Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06321.t1 | XP_003602698.2 | 95.4 | 895 | 40 | 1 | 1 | 895 | 1 | 894 | 0.00E+00 | 1690.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06321.t1 | O36033 | 22.0 | 740 | 471 | 13 | 200 | 894 | 136 | 814 | 6.0e-41 | 171.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06321.t1 | G7J2N4 | 95.4 | 895 | 40 | 1 | 1 | 895 | 1 | 894 | 0.0e+00 | 1690.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049207 | MS.gene06321 | 0.873638 | 1.26E-67 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06321.t1 | MTR_3g098060 | 96.648 | 895 | 29 | 1 | 1 | 895 | 1 | 894 | 0.0 | 1795 |
| MS.gene06321.t1 | MTR_3g098060 | 97.011 | 736 | 21 | 1 | 160 | 895 | 1 | 735 | 0.0 | 1490 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06321.t1 | AT5G17270 | 56.484 | 910 | 346 | 11 | 6 | 895 | 3 | 882 | 0.0 | 998 |
| MS.gene06321.t1 | AT5G37130 | 52.713 | 903 | 366 | 11 | 8 | 895 | 5 | 861 | 0.0 | 924 |
| MS.gene06321.t1 | AT5G17270 | 60.386 | 674 | 236 | 7 | 223 | 895 | 1 | 644 | 0.0 | 820 |
Find 217 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAACAAGTTCAAAGTTAT+TGG | 0.146384 | 3.1:-77779895 | MS.gene06321:CDS |
| GGGCTTCAGCTTTCAGTTAC+TGG | 0.155224 | 3.1:-77778515 | MS.gene06321:CDS |
| CAGTTCTGCATTGTTGATTC+TGG | 0.167967 | 3.1:-77770946 | MS.gene06321:CDS |
| TTCATAGCATGCATCATTAT+TGG | 0.170074 | 3.1:+77773949 | None:intergenic |
| CAGATGGTTGGTTTGCATTT+GGG | 0.192343 | 3.1:-77773158 | MS.gene06321:CDS |
| CGTTTCCTTGCTTCATTTAG+AGG | 0.204091 | 3.1:-77779837 | MS.gene06321:CDS |
| CCAGATGGTTGGTTTGCATT+TGG | 0.208047 | 3.1:-77773159 | MS.gene06321:CDS |
| GCATATAAACCCCAGATTTC+AGG | 0.220429 | 3.1:+77770596 | None:intergenic |
| TATGAGGATGAAAGATTTAT+TGG | 0.234641 | 3.1:-77780059 | MS.gene06321:CDS |
| AGTTTGAAGATTTAGAATTA+TGG | 0.242230 | 3.1:-77775643 | MS.gene06321:CDS |
| TCATTTAGAGGCTGGAATTA+TGG | 0.261858 | 3.1:-77779825 | MS.gene06321:CDS |
| TGCTAAATGGCACAGAATTA+AGG | 0.263590 | 3.1:-77770576 | MS.gene06321:CDS |
| TTGGATGCCAGTTCCCATTA+AGG | 0.268543 | 3.1:+77778321 | None:intergenic |
| GAACATCAAGAGCAAGTATC+TGG | 0.278279 | 3.1:-77770919 | MS.gene06321:CDS |
| TGGGGACAACCACCCCTTAA+TGG | 0.281452 | 3.1:-77778335 | MS.gene06321:CDS |
| GGCGAAGCCTTACAACAATT+TGG | 0.284961 | 3.1:-77779923 | MS.gene06321:CDS |
| CTTGGTTTCAGGTTGGGATA+TGG | 0.291003 | 3.1:-77776712 | MS.gene06321:intron |
| GCTTCTTGAGCAGAGAGTTT+TGG | 0.297520 | 3.1:-77779990 | MS.gene06321:CDS |
| GTGGATATGGACCTGAAATC+TGG | 0.301364 | 3.1:-77770607 | MS.gene06321:CDS |
| CAGAGAGTACGGGGAACTTT+TGG | 0.301899 | 3.1:-77775699 | MS.gene06321:CDS |
| GCGATATCTTGCGTATTAGA+TGG | 0.305842 | 3.1:-77776472 | MS.gene06321:CDS |
