Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063232.t1 | XP_013467067.1 | 84.9 | 1109 | 162 | 2 | 1 | 1104 | 1 | 1109 | 0.00E+00 | 1478.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063232.t1 | P26368 | 31.6 | 380 | 214 | 9 | 512 | 872 | 67 | 419 | 1.0e-34 | 150.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063232.t1 | A0A072VGZ7 | 84.9 | 1109 | 162 | 2 | 1 | 1104 | 1 | 1109 | 0.0e+00 | 1478.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene053351 | MS.gene063232 | 0.846009 | 2.84E-59 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063232.t1 | MTR_1g041735 | 94.590 | 1109 | 55 | 2 | 1 | 1104 | 1 | 1109 | 0.0 | 1993 |
MS.gene063232.t1 | MTR_1g041735 | 94.771 | 1071 | 51 | 2 | 39 | 1104 | 1 | 1071 | 0.0 | 1917 |
MS.gene063232.t1 | MTR_1g041735 | 95.215 | 836 | 39 | 1 | 1 | 835 | 1 | 836 | 0.0 | 1483 |
MS.gene063232.t1 | MTR_1g041735 | 94.268 | 663 | 34 | 1 | 446 | 1104 | 289 | 951 | 0.0 | 1259 |
MS.gene063232.t1 | MTR_1g041735 | 88.732 | 355 | 39 | 1 | 39 | 392 | 1 | 355 | 4.11e-178 | 546 |
MS.gene063232.t1 | MTR_3g005670 | 28.212 | 358 | 224 | 10 | 552 | 880 | 223 | 576 | 4.46e-32 | 133 |
MS.gene063232.t1 | MTR_3g005670 | 27.500 | 360 | 222 | 10 | 552 | 880 | 223 | 574 | 4.75e-32 | 133 |
MS.gene063232.t1 | MTR_3g005670 | 28.291 | 357 | 223 | 10 | 552 | 879 | 223 | 575 | 7.75e-32 | 133 |
MS.gene063232.t1 | MTR_3g005670 | 27.577 | 359 | 221 | 10 | 552 | 879 | 223 | 573 | 9.72e-32 | 133 |
MS.gene063232.t1 | MTR_3g005670 | 28.571 | 343 | 212 | 10 | 552 | 865 | 223 | 561 | 3.42e-31 | 130 |
MS.gene063232.t1 | MTR_3g005670 | 28.212 | 358 | 224 | 10 | 552 | 880 | 223 | 576 | 2.67e-30 | 128 |
MS.gene063232.t1 | MTR_3g005670 | 27.500 | 360 | 222 | 10 | 552 | 880 | 223 | 574 | 2.91e-30 | 128 |
MS.gene063232.t1 | MTR_4g031680 | 28.532 | 361 | 215 | 11 | 553 | 880 | 174 | 524 | 5.23e-29 | 124 |
MS.gene063232.t1 | MTR_2g013130 | 27.978 | 361 | 209 | 11 | 564 | 886 | 116 | 463 | 9.70e-29 | 122 |
MS.gene063232.t1 | MTR_2g013130 | 26.650 | 394 | 221 | 13 | 532 | 886 | 114 | 478 | 1.16e-26 | 116 |
MS.gene063232.t1 | MTR_2g013130 | 28.526 | 312 | 177 | 8 | 606 | 881 | 9 | 310 | 1.32e-26 | 113 |
MS.gene063232.t1 | MTR_2g013130 | 28.931 | 318 | 178 | 9 | 606 | 886 | 52 | 358 | 1.43e-23 | 105 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063232.t1 | AT2G33435 | 40.801 | 674 | 327 | 17 | 440 | 1102 | 710 | 1322 | 1.07e-132 | 436 |
MS.gene063232.t1 | AT1G60900 | 27.119 | 354 | 203 | 9 | 606 | 933 | 249 | 573 | 4.36e-25 | 112 |
MS.gene063232.t1 | AT4G36690 | 28.374 | 289 | 179 | 7 | 606 | 872 | 211 | 493 | 5.72e-25 | 111 |
MS.gene063232.t1 | AT4G36690 | 28.374 | 289 | 179 | 7 | 606 | 872 | 233 | 515 | 7.49e-25 | 111 |
