Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053351.t1 | XP_013467067.1 | 86.4 | 1109 | 150 | 1 | 1 | 1108 | 1 | 1109 | 0.00E+00 | 1487.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053351.t1 | P26368 | 31.6 | 380 | 214 | 9 | 512 | 872 | 67 | 419 | 1.3e-34 | 150.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053351.t1 | A0A072VGZ7 | 86.4 | 1109 | 150 | 1 | 1 | 1108 | 1 | 1109 | 0.0e+00 | 1487.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049300 | MS.gene053351 | 0.801872 | 7.33E-49 | -1.69E-46 |
| MS.gene053351 | MS.gene063232 | 0.846009 | 2.84E-59 | -1.69E-46 |
| MS.gene053351 | MS.gene06422 | 0.80858 | 2.89E-50 | -1.69E-46 |
| MS.gene053351 | MS.gene06423 | 0.802466 | 5.54E-49 | -1.69E-46 |
| MS.gene053351 | MS.gene08963 | 0.806117 | 9.61E-50 | -1.69E-46 |
| MS.gene053351 | MS.gene30978 | 0.815027 | 1.14E-51 | -1.69E-46 |
| MS.gene053351 | MS.gene60935 | 0.802071 | 6.67E-49 | -1.69E-46 |
| MS.gene053351 | MS.gene65454 | 0.907235 | 6.31E-81 | -1.69E-46 |
| MS.gene053351 | MS.gene67168 | 0.953687 | 1.58E-111 | -1.69E-46 |
| MS.gene053351 | MS.gene90386 | 0.804992 | 1.66E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053351.t1 | MTR_1g041735 | 95.401 | 1109 | 50 | 1 | 1 | 1108 | 1 | 1109 | 0.0 | 2008 |
| MS.gene053351.t1 | MTR_1g041735 | 95.612 | 1071 | 46 | 1 | 39 | 1108 | 1 | 1071 | 0.0 | 1932 |
| MS.gene053351.t1 | MTR_1g041735 | 95.455 | 836 | 37 | 1 | 1 | 835 | 1 | 836 | 0.0 | 1489 |
| MS.gene053351.t1 | MTR_1g041735 | 95.475 | 663 | 30 | 0 | 446 | 1108 | 289 | 951 | 0.0 | 1274 |
| MS.gene053351.t1 | MTR_1g041735 | 92.308 | 338 | 26 | 0 | 39 | 376 | 1 | 338 | 5.12e-179 | 549 |
| MS.gene053351.t1 | MTR_3g005670 | 27.222 | 360 | 223 | 10 | 552 | 880 | 223 | 574 | 1.42e-31 | 132 |
| MS.gene053351.t1 | MTR_3g005670 | 27.933 | 358 | 225 | 10 | 552 | 880 | 223 | 576 | 1.50e-31 | 132 |
| MS.gene053351.t1 | MTR_3g005670 | 28.011 | 357 | 224 | 10 | 552 | 879 | 223 | 575 | 1.97e-31 | 132 |
| MS.gene053351.t1 | MTR_3g005670 | 27.298 | 359 | 222 | 10 | 552 | 879 | 223 | 573 | 2.57e-31 | 131 |
| MS.gene053351.t1 | MTR_3g005670 | 28.280 | 343 | 213 | 10 | 552 | 865 | 223 | 561 | 1.25e-30 | 129 |
| MS.gene053351.t1 | MTR_3g005670 | 27.933 | 358 | 225 | 10 | 552 | 880 | 223 | 576 | 7.96e-30 | 127 |
| MS.gene053351.t1 | MTR_3g005670 | 27.222 | 360 | 223 | 10 | 552 | 880 | 223 | 574 | 1.02e-29 | 126 |
| MS.gene053351.t1 | MTR_2g013130 | 27.978 | 361 | 209 | 11 | 564 | 886 | 116 | 463 | 1.29e-28 | 122 |
| MS.gene053351.t1 | MTR_4g031680 | 28.255 | 361 | 216 | 11 | 553 | 880 | 174 | 524 | 1.69e-28 | 122 |
| MS.gene053351.t1 | MTR_2g013130 | 26.650 | 394 | 221 | 13 | 532 | 886 | 114 | 478 | 1.54e-26 | 115 |
| MS.gene053351.t1 | MTR_2g013130 | 28.526 | 312 | 177 | 8 | 606 | 881 | 9 | 310 | 1.95e-26 | 112 |
