Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049207.t1 | XP_003602698.2 | 95.1 | 878 | 42 | 1 | 1 | 878 | 1 | 877 | 0.00E+00 | 1652.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049207.t1 | O36033 | 22.4 | 711 | 453 | 12 | 200 | 872 | 136 | 785 | 5.9e-41 | 171.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049207.t1 | G7J2N4 | 95.1 | 878 | 42 | 1 | 1 | 878 | 1 | 877 | 0.0e+00 | 1652.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049207 | MS.gene049824 | 0.863489 | 2.40E-64 | -1.69E-46 |
| MS.gene049207 | MS.gene049825 | 0.816369 | 5.73E-52 | -1.69E-46 |
| MS.gene049207 | MS.gene050885 | 0.839348 | 1.67E-57 | -1.69E-46 |
| MS.gene049207 | MS.gene052717 | 0.817018 | 4.10E-52 | -1.69E-46 |
| MS.gene049207 | MS.gene053080 | 0.800557 | 1.36E-48 | -1.69E-46 |
| MS.gene049207 | MS.gene053226 | 0.807293 | 5.42E-50 | -1.69E-46 |
| MS.gene049207 | MS.gene055808 | 0.807069 | 6.05E-50 | -1.69E-46 |
| MS.gene049207 | MS.gene056403 | 0.819811 | 9.54E-53 | -1.69E-46 |
| MS.gene049207 | MS.gene056605 | 0.818335 | 2.07E-52 | -1.69E-46 |
| MS.gene049207 | MS.gene05689 | 0.803502 | 3.38E-49 | -1.69E-46 |
| MS.gene049207 | MS.gene059935 | 0.814795 | 1.28E-51 | -1.69E-46 |
| MS.gene049207 | MS.gene06321 | 0.873638 | 1.26E-67 | -1.69E-46 |
| MS.gene049207 | MS.gene06323 | 0.8767 | 1.13E-68 | -1.69E-46 |
| MS.gene049207 | MS.gene063407 | 0.83894 | 2.13E-57 | -1.69E-46 |
| MS.gene049207 | MS.gene065559 | 0.862397 | 5.22E-64 | -1.69E-46 |
| MS.gene049207 | MS.gene065793 | 0.808041 | 3.76E-50 | -1.69E-46 |
| MS.gene049207 | MS.gene066566 | 0.803854 | 2.86E-49 | -1.69E-46 |
| MS.gene049207 | MS.gene066996 | 0.816002 | 6.92E-52 | -1.69E-46 |
| MS.gene049207 | MS.gene068135 | 0.816382 | 5.69E-52 | -1.69E-46 |
| MS.gene049207 | MS.gene069880 | 0.838743 | 2.40E-57 | -1.69E-46 |
| MS.gene049207 | MS.gene072280 | 0.8284 | 9.18E-55 | -1.69E-46 |
| MS.gene049207 | MS.gene072299 | 0.812428 | 4.26E-51 | -1.69E-46 |
| MS.gene049207 | MS.gene072478 | 0.849476 | 3.16E-60 | -1.69E-46 |
| MS.gene049207 | MS.gene07314 | 0.828054 | 1.11E-54 | -1.69E-46 |
| MS.gene049207 | MS.gene07318 | 0.815359 | 9.62E-52 | -1.69E-46 |
| MS.gene049207 | MS.gene073300 | 0.809938 | 1.48E-50 | -1.69E-46 |
| MS.gene049207 | MS.gene073637 | 0.84298 | 1.86E-58 | -1.69E-46 |
| MS.gene049207 | MS.gene07393 | 0.839276 | 1.75E-57 | -1.69E-46 |
| MS.gene049207 | MS.gene08537 | 0.805539 | 1.27E-49 | -1.69E-46 |
| MS.gene049207 | MS.gene08554 | 0.801926 | 7.15E-49 | -1.69E-46 |
| MS.gene049207 | MS.gene20679 | 0.819316 | 1.24E-52 | -1.69E-46 |
| MS.gene049207 | MS.gene21232 | 0.823831 | 1.12E-53 | -1.69E-46 |
| MS.gene049207 | MS.gene21234 | 0.807976 | 3.88E-50 | -1.69E-46 |
| MS.gene049207 | MS.gene21700 | 0.84036 | 9.12E-58 | -1.69E-46 |
| MS.gene049207 | MS.gene21886 | 0.815204 | 1.04E-51 | -1.69E-46 |
| MS.gene049207 | MS.gene21926 | 0.839993 | 1.14E-57 | -1.69E-46 |
| MS.gene049207 | MS.gene21928 | 0.806364 | 8.53E-50 | -1.69E-46 |
| MS.gene049207 | MS.gene22270 | 0.831357 | 1.75E-55 | -1.69E-46 |
| MS.gene049207 | MS.gene22974 | 0.812433 | 4.25E-51 | -1.69E-46 |
| MS.gene049207 | MS.gene24189 | 0.807643 | 4.57E-50 | -1.69E-46 |
| MS.gene049207 | MS.gene24897 | 0.801879 | 7.31E-49 | -1.69E-46 |
| MS.gene049207 | MS.gene25207 | 0.831765 | 1.39E-55 | -1.69E-46 |
| MS.gene049207 | MS.gene27921 | 0.866286 | 3.19E-65 | -1.69E-46 |
| MS.gene049207 | MS.gene28319 | 0.828612 | 8.16E-55 | -1.69E-46 |
| MS.gene049207 | MS.gene28652 | 0.824627 | 7.29E-54 | -1.69E-46 |
| MS.gene049207 | MS.gene28852 | 0.806807 | 6.87E-50 | -1.69E-46 |