MS.gene063232.t1 | AT4G36690 | 28.929 | 280 | 171 | 7 | 606 | 863 | 233 | 506 | 4.24e-23 | 105 |
MS.gene063232.t1 | AT4G36690 | 28.674 | 279 | 171 | 7 | 606 | 862 | 233 | 505 | 2.09e-22 | 103 |
Find 226 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTTCCTTAATGTCCTTTC+TGG | 0.074338 | 1.3:+25018332 | None:intergenic |
TTTGATGGCATTAAACTATT+TGG | 0.166954 | 1.3:-25025320 | MS.gene063232:CDS |
ATGGAGATTGCTGGTGTCTT+TGG | 0.211795 | 1.3:-25021627 | MS.gene063232:CDS |
AGCAAATTCAACATAGTCTT+TGG | 0.212667 | 1.3:+25025274 | None:intergenic |
CACGGGAATCGAAGAAATTT+TGG | 0.228771 | 1.3:-25019006 | MS.gene063232:CDS |
TCAGCTGCTCTTTCCTTTGA+TGG | 0.233883 | 1.3:-25025335 | MS.gene063232:CDS |
TAAGATTCCATCCTTTAAAA+TGG | 0.236439 | 1.3:-25027191 | MS.gene063232:CDS |
ACTCTAGCTCCTATTTCTTC+TGG | 0.240152 | 1.3:-25025801 | MS.gene063232:CDS |
TCTTGACCGTCTCCTCTTCA+TGG | 0.255384 | 1.3:+25026514 | None:intergenic |
TTATGATGTTTATAGATTCT+TGG | 0.260739 | 1.3:+25027211 | None:intergenic |
TTTGCAGGCATACCTTGTTT+GGG | 0.293827 | 1.3:+25023790 | None:intergenic |
TCCACCTGTTCCTTTAGAAT+TGG | 0.321515 | 1.3:+25018704 | None:intergenic |
AGCAGTGGCTTTGCATGCTC+TGG | 0.328489 | 1.3:+25020067 | None:intergenic |
TTCTCTGGAGAATGCTTAGA+TGG | 0.340468 | 1.3:+25025867 | None:intergenic |
CATCCAGCACGTTTCTTCTC+TGG | 0.343040 | 1.3:+25025852 | None:intergenic |
ATAATCTCTTCAAAACTAAA+TGG | 0.343513 | 1.3:+25027346 | None:intergenic |
AAACACGGTTCGTCCATTTC+AGG | 0.343902 | 1.3:-25018397 | MS.gene063232:CDS |
AATTCAAAACCAGAAGAAAT+AGG | 0.349700 | 1.3:+25025792 | None:intergenic |
ATTTAATCCAGCACTTGATT+TGG | 0.353132 | 1.3:+25027051 | None:intergenic |
GGAAGTATTAACAGTTGTTC+AGG | 0.353180 | 1.3:-25020276 | MS.gene063232:CDS |
GATAGTAAACCACCATCTTA+TGG | 0.353960 | 1.3:-25020094 | MS.gene063232:CDS |
TGGTGTCTTTGGATCTTTGA+AGG | 0.354415 | 1.3:-25021616 | MS.gene063232:CDS |
CCAGAAAAGCCCTCCTGAAA+TGG | 0.361049 | 1.3:+25018384 | None:intergenic |
TCAAGATAAACCCTTCTCAT+AGG | 0.365121 | 1.3:+25025612 | None:intergenic |
TGGTTCCAGAAAGGACATTA+AGG | 0.366182 | 1.3:-25018337 | MS.gene063232:CDS |
GGAACCAACTAATTCTAAAC+TGG | 0.370521 | 1.3:+25018353 | None:intergenic |
GTCGGGAGCGTGAGGATAGA+AGG | 0.371006 | 1.3:-25026133 | MS.gene063232:CDS |
GCTTGCAGGTGCATAAAGAT+AGG | 0.374950 | 1.3:-25025397 | MS.gene063232:intron |
AATTTCAAATCTCGTTTCTT+CGG | 0.377106 | 1.3:-25021807 | MS.gene063232:CDS |
ATTATTGTCCTTGCAATGTC+TGG | 0.382246 | 1.3:+25018842 | None:intergenic |
AGTGCTGGATTAAATAATAA+AGG | 0.387810 | 1.3:-25027043 | MS.gene063232:CDS |
GCAGAGGGTAGAGCAAAATA+TGG | 0.393597 | 1.3:-25026722 | MS.gene063232:CDS |
TGCCCTTGGTGAAAGAGAAC+GGG | 0.395787 | 1.3:+25026463 | None:intergenic |