| MS.gene053351.t1 | MTR_2g013130 | 28.931 | 318 | 178 | 9 | 606 | 886 | 52 | 358 | 1.74e-23 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053351.t1 | AT2G33435 | 49.773 | 440 | 206 | 7 | 440 | 873 | 710 | 1140 | 9.82e-123 | 409 |
| MS.gene053351.t1 | AT1G60900 | 27.119 | 354 | 203 | 9 | 606 | 933 | 249 | 573 | 6.52e-25 | 111 |
| MS.gene053351.t1 | AT4G36690 | 28.374 | 289 | 179 | 7 | 606 | 872 | 211 | 493 | 8.98e-25 | 110 |
| MS.gene053351.t1 | AT4G36690 | 28.374 | 289 | 179 | 7 | 606 | 872 | 233 | 515 | 9.57e-25 | 110 |
| MS.gene053351.t1 | AT4G36690 | 28.929 | 280 | 171 | 7 | 606 | 863 | 233 | 506 | 6.14e-23 | 105 |
| MS.gene053351.t1 | AT4G36690 | 28.674 | 279 | 171 | 7 | 606 | 862 | 233 | 505 | 2.76e-22 | 103 |
Find 226 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCCTTAATGTCCTTTC+TGG | 0.074338 | 1.4:+26380516 | None:intergenic |
| ATGGAGATTGCTGGTGTCTT+TGG | 0.211795 | 1.4:-26383807 | MS.gene053351:CDS |
| AGCAAATTCAACATAGTCTT+TGG | 0.212667 | 1.4:+26387454 | None:intergenic |
| TTTGATGGCAGTAAACTATT+TGG | 0.213603 | 1.4:-26387500 | MS.gene053351:CDS |
| CACGGGAATCGAAGAAATTT+TGG | 0.222977 | 1.4:-26381190 | MS.gene053351:CDS |
| TAAGATTCCATCCTTTAAAA+TGG | 0.236439 | 1.4:-26389371 | MS.gene053351:CDS |
| ACTCTAGCTCCTATTTCTTC+TGG | 0.240152 | 1.4:-26387981 | MS.gene053351:CDS |
| TCTTGACCGTCTCCTCTTCA+TGG | 0.255384 | 1.4:+26388694 | None:intergenic |
| TTATGATGTTTATAGATTCT+TGG | 0.260739 | 1.4:+26389391 | None:intergenic |
| TCAGCTGCTCTTTCCTTTGA+TGG | 0.264569 | 1.4:-26387515 | MS.gene053351:CDS |
| TTTGCAGGCATACCTTGTTT+GGG | 0.293827 | 1.4:+26385970 | None:intergenic |
| TCCACCTGTTCCTTTAGAAT+TGG | 0.321515 | 1.4:+26380888 | None:intergenic |
| AGCAGTGGCTTTGCATGCTC+TGG | 0.328489 | 1.4:+26382251 | None:intergenic |
| TTCTCTGGAGAATGCTTAGA+TGG | 0.340468 | 1.4:+26388047 | None:intergenic |
| CATCCAGCACGTTTCTTCTC+TGG | 0.343040 | 1.4:+26388032 | None:intergenic |
| ATAATCTCTTCAAAACTAAA+TGG | 0.343513 | 1.4:+26389526 | None:intergenic |
| AAACACGGTTCGTCCATTTC+AGG | 0.343902 | 1.4:-26380581 | MS.gene053351:CDS |
| AATTCAAAACCAGAAGAAAT+AGG | 0.349700 | 1.4:+26387972 | None:intergenic |
| ATTTAATCCAGCACTTGATT+TGG | 0.353132 | 1.4:+26389231 | None:intergenic |
| GGAAGTATTAACAGTTGTTC+AGG | 0.353180 | 1.4:-26382460 | MS.gene053351:CDS |
| GATAGTAAACCACCATCTTA+TGG | 0.353960 | 1.4:-26382278 | MS.gene053351:CDS |
| TGGTGTCTTTGGATCTTTGA+AGG | 0.354415 | 1.4:-26383796 | MS.gene053351:CDS |
| CCAGAAAAGCCCTCCTGAAA+TGG | 0.361049 | 1.4:+26380568 | None:intergenic |
| TCAAGATAAACCCTTCTCAT+AGG | 0.365121 | 1.4:+26387792 | None:intergenic |
| TGGTTCCAGAAAGGACATTA+AGG | 0.366182 | 1.4:-26380521 | MS.gene053351:CDS |
| GGAACCAACTAATTCTAAAC+TGG | 0.370521 | 1.4:+26380537 | None:intergenic |
| GTCGGGAGCGTGAGGATAGA+AGG | 0.371006 | 1.4:-26388313 | MS.gene053351:CDS |
| GCTTGCAGGTGCATAAAGAT+AGG | 0.374950 | 1.4:-26387577 | MS.gene053351:intron |