| MS.gene049207 | MS.gene29345 | 0.811307 | 7.48E-51 | -1.69E-46 |
| MS.gene049207 | MS.gene31468 | 0.814039 | 1.89E-51 | -1.69E-46 |
| MS.gene049207 | MS.gene32091 | 0.834501 | 2.89E-56 | -1.69E-46 |
| MS.gene049207 | MS.gene32419 | 0.832419 | 9.56E-56 | -1.69E-46 |
| MS.gene049207 | MS.gene32556 | 0.807152 | 5.81E-50 | -1.69E-46 |
| MS.gene049207 | MS.gene38754 | 0.838378 | 2.98E-57 | -1.69E-46 |
| MS.gene049207 | MS.gene39195 | 0.841928 | 3.53E-58 | -1.69E-46 |
| MS.gene049207 | MS.gene40467 | 0.821057 | 4.94E-53 | -1.69E-46 |
| MS.gene049207 | MS.gene41606 | 0.866746 | 2.28E-65 | -1.69E-46 |
| MS.gene049207 | MS.gene41607 | 0.878644 | 2.38E-69 | -1.69E-46 |
| MS.gene049207 | MS.gene42882 | 0.808583 | 2.88E-50 | -1.69E-46 |
| MS.gene049207 | MS.gene44753 | 0.844721 | 6.34E-59 | -1.69E-46 |
| MS.gene049207 | MS.gene46475 | 0.869555 | 2.84E-66 | -1.69E-46 |
| MS.gene049207 | MS.gene47176 | 0.805627 | 1.22E-49 | -1.69E-46 |
| MS.gene049207 | MS.gene47878 | 0.870425 | 1.47E-66 | -1.69E-46 |
| MS.gene049207 | MS.gene48323 | 0.820118 | 8.12E-53 | -1.69E-46 |
| MS.gene049207 | MS.gene48368 | 0.810166 | 1.32E-50 | -1.69E-46 |
| MS.gene049207 | MS.gene49310 | 0.820273 | 7.49E-53 | -1.69E-46 |
| MS.gene049207 | MS.gene50615 | 0.831504 | 1.61E-55 | -1.69E-46 |
| MS.gene049207 | MS.gene50986 | 0.854554 | 1.14E-61 | -1.69E-46 |
| MS.gene049207 | MS.gene52941 | 0.843484 | 1.36E-58 | -1.69E-46 |
| MS.gene049207 | MS.gene53345 | 0.820824 | 5.59E-53 | -1.69E-46 |
| MS.gene049207 | MS.gene56067 | 0.821236 | 4.49E-53 | -1.69E-46 |
| MS.gene049207 | MS.gene56414 | 0.800314 | 1.53E-48 | -1.69E-46 |
| MS.gene049207 | MS.gene56468 | 0.826269 | 2.98E-54 | -1.69E-46 |
| MS.gene049207 | MS.gene56868 | 0.849721 | 2.70E-60 | -1.69E-46 |
| MS.gene049207 | MS.gene58161 | 0.821897 | 3.16E-53 | -1.69E-46 |
| MS.gene049207 | MS.gene59369 | 0.824098 | 9.70E-54 | -1.69E-46 |
| MS.gene049207 | MS.gene61979 | 0.825228 | 5.26E-54 | -1.69E-46 |
| MS.gene049207 | MS.gene61980 | 0.842518 | 2.46E-58 | -1.69E-46 |
| MS.gene049207 | MS.gene61999 | 0.870827 | 1.09E-66 | -1.69E-46 |
| MS.gene049207 | MS.gene62096 | 0.833261 | 5.90E-56 | -1.69E-46 |
| MS.gene049207 | MS.gene63988 | 0.804832 | 1.79E-49 | -1.69E-46 |
| MS.gene049207 | MS.gene64191 | 0.804032 | 2.62E-49 | -1.69E-46 |
| MS.gene049207 | MS.gene65249 | 0.848818 | 4.81E-60 | -1.69E-46 |
| MS.gene049207 | MS.gene71825 | 0.812519 | 4.07E-51 | -1.69E-46 |
| MS.gene049207 | MS.gene71826 | 0.806003 | 1.02E-49 | -1.69E-46 |
| MS.gene049207 | MS.gene74503 | 0.800795 | 1.22E-48 | -1.69E-46 |
| MS.gene049207 | MS.gene75146 | 0.800792 | 1.22E-48 | -1.69E-46 |
| MS.gene049207 | MS.gene75187 | 0.80884 | 2.54E-50 | -1.69E-46 |
| MS.gene049207 | MS.gene76002 | 0.846825 | 1.70E-59 | -1.69E-46 |
| MS.gene049207 | MS.gene78006 | 0.801113 | 1.05E-48 | -1.69E-46 |
| MS.gene049207 | MS.gene78591 | 0.847426 | 1.17E-59 | -1.69E-46 |
| MS.gene049207 | MS.gene79253 | 0.832959 | 7.02E-56 | -1.69E-46 |
| MS.gene049207 | MS.gene79409 | 0.837601 | 4.72E-57 | -1.69E-46 |
| MS.gene049207 | MS.gene81498 | 0.821417 | 4.08E-53 | -1.69E-46 |
| MS.gene049207 | MS.gene82387 | 0.822318 | 2.53E-53 | -1.69E-46 |
| MS.gene049207 | MS.gene82805 | 0.810126 | 1.35E-50 | -1.69E-46 |
| MS.gene049207 | MS.gene83091 | 0.823923 | 1.07E-53 | -1.69E-46 |
| MS.gene049207 | MS.gene83830 | 0.817266 | 3.61E-52 | -1.69E-46 |
| MS.gene049207 | MS.gene84040 | 0.826658 | 2.40E-54 | -1.69E-46 |
| MS.gene049207 | MS.gene85160 | 0.840589 | 7.94E-58 | -1.69E-46 |
| MS.gene049207 | MS.gene85566 | 0.803253 | 3.81E-49 | -1.69E-46 |