GTTGTCCAGCATGCATGATT+TGG | 0.407879 | 1.3:-25025754 | MS.gene063232:CDS |
GAGTTGCTTGAAAATGTAAA+AGG | 0.412364 | 1.3:-25027304 | MS.gene063232:CDS |
TGGAACTCTGGATCATCATT+AGG | 0.413072 | 1.3:+25018483 | None:intergenic |
CAACTAATGGTTCAAGTAGA+AGG | 0.416034 | 1.3:-25026163 | MS.gene063232:CDS |
TTTGAAGGCTTACCACTTTG+AGG | 0.418380 | 1.3:-25021601 | MS.gene063232:CDS |
ACGAAAGATGATTTAATTGA+AGG | 0.421610 | 1.3:-25027103 | MS.gene063232:CDS |
GACCGTCTCCTCTTCATGGT+TGG | 0.425429 | 1.3:+25026518 | None:intergenic |
AGAGGGACGAAAGAAGTAAT+TGG | 0.426732 | 1.3:-25027414 | MS.gene063232:CDS |
GCAAATTCAACATAGTCTTT+GGG | 0.428057 | 1.3:+25025275 | None:intergenic |
CTCTGAGTCTATACAGAGAA+AGG | 0.429603 | 1.3:-25018173 | MS.gene063232:CDS |
AATAACCTCTTGCTTTCTTC+CGG | 0.430687 | 1.3:-25025543 | MS.gene063232:CDS |
TTAGTAACAGTGTGTGTGTC+TGG | 0.432948 | 1.3:+25018765 | None:intergenic |
AGTAGCCCTGCTAGTGGACT+TGG | 0.433461 | 1.3:-25025942 | MS.gene063232:CDS |
TTATTCCACGCTTCCTTAGC+AGG | 0.433488 | 1.3:+25027280 | None:intergenic |
AGCTGCTGATCGACATGCTT+CGG | 0.433768 | 1.3:+25018251 | None:intergenic |
TACTCCAATTCTAAAGGAAC+AGG | 0.435354 | 1.3:-25018708 | MS.gene063232:CDS |
CATTCAAGGATGTCCTGATC+AGG | 0.436067 | 1.3:-25018514 | MS.gene063232:CDS |
TATAATCATGTATTTGAAGA+AGG | 0.438748 | 1.3:-25018300 | MS.gene063232:CDS |
GGCACATAGAAAGACTTATC+AGG | 0.444800 | 1.3:-25026087 | MS.gene063232:CDS |
GGCCACATGAATTGATTTAA+CGG | 0.449065 | 1.3:+25018863 | None:intergenic |
CGTTAGCAACCATGCTATCA+TGG | 0.449242 | 1.3:+25018463 | None:intergenic |
GGATGGGATCTTCCTCCTGT+AGG | 0.450661 | 1.3:-25025834 | MS.gene063232:CDS |
CAAATAATGGTTCAAGTAGA+AGG | 0.452572 | 1.3:-25026340 | MS.gene063232:CDS |
AAAGCTTGTGCGGGTTTGAA+TGG | 0.460255 | 1.3:-25020314 | MS.gene063232:CDS |
CTTGCAGGTGCATAAAGATA+GGG | 0.463742 | 1.3:-25025396 | MS.gene063232:intron |
CAAAGAGCCAACACAAGTAC+TGG | 0.466512 | 1.3:-25020044 | MS.gene063232:CDS |
GATGCCAGTTTAGAATTAGT+TGG | 0.467941 | 1.3:-25018357 | MS.gene063232:CDS |
TTGCCTAGTAGTACCATTCA+AGG | 0.469110 | 1.3:-25018528 | MS.gene063232:CDS |
TTCTTCCTCTCATAAATGTG+TGG | 0.472735 | 1.3:+25026575 | None:intergenic |
TCCCTCTCCTTCAAACAGTC+AGG | 0.473777 | 1.3:+25027430 | None:intergenic |
GGGTTTGAATGGTATGAGCC+TGG | 0.474594 | 1.3:-25020303 | MS.gene063232:CDS |
GATGGGATCTTCCTCCTGTA+GGG | 0.475215 | 1.3:-25025833 | MS.gene063232:CDS |
TTGCATAGACGTCTCTTTGA+CGG | 0.476927 | 1.3:-25018222 | MS.gene063232:CDS |
GAGCAGACCTGACTGTTTGA+AGG | 0.477729 | 1.3:-25027437 | MS.gene063232:CDS |
TGATACATGGCCGAGTTTGT+TGG | 0.482730 | 1.3:+25025508 | None:intergenic |
TTAGGTGTATTCCCCTGATC+AGG | 0.484350 | 1.3:+25018501 | None:intergenic |
ATATGGAAGAGAAATCAATA+AGG | 0.485629 | 1.3:-25026705 | MS.gene063232:CDS |