| GGAATTCTTTCTTCAATTGC+TGG | 0.311084 | 3.1:+77775859 | None:intergenic |
| AGAACAAGTTCAAAGTTATT+GGG | 0.313258 | 3.1:-77779894 | MS.gene06321:CDS |
| AAGCATCTTTAGAACTTTGC+AGG | 0.313431 | 3.1:-77770025 | MS.gene06321:CDS |
| CTTTCAGTTACTGGGGTACT+TGG | 0.317872 | 3.1:-77778506 | MS.gene06321:CDS |
| CTCATGTTCACAGCGCTCTC+TGG | 0.318685 | 3.1:-77773407 | MS.gene06321:intron |
| GGCTTCAGCTTTCAGTTACT+GGG | 0.324563 | 3.1:-77778514 | MS.gene06321:CDS |
| TCTGGGGTTTATATGCTAAA+TGG | 0.325384 | 3.1:-77770589 | MS.gene06321:CDS |
| GACGAAACAGCTGGCAACTC+TGG | 0.331696 | 3.1:-77771798 | MS.gene06321:CDS |
| GTTTGAAGATTTAGAATTAT+GGG | 0.342825 | 3.1:-77775642 | MS.gene06321:CDS |
| CTTCAGTTGTGGTGTTTACA+TGG | 0.345126 | 3.1:-77775836 | MS.gene06321:CDS |
| GGCTTCTTTAAATGCAATAA+AGG | 0.345159 | 3.1:+77771997 | None:intergenic |
| TTGGTGCGTTGTGGCTTGAT+AGG | 0.351636 | 3.1:-77775680 | MS.gene06321:CDS |
| ATGCAGAACTGATCTGTATT+AGG | 0.353405 | 3.1:+77770958 | None:intergenic |
| AGAAGAATTCAAGGATATTC+AGG | 0.355270 | 3.1:-77769805 | MS.gene06321:CDS |
| ACAAGTACCATTTGTGCCTT+TGG | 0.357171 | 3.1:+77778382 | None:intergenic |
| TGGAAAGTTCTCGAATCTTC+AGG | 0.358584 | 3.1:-77780264 | MS.gene06321:intron |
| GAGTCAGCTGAGATGGCAGC+TGG | 0.364585 | 3.1:-77778536 | MS.gene06321:CDS |
| CAACAGCTGTTGAGCTCATC+AGG | 0.366111 | 3.1:-77775492 | MS.gene06321:CDS |
| GGTAATGTCAGATTCTTCTA+AGG | 0.369724 | 3.1:+77781367 | None:intergenic |
| GAGCTCGTAGCGACGGATTC+CGG | 0.372523 | 3.1:+77781346 | None:intergenic |
| AGGTCACAAGACATGGAAAA+TGG | 0.375037 | 3.1:-77778187 | MS.gene06321:CDS |
| AAGCTGGAAGATGAGTTTAC+TGG | 0.383074 | 3.1:+77781193 | None:intergenic |
| AATGTGCAGAATGGGACATT+TGG | 0.388764 | 3.1:-77780325 | MS.gene06321:CDS |
| GGGGACAACCACCCCTTAAT+GGG | 0.389596 | 3.1:-77778334 | MS.gene06321:CDS |
| TTTCTAAGATGTTGCTTATG+AGG | 0.395579 | 3.1:-77780075 | MS.gene06321:CDS |
| CTTGATAGGGGAGGCAATAA+AGG | 0.395625 | 3.1:-77775666 | MS.gene06321:CDS |
| CTCTGACACAGAAGAATTCA+AGG | 0.395784 | 3.1:-77769814 | MS.gene06321:CDS |
| TACCATAACCTAGGGTCATT+TGG | 0.397459 | 3.1:+77775451 | None:intergenic |
| CCCTTCCAAGCCACCAAGTA+AGG | 0.397979 | 3.1:+77780017 | None:intergenic |
| GGGATCGAACTTGCTTCAAA+AGG | 0.399335 | 3.1:+77770528 | None:intergenic |
| TGGATGCCAGTTCCCATTAA+GGG | 0.402396 | 3.1:+77778322 | None:intergenic |
| CTCTGAAACATCTGACATAC+TGG | 0.403196 | 3.1:-77778251 | MS.gene06321:CDS |
| AATACTAAACTTGAACTTCA+AGG | 0.404380 | 3.1:+77771976 | None:intergenic |
| TCTTTCAGGGTTCTGATACA+TGG | 0.404459 | 3.1:-77770079 | MS.gene06321:intron |
| ACCGAGATTCCCTTTGTCTC+TGG | 0.411195 | 3.1:-77780357 | MS.gene06321:CDS |
| TTGCTGCCACCGAATTCTTC+CGG | 0.411865 | 3.1:-77781161 | MS.gene06321:CDS |