| MS.gene049207 | MS.gene90863 | 0.851737 | 7.30E-61 | -1.69E-46 |
| MS.gene049207 | MS.gene93501 | 0.837816 | 4.16E-57 | -1.69E-46 |
| MS.gene049207 | MS.gene95472 | 0.842201 | 2.99E-58 | -1.69E-46 |
| MS.gene049207 | MS.gene98953 | 0.832138 | 1.12E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049207.t1 | MTR_3g098060 | 96.355 | 878 | 31 | 1 | 1 | 878 | 1 | 877 | 0.0 | 1757 |
| MS.gene049207.t1 | MTR_3g098060 | 96.662 | 719 | 23 | 1 | 160 | 878 | 1 | 718 | 0.0 | 1450 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049207.t1 | AT5G17270 | 56.805 | 889 | 335 | 10 | 12 | 881 | 9 | 867 | 0.0 | 979 |
| MS.gene049207.t1 | AT5G37130 | 52.941 | 884 | 356 | 10 | 12 | 881 | 9 | 846 | 0.0 | 905 |
| MS.gene049207.t1 | AT5G17270 | 60.546 | 659 | 230 | 6 | 223 | 881 | 1 | 629 | 0.0 | 805 |
Find 217 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAACAAGTTCAAAGTTAT+TGG | 0.146384 | 3.3:-80702591 | MS.gene049207:CDS |
| GGGCTTCAGCTTTCAGTTAC+TGG | 0.155224 | 3.3:-80701202 | MS.gene049207:CDS |
| TTCATAGCATGCATCATTAT+TGG | 0.170074 | 3.3:+80696653 | None:intergenic |
| CAGTTCTGCATTGTTGATTC+TGG | 0.176302 | 3.3:-80693642 | MS.gene049207:CDS |
| CAGATGGTTGGTTTGCATTT+GGG | 0.192343 | 3.3:-80695862 | MS.gene049207:CDS |
| CGTTTCCTTGCTTCATTTAG+AGG | 0.204091 | 3.3:-80702533 | MS.gene049207:CDS |
| CCAGATGGTTGGTTTGCATT+TGG | 0.208047 | 3.3:-80695863 | MS.gene049207:CDS |
| GCATATAAACCCCAGATTTC+AGG | 0.220429 | 3.3:+80693293 | None:intergenic |
| TATGAGGATGAAAGATTTAT+TGG | 0.234641 | 3.3:-80702755 | MS.gene049207:CDS |
| AGTTTGAAGATTTAGAATTA+TGG | 0.242230 | 3.3:-80698333 | MS.gene049207:CDS |
| TCATTTAGAGGCTGGAATTA+TGG | 0.261858 | 3.3:-80702521 | MS.gene049207:CDS |
| TGCTAAATGGCACAGAATTA+AGG | 0.263590 | 3.3:-80693273 | MS.gene049207:CDS |
| TTGGATGCCAGTTCCCATTA+AGG | 0.268543 | 3.3:+80701010 | None:intergenic |
| AACCGTTCGCCGGAAGAATT+TGG | 0.275744 | 3.3:+80703870 | None:intergenic |
| TGGGGACAACCACCCCTTAA+TGG | 0.281452 | 3.3:-80701024 | MS.gene049207:CDS |
| GGCGAAGCCTTACAACAATT+TGG | 0.284961 | 3.3:-80702619 | MS.gene049207:CDS |
| CTTGGTTTCAGGTTGGGATA+TGG | 0.291003 | 3.3:-80699396 | MS.gene049207:intron |
| GCTTCTTGAGCAGAGAGTTT+TGG | 0.297520 | 3.3:-80702686 | MS.gene049207:CDS |
| GTGGATATGGACCTGAAATC+TGG | 0.301364 | 3.3:-80693304 | MS.gene049207:CDS |
| CAGAGAGTACGGGGAACTTT+TGG | 0.301899 | 3.3:-80698389 | MS.gene049207:CDS |
| GCGATATCTTGCGTATTAGA+TGG | 0.305842 | 3.3:-80699155 | MS.gene049207:CDS |
| GGAATTCTTTCTTCAATTGC+TGG | 0.311084 | 3.3:+80698549 | None:intergenic |
| AGAACAAGTTCAAAGTTATT+GGG | 0.313258 | 3.3:-80702590 | MS.gene049207:CDS |
| AAGCATCTTTAGAACTTTGC+AGG | 0.313431 | 3.3:-80692722 | MS.gene049207:CDS |
| CTTTCAGTTACTGGGGTACT+TGG | 0.317872 | 3.3:-80701193 | MS.gene049207:CDS |
| GGCTTCAGCTTTCAGTTACT+GGG | 0.324563 | 3.3:-80701201 | MS.gene049207:CDS |
| TCTGGGGTTTATATGCTAAA+TGG | 0.325384 | 3.3:-80693286 | MS.gene049207:CDS |
| ATGCAGAACTGGTCTGTATT+AGG | 0.330916 | 3.3:+80693654 | None:intergenic |
| GACGAAACAGCTGGCAACTC+TGG | 0.331696 | 3.3:-80694497 | MS.gene049207:CDS |
| GAACATCAAGAGCAAGTATC+TGG | 0.340274 | 3.3:-80693615 | MS.gene049207:CDS |
| GTTTGAAGATTTAGAATTAT+GGG | 0.342825 | 3.3:-80698332 | MS.gene049207:CDS |
| CTTCAGTTGTGGTGTTTACA+TGG | 0.345126 | 3.3:-80698526 | MS.gene049207:CDS |
| GGCTTCTTTAAATGCAATAA+AGG | 0.345159 | 3.3:+80694696 | None:intergenic |
| TTGGTGCGTTGTGGCTTGAT+AGG | 0.351636 | 3.3:-80698370 | MS.gene049207:CDS |
| ACAAGTACCATTTGTGCCTT+TGG | 0.357171 | 3.3:+80701071 | None:intergenic |
| TGGAAAGTTCTCGAATCTTC+AGG | 0.358584 | 3.3:-80703012 | MS.gene049207:intron |