| AATTTCAAATCTCGTTTCTT+CGG | 0.377106 | 1.4:-26383987 | MS.gene053351:CDS |
| ATTATTGTCCTTGCAATGTC+TGG | 0.382246 | 1.4:+26381026 | None:intergenic |
| AGTGCTGGATTAAATAATAA+AGG | 0.387810 | 1.4:-26389223 | MS.gene053351:CDS |
| GCAGAGGGTAGAGCAAAATA+TGG | 0.393597 | 1.4:-26388902 | MS.gene053351:CDS |
| TGCCCTTGGTGAAAGAGAAC+GGG | 0.395787 | 1.4:+26388643 | None:intergenic |
| GTTGTCCAGCATGCATGATT+TGG | 0.407879 | 1.4:-26387934 | MS.gene053351:CDS |
| GAGTTGCTTGAAAATGTAAA+AGG | 0.412364 | 1.4:-26389484 | MS.gene053351:CDS |
| TGTAACTCTGGATCATCATT+AGG | 0.413072 | 1.4:+26380667 | None:intergenic |
| CAACTAATGGTTCAAGTAGA+AGG | 0.416034 | 1.4:-26388343 | MS.gene053351:CDS |
| TTTGAAGGCTTACCACTTTG+AGG | 0.418380 | 1.4:-26383781 | MS.gene053351:CDS |
| ACGAAAGATGATTTAATTGA+AGG | 0.421610 | 1.4:-26389283 | MS.gene053351:CDS |
| GACCGTCTCCTCTTCATGGT+TGG | 0.425429 | 1.4:+26388698 | None:intergenic |
| AGAGGGACGAAAGAAGTAAT+TGG | 0.426732 | 1.4:-26389594 | MS.gene053351:CDS |
| GCAAATTCAACATAGTCTTT+GGG | 0.428057 | 1.4:+26387455 | None:intergenic |
| CTCTGAGTCTATACAGAGAA+AGG | 0.429603 | 1.4:-26380345 | MS.gene053351:CDS |
| AATAACCTCTTGCTTTCTTC+CGG | 0.430687 | 1.4:-26387723 | MS.gene053351:CDS |
| TTAGTAACAGTGTGTGTGTC+TGG | 0.432948 | 1.4:+26380949 | None:intergenic |
| AGTAGCCCTGCTAGTGGACT+TGG | 0.433461 | 1.4:-26388122 | MS.gene053351:CDS |
| TTATTCCACGCTTCCTTAGC+AGG | 0.433488 | 1.4:+26389460 | None:intergenic |
| AGCTGCTGATCGACATGCTT+CGG | 0.433768 | 1.4:+26380423 | None:intergenic |
| TACTCCAATTCTAAAGGAAC+AGG | 0.435354 | 1.4:-26380892 | MS.gene053351:CDS |
| CATTCAAGGATGTCCTGATC+AGG | 0.436067 | 1.4:-26380698 | MS.gene053351:CDS |
| TATAATCATGTATTTGAAGA+AGG | 0.438748 | 1.4:-26380472 | MS.gene053351:CDS |
| GGCACATAGAAAGACTTATC+AGG | 0.444800 | 1.4:-26388267 | MS.gene053351:CDS |
| GGCCACATGAATTGATTTAA+CGG | 0.449065 | 1.4:+26381047 | None:intergenic |
| CAACTAATGGTTCAAGTAGA+AGG | 0.449247 | 1.4:-26388520 | MS.gene053351:CDS |
| GGATGGGATCTTCCTCCTGT+AGG | 0.450661 | 1.4:-26388014 | MS.gene053351:CDS |
| AAAGCTTGTGCGGGTTTGAA+TGG | 0.460255 | 1.4:-26382498 | MS.gene053351:CDS |
| CTTGCAGGTGCATAAAGATA+GGG | 0.463742 | 1.4:-26387576 | MS.gene053351:intron |
| CAAAGAGCCAACACAAGTAC+TGG | 0.466512 | 1.4:-26382228 | MS.gene053351:CDS |
| GATGCCAGTTTAGAATTAGT+TGG | 0.467941 | 1.4:-26380541 | MS.gene053351:CDS |
| TTGCCTAGTAGTACCATTCA+AGG | 0.469110 | 1.4:-26380712 | MS.gene053351:CDS |
| TTCTTCCTCTCATAAATGTG+TGG | 0.472735 | 1.4:+26388755 | None:intergenic |
| TCCCTCTCCTTCAAACAGTC+AGG | 0.473777 | 1.4:+26389610 | None:intergenic |
| GGGTTTGAATGGTATGAGCC+TGG | 0.474594 | 1.4:-26382487 | MS.gene053351:CDS |
| GATGGGATCTTCCTCCTGTA+GGG | 0.475215 | 1.4:-26388013 | MS.gene053351:CDS |
| TTGCATAGACGTCTCTTTGA+CGG | 0.476927 | 1.4:-26380394 | MS.gene053351:CDS |