CTGGATTAAATAATAAAGGC+TGG | 0.488033 | 1.3:-25027039 | MS.gene063232:CDS |
ATGGTTGGTTCTTCATAATG+TGG | 0.491501 | 1.3:+25026533 | None:intergenic |
GAATGTAAGTTCTAGAAAGA+AGG | 0.491771 | 1.3:-25027143 | MS.gene063232:CDS |
AAATCTCGTTTCTTCGGAGA+TGG | 0.491853 | 1.3:-25021801 | MS.gene063232:intron |
CAAGTAGAAGGTCAAGAAGT+CGG | 0.491913 | 1.3:-25026151 | MS.gene063232:CDS |
GCAACTTCCACTGATCTCTC+TGG | 0.493226 | 1.3:+25023843 | None:intergenic |
AAGTAGAAGGTCAAGAAGTC+GGG | 0.493814 | 1.3:-25026150 | MS.gene063232:CDS |
TTAATCTCCAGTACTTGTGT+TGG | 0.494093 | 1.3:+25020037 | None:intergenic |
CATCCTTGAATGGTACTACT+AGG | 0.494514 | 1.3:+25018525 | None:intergenic |
ACATTTATGAGAGGAAGAAC+AGG | 0.495873 | 1.3:-25026571 | MS.gene063232:CDS |
ACCATGCTATCATGGAACTC+TGG | 0.497465 | 1.3:+25018471 | None:intergenic |
CGAAAGATGATTTAATTGAA+GGG | 0.497973 | 1.3:-25027102 | MS.gene063232:CDS |
TTAGAAACCAAATCAAGTGC+TGG | 0.498284 | 1.3:-25027058 | MS.gene063232:CDS |
GAGGAGACGGTCAAGAAGTC+GGG | 0.498705 | 1.3:-25026507 | MS.gene063232:CDS |
TTGCAGGCATACCTTGTTTG+GGG | 0.500090 | 1.3:+25023791 | None:intergenic |
TAAGTCTTTCTATGTGCCCT+TGG | 0.500562 | 1.3:+25026092 | None:intergenic |
TAGCCACCAAGTCCACTAGC+AGG | 0.501332 | 1.3:+25025936 | None:intergenic |
GGCTTACCACTTTGAGGCAA+GGG | 0.501487 | 1.3:-25021595 | MS.gene063232:CDS |
CTGATGCATCCTCAGCTGTA+AGG | 0.502308 | 1.3:+25025354 | None:intergenic |
CTTACAATGCAGCTGATACA+TGG | 0.502363 | 1.3:+25025495 | None:intergenic |
CATGGCAAAGATAGACATGA+TGG | 0.505567 | 1.3:-25026830 | MS.gene063232:CDS |
TTCTAAAGGAACAGGTGGAA+TGG | 0.507113 | 1.3:-25018700 | MS.gene063232:CDS |
GAGGAAGAACAGGCAGGAAA+AGG | 0.507384 | 1.3:-25026561 | MS.gene063232:CDS |
AGAGTAGGATCTGTCCCTAC+AGG | 0.512461 | 1.3:+25025819 | None:intergenic |
GAAGAAAAGACAAGAGAAGA+GGG | 0.514626 | 1.3:-25027010 | MS.gene063232:CDS |
TAAGTATTTCTGTTTGCCCT+TGG | 0.515292 | 1.3:+25026449 | None:intergenic |
AACAGAAATACTTATCAAGA+TGG | 0.516221 | 1.3:-25026440 | MS.gene063232:CDS |
GGTAGAGGCTTCACGATGGA+TGG | 0.524088 | 1.3:+25025711 | None:intergenic |
CAAGATAAACCCTTCTCATA+GGG | 0.524873 | 1.3:+25025613 | None:intergenic |
AGAGAAGAAACGTGCTGGAT+GGG | 0.525166 | 1.3:-25025850 | MS.gene063232:CDS |
AGCCTCTGAGAAAGTTGTGA+TGG | 0.525404 | 1.3:-25025574 | MS.gene063232:CDS |
AGAATTAGTTGGTTCCAGAA+AGG | 0.525428 | 1.3:-25018346 | MS.gene063232:CDS |
GCTACTTACTCCAATTCTAA+AGG | 0.528933 | 1.3:-25018714 | MS.gene063232:CDS |
GAATGGTATGAGCCTGGGAG+GGG | 0.529449 | 1.3:-25020297 | MS.gene063232:CDS |
AGCCCTGCTAGTGGACTTGG+TGG | 0.529522 | 1.3:-25025939 | MS.gene063232:CDS |
GATTCTCTTCCTCTTCATTG+TGG | 0.530005 | 1.3:+25026879 | None:intergenic |
GGCGGGTAGCATGTGTCAGT+TGG | 0.535324 | 1.3:+25025634 | None:intergenic |