| CTTATGTTCACAGCGCTCTC+TGG | 0.364049 | 3.3:-80696111 | MS.gene049207:intron |
| GAGTCAGCTGAGATGGCAGC+TGG | 0.364585 | 3.3:-80701223 | MS.gene049207:CDS |
| CAACAGCTGTTGAGCTCATC+AGG | 0.366111 | 3.3:-80698182 | MS.gene049207:CDS |
| GAGCTCGTAGCGACGGATTC+CGG | 0.372523 | 3.3:+80704064 | None:intergenic |
| AGGTCACAAGACATGGAAAA+TGG | 0.375037 | 3.3:-80700876 | MS.gene049207:CDS |
| AAGCTGGAAGATGAGTTTAC+TGG | 0.383074 | 3.3:+80703911 | None:intergenic |
| AATGTGCAGAATGGGACATT+TGG | 0.388764 | 3.3:-80703073 | MS.gene049207:CDS |
| GGGGACAACCACCCCTTAAT+GGG | 0.389596 | 3.3:-80701023 | MS.gene049207:CDS |
| TACCATAACCTAGGGTCATT+TGG | 0.397459 | 3.3:+80698141 | None:intergenic |
| GGTAAGGTCAGATTCTTCTA+AGG | 0.397773 | 3.3:+80704085 | None:intergenic |
| CCCTTCCAAGCCACCAAGTA+AGG | 0.397979 | 3.3:+80702713 | None:intergenic |
| GGGATCGAACTTGCTTCAAA+AGG | 0.399335 | 3.3:+80693225 | None:intergenic |
| TGGATGCCAGTTCCCATTAA+GGG | 0.402396 | 3.3:+80701011 | None:intergenic |
| CTCTGAAACATCTGACATAC+TGG | 0.403196 | 3.3:-80700940 | MS.gene049207:CDS |
| AATACTAAACTTGAACTTCA+AGG | 0.404380 | 3.3:+80694675 | None:intergenic |
| TCTTTCAGGGTTCTGATACA+TGG | 0.404459 | 3.3:-80692776 | MS.gene049207:intron |
| CTTGATAGGGGAGGCGATAA+AGG | 0.406593 | 3.3:-80698356 | MS.gene049207:CDS |
| TTAGAAGAATCTGACCTTAC+CGG | 0.407554 | 3.3:-80704083 | MS.gene049207:CDS |
| TTGCTGCCACCAAATTCTTC+CGG | 0.409307 | 3.3:-80703879 | MS.gene049207:CDS |
| ACCGAGATTCCCTTTGTCTC+TGG | 0.411195 | 3.3:-80703105 | MS.gene049207:CDS |
| GGAAGATGAGTTTACTGGAT+TGG | 0.416067 | 3.3:+80703916 | None:intergenic |
| GATGAGGTCATCGGAGGATT+CGG | 0.421714 | 3.3:+80703992 | None:intergenic |
| CAATGAAGTAAGAGAAATGC+TGG | 0.422566 | 3.3:+80699348 | None:intergenic |
| TTTACTCAATGTAATTTCAC+TGG | 0.423982 | 3.3:-80703729 | MS.gene049207:CDS |
| GCTAAATGGCACAGAATTAA+GGG | 0.424112 | 3.3:-80693272 | MS.gene049207:CDS |
| GAAGATGAGTTTACTGGATT+GGG | 0.424162 | 3.3:+80703917 | None:intergenic |
| ATATTATTCTAGGTGCTCCT+TGG | 0.424175 | 3.3:-80696685 | MS.gene049207:intron |
| TTGTAATTGCAGGCCTTTGA+AGG | 0.426206 | 3.3:-80703138 | MS.gene049207:intron |
| CAGAATCAACAATGCAGAAC+TGG | 0.426214 | 3.3:+80693643 | None:intergenic |
| TTCCAAGCTTCCCCATTGTC+GGG | 0.427778 | 3.3:+80695284 | None:intergenic |
| TTCAGCTCGATCCCGACAAT+GGG | 0.429116 | 3.3:-80695295 | MS.gene049207:CDS |
| GCCTTACTTGGTGGCTTGGA+AGG | 0.434417 | 3.3:-80702714 | MS.gene049207:CDS |
| TATTATTCTAGGTGCTCCTT+GGG | 0.437049 | 3.3:-80696684 | MS.gene049207:intron |
| ATTCCAAGCTTCCCCATTGT+CGG | 0.437892 | 3.3:+80695283 | None:intergenic |
| TGTTGTGTTGCTGTCATGTT+GGG | 0.438494 | 3.3:+80700840 | None:intergenic |
| TGAAGTGCCAAATTGTTGTA+AGG | 0.441577 | 3.3:+80702612 | None:intergenic |
| AGAAGCCTTACTTGGTGGCT+TGG | 0.445385 | 3.3:-80702718 | MS.gene049207:CDS |
| TCCTCTATTGTATGCACTGC+GGG | 0.445541 | 3.3:+80696088 | None:intergenic |
| GACCAAATGACCCTAGGTTA+TGG | 0.446312 | 3.3:-80698143 | MS.gene049207:intron |
| CATGGCTGTCATCACATGTT+TGG | 0.447646 | 3.3:+80700991 | None:intergenic |
| TGTCTAAGATGTTGCTTATG+AGG | 0.447757 | 3.3:-80702771 | MS.gene049207:CDS |
| GGGAACTCTTCTCGATTAGA+AGG | 0.448051 | 3.3:+80700796 | None:intergenic |
| TTGGGCGCGTAATTATCTAA+TGG | 0.448063 | 3.3:-80703054 | MS.gene049207:CDS |
| GGCTGAACCAAAGGCACAAA+TGG | 0.448917 | 3.3:-80701078 | MS.gene049207:CDS |
| GTTCAAAGTTATTGGGATGT+TGG | 0.448918 | 3.3:-80702583 | MS.gene049207:CDS |
| TCTTTCAATTTCAGAGAGTA+CGG | 0.449502 | 3.3:-80698400 | MS.gene049207:intron |
| TGGTGCGTTGTGGCTTGATA+GGG | 0.449734 | 3.3:-80698369 | MS.gene049207:CDS |
