGTGCGGCGCAAGATGATGC+AGG | - | chr3.3:90632826-90632845 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 90632748 | 90635298 | 90632748 | ID=MS.gene063180 |
| chr3.3 | mRNA | 90632748 | 90635298 | 90632748 | ID=MS.gene063180.t1;Parent=MS.gene063180 |
| chr3.3 | exon | 90632748 | 90633023 | 90632748 | ID=MS.gene063180.t1.exon1;Parent=MS.gene063180.t1 |
| chr3.3 | CDS | 90632748 | 90633023 | 90632748 | ID=cds.MS.gene063180.t1;Parent=MS.gene063180.t1 |
| chr3.3 | exon | 90633231 | 90633284 | 90633231 | ID=MS.gene063180.t1.exon2;Parent=MS.gene063180.t1 |
| chr3.3 | CDS | 90633231 | 90633284 | 90633231 | ID=cds.MS.gene063180.t1;Parent=MS.gene063180.t1 |
| chr3.3 | exon | 90633422 | 90633490 | 90633422 | ID=MS.gene063180.t1.exon3;Parent=MS.gene063180.t1 |
| chr3.3 | CDS | 90633422 | 90633490 | 90633422 | ID=cds.MS.gene063180.t1;Parent=MS.gene063180.t1 |
| chr3.3 | exon | 90633595 | 90633964 | 90633595 | ID=MS.gene063180.t1.exon4;Parent=MS.gene063180.t1 |
| chr3.3 | CDS | 90633595 | 90633964 | 90633595 | ID=cds.MS.gene063180.t1;Parent=MS.gene063180.t1 |
| chr3.3 | exon | 90634489 | 90634653 | 90634489 | ID=MS.gene063180.t1.exon5;Parent=MS.gene063180.t1 |
| chr3.3 | CDS | 90634489 | 90634653 | 90634489 | ID=cds.MS.gene063180.t1;Parent=MS.gene063180.t1 |
| chr3.3 | exon | 90634792 | 90634841 | 90634792 | ID=MS.gene063180.t1.exon6;Parent=MS.gene063180.t1 |
| chr3.3 | CDS | 90634792 | 90634841 | 90634792 | ID=cds.MS.gene063180.t1;Parent=MS.gene063180.t1 |
| chr3.3 | exon | 90634957 | 90635014 | 90634957 | ID=MS.gene063180.t1.exon7;Parent=MS.gene063180.t1 |
| chr3.3 | CDS | 90634957 | 90635014 | 90634957 | ID=cds.MS.gene063180.t1;Parent=MS.gene063180.t1 |
| chr3.3 | exon | 90635099 | 90635298 | 90635099 | ID=MS.gene063180.t1.exon8;Parent=MS.gene063180.t1 |
| chr3.3 | CDS | 90635099 | 90635298 | 90635099 | ID=cds.MS.gene063180.t1;Parent=MS.gene063180.t1 |
| Gene Sequence |
| Protein sequence |