GTTACTATCAAAGCTTGTGC+GGG | 0.537008 | 1.3:-25020323 | MS.gene063232:CDS |
TCTTCCTCTCATAAATGTGT+GGG | 0.537581 | 1.3:+25026576 | None:intergenic |
CAGAGAAGAAACGTGCTGGA+TGG | 0.538719 | 1.3:-25025851 | MS.gene063232:CDS |
TGAATCTAGTTTCTCTGAAG+AGG | 0.539721 | 1.3:-25018736 | MS.gene063232:CDS |
TTGCCCTTGGTGAAAGAGAA+CGG | 0.541173 | 1.3:+25026462 | None:intergenic |
TAAGGAATTCCACAAGCGCT+TGG | 0.541301 | 1.3:+25025372 | None:intergenic |
GACCTGACTGTTTGAAGGAG+AGG | 0.547655 | 1.3:-25027432 | MS.gene063232:CDS |
CTTACCACAGGTGATGCATC+AGG | 0.548034 | 1.3:+25020248 | None:intergenic |
CACAGAAAAGCTTATCAAGA+TGG | 0.548916 | 1.3:-25026260 | MS.gene063232:CDS |
ATTCAAGGATGTCCTGATCA+GGG | 0.549232 | 1.3:-25018513 | MS.gene063232:CDS |
GTGGCTATTCACCAAGGAAG+AGG | 0.549747 | 1.3:-25025920 | MS.gene063232:CDS |
CTGATCAGGACATCCTTGAA+TGG | 0.551575 | 1.3:+25018515 | None:intergenic |
AGATAGGGGCCAAGCGCTTG+TGG | 0.552388 | 1.3:-25025381 | MS.gene063232:CDS |
TCTCCAGAGAAGAAACGTGC+TGG | 0.557279 | 1.3:-25025855 | MS.gene063232:CDS |
ATTGATGTTGAAAAGACAAT+GGG | 0.558472 | 1.3:-25018438 | MS.gene063232:CDS |
AATGGAGAAACATGCTTCAG+AGG | 0.558614 | 1.3:-25027173 | MS.gene063232:CDS |
ACTTTCTCAGAGGCTGAAGC+TGG | 0.559650 | 1.3:+25025582 | None:intergenic |
GATTCAACAGTAATAGATGC+TGG | 0.559785 | 1.3:-25018561 | MS.gene063232:CDS |
CTTCGAGCACTTTGTCACCA+TGG | 0.559910 | 1.3:+25018673 | None:intergenic |
AGAGGAGACGGTCAAGAAGT+CGG | 0.560108 | 1.3:-25026508 | MS.gene063232:CDS |
TGTGTTGGCTCTTTGAGCAG+TGG | 0.560118 | 1.3:+25020052 | None:intergenic |
GTCAAGAAGTCGTGAACGCG+AGG | 0.561101 | 1.3:-25026318 | MS.gene063232:CDS |
AACTACAACATCACTTATTG+TGG | 0.561162 | 1.3:+25023818 | None:intergenic |
TCCAATTCTAAAGGAACAGG+TGG | 0.562370 | 1.3:-25018705 | MS.gene063232:CDS |
AGCAGCCAAATCATGCATGC+TGG | 0.562459 | 1.3:+25025749 | None:intergenic |
ATGCTACCCGCCCTATGAGA+AGG | 0.563863 | 1.3:-25025623 | MS.gene063232:CDS |
TGTGTCTGGAGTAGGTTCTT+CGG | 0.567361 | 1.3:+25018779 | None:intergenic |
AGGCTTACCACTTTGAGGCA+AGG | 0.569190 | 1.3:-25021596 | MS.gene063232:CDS |
TCGAAATGATGATGAAACTC+AGG | 0.569530 | 1.3:-25026642 | MS.gene063232:CDS |
GCCCCGTTCTCTTTCACCAA+GGG | 0.570207 | 1.3:-25026465 | MS.gene063232:CDS |
CACGGTTCGTCCATTTCAGG+AGG | 0.571329 | 1.3:-25018394 | MS.gene063232:CDS |
ATGATGATGAAACTCAGGAC+AGG | 0.573142 | 1.3:-25026637 | MS.gene063232:CDS |
ATAAACCCTTCTCATAGGGC+GGG | 0.573510 | 1.3:+25025617 | None:intergenic |
TGCTACCCGCCCTATGAGAA+GGG | 0.574243 | 1.3:-25025622 | MS.gene063232:CDS |
AAATAGTTTAATGCCATCAA+AGG | 0.574318 | 1.3:+25025322 | None:intergenic |
GTCAAGAAGTCGGGAGCGTG+AGG | 0.575086 | 1.3:-25026141 | MS.gene063232:CDS |
TGAATGGTATGAGCCTGGGA+GGG | 0.575492 | 1.3:-25020298 | MS.gene063232:CDS |