| TCCTTGCTTCATTTAGAGGC+TGG | 0.450831 | 3.3:-80702529 | MS.gene049207:CDS |
| ATTTGGGGCTGCTGCATTGA+AGG | 0.451184 | 3.3:-80695846 | MS.gene049207:intron |
| TGGCTAGTATTCCCGCTTTG+AGG | 0.451624 | 3.3:-80698506 | MS.gene049207:CDS |
| ACGTTGCAATTCATCGTGTC+GGG | 0.451972 | 3.3:+80700776 | None:intergenic |
| TGGGATGTTGGTTTGCATGA+TGG | 0.452544 | 3.3:-80702571 | MS.gene049207:CDS |
| AACCACCCCTTAATGGGAAC+TGG | 0.458196 | 3.3:-80701017 | MS.gene049207:CDS |
| ATCCCGACAATGGGGAAGCT+TGG | 0.469879 | 3.3:-80695286 | MS.gene049207:CDS |
| GGAGCGTGCGTTACTGATGA+TGG | 0.470166 | 3.3:-80699109 | MS.gene049207:CDS |
| CCAAATGCAAACCAACCATC+TGG | 0.472326 | 3.3:+80695863 | None:intergenic |
| TGACATGGAAATCAGTCTCT+TGG | 0.475397 | 3.3:-80698214 | MS.gene049207:intron |
| GAACAATTAATGTTGTCGCT+TGG | 0.476777 | 3.3:-80693576 | MS.gene049207:CDS |
| GAATTAGAAGCCTTACTTGG+TGG | 0.477244 | 3.3:-80702723 | MS.gene049207:CDS |
| CTTTCAATTTCAGAGAGTAC+GGG | 0.479591 | 3.3:-80698399 | MS.gene049207:intron |
| AGAACTTTGCAGGGTGTACA+TGG | 0.480735 | 3.3:-80692712 | MS.gene049207:CDS |
| ATGTGCAGAATGGGACATTT+GGG | 0.483038 | 3.3:-80703072 | MS.gene049207:CDS |
| AGATGGTTGGTTTGCATTTG+GGG | 0.484144 | 3.3:-80695861 | MS.gene049207:CDS |
| GGAATTATGGAATATGCATA+TGG | 0.485459 | 3.3:-80702508 | MS.gene049207:CDS |
| CAACATGACAGCAACACAAC+AGG | 0.486247 | 3.3:-80700838 | MS.gene049207:CDS |
| TTAGAATTAGAAGCCTTACT+TGG | 0.486988 | 3.3:-80702726 | MS.gene049207:CDS |
| GCTGATGGTTCTGACTTACT+TGG | 0.488565 | 3.3:-80703032 | MS.gene049207:CDS |
| GAATCAATTGCCTCAATGTA+AGG | 0.492103 | 3.3:+80699371 | None:intergenic |
| TGGATATGGACCTGAAATCT+GGG | 0.493187 | 3.3:-80693303 | MS.gene049207:CDS |
| CACATCAAGTGGCAGTATCA+AGG | 0.493896 | 3.3:-80692682 | MS.gene049207:CDS |
| TGGTTTCCGTACCGTACATC+AGG | 0.494727 | 3.3:-80701173 | MS.gene049207:intron |
| TGAATTTGAATGTGCAGAAT+GGG | 0.497060 | 3.3:-80703081 | MS.gene049207:CDS |
| TACGTTGCAATTCATCGTGT+CGG | 0.498329 | 3.3:+80700775 | None:intergenic |
| CGATATCTTGCGTATTAGAT+GGG | 0.499932 | 3.3:-80699154 | MS.gene049207:CDS |
| GGATCGAACTTGCTTCAAAA+GGG | 0.500443 | 3.3:+80693226 | None:intergenic |
| TACTGTGTTTACCTGATGTA+CGG | 0.500562 | 3.3:+80701162 | None:intergenic |
| ACGGTTCTACTCCGAGTTGG+TGG | 0.503869 | 3.3:-80703853 | MS.gene049207:CDS |
| AGTTTATACTTCCTCAAAGC+GGG | 0.504195 | 3.3:+80698495 | None:intergenic |
| GAAGCAAGTTCGATCCCTCC+AGG | 0.506162 | 3.3:-80693219 | MS.gene049207:intron |
| CCTTACTTGGTGGCTTGGAA+GGG | 0.506508 | 3.3:-80702713 | MS.gene049207:CDS |
| ACAGGCACGGGATGTTGAAA+AGG | 0.508458 | 3.3:-80695342 | MS.gene049207:intron |
| TTGAATTTGAATGTGCAGAA+TGG | 0.510121 | 3.3:-80703082 | MS.gene049207:CDS |
| CTGTTGTGTTGCTGTCATGT+TGG | 0.511164 | 3.3:+80700839 | None:intergenic |
| TGAGGGTGCAACGGAGGAGA+CGG | 0.516357 | 3.3:+80704042 | None:intergenic |
| CTTGATACTGCCACTTGATG+TGG | 0.517898 | 3.3:+80692683 | None:intergenic |
| GAGGATGAAAGATTTATTGG+TGG | 0.520632 | 3.3:-80702752 | MS.gene049207:CDS |
| GGCTTATTATCAGTTGTCAC+GGG | 0.521352 | 3.3:+80693675 | None:intergenic |
| ACGAAACAGCTGGCAACTCT+GGG | 0.522632 | 3.3:-80694496 | MS.gene049207:CDS |
| GGTAGCTCCTTCCCCTTCAA+AGG | 0.523827 | 3.3:+80703125 | None:intergenic |
| ATTGGAAAGAATCACAAATG+AGG | 0.524767 | 3.3:-80693733 | MS.gene049207:CDS |
| CGACGTTGGCAATATCAGTC+AGG | 0.527670 | 3.3:-80694451 | MS.gene049207:intron |
| GGATGCCAGTTCCCATTAAG+GGG | 0.532070 | 3.3:+80701012 | None:intergenic |
| ATGGACGAGTTGATCCTTGT+AGG | 0.532730 | 3.3:-80702489 | MS.gene049207:intron |
| CGTAATTATCTAATGGCTGA+TGG | 0.532739 | 3.3:-80703047 | MS.gene049207:CDS |