| GGAAGATGAGTTTACTGGAT+TGG | 0.416067 | 3.1:+77781198 | None:intergenic |
| GATGAGGTCATCGGAGGATT+CGG | 0.421714 | 3.1:+77781274 | None:intergenic |
| CAATGAAGTAAGAGAAATGC+TGG | 0.422566 | 3.1:+77776664 | None:intergenic |
| TTTACTCAATGTAATTTCAC+TGG | 0.423982 | 3.1:-77781011 | MS.gene06321:CDS |
| GCTAAATGGCACAGAATTAA+GGG | 0.424112 | 3.1:-77770575 | MS.gene06321:CDS |
| GAAGATGAGTTTACTGGATT+GGG | 0.424162 | 3.1:+77781199 | None:intergenic |
| ATATTATTCTAGGTGCTCCT+TGG | 0.424175 | 3.1:-77773981 | MS.gene06321:intron |
| TTAGAAGAATCTGACATTAC+CGG | 0.424805 | 3.1:-77781365 | MS.gene06321:CDS |
| TTGTAATTGCAGGCCTTTGA+AGG | 0.426206 | 3.1:-77780390 | MS.gene06321:intron |
| TTCCAAGCTTCCCCATTGTC+GGG | 0.427778 | 3.1:+77772580 | None:intergenic |
| TTCAGCTCGATCCCGACAAT+GGG | 0.429116 | 3.1:-77772591 | MS.gene06321:CDS |
| AACCGTTCGCCGGAAGAATT+CGG | 0.429241 | 3.1:+77781152 | None:intergenic |
| GCCTTACTTGGTGGCTTGGA+AGG | 0.434417 | 3.1:-77780018 | MS.gene06321:CDS |
| TATTATTCTAGGTGCTCCTT+GGG | 0.437049 | 3.1:-77773980 | MS.gene06321:intron |
| ATTCCAAGCTTCCCCATTGT+CGG | 0.437892 | 3.1:+77772579 | None:intergenic |
| TGTTGTGTTGCTGTCATGTT+GGG | 0.438494 | 3.1:+77778151 | None:intergenic |
| TGAAGTGCCAAATTGTTGTA+AGG | 0.441577 | 3.1:+77779916 | None:intergenic |
| AGAAGCCTTACTTGGTGGCT+TGG | 0.445385 | 3.1:-77780022 | MS.gene06321:CDS |
| TCCTCTATTGTATGCACTGC+GGG | 0.445541 | 3.1:+77773384 | None:intergenic |
| GACCAAATGACCCTAGGTTA+TGG | 0.446312 | 3.1:-77775453 | MS.gene06321:intron |
| CATGGCTGTCATCACATGTT+TGG | 0.447646 | 3.1:+77778302 | None:intergenic |
| GGGAACTCTTCTCGATTAGA+AGG | 0.448051 | 3.1:+77778107 | None:intergenic |
| TTGGGCGCGTAATTATCTAA+TGG | 0.448063 | 3.1:-77780306 | MS.gene06321:CDS |
| GGCTGAACCAAAGGCACAAA+TGG | 0.448917 | 3.1:-77778389 | MS.gene06321:CDS |
| GTTCAAAGTTATTGGGATGT+TGG | 0.448918 | 3.1:-77779887 | MS.gene06321:CDS |
| TCTTTCAATTTCAGAGAGTA+CGG | 0.449502 | 3.1:-77775710 | MS.gene06321:intron |
| TGGTGCGTTGTGGCTTGATA+GGG | 0.449734 | 3.1:-77775679 | MS.gene06321:CDS |
| TCCTTGCTTCATTTAGAGGC+TGG | 0.450831 | 3.1:-77779833 | MS.gene06321:CDS |
| ATTTGGGGCTGCTGCATTGA+AGG | 0.451184 | 3.1:-77773142 | MS.gene06321:intron |
| TGGCTAGTATTCCCGCTTTG+AGG | 0.451624 | 3.1:-77775816 | MS.gene06321:CDS |
| ACGTTGCAATTCATCGTGTC+GGG | 0.451972 | 3.1:+77778087 | None:intergenic |
| TGGGATGTTGGTTTGCATGA+TGG | 0.452544 | 3.1:-77779875 | MS.gene06321:CDS |
| AACCACCCCTTAATGGGAAC+TGG | 0.458196 | 3.1:-77778328 | MS.gene06321:CDS |
| ATCCCGACAATGGGGAAGCT+TGG | 0.469879 | 3.1:-77772582 | MS.gene06321:CDS |
| GGAGCGTGCGTTACTGATGA+TGG | 0.470166 | 3.1:-77776426 | MS.gene06321:CDS |
| CCAAATGCAAACCAACCATC+TGG | 0.472326 | 3.1:+77773159 | None:intergenic |