| GAGCAGACCTGACTGTTTGA+AGG | 0.477729 | 1.4:-26389617 | MS.gene053351:CDS |
| TTAGGTGTATTCCCCTGATC+AGG | 0.484350 | 1.4:+26380685 | None:intergenic |
| ATATGGAAGAGAAATCAATA+AGG | 0.485629 | 1.4:-26388885 | MS.gene053351:CDS |
| CTGGATTAAATAATAAAGGC+TGG | 0.488033 | 1.4:-26389219 | MS.gene053351:CDS |
| ATGGTTGGTTCTTCATAATG+TGG | 0.491501 | 1.4:+26388713 | None:intergenic |
| GAATGTAAGTTCTAGAAAGA+AGG | 0.491771 | 1.4:-26389323 | MS.gene053351:CDS |
| AAATCTCGTTTCTTCGGAGA+TGG | 0.491853 | 1.4:-26383981 | MS.gene053351:intron |
| CAAGTAGAAGGTCAAGAAGT+CGG | 0.491913 | 1.4:-26388331 | MS.gene053351:CDS |
| GCAACTTCCACTGATCTCTC+TGG | 0.493226 | 1.4:+26386023 | None:intergenic |
| AAGTAGAAGGTCAAGAAGTC+GGG | 0.493814 | 1.4:-26388330 | MS.gene053351:CDS |
| TTAATCTCCAGTACTTGTGT+TGG | 0.494093 | 1.4:+26382221 | None:intergenic |
| CATCCTTGAATGGTACTACT+AGG | 0.494514 | 1.4:+26380709 | None:intergenic |
| ACATTTATGAGAGGAAGAAC+AGG | 0.495873 | 1.4:-26388751 | MS.gene053351:CDS |
| CGAAAGATGATTTAATTGAA+GGG | 0.497973 | 1.4:-26389282 | MS.gene053351:CDS |
| TTAGAAACCAAATCAAGTGC+TGG | 0.498284 | 1.4:-26389238 | MS.gene053351:CDS |
| GAGGAGACGGTCAAGAAGTC+GGG | 0.498705 | 1.4:-26388687 | MS.gene053351:CDS |
| TTGCAGGCATACCTTGTTTG+GGG | 0.500090 | 1.4:+26385971 | None:intergenic |
| TAAGTCTTTCTATGTGCCCT+TGG | 0.500562 | 1.4:+26388272 | None:intergenic |
| TAGCCACCAAGTCCACTAGC+AGG | 0.501332 | 1.4:+26388116 | None:intergenic |
| GGCTTACCACTTTGAGGCAA+GGG | 0.501487 | 1.4:-26383775 | MS.gene053351:CDS |
| CTGATGCATCCTCAGCTGTA+AGG | 0.502308 | 1.4:+26387534 | None:intergenic |
| CATGGCAAAGATAGACATGA+TGG | 0.505567 | 1.4:-26389010 | MS.gene053351:CDS |
| TTCTAAAGGAACAGGTGGAA+TGG | 0.507113 | 1.4:-26380884 | MS.gene053351:CDS |
| GAGGAAGAACAGGCAGGAAA+AGG | 0.507384 | 1.4:-26388741 | MS.gene053351:CDS |
| AGAGTAGGATCTGTCCCTAC+AGG | 0.512461 | 1.4:+26387999 | None:intergenic |
| GAAGAAAAGACAAGAGAAGA+GGG | 0.514626 | 1.4:-26389190 | MS.gene053351:CDS |
| TAAGTATTTCTGTTTGCCCT+TGG | 0.515292 | 1.4:+26388629 | None:intergenic |
| AACAGAAATACTTATCAAGA+TGG | 0.516221 | 1.4:-26388620 | MS.gene053351:CDS |
| GGTAGAGGCTTCACGATGGA+TGG | 0.524088 | 1.4:+26387891 | None:intergenic |
| CAAGATAAACCCTTCTCATA+GGG | 0.524873 | 1.4:+26387793 | None:intergenic |
| AGAGAAGAAACGTGCTGGAT+GGG | 0.525166 | 1.4:-26388030 | MS.gene053351:CDS |
| AGCCTCTGAGAAAGTTGTGA+TGG | 0.525404 | 1.4:-26387754 | MS.gene053351:CDS |
| AGAATTAGTTGGTTCCAGAA+AGG | 0.525428 | 1.4:-26380530 | MS.gene053351:CDS |
| GCTACTTACTCCAATTCTAA+AGG | 0.528933 | 1.4:-26380898 | MS.gene053351:CDS |
| GAATGGTATGAGCCTGGGAG+GGG | 0.529449 | 1.4:-26382481 | MS.gene053351:CDS |
| AGCCCTGCTAGTGGACTTGG+TGG | 0.529522 | 1.4:-26388119 | MS.gene053351:CDS |
| GATTCTCTTCCTCTTCATTG+TGG | 0.530005 | 1.4:+26389059 | None:intergenic |
| GGCGGGTAGCATGTGTCAGT+TGG | 0.535324 | 1.4:+26387814 | None:intergenic |