| TAAAACTAGGTCACAAGACA+TGG | 0.532905 | 3.3:-80700883 | MS.gene049207:CDS |
| AGGCTTATTATCAGTTGTCA+CGG | 0.533006 | 3.3:+80693674 | None:intergenic |
| CTTGAAGAACATTTGCAGAC+AGG | 0.533759 | 3.3:-80692637 | MS.gene049207:CDS |
| ACAATCTTATACACTGCTAC+AGG | 0.533787 | 3.3:-80698309 | MS.gene049207:intron |
| TTTGCATGATGGAGAGAGCT+TGG | 0.537529 | 3.3:-80702560 | MS.gene049207:CDS |
| CACCAAATTCTTCCGGCGAA+CGG | 0.538122 | 3.3:-80703872 | MS.gene049207:CDS |
| AGCTCAAGAGCTTGTTGATG+AGG | 0.539357 | 3.3:+80703976 | None:intergenic |
| GTTCAGCTCGATCCCGACAA+TGG | 0.539525 | 3.3:-80695296 | MS.gene049207:CDS |
| CATGTAAACACCACAACTGA+AGG | 0.541759 | 3.3:+80698527 | None:intergenic |
| AGTCAGCTGAGATGGCAGCT+GGG | 0.541850 | 3.3:-80701222 | MS.gene049207:CDS |
| TCAAATTCAACCAGAGACAA+AGG | 0.543600 | 3.3:+80703095 | None:intergenic |
| CAAATTCAACCAGAGACAAA+GGG | 0.546452 | 3.3:+80703096 | None:intergenic |
| GGCACTGGAAGCCGCTCAGA+TGG | 0.547679 | 3.3:-80693796 | MS.gene049207:CDS |
| ACAGAGACGGTGAAGGAGTG+AGG | 0.547934 | 3.3:+80704024 | None:intergenic |
| ACCAGAGACAAAGGGAATCT+CGG | 0.550699 | 3.3:+80703104 | None:intergenic |
| CAGAAAGACCAAATGACCCT+AGG | 0.550919 | 3.3:-80698149 | MS.gene049207:CDS |
| CAAGTAACATACCATAACCT+AGG | 0.552661 | 3.3:+80698132 | None:intergenic |
| CAGTATGTCAGATGTTTCAG+AGG | 0.556453 | 3.3:+80700941 | None:intergenic |
| TGTAATTGCAGGCCTTTGAA+GGG | 0.557883 | 3.3:-80703137 | MS.gene049207:intron |
| ACTCGATGTTTCCAGATGGT+TGG | 0.558482 | 3.3:-80695874 | MS.gene049207:CDS |
| GCAGCAATTCAAGATTAAGC+TGG | 0.561054 | 3.3:+80703895 | None:intergenic |
| AGCATCTTTAGAACTTTGCA+GGG | 0.561958 | 3.3:-80692721 | MS.gene049207:CDS |
| ACACAAGTTCGTCAAACAGT+GGG | 0.563604 | 3.3:-80701043 | MS.gene049207:CDS |
| TAATAGATCTGCTAGAGCTA+AGG | 0.563608 | 3.3:-80696610 | MS.gene049207:intron |
| GCACAGTTGAACAGACTCGC+AGG | 0.565460 | 3.3:-80703794 | MS.gene049207:CDS |
| GCCCGCAGTGCATACAATAG+AGG | 0.566492 | 3.3:-80696089 | MS.gene049207:CDS |
| GGAAGCCGCTCAGATGGTGT+TGG | 0.567358 | 3.3:-80693790 | MS.gene049207:CDS |
| TTGCAGGCCTTTGAAGGGGA+AGG | 0.568013 | 3.3:-80703132 | MS.gene049207:intron |
| GATGAGTTTACTGGATTGGG+AGG | 0.569371 | 3.3:+80703920 | None:intergenic |
| TGCCAGTTCCCATTAAGGGG+TGG | 0.574271 | 3.3:+80701015 | None:intergenic |
| ATGCTGATGACTCTAAAACT+AGG | 0.575149 | 3.3:-80700896 | MS.gene049207:CDS |
| GGAGACGGAGCTCGTAGCGA+CGG | 0.575182 | 3.3:+80704057 | None:intergenic |
| GAAAGAATTCCCTTCAGTTG+TGG | 0.580344 | 3.3:-80698537 | MS.gene049207:CDS |
| CGTAGCGACGGATTCCGGTA+AGG | 0.585651 | 3.3:+80704069 | None:intergenic |
| TTACTCAATGTAATTTCACT+GGG | 0.589203 | 3.3:-80703728 | MS.gene049207:intron |
| CGTTCGCCGGAAGAATTTGG+TGG | 0.591439 | 3.3:+80703873 | None:intergenic |
| CTCAGCGCGATCCACCAACT+CGG | 0.592593 | 3.3:+80703842 | None:intergenic |
| TCCAGCCTCTAAATGAAGCA+AGG | 0.594886 | 3.3:+80702528 | None:intergenic |
| CTCTTGAGCTCAATTGAGTG+TGG | 0.595086 | 3.3:-80703963 | MS.gene049207:CDS |
| CAGAGACGGTGAAGGAGTGA+GGG | 0.598470 | 3.3:+80704025 | None:intergenic |
| TGCCAACGTCGACTGCGACA+TGG | 0.600345 | 3.3:+80694463 | None:intergenic |
| CTCGGAGTAGAACCGTTCGC+CGG | 0.600520 | 3.3:+80703860 | None:intergenic |
| GTGAAGGAGTGAGGGTGCAA+CGG | 0.601666 | 3.3:+80704033 | None:intergenic |
| GGTGCGTTGTGGCTTGATAG+GGG | 0.602001 | 3.3:-80698368 | MS.gene049207:CDS |
| AGTCTGTTCAACTGTGCTAA+CGG | 0.603392 | 3.3:+80703800 | None:intergenic |
| GAGCTTGTTGATGAGGTCAT+CGG | 0.605219 | 3.3:+80703983 | None:intergenic |
| GGATATGGCTCCTTACATTG+AGG | 0.608735 | 3.3:-80699381 | MS.gene049207:CDS |