| TGACATGGAAATCAGTCTCT+TGG | 0.475397 | 3.1:-77775524 | MS.gene06321:intron |
| GAACAATTAATGTTGTCGCT+TGG | 0.476777 | 3.1:-77770880 | MS.gene06321:CDS |
| GAATTAGAAGCCTTACTTGG+TGG | 0.477244 | 3.1:-77780027 | MS.gene06321:CDS |
| CTTTCAATTTCAGAGAGTAC+GGG | 0.479591 | 3.1:-77775709 | MS.gene06321:intron |
| AGAACTTTGCAGGGTGTACA+TGG | 0.480735 | 3.1:-77770015 | MS.gene06321:CDS |
| ATGTGCAGAATGGGACATTT+GGG | 0.483038 | 3.1:-77780324 | MS.gene06321:CDS |
| AGATGGTTGGTTTGCATTTG+GGG | 0.484144 | 3.1:-77773157 | MS.gene06321:CDS |
| GGAATTATGGAATATGCATA+TGG | 0.485459 | 3.1:-77779812 | MS.gene06321:CDS |
| CAACATGACAGCAACACAAC+AGG | 0.486247 | 3.1:-77778149 | MS.gene06321:CDS |
| TTAGAATTAGAAGCCTTACT+TGG | 0.486988 | 3.1:-77780030 | MS.gene06321:CDS |
| GCTGATGGTTCTGACTTACT+TGG | 0.488565 | 3.1:-77780284 | MS.gene06321:CDS |
| GAATCAATTGCCTCAATGTA+AGG | 0.492103 | 3.1:+77776687 | None:intergenic |
| TGGATATGGACCTGAAATCT+GGG | 0.493187 | 3.1:-77770606 | MS.gene06321:CDS |
| CACATCAAGTGGCAGTATCA+AGG | 0.493896 | 3.1:-77769985 | MS.gene06321:CDS |
| TGGTTTCCGTACCGTACATC+AGG | 0.494727 | 3.1:-77778486 | MS.gene06321:intron |
| TGAATTTGAATGTGCAGAAT+GGG | 0.497060 | 3.1:-77780333 | MS.gene06321:CDS |
| TACGTTGCAATTCATCGTGT+CGG | 0.498329 | 3.1:+77778086 | None:intergenic |
| CGATATCTTGCGTATTAGAT+GGG | 0.499932 | 3.1:-77776471 | MS.gene06321:CDS |
| GGATCGAACTTGCTTCAAAA+GGG | 0.500443 | 3.1:+77770529 | None:intergenic |
| TACTGTGTTTACCTGATGTA+CGG | 0.500562 | 3.1:+77778475 | None:intergenic |
| ACGGTTCTACTCCGAGTTGG+TGG | 0.503869 | 3.1:-77781135 | MS.gene06321:CDS |
| AGTTTATACTTCCTCAAAGC+GGG | 0.504195 | 3.1:+77775805 | None:intergenic |
| GAAGCAAGTTCGATCCCTCC+AGG | 0.506162 | 3.1:-77770522 | MS.gene06321:intron |
| CCTTACTTGGTGGCTTGGAA+GGG | 0.506508 | 3.1:-77780017 | MS.gene06321:CDS |
| ACAGGCACGGGATGTTGAAA+AGG | 0.508458 | 3.1:-77772638 | MS.gene06321:intron |
| TTGAATTTGAATGTGCAGAA+TGG | 0.510121 | 3.1:-77780334 | MS.gene06321:CDS |
| CTGTTGTGTTGCTGTCATGT+TGG | 0.511164 | 3.1:+77778150 | None:intergenic |
| TGAGGGTGCAACGGAGGAGA+CGG | 0.516357 | 3.1:+77781324 | None:intergenic |
| CTTGATACTGCCACTTGATG+TGG | 0.517898 | 3.1:+77769986 | None:intergenic |
| GAGGATGAAAGATTTATTGG+TGG | 0.520632 | 3.1:-77780056 | MS.gene06321:CDS |
| CACCGAATTCTTCCGGCGAA+CGG | 0.521195 | 3.1:-77781154 | MS.gene06321:CDS |
| GGCTTATTATCAGTTGTCAC+GGG | 0.521352 | 3.1:+77770979 | None:intergenic |
| ACGAAACAGCTGGCAACTCT+GGG | 0.522632 | 3.1:-77771797 | MS.gene06321:CDS |
| GGTAGCTCCTTCCCCTTCAA+AGG | 0.523827 | 3.1:+77780377 | None:intergenic |
| ATTGGAAAGAATCACAAATG+AGG | 0.524767 | 3.1:-77771037 | MS.gene06321:CDS |
| CGACGTTGGCAATATCAGTC+AGG | 0.527670 | 3.1:-77771752 | MS.gene06321:intron |