| TGATGCATGGCCGAGTTTGT+TGG | 0.536577 | 1.4:+26387688 | None:intergenic |
| GTTACTATCAAAGCTTGTGC+GGG | 0.537008 | 1.4:-26382507 | MS.gene053351:CDS |
| TCTTCCTCTCATAAATGTGT+GGG | 0.537581 | 1.4:+26388756 | None:intergenic |
| CAGAGAAGAAACGTGCTGGA+TGG | 0.538719 | 1.4:-26388031 | MS.gene053351:CDS |
| CATTAAGGAAGAAGATGAGG+AGG | 0.538929 | 1.4:-26380506 | MS.gene053351:CDS |
| TGAATCTAGTTTCTCTGAAG+AGG | 0.539721 | 1.4:-26380920 | MS.gene053351:CDS |
| TTGCCCTTGGTGAAAGAGAA+CGG | 0.541173 | 1.4:+26388642 | None:intergenic |
| TAAGGAATTCCACAAGCGCT+TGG | 0.541301 | 1.4:+26387552 | None:intergenic |
| GGACATTAAGGAAGAAGATG+AGG | 0.547317 | 1.4:-26380509 | MS.gene053351:CDS |
| GACCTGACTGTTTGAAGGAG+AGG | 0.547655 | 1.4:-26389612 | MS.gene053351:CDS |
| CTTACCACAGGTGATGCATC+AGG | 0.548034 | 1.4:+26382432 | None:intergenic |
| CACAGAAAAGCTTATCAAGA+TGG | 0.548916 | 1.4:-26388440 | MS.gene053351:CDS |
| ATTCAAGGATGTCCTGATCA+GGG | 0.549232 | 1.4:-26380697 | MS.gene053351:CDS |
| GTGGCTATTCACCAAGGAAG+AGG | 0.549747 | 1.4:-26388100 | MS.gene053351:CDS |
| CTGATCAGGACATCCTTGAA+TGG | 0.551575 | 1.4:+26380699 | None:intergenic |
| AGATAGGGGCCAAGCGCTTG+TGG | 0.552388 | 1.4:-26387561 | MS.gene053351:CDS |
| TCTCCAGAGAAGAAACGTGC+TGG | 0.557279 | 1.4:-26388035 | MS.gene053351:CDS |
| ATTGATGTTGAAAAGACAAT+GGG | 0.558472 | 1.4:-26380622 | MS.gene053351:CDS |
| AATGGAGAAACATGCTTCAG+AGG | 0.558614 | 1.4:-26389353 | MS.gene053351:CDS |
| ACCATGCTATCATGTAACTC+TGG | 0.559494 | 1.4:+26380655 | None:intergenic |
| ACTTTCTCAGAGGCTGAAGC+TGG | 0.559650 | 1.4:+26387762 | None:intergenic |
| GATTCAACAGTAATAGATGC+TGG | 0.559785 | 1.4:-26380745 | MS.gene053351:CDS |
| CTTCGAGCACTTTGTCACCA+TGG | 0.559910 | 1.4:+26380857 | None:intergenic |
| AGAGGAGACGGTCAAGAAGT+CGG | 0.560108 | 1.4:-26388688 | MS.gene053351:CDS |
| TGTGTTGGCTCTTTGAGCAG+TGG | 0.560118 | 1.4:+26382236 | None:intergenic |
| GTCAAGAAGTCGTGAACGCG+AGG | 0.561101 | 1.4:-26388498 | MS.gene053351:CDS |
| AACTACAACATCACTTATTG+TGG | 0.561162 | 1.4:+26385998 | None:intergenic |
| TCCAATTCTAAAGGAACAGG+TGG | 0.562370 | 1.4:-26380889 | MS.gene053351:CDS |
| AGCAGCCAAATCATGCATGC+TGG | 0.562459 | 1.4:+26387929 | None:intergenic |
| AAATAGTTTACTGCCATCAA+AGG | 0.563857 | 1.4:+26387502 | None:intergenic |
| ATGCTACCCGCCCTATGAGA+AGG | 0.563863 | 1.4:-26387803 | MS.gene053351:CDS |
| ATAATGAGCATTACACAGAA+AGG | 0.565395 | 1.4:-26389036 | MS.gene053351:CDS |
| TGTGTCTGGAGTAGGTTCTT+CGG | 0.567361 | 1.4:+26380963 | None:intergenic |
| AGGCTTACCACTTTGAGGCA+AGG | 0.569190 | 1.4:-26383776 | MS.gene053351:CDS |
| TCGAAATGATGATGAAACTC+AGG | 0.569530 | 1.4:-26388822 | MS.gene053351:CDS |
| GCCCCGTTCTCTTTCACCAA+GGG | 0.570207 | 1.4:-26388645 | MS.gene053351:CDS |
| CACGGTTCGTCCATTTCAGG+AGG | 0.571329 | 1.4:-26380578 | MS.gene053351:CDS |
| ATGATGATGAAACTCAGGAC+AGG | 0.573142 | 1.4:-26388817 | MS.gene053351:CDS |