GAAGAAGACAAAGATAATGA+TGG | 0.575789 | 1.3:-25018654 | MS.gene063232:CDS |
TACTATGTCGATATCGTCGA+TGG | 0.575807 | 1.3:+25025961 | None:intergenic |
GGTTTGAATGGTATGAGCCT+GGG | 0.578635 | 1.3:-25020302 | MS.gene063232:CDS |
ACGTCTCTTTGACGGCAGAA+TGG | 0.580375 | 1.3:-25018214 | MS.gene063232:CDS |
CTGACAGAGAAAGCATAGAC+AGG | 0.580633 | 1.3:+25026048 | None:intergenic |
TGTAGTTGATTCCCCAAACA+AGG | 0.580898 | 1.3:-25023802 | MS.gene063232:intron |
AAGAAGTAATTGGCGTTCTG+TGG | 0.581589 | 1.3:-25027404 | MS.gene063232:CDS |
TCATGTGGCCAGACATTGCA+AGG | 0.582086 | 1.3:-25018850 | MS.gene063232:CDS |
ATGAAGAACCAACCATGAAG+AGG | 0.585069 | 1.3:-25026526 | MS.gene063232:CDS |
ACTGTCAGTCAGAGAAAGCA+TGG | 0.586818 | 1.3:+25026220 | None:intergenic |
CTGTTAATACTTCCCCTCCC+AGG | 0.587392 | 1.3:+25020285 | None:intergenic |
TGCTGACCCTTGCCTCAAAG+TGG | 0.589000 | 1.3:+25021589 | None:intergenic |
ACCTGACTGTTTGAAGGAGA+GGG | 0.590195 | 1.3:-25027431 | MS.gene063232:CDS |
AGCCCCGTTCTCTTTCACCA+AGG | 0.591951 | 1.3:-25026466 | MS.gene063232:CDS |
AAATGTAAAAGGTCCTGCTA+AGG | 0.592273 | 1.3:-25027293 | MS.gene063232:CDS |
TCTATCATCTTTATCTGACA+CGG | 0.592596 | 1.3:-25019024 | MS.gene063232:CDS |
TGCTCTGGAATGCCATAAGA+TGG | 0.593271 | 1.3:+25020082 | None:intergenic |
ATGGCAAAGATAGACATGAT+GGG | 0.594996 | 1.3:-25026829 | MS.gene063232:CDS |
AAGATACATCAAAATCTGAA+AGG | 0.595408 | 1.3:-25026919 | MS.gene063232:CDS |
CTATCATCTTTATCTGACAC+GGG | 0.595544 | 1.3:-25019023 | MS.gene063232:CDS |
TGGCAAAGATAGACATGATG+GGG | 0.596315 | 1.3:-25026828 | MS.gene063232:CDS |
TGAAGAAAAGACAAGAGAAG+AGG | 0.599567 | 1.3:-25027011 | MS.gene063232:CDS |
TTGAATGGTATGAGCCTGGG+AGG | 0.600077 | 1.3:-25020299 | MS.gene063232:CDS |
ATGTGCCCTTGGTGAAAGAG+AGG | 0.600670 | 1.3:+25026103 | None:intergenic |
ATAATGAGCATTACACGGAA+AGG | 0.601075 | 1.3:-25026856 | MS.gene063232:CDS |
AGAGATTCAGATAACAAGCA+TGG | 0.603533 | 1.3:-25026953 | MS.gene063232:CDS |
TTTGAGGCAAGGGTCAGCAA+TGG | 0.603633 | 1.3:-25021585 | MS.gene063232:CDS |
GACCGTTAAATCAATTCATG+TGG | 0.604281 | 1.3:-25018865 | MS.gene063232:CDS |
ACAGTGTGTGTGTCTGGAGT+AGG | 0.604688 | 1.3:+25018771 | None:intergenic |
TCCAGAGTTCCATGATAGCA+TGG | 0.606125 | 1.3:-25018472 | MS.gene063232:CDS |
AACCAACCATGAAGAGGAGA+CGG | 0.606604 | 1.3:-25026520 | MS.gene063232:CDS |
GTCAAGAAGTCGGGATCATG+AGG | 0.609418 | 1.3:-25026498 | MS.gene063232:CDS |
CGACATAGTAGCCCTGCTAG+TGG | 0.609672 | 1.3:-25025948 | MS.gene063232:CDS |
GGAGAATGCTTAGATGGTGA+AGG | 0.610969 | 1.3:+25025873 | None:intergenic |
CACAAGATGCTCTTGACATG+TGG | 0.611299 | 1.3:+25018587 | None:intergenic |
TATTGATGTTGAAAAGACAA+TGG | 0.611873 | 1.3:-25018439 | MS.gene063232:CDS |