| GGCACTGGAAGCTGCTCAGA+TGG | 0.529041 | 3.1:-77771100 | MS.gene06321:CDS |
| GGATGCCAGTTCCCATTAAG+GGG | 0.532070 | 3.1:+77778323 | None:intergenic |
| ATGGACGAGTTGATCCTTGT+AGG | 0.532730 | 3.1:-77779793 | MS.gene06321:intron |
| CGTAATTATCTAATGGCTGA+TGG | 0.532739 | 3.1:-77780299 | MS.gene06321:CDS |
| AGGCTTATTATCAGTTGTCA+CGG | 0.533006 | 3.1:+77770978 | None:intergenic |
| CTTGAAGAACATTTGCAGAC+AGG | 0.533759 | 3.1:-77769940 | MS.gene06321:intron |
| ACAATCTTATACACTGCTAC+AGG | 0.533787 | 3.1:-77775619 | MS.gene06321:intron |
| TAAAACTAGGTCACAAGACA+TGG | 0.535077 | 3.1:-77778194 | MS.gene06321:CDS |
| TTTGCATGATGGAGAGAGCT+TGG | 0.537529 | 3.1:-77779864 | MS.gene06321:CDS |
| AGCTCAAGAGCTTGTTGATG+AGG | 0.539357 | 3.1:+77781258 | None:intergenic |
| GTTCAGCTCGATCCCGACAA+TGG | 0.539525 | 3.1:-77772592 | MS.gene06321:CDS |
| CATGTAAACACCACAACTGA+AGG | 0.541759 | 3.1:+77775837 | None:intergenic |
| AGTCAGCTGAGATGGCAGCT+GGG | 0.541850 | 3.1:-77778535 | MS.gene06321:CDS |
| TCAAATTCAACCAGAGACAA+AGG | 0.543600 | 3.1:+77780347 | None:intergenic |
| GGAAGCTGCTCAGATGGTGT+TGG | 0.546041 | 3.1:-77771094 | MS.gene06321:CDS |
| CAAATTCAACCAGAGACAAA+GGG | 0.546452 | 3.1:+77780348 | None:intergenic |
| ACAGAGACGGTGAAGGAGTG+AGG | 0.547934 | 3.1:+77781306 | None:intergenic |
| ACCAGAGACAAAGGGAATCT+CGG | 0.550699 | 3.1:+77780356 | None:intergenic |
| CAGAAAGACCAAATGACCCT+AGG | 0.550919 | 3.1:-77775459 | MS.gene06321:CDS |
| CAAGTAACATACCATAACCT+AGG | 0.552661 | 3.1:+77775442 | None:intergenic |
| CAATAGATCTGCTAGAGCTA+AGG | 0.553350 | 3.1:-77773906 | MS.gene06321:intron |
| CAGTATGTCAGATGTTTCAG+AGG | 0.556453 | 3.1:+77778252 | None:intergenic |
| TGTAATTGCAGGCCTTTGAA+GGG | 0.557883 | 3.1:-77780389 | MS.gene06321:intron |
| ACTCGATGTTTCCAGATGGT+TGG | 0.558482 | 3.1:-77773170 | MS.gene06321:CDS |
| GCAGCAATTCAAGATTAAGC+TGG | 0.561054 | 3.1:+77781177 | None:intergenic |
| AGCATCTTTAGAACTTTGCA+GGG | 0.561958 | 3.1:-77770024 | MS.gene06321:CDS |
| ACACAAGTTCGTCAAACAGT+GGG | 0.563604 | 3.1:-77778354 | MS.gene06321:CDS |
| AACATCAAGAGCAAGTATCT+GGG | 0.564435 | 3.1:-77770918 | MS.gene06321:CDS |
| ATGCTGATGATTCTAAAACT+AGG | 0.564723 | 3.1:-77778207 | MS.gene06321:CDS |
| GCACAGTTGAACAGACTCGC+AGG | 0.565460 | 3.1:-77781076 | MS.gene06321:CDS |
| GCCCGCAGTGCATACAATAG+AGG | 0.566492 | 3.1:-77773385 | MS.gene06321:CDS |
| TTGCAGGCCTTTGAAGGGGA+AGG | 0.568013 | 3.1:-77780384 | MS.gene06321:intron |
| GATGAGTTTACTGGATTGGG+AGG | 0.569371 | 3.1:+77781202 | None:intergenic |
| TGCCAGTTCCCATTAAGGGG+TGG | 0.574271 | 3.1:+77778326 | None:intergenic |
| GGAGACGGAGCTCGTAGCGA+CGG | 0.575182 | 3.1:+77781339 | None:intergenic |
| GAAAGAATTCCCTTCAGTTG+TGG | 0.580344 | 3.1:-77775847 | MS.gene06321:CDS |