| TTTGAAGACAGAGACGGTGA+AGG | 0.612384 | 3.3:+80704017 | None:intergenic |
| AAGGAGTGAGGGTGCAACGG+AGG | 0.616925 | 3.3:+80704036 | None:intergenic |
| TGTTTACCTGATGTACGGTA+CGG | 0.617826 | 3.3:+80701167 | None:intergenic |
| GGAAAGAATCACAAATGAGG+TGG | 0.620263 | 3.3:-80693730 | MS.gene049207:CDS |
| CGAACGGTTCTACTCCGAGT+TGG | 0.620664 | 3.3:-80703856 | MS.gene049207:CDS |
| CTTGTTGATGAGGTCATCGG+AGG | 0.624211 | 3.3:+80703986 | None:intergenic |
| ATTATTGGTAATGTCACCCA+AGG | 0.625719 | 3.3:+80696668 | None:intergenic |
| ATGGAAATATCCACATCAAG+TGG | 0.626161 | 3.3:-80692693 | MS.gene049207:CDS |
| GTCGTTGCGTAGTCGAACAA+AGG | 0.630907 | 3.3:-80699130 | MS.gene049207:CDS |
| GCTTCAGCTTTCAGTTACTG+GGG | 0.631881 | 3.3:-80701200 | MS.gene049207:CDS |
| AAGTAACATACCATAACCTA+GGG | 0.632429 | 3.3:+80698133 | None:intergenic |
| TTTGTAACAGACGAAACAGC+TGG | 0.632458 | 3.3:-80694506 | MS.gene049207:intron |
| GTAATTGCAGGCCTTTGAAG+GGG | 0.637937 | 3.3:-80703136 | MS.gene049207:intron |
| TCTGACATAGGCTGAACCAA+AGG | 0.638057 | 3.3:-80701087 | MS.gene049207:intron |
| ATGTAAACACCACAACTGAA+GGG | 0.638438 | 3.3:+80698528 | None:intergenic |
| TCCATGAGAACTGACCTACA+AGG | 0.638492 | 3.3:+80702475 | None:intergenic |
| TCACAAATGAGGTGGAAAAG+CGG | 0.643464 | 3.3:-80693722 | MS.gene049207:CDS |
| TCGGAATTTGAAGACAGAGA+CGG | 0.646781 | 3.3:+80704011 | None:intergenic |
| AACACAAGTTCGTCAAACAG+TGG | 0.646857 | 3.3:-80701044 | MS.gene049207:CDS |
| ATGAACTCGATGTTTCCAGA+TGG | 0.649368 | 3.3:-80695878 | MS.gene049207:CDS |
| AATGAAGTAAGAGAAATGCT+GGG | 0.649603 | 3.3:+80699349 | None:intergenic |
| TTATTATCAGTTGTCACGGG+AGG | 0.651094 | 3.3:+80693678 | None:intergenic |
| TTTCAATTTCAGAGAGTACG+GGG | 0.651650 | 3.3:-80698398 | MS.gene049207:intron |
| TAAATGAAGCAAGGAAACGA+TGG | 0.652563 | 3.3:+80702537 | None:intergenic |
| AGCCATGTCGCAGTCGACGT+TGG | 0.652653 | 3.3:-80694465 | MS.gene049207:CDS |
| GGGCTTCAGAACACATCATG+AGG | 0.653743 | 3.3:+80693246 | None:intergenic |
| CTCCTCTATTGTATGCACTG+CGG | 0.656732 | 3.3:+80696087 | None:intergenic |
| CACAGTTGAACAGACTCGCA+GGG | 0.662195 | 3.3:-80703793 | MS.gene049207:CDS |
| GATGCAAATTATTTCCACCA+TGG | 0.670996 | 3.3:+80700973 | None:intergenic |
| GCGTTGTGGCTTGATAGGGG+AGG | 0.671651 | 3.3:-80698365 | MS.gene049207:CDS |
| AAGTTTATACTTCCTCAAAG+CGG | 0.675338 | 3.3:+80698494 | None:intergenic |
| CTGTTCAACTGTGCTAACGG+TGG | 0.675453 | 3.3:+80703803 | None:intergenic |
| CCTTAAGGGACATACCTGGA+GGG | 0.679981 | 3.3:+80693205 | None:intergenic |
| GGATATGGACCTGAAATCTG+GGG | 0.697079 | 3.3:-80693302 | MS.gene049207:CDS |
| ACATGTGATGACAGCCATGG+TGG | 0.702452 | 3.3:-80700987 | MS.gene049207:CDS |
| CACAAGTTCGTCAAACAGTG+GGG | 0.711939 | 3.3:-80701042 | MS.gene049207:CDS |
| TATGTCCAACACCATCTGAG+CGG | 0.719779 | 3.3:+80693785 | None:intergenic |
| TCAGCTCGATCCCGACAATG+GGG | 0.723688 | 3.3:-80695294 | MS.gene049207:CDS |
| GTTCTTCAAGTGCATCTCAG+CGG | 0.733559 | 3.3:+80692650 | None:intergenic |
| CAAACATGTGATGACAGCCA+TGG | 0.752317 | 3.3:-80700990 | MS.gene049207:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 80692620 | 80704114 | 80692620 | ID=MS.gene049207 |
| chr3.3 | mRNA | 80692620 | 80704114 | 80692620 | ID=MS.gene049207.t1;Parent=MS.gene049207 |
| chr3.3 | exon | 80703729 | 80704114 | 80703729 | ID=MS.gene049207.t1.exon1;Parent=MS.gene049207.t1 |
| chr3.3 | CDS | 80703729 | 80704114 | 80703729 | ID=cds.MS.gene049207.t1;Parent=MS.gene049207.t1 |
| chr3.3 | exon | 80703013 | 80703148 | 80703013 | ID=MS.gene049207.t1.exon2;Parent=MS.gene049207.t1 |