GATAAACCCTTCTCATAGGG+CGG | 0.612497 | 1.3:+25025616 | None:intergenic |
TGGTGAACCAGAGAGATCAG+TGG | 0.612628 | 1.3:-25023850 | MS.gene063232:CDS |
TGTGGAATTCCTTACAGCTG+AGG | 0.612965 | 1.3:-25025363 | MS.gene063232:CDS |
ACAGGTGGAATGGAGTTCCA+TGG | 0.613269 | 1.3:-25018690 | MS.gene063232:CDS |
TGTTACTATCAAAGCTTGTG+CGG | 0.614885 | 1.3:-25020324 | MS.gene063232:CDS |
TAAATCATCTTTCGTCACGA+TGG | 0.615304 | 1.3:+25027111 | None:intergenic |
TGTGCCCTTGGTGAAAGAGA+GGG | 0.616915 | 1.3:+25026104 | None:intergenic |
AAGACAAGAGAAGAGGGGCG+TGG | 0.617122 | 1.3:-25027004 | MS.gene063232:CDS |
TTCAAGGATGTCCTGATCAG+GGG | 0.620193 | 1.3:-25018512 | MS.gene063232:CDS |
AGATAAGCATATCCATGCAG+AGG | 0.625598 | 1.3:-25026738 | MS.gene063232:CDS |
GTGCCCTTGGTGAAAGAGAG+GGG | 0.627220 | 1.3:+25026105 | None:intergenic |
AGCCACCAAGTCCACTAGCA+GGG | 0.629194 | 1.3:+25025937 | None:intergenic |
AAGGTCCTGCTAAGGAAGCG+TGG | 0.629212 | 1.3:-25027285 | MS.gene063232:CDS |
CATTACACGGAAAGGAAGCA+TGG | 0.629831 | 1.3:-25026848 | MS.gene063232:CDS |
GATAAGCATATCCATGCAGA+GGG | 0.630334 | 1.3:-25026737 | MS.gene063232:CDS |
CATAGAAAGACTTATCAGGA+TGG | 0.632216 | 1.3:-25026083 | MS.gene063232:CDS |
GCGTGGAATAAATCACCTGA+AGG | 0.633959 | 1.3:-25027268 | MS.gene063232:CDS |
CAATACAGACTCAGAAAACA+CGG | 0.635402 | 1.3:-25018412 | MS.gene063232:CDS |
ACTATCTGTCAGAGAAAGCA+CGG | 0.636048 | 1.3:+25026400 | None:intergenic |
CTCAGGACAGGAATGCAATG+AGG | 0.637840 | 1.3:-25026625 | MS.gene063232:CDS |
TTGTTGGATATGATTTACAC+CGG | 0.638547 | 1.3:+25025524 | None:intergenic |
TTGCAGGTGCATAAAGATAG+GGG | 0.639374 | 1.3:-25025395 | MS.gene063232:intron |
ACGGTTCGTCCATTTCAGGA+GGG | 0.639891 | 1.3:-25018393 | MS.gene063232:CDS |
TTATGAGAGGAAGAACAGGC+AGG | 0.640101 | 1.3:-25026567 | MS.gene063232:CDS |
GAAGAAATAGGAGCTAGAGT+AGG | 0.640117 | 1.3:+25025804 | None:intergenic |
GTGAACGCGAGGATAGAAGA+AGG | 0.647217 | 1.3:-25026307 | MS.gene063232:CDS |
GTAGGATCTGTCCCTACAGG+AGG | 0.648976 | 1.3:+25025822 | None:intergenic |
TTACACCGGAAGAAAGCAAG+AGG | 0.652037 | 1.3:+25025538 | None:intergenic |
GCCCTTGGTGAAAGAGAACG+GGG | 0.652802 | 1.3:+25026464 | None:intergenic |
ATGTACGATTGGAATGTGCA+AGG | 0.656570 | 1.3:-25018980 | MS.gene063232:intron |
TGCCCTTGGTGAAAGAGAGG+GGG | 0.657952 | 1.3:+25026106 | None:intergenic |
GGCAAAGATAGACATGATGG+GGG | 0.664242 | 1.3:-25026827 | MS.gene063232:CDS |
GAATCATAATGAGCATTACA+CGG | 0.667336 | 1.3:-25026861 | MS.gene063232:CDS |
ATCCATCACAACTTTCTCAG+AGG | 0.669505 | 1.3:+25025572 | None:intergenic |
TAAATCATATCCAACAAACT+CGG | 0.671795 | 1.3:-25025518 | MS.gene063232:CDS |
ATAACCCACACATTTATGAG+AGG | 0.685858 | 1.3:-25026580 | MS.gene063232:CDS |
GGGAGCGTGAGGATAGAAGG+AGG | 0.689194 | 1.3:-25026130 | MS.gene063232:CDS |