| TTACTCAATGTAATTTCACT+GGG | 0.589203 | 3.1:-77781010 | MS.gene06321:intron |
| CTCAGCGCGATCCACCAACT+CGG | 0.592593 | 3.1:+77781124 | None:intergenic |
| TCCAGCCTCTAAATGAAGCA+AGG | 0.594886 | 3.1:+77779832 | None:intergenic |
| CTCTTGAGCTCAATTGAGTG+TGG | 0.595086 | 3.1:-77781245 | MS.gene06321:CDS |
| CAGAGACGGTGAAGGAGTGA+GGG | 0.598470 | 3.1:+77781307 | None:intergenic |
| TGCCAACGTCGACTGCGACA+TGG | 0.600345 | 3.1:+77771764 | None:intergenic |
| CTCGGAGTAGAACCGTTCGC+CGG | 0.600520 | 3.1:+77781142 | None:intergenic |
| GTGAAGGAGTGAGGGTGCAA+CGG | 0.601666 | 3.1:+77781315 | None:intergenic |
| GGTGCGTTGTGGCTTGATAG+GGG | 0.602001 | 3.1:-77775678 | MS.gene06321:CDS |
| AGTCTGTTCAACTGTGCTAA+CGG | 0.603392 | 3.1:+77781082 | None:intergenic |
| GAGCTTGTTGATGAGGTCAT+CGG | 0.605219 | 3.1:+77781265 | None:intergenic |
| GGATATGGCTCCTTACATTG+AGG | 0.608735 | 3.1:-77776697 | MS.gene06321:CDS |
| TTTGAAGACAGAGACGGTGA+AGG | 0.612384 | 3.1:+77781299 | None:intergenic |
| AAGGAGTGAGGGTGCAACGG+AGG | 0.616925 | 3.1:+77781318 | None:intergenic |
| TGTTTACCTGATGTACGGTA+CGG | 0.617826 | 3.1:+77778480 | None:intergenic |
| TTTGACATAGGCTGAACCAA+AGG | 0.617857 | 3.1:-77778398 | MS.gene06321:intron |
| GGAAAGAATCACAAATGAGG+TGG | 0.620263 | 3.1:-77771034 | MS.gene06321:CDS |
| CGAACGGTTCTACTCCGAGT+TGG | 0.620664 | 3.1:-77781138 | MS.gene06321:CDS |
| CTTGTTGATGAGGTCATCGG+AGG | 0.624211 | 3.1:+77781268 | None:intergenic |
| ATTATTGGTAATGTCACCCA+AGG | 0.625719 | 3.1:+77773964 | None:intergenic |
| ATGGAAATATCCACATCAAG+TGG | 0.626161 | 3.1:-77769996 | MS.gene06321:CDS |
| GTCGTTGCGTAGTCGAACAA+AGG | 0.630907 | 3.1:-77776447 | MS.gene06321:CDS |
| GCTTCAGCTTTCAGTTACTG+GGG | 0.631881 | 3.1:-77778513 | MS.gene06321:CDS |
| AAGTAACATACCATAACCTA+GGG | 0.632429 | 3.1:+77775443 | None:intergenic |
| TTTGTAACAGACGAAACAGC+TGG | 0.632458 | 3.1:-77771807 | MS.gene06321:intron |
| GTAATTGCAGGCCTTTGAAG+GGG | 0.637937 | 3.1:-77780388 | MS.gene06321:intron |
| ATGTAAACACCACAACTGAA+GGG | 0.638438 | 3.1:+77775838 | None:intergenic |
| TCCATGAGAACTGACCTACA+AGG | 0.638492 | 3.1:+77779779 | None:intergenic |
| TCACAAATGAGGTGGAAAAG+CGG | 0.643464 | 3.1:-77771026 | MS.gene06321:CDS |
| TCGGAATTTGAAGACAGAGA+CGG | 0.646781 | 3.1:+77781293 | None:intergenic |
| AACACAAGTTCGTCAAACAG+TGG | 0.646857 | 3.1:-77778355 | MS.gene06321:CDS |
| ATGAACTCGATGTTTCCAGA+TGG | 0.649368 | 3.1:-77773174 | MS.gene06321:CDS |
| AATGAAGTAAGAGAAATGCT+GGG | 0.649603 | 3.1:+77776665 | None:intergenic |
| TTATTATCAGTTGTCACGGG+AGG | 0.651094 | 3.1:+77770982 | None:intergenic |
| TTTCAATTTCAGAGAGTACG+GGG | 0.651650 | 3.1:-77775708 | MS.gene06321:intron |
| TAAATGAAGCAAGGAAACGA+TGG | 0.652563 | 3.1:+77779841 | None:intergenic |