| chr3.3 | CDS | 80703013 | 80703148 | 80703013 | ID=cds.MS.gene049207.t1;Parent=MS.gene049207.t1 |
| chr3.3 | exon | 80702490 | 80702803 | 80702490 | ID=MS.gene049207.t1.exon3;Parent=MS.gene049207.t1 |
| chr3.3 | CDS | 80702490 | 80702803 | 80702490 | ID=cds.MS.gene049207.t1;Parent=MS.gene049207.t1 |
| chr3.3 | exon | 80701174 | 80701255 | 80701174 | ID=MS.gene049207.t1.exon4;Parent=MS.gene049207.t1 |
| chr3.3 | CDS | 80701174 | 80701255 | 80701174 | ID=cds.MS.gene049207.t1;Parent=MS.gene049207.t1 |
| chr3.3 | exon | 80700778 | 80701099 | 80700778 | ID=MS.gene049207.t1.exon5;Parent=MS.gene049207.t1 |
| chr3.3 | CDS | 80700778 | 80701099 | 80700778 | ID=cds.MS.gene049207.t1;Parent=MS.gene049207.t1 |
| chr3.3 | exon | 80699349 | 80699407 | 80699349 | ID=MS.gene049207.t1.exon6;Parent=MS.gene049207.t1 |
| chr3.3 | CDS | 80699349 | 80699407 | 80699349 | ID=cds.MS.gene049207.t1;Parent=MS.gene049207.t1 |
| chr3.3 | exon | 80699101 | 80699190 | 80699101 | ID=MS.gene049207.t1.exon7;Parent=MS.gene049207.t1 |
| chr3.3 | CDS | 80699101 | 80699190 | 80699101 | ID=cds.MS.gene049207.t1;Parent=MS.gene049207.t1 |
| chr3.3 | exon | 80698504 | 80698595 | 80698504 | ID=MS.gene049207.t1.exon8;Parent=MS.gene049207.t1 |
| chr3.3 | CDS | 80698504 | 80698595 | 80698504 | ID=cds.MS.gene049207.t1;Parent=MS.gene049207.t1 |
| chr3.3 | exon | 80698310 | 80698408 | 80698310 | ID=MS.gene049207.t1.exon9;Parent=MS.gene049207.t1 |
| chr3.3 | CDS | 80698310 | 80698408 | 80698310 | ID=cds.MS.gene049207.t1;Parent=MS.gene049207.t1 |
| chr3.3 | exon | 80698144 | 80698221 | 80698144 | ID=MS.gene049207.t1.exon10;Parent=MS.gene049207.t1 |
| chr3.3 | CDS | 80698144 | 80698221 | 80698144 | ID=cds.MS.gene049207.t1;Parent=MS.gene049207.t1 |
| chr3.3 | exon | 80696611 | 80696695 | 80696611 | ID=MS.gene049207.t1.exon11;Parent=MS.gene049207.t1 |
| chr3.3 | CDS | 80696611 | 80696695 | 80696611 | ID=cds.MS.gene049207.t1;Parent=MS.gene049207.t1 |
| chr3.3 | exon | 80696062 | 80696120 | 80696062 | ID=MS.gene049207.t1.exon12;Parent=MS.gene049207.t1 |
| chr3.3 | CDS | 80696062 | 80696120 | 80696062 | ID=cds.MS.gene049207.t1;Parent=MS.gene049207.t1 |
| chr3.3 | exon | 80695847 | 80695916 | 80695847 | ID=MS.gene049207.t1.exon13;Parent=MS.gene049207.t1 |
| chr3.3 | CDS | 80695847 | 80695916 | 80695847 | ID=cds.MS.gene049207.t1;Parent=MS.gene049207.t1 |
| chr3.3 | exon | 80695269 | 80695360 | 80695269 | ID=MS.gene049207.t1.exon14;Parent=MS.gene049207.t1 |
| chr3.3 | CDS | 80695269 | 80695360 | 80695269 | ID=cds.MS.gene049207.t1;Parent=MS.gene049207.t1 |
| chr3.3 | exon | 80694685 | 80694747 | 80694685 | ID=MS.gene049207.t1.exon15;Parent=MS.gene049207.t1 |
| chr3.3 | CDS | 80694685 | 80694747 | 80694685 | ID=cds.MS.gene049207.t1;Parent=MS.gene049207.t1 |
| chr3.3 | exon | 80694452 | 80694518 | 80694452 | ID=MS.gene049207.t1.exon16;Parent=MS.gene049207.t1 |
| chr3.3 | CDS | 80694452 | 80694518 | 80694452 | ID=cds.MS.gene049207.t1;Parent=MS.gene049207.t1 |
| chr3.3 | exon | 80693560 | 80693817 | 80693560 | ID=MS.gene049207.t1.exon17;Parent=MS.gene049207.t1 |
| chr3.3 | CDS | 80693560 | 80693817 | 80693560 | ID=cds.MS.gene049207.t1;Parent=MS.gene049207.t1 |
| chr3.3 | exon | 80693220 | 80693342 | 80693220 | ID=MS.gene049207.t1.exon18;Parent=MS.gene049207.t1 |
| chr3.3 | CDS | 80693220 | 80693342 | 80693220 | ID=cds.MS.gene049207.t1;Parent=MS.gene049207.t1 |
| chr3.3 | exon | 80692620 | 80692790 | 80692620 | ID=MS.gene049207.t1.exon19;Parent=MS.gene049207.t1 |
| chr3.3 | CDS | 80692620 | 80692790 | 80692620 | ID=cds.MS.gene049207.t1;Parent=MS.gene049207.t1 |
| Gene Sequence |
| Protein sequence |