CACTGGTAGAGGCTTCACGA+TGG | 0.692309 | 1.3:+25025707 | None:intergenic |
TATGTCGATATCGTCGATGG+TGG | 0.693966 | 1.3:+25025964 | None:intergenic |
GACTTGGTGGCTATTCACCA+AGG | 0.697367 | 1.3:-25025926 | MS.gene063232:CDS |
AAGAAAAGACAAGAGAAGAG+GGG | 0.697944 | 1.3:-25027009 | MS.gene063232:CDS |
TCTTGCGTACTCAACAAGAA+CGG | 0.698477 | 1.3:+25018275 | None:intergenic |
TATGCCTGATGCATCACCTG+TGG | 0.720348 | 1.3:-25020252 | MS.gene063232:intron |
GCAAAGATAGACATGATGGG+GGG | 0.730288 | 1.3:-25026826 | MS.gene063232:CDS |
TTAATTTGAATAGTTCACAG+TGG | 0.736809 | 1.3:-25019051 | MS.gene063232:intron |
TCTGGAATGCCATAAGATGG+TGG | 0.747907 | 1.3:+25020085 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 25018161 | 25027461 | 25018161 | ID=MS.gene063232 |
chr1.3 | mRNA | 25018161 | 25027461 | 25018161 | ID=MS.gene063232.t1;Parent=MS.gene063232 |
chr1.3 | exon | 25025500 | 25027461 | 25025500 | ID=MS.gene063232.t1.exon1;Parent=MS.gene063232.t1 |
chr1.3 | CDS | 25025500 | 25027461 | 25025500 | ID=cds.MS.gene063232.t1;Parent=MS.gene063232.t1 |
chr1.3 | exon | 25025274 | 25025411 | 25025274 | ID=MS.gene063232.t1.exon2;Parent=MS.gene063232.t1 |
chr1.3 | CDS | 25025274 | 25025411 | 25025274 | ID=cds.MS.gene063232.t1;Parent=MS.gene063232.t1 |
chr1.3 | exon | 25023803 | 25023874 | 25023803 | ID=MS.gene063232.t1.exon3;Parent=MS.gene063232.t1 |
chr1.3 | CDS | 25023803 | 25023874 | 25023803 | ID=cds.MS.gene063232.t1;Parent=MS.gene063232.t1 |
chr1.3 | exon | 25021802 | 25021843 | 25021802 | ID=MS.gene063232.t1.exon4;Parent=MS.gene063232.t1 |
chr1.3 | CDS | 25021802 | 25021843 | 25021802 | ID=cds.MS.gene063232.t1;Parent=MS.gene063232.t1 |
chr1.3 | exon | 25021566 | 25021652 | 25021566 | ID=MS.gene063232.t1.exon5;Parent=MS.gene063232.t1 |
chr1.3 | CDS | 25021566 | 25021652 | 25021566 | ID=cds.MS.gene063232.t1;Parent=MS.gene063232.t1 |
chr1.3 | exon | 25020253 | 25020360 | 25020253 | ID=MS.gene063232.t1.exon6;Parent=MS.gene063232.t1 |
chr1.3 | CDS | 25020253 | 25020360 | 25020253 | ID=cds.MS.gene063232.t1;Parent=MS.gene063232.t1 |
chr1.3 | exon | 25020030 | 25020122 | 25020030 | ID=MS.gene063232.t1.exon7;Parent=MS.gene063232.t1 |
chr1.3 | CDS | 25020030 | 25020122 | 25020030 | ID=cds.MS.gene063232.t1;Parent=MS.gene063232.t1 |
chr1.3 | exon | 25018981 | 25019060 | 25018981 | ID=MS.gene063232.t1.exon8;Parent=MS.gene063232.t1 |
chr1.3 | CDS | 25018981 | 25019060 | 25018981 | ID=cds.MS.gene063232.t1;Parent=MS.gene063232.t1 |
chr1.3 | exon | 25018161 | 25018893 | 25018161 | ID=MS.gene063232.t1.exon9;Parent=MS.gene063232.t1 |
chr1.3 | CDS | 25018161 | 25018893 | 25018161 | ID=cds.MS.gene063232.t1;Parent=MS.gene063232.t1 |
Gene Sequence |
Protein sequence |