| AGCCATGTCGCAGTCGACGT+TGG | 0.652653 | 3.1:-77771766 | MS.gene06321:CDS |
| GGGCTTCAGAACACATCATG+AGG | 0.653743 | 3.1:+77770549 | None:intergenic |
| CTCCTCTATTGTATGCACTG+CGG | 0.656732 | 3.1:+77773383 | None:intergenic |
| CACAGTTGAACAGACTCGCA+GGG | 0.662195 | 3.1:-77781075 | MS.gene06321:CDS |
| GATGCAAATTATTTCCACCA+TGG | 0.670996 | 3.1:+77778284 | None:intergenic |
| AAGTTTATACTTCCTCAAAG+CGG | 0.675338 | 3.1:+77775804 | None:intergenic |
| CTGTTCAACTGTGCTAACGG+TGG | 0.675453 | 3.1:+77781085 | None:intergenic |
| CCTTAAGGGACATACCTGGA+GGG | 0.679981 | 3.1:+77770508 | None:intergenic |
| GCGTTGTGGCTTGATAGGGG+AGG | 0.687638 | 3.1:-77775675 | MS.gene06321:CDS |
| GGATATGGACCTGAAATCTG+GGG | 0.697079 | 3.1:-77770605 | MS.gene06321:CDS |
| ACATGTGATGACAGCCATGG+TGG | 0.702452 | 3.1:-77778298 | MS.gene06321:CDS |
| CGTTCGCCGGAAGAATTCGG+TGG | 0.705957 | 3.1:+77781155 | None:intergenic |
| CACAAGTTCGTCAAACAGTG+GGG | 0.711939 | 3.1:-77778353 | MS.gene06321:CDS |
| TCAGCTCGATCCCGACAATG+GGG | 0.723688 | 3.1:-77772590 | MS.gene06321:CDS |
| GTTCTTCAAGTGCATCTCAG+CGG | 0.733559 | 3.1:+77769953 | None:intergenic |
| CAAACATGTGATGACAGCCA+TGG | 0.752317 | 3.1:-77778301 | MS.gene06321:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 77769791 | 77781396 | 77769791 | ID=MS.gene06321 |
| chr3.1 | mRNA | 77769791 | 77781396 | 77769791 | ID=MS.gene06321.t1;Parent=MS.gene06321 |
| chr3.1 | exon | 77781011 | 77781396 | 77781011 | ID=MS.gene06321.t1.exon1;Parent=MS.gene06321.t1 |
| chr3.1 | CDS | 77781011 | 77781396 | 77781011 | ID=cds.MS.gene06321.t1;Parent=MS.gene06321.t1 |
| chr3.1 | exon | 77780265 | 77780400 | 77780265 | ID=MS.gene06321.t1.exon2;Parent=MS.gene06321.t1 |
| chr3.1 | CDS | 77780265 | 77780400 | 77780265 | ID=cds.MS.gene06321.t1;Parent=MS.gene06321.t1 |
| chr3.1 | exon | 77779794 | 77780107 | 77779794 | ID=MS.gene06321.t1.exon3;Parent=MS.gene06321.t1 |
| chr3.1 | CDS | 77779794 | 77780107 | 77779794 | ID=cds.MS.gene06321.t1;Parent=MS.gene06321.t1 |
| chr3.1 | exon | 77778487 | 77778568 | 77778487 | ID=MS.gene06321.t1.exon4;Parent=MS.gene06321.t1 |
| chr3.1 | CDS | 77778487 | 77778568 | 77778487 | ID=cds.MS.gene06321.t1;Parent=MS.gene06321.t1 |
| chr3.1 | exon | 77778089 | 77778410 | 77778089 | ID=MS.gene06321.t1.exon5;Parent=MS.gene06321.t1 |
| chr3.1 | CDS | 77778089 | 77778410 | 77778089 | ID=cds.MS.gene06321.t1;Parent=MS.gene06321.t1 |
| chr3.1 | exon | 77776665 | 77776723 | 77776665 | ID=MS.gene06321.t1.exon6;Parent=MS.gene06321.t1 |
| chr3.1 | CDS | 77776665 | 77776723 | 77776665 | ID=cds.MS.gene06321.t1;Parent=MS.gene06321.t1 |
| chr3.1 | exon | 77776418 | 77776507 | 77776418 | ID=MS.gene06321.t1.exon7;Parent=MS.gene06321.t1 |