| ATAAACCCTTCTCATAGGGC+GGG | 0.573510 | 1.4:+26387797 | None:intergenic |
| TGCTACCCGCCCTATGAGAA+GGG | 0.574243 | 1.4:-26387802 | MS.gene053351:CDS |
| GTCAAGAAGTCGGGAGCGTG+AGG | 0.575086 | 1.4:-26388321 | MS.gene053351:CDS |
| TGAATGGTATGAGCCTGGGA+GGG | 0.575492 | 1.4:-26382482 | MS.gene053351:CDS |
| GAAGAAGACAAAGATAATGA+TGG | 0.575789 | 1.4:-26380838 | MS.gene053351:CDS |
| TACTATGTCGATATCGTCGA+TGG | 0.575807 | 1.4:+26388141 | None:intergenic |
| GGTTTGAATGGTATGAGCCT+GGG | 0.578635 | 1.4:-26382486 | MS.gene053351:CDS |
| ACGTCTCTTTGACGGCAGAA+TGG | 0.580375 | 1.4:-26380386 | MS.gene053351:CDS |
| CTGACAGAGAAAGCATAGAC+AGG | 0.580633 | 1.4:+26388228 | None:intergenic |
| TGTAGTTGATTCCCCAAACA+AGG | 0.580898 | 1.4:-26385982 | MS.gene053351:intron |
| AAGAAGTAATTGGCGTTCTG+TGG | 0.581589 | 1.4:-26389584 | MS.gene053351:CDS |
| TCATGTGGCCAGACATTGCA+AGG | 0.582086 | 1.4:-26381034 | MS.gene053351:CDS |
| ATGAAGAACCAACCATGAAG+AGG | 0.585069 | 1.4:-26388706 | MS.gene053351:CDS |
| ACTGTCAGTCAGAGAAAGCA+TGG | 0.586818 | 1.4:+26388400 | None:intergenic |
| CTGTTAATACTTCCCCTCCC+AGG | 0.587392 | 1.4:+26382469 | None:intergenic |
| TGCTGACCCTTGCCTCAAAG+TGG | 0.589000 | 1.4:+26383769 | None:intergenic |
| ACCTGACTGTTTGAAGGAGA+GGG | 0.590195 | 1.4:-26389611 | MS.gene053351:CDS |
| AGCCCCGTTCTCTTTCACCA+AGG | 0.591951 | 1.4:-26388646 | MS.gene053351:CDS |
| AAATGTAAAAGGTCCTGCTA+AGG | 0.592273 | 1.4:-26389473 | MS.gene053351:CDS |
| TCTATCATCTTTATCTGACA+CGG | 0.592596 | 1.4:-26381208 | MS.gene053351:CDS |
| CTTACAATGCAGCTGATGCA+TGG | 0.593242 | 1.4:+26387675 | None:intergenic |
| TGCTCTGGAATGCCATAAGA+TGG | 0.593271 | 1.4:+26382266 | None:intergenic |
| ATGGCAAAGATAGACATGAT+GGG | 0.594996 | 1.4:-26389009 | MS.gene053351:CDS |
| AAGATACATCAAAATCTGAA+AGG | 0.595408 | 1.4:-26389099 | MS.gene053351:CDS |
| TCCAGAGTTACATGATAGCA+TGG | 0.595493 | 1.4:-26380656 | MS.gene053351:CDS |
| CTATCATCTTTATCTGACAC+GGG | 0.595544 | 1.4:-26381207 | MS.gene053351:CDS |
| TGGCAAAGATAGACATGATG+GGG | 0.596315 | 1.4:-26389008 | MS.gene053351:CDS |
| TGAAGAAAAGACAAGAGAAG+AGG | 0.599567 | 1.4:-26389191 | MS.gene053351:CDS |
| TTGAATGGTATGAGCCTGGG+AGG | 0.600077 | 1.4:-26382483 | MS.gene053351:CDS |
| ATGTGCCCTTGGTGAAAGAG+AGG | 0.600670 | 1.4:+26388283 | None:intergenic |
| AGAGATTCAGATAACAAGCA+TGG | 0.603533 | 1.4:-26389133 | MS.gene053351:CDS |
| TTTGAGGCAAGGGTCAGCAA+TGG | 0.603633 | 1.4:-26383765 | MS.gene053351:CDS |
| GACCGTTAAATCAATTCATG+TGG | 0.604281 | 1.4:-26381049 | MS.gene053351:CDS |
| ACAGTGTGTGTGTCTGGAGT+AGG | 0.604688 | 1.4:+26380955 | None:intergenic |
| AACCAACCATGAAGAGGAGA+CGG | 0.606604 | 1.4:-26388700 | MS.gene053351:CDS |
| CACAAGATGCTCTTGACATG+TGG | 0.608945 | 1.4:+26380771 | None:intergenic |
| GTCAAGAAGTCGGGATCATG+AGG | 0.609418 | 1.4:-26388678 | MS.gene053351:CDS |