| chr3.1 | CDS | 77776418 | 77776507 | 77776418 | ID=cds.MS.gene06321.t1;Parent=MS.gene06321.t1 |
| chr3.1 | exon | 77775814 | 77775905 | 77775814 | ID=MS.gene06321.t1.exon8;Parent=MS.gene06321.t1 |
| chr3.1 | CDS | 77775814 | 77775905 | 77775814 | ID=cds.MS.gene06321.t1;Parent=MS.gene06321.t1 |
| chr3.1 | exon | 77775620 | 77775718 | 77775620 | ID=MS.gene06321.t1.exon9;Parent=MS.gene06321.t1 |
| chr3.1 | CDS | 77775620 | 77775718 | 77775620 | ID=cds.MS.gene06321.t1;Parent=MS.gene06321.t1 |
| chr3.1 | exon | 77775454 | 77775531 | 77775454 | ID=MS.gene06321.t1.exon10;Parent=MS.gene06321.t1 |
| chr3.1 | CDS | 77775454 | 77775531 | 77775454 | ID=cds.MS.gene06321.t1;Parent=MS.gene06321.t1 |
| chr3.1 | exon | 77773907 | 77773991 | 77773907 | ID=MS.gene06321.t1.exon11;Parent=MS.gene06321.t1 |
| chr3.1 | CDS | 77773907 | 77773991 | 77773907 | ID=cds.MS.gene06321.t1;Parent=MS.gene06321.t1 |
| chr3.1 | exon | 77773358 | 77773416 | 77773358 | ID=MS.gene06321.t1.exon12;Parent=MS.gene06321.t1 |
| chr3.1 | CDS | 77773358 | 77773416 | 77773358 | ID=cds.MS.gene06321.t1;Parent=MS.gene06321.t1 |
| chr3.1 | exon | 77773143 | 77773212 | 77773143 | ID=MS.gene06321.t1.exon13;Parent=MS.gene06321.t1 |
| chr3.1 | CDS | 77773143 | 77773212 | 77773143 | ID=cds.MS.gene06321.t1;Parent=MS.gene06321.t1 |
| chr3.1 | exon | 77772565 | 77772656 | 77772565 | ID=MS.gene06321.t1.exon14;Parent=MS.gene06321.t1 |
| chr3.1 | CDS | 77772565 | 77772656 | 77772565 | ID=cds.MS.gene06321.t1;Parent=MS.gene06321.t1 |
| chr3.1 | exon | 77771986 | 77772048 | 77771986 | ID=MS.gene06321.t1.exon15;Parent=MS.gene06321.t1 |
| chr3.1 | CDS | 77771986 | 77772048 | 77771986 | ID=cds.MS.gene06321.t1;Parent=MS.gene06321.t1 |
| chr3.1 | exon | 77771753 | 77771819 | 77771753 | ID=MS.gene06321.t1.exon16;Parent=MS.gene06321.t1 |
| chr3.1 | CDS | 77771753 | 77771819 | 77771753 | ID=cds.MS.gene06321.t1;Parent=MS.gene06321.t1 |
| chr3.1 | exon | 77770864 | 77771121 | 77770864 | ID=MS.gene06321.t1.exon17;Parent=MS.gene06321.t1 |
| chr3.1 | CDS | 77770864 | 77771121 | 77770864 | ID=cds.MS.gene06321.t1;Parent=MS.gene06321.t1 |
| chr3.1 | exon | 77770523 | 77770645 | 77770523 | ID=MS.gene06321.t1.exon18;Parent=MS.gene06321.t1 |
| chr3.1 | CDS | 77770523 | 77770645 | 77770523 | ID=cds.MS.gene06321.t1;Parent=MS.gene06321.t1 |
| chr3.1 | exon | 77769941 | 77770093 | 77769941 | ID=MS.gene06321.t1.exon19;Parent=MS.gene06321.t1 |
| chr3.1 | CDS | 77769941 | 77770093 | 77769941 | ID=cds.MS.gene06321.t1;Parent=MS.gene06321.t1 |
| chr3.1 | exon | 77769791 | 77769847 | 77769791 | ID=MS.gene06321.t1.exon20;Parent=MS.gene06321.t1 |
| chr3.1 | CDS | 77769791 | 77769847 | 77769791 | ID=cds.MS.gene06321.t1;Parent=MS.gene06321.t1 |
| Gene Sequence |
| Protein sequence |