| CGACATAGTAGCCCTGCTAG+TGG | 0.609672 | 1.4:-26388128 | MS.gene053351:CDS |
| GGAGAATGCTTAGATGGTGA+AGG | 0.610969 | 1.4:+26388053 | None:intergenic |
| TATTGATGTTGAAAAGACAA+TGG | 0.611873 | 1.4:-26380623 | MS.gene053351:CDS |
| GATAAACCCTTCTCATAGGG+CGG | 0.612497 | 1.4:+26387796 | None:intergenic |
| TGGTGAACCAGAGAGATCAG+TGG | 0.612628 | 1.4:-26386030 | MS.gene053351:CDS |
| TGTGGAATTCCTTACAGCTG+AGG | 0.612965 | 1.4:-26387543 | MS.gene053351:CDS |
| ACAGGTGGAATGGAGTTCCA+TGG | 0.613269 | 1.4:-26380874 | MS.gene053351:CDS |
| TGTTACTATCAAAGCTTGTG+CGG | 0.614885 | 1.4:-26382508 | MS.gene053351:CDS |
| TAAATCATCTTTCGTCACGA+TGG | 0.615304 | 1.4:+26389291 | None:intergenic |
| TGTGCCCTTGGTGAAAGAGA+GGG | 0.616915 | 1.4:+26388284 | None:intergenic |
| AAGACAAGAGAAGAGGGGCG+TGG | 0.617122 | 1.4:-26389184 | MS.gene053351:CDS |
| TTCAAGGATGTCCTGATCAG+GGG | 0.620193 | 1.4:-26380696 | MS.gene053351:CDS |
| AGATAAGCATATCCATGCAG+AGG | 0.625598 | 1.4:-26388918 | MS.gene053351:CDS |
| GTGCCCTTGGTGAAAGAGAG+GGG | 0.627220 | 1.4:+26388285 | None:intergenic |
| CATTACACAGAAAGGAAGCA+TGG | 0.627445 | 1.4:-26389028 | MS.gene053351:CDS |
| AGCCACCAAGTCCACTAGCA+GGG | 0.629194 | 1.4:+26388117 | None:intergenic |
| AAGGTCCTGCTAAGGAAGCG+TGG | 0.629212 | 1.4:-26389465 | MS.gene053351:CDS |
| GATAAGCATATCCATGCAGA+GGG | 0.630334 | 1.4:-26388917 | MS.gene053351:CDS |
| CATAGAAAGACTTATCAGGA+TGG | 0.632216 | 1.4:-26388263 | MS.gene053351:CDS |
| GCGTGGAATAAATCACCTGA+AGG | 0.633959 | 1.4:-26389448 | MS.gene053351:CDS |
| CAATACAGACTCAGAAAACA+CGG | 0.635402 | 1.4:-26380596 | MS.gene053351:CDS |
| ACTATCTGTCAGAGAAAGCA+CGG | 0.636048 | 1.4:+26388580 | None:intergenic |
| CTCAGGACAGGAATGCAATG+AGG | 0.637840 | 1.4:-26388805 | MS.gene053351:CDS |
| TTGTTGGATATGATTTACAC+CGG | 0.638547 | 1.4:+26387704 | None:intergenic |
| TTGCAGGTGCATAAAGATAG+GGG | 0.639374 | 1.4:-26387575 | MS.gene053351:intron |
| ACGGTTCGTCCATTTCAGGA+GGG | 0.639891 | 1.4:-26380577 | MS.gene053351:CDS |
| TTATGAGAGGAAGAACAGGC+AGG | 0.640101 | 1.4:-26388747 | MS.gene053351:CDS |
| GAAGAAATAGGAGCTAGAGT+AGG | 0.640117 | 1.4:+26387984 | None:intergenic |
| GTGAACGCGAGGATAGAAGA+AGG | 0.647217 | 1.4:-26388487 | MS.gene053351:CDS |
| GTAGGATCTGTCCCTACAGG+AGG | 0.648976 | 1.4:+26388002 | None:intergenic |
| TTACACCGGAAGAAAGCAAG+AGG | 0.652037 | 1.4:+26387718 | None:intergenic |
| GCCCTTGGTGAAAGAGAACG+GGG | 0.652802 | 1.4:+26388644 | None:intergenic |
| TGCCCTTGGTGAAAGAGAGG+GGG | 0.657952 | 1.4:+26388286 | None:intergenic |
| ATGTACGATTGGAATGTGCA+AGG | 0.660221 | 1.4:-26381164 | MS.gene053351:intron |
| GGCAAAGATAGACATGATGG+GGG | 0.664242 | 1.4:-26389007 | MS.gene053351:CDS |
| ATCCATCACAACTTTCTCAG+AGG | 0.669505 | 1.4:+26387752 | None:intergenic |
| TAAATCATATCCAACAAACT+CGG | 0.671795 | 1.4:-26387698 | MS.gene053351:CDS |
| ATAACCCACACATTTATGAG+AGG | 0.685858 | 1.4:-26388760 | MS.gene053351:CDS |
| GGGAGCGTGAGGATAGAAGG+AGG | 0.689194 | 1.4:-26388310 | MS.gene053351:CDS |
| CACTGGTAGAGGCTTCACGA+TGG | 0.692309 | 1.4:+26387887 | None:intergenic |
| TATGTCGATATCGTCGATGG+TGG | 0.693966 | 1.4:+26388144 | None:intergenic |
| GACTTGGTGGCTATTCACCA+AGG | 0.697367 | 1.4:-26388106 | MS.gene053351:CDS |
| AAGAAAAGACAAGAGAAGAG+GGG | 0.697944 | 1.4:-26389189 | MS.gene053351:CDS |
| TCTTGCGTACTCAACAAGAA+CGG | 0.698477 | 1.4:+26380447 | None:intergenic |
| TATGCCTGATGCATCACCTG+TGG | 0.720348 | 1.4:-26382436 | MS.gene053351:intron |
| GCAAAGATAGACATGATGGG+GGG | 0.730288 | 1.4:-26389006 | MS.gene053351:CDS |
| TTAATTTGAATAGTTCACAG+TGG | 0.736809 | 1.4:-26381235 | MS.gene053351:intron |
| TCTGGAATGCCATAAGATGG+TGG | 0.747907 | 1.4:+26382269 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 26380333 | 26389641 | 26380333 | ID=MS.gene053351 |
| chr1.4 | mRNA | 26380333 | 26389641 | 26380333 | ID=MS.gene053351.t1;Parent=MS.gene053351 |
| chr1.4 | exon | 26387680 | 26389641 | 26387680 | ID=MS.gene053351.t1.exon1;Parent=MS.gene053351.t1 |
| chr1.4 | CDS | 26387680 | 26389641 | 26387680 | ID=cds.MS.gene053351.t1;Parent=MS.gene053351.t1 |
| chr1.4 | exon | 26387454 | 26387591 | 26387454 | ID=MS.gene053351.t1.exon2;Parent=MS.gene053351.t1 |
| chr1.4 | CDS | 26387454 | 26387591 | 26387454 | ID=cds.MS.gene053351.t1;Parent=MS.gene053351.t1 |
| chr1.4 | exon | 26385983 | 26386054 | 26385983 | ID=MS.gene053351.t1.exon3;Parent=MS.gene053351.t1 |
| chr1.4 | CDS | 26385983 | 26386054 | 26385983 | ID=cds.MS.gene053351.t1;Parent=MS.gene053351.t1 |
| chr1.4 | exon | 26383982 | 26384023 | 26383982 | ID=MS.gene053351.t1.exon4;Parent=MS.gene053351.t1 |
| chr1.4 | CDS | 26383982 | 26384023 | 26383982 | ID=cds.MS.gene053351.t1;Parent=MS.gene053351.t1 |
| chr1.4 | exon | 26383746 | 26383832 | 26383746 | ID=MS.gene053351.t1.exon5;Parent=MS.gene053351.t1 |
| chr1.4 | CDS | 26383746 | 26383832 | 26383746 | ID=cds.MS.gene053351.t1;Parent=MS.gene053351.t1 |
| chr1.4 | exon | 26382437 | 26382544 | 26382437 | ID=MS.gene053351.t1.exon6;Parent=MS.gene053351.t1 |
| chr1.4 | CDS | 26382437 | 26382544 | 26382437 | ID=cds.MS.gene053351.t1;Parent=MS.gene053351.t1 |
| chr1.4 | exon | 26382214 | 26382306 | 26382214 | ID=MS.gene053351.t1.exon7;Parent=MS.gene053351.t1 |
| chr1.4 | CDS | 26382214 | 26382306 | 26382214 | ID=cds.MS.gene053351.t1;Parent=MS.gene053351.t1 |
| chr1.4 | exon | 26381165 | 26381244 | 26381165 | ID=MS.gene053351.t1.exon8;Parent=MS.gene053351.t1 |
| chr1.4 | CDS | 26381165 | 26381244 | 26381165 | ID=cds.MS.gene053351.t1;Parent=MS.gene053351.t1 |
| chr1.4 | exon | 26380333 | 26381077 | 26380333 | ID=MS.gene053351.t1.exon9;Parent=MS.gene053351.t1 |
| chr1.4 | CDS | 26380333 | 26381077 | 26380333 | ID=cds.MS.gene053351.t1;Parent=MS.gene053351.t1 |
| Gene Sequence |
| Protein sequence |
