AlfalfaGEDB | MS.gene063435

M. sativa cultivar XinJiangDaYe / MS.gene063435

KEGG: K17600
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063435.t1	XP_013463768.1	81.5	124	21	1	5	126	107	230	4.40E-43	184.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063435.t1	F4JT76	67.3	113	35	2	18	128	139	251	3.0e-32	140.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063435.t1	A0A072V8X8	81.5	124	21	1	5	126	107	230	3.2e-43	184.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene054236	MS.gene063435	0.806991	6.29E-50	-1.69E-46
MS.gene057915	MS.gene063435	0.802583	5.24E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063435.t1	MTR_2g047908	81.452	124	21	1	5	126	107	230	5.38e-56	192
MS.gene063435.t1	MTR_3g088380	96.825	63	2	0	120	182	156	218	4.59e-35	127

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063435.t1	AT4G19490	66.667	114	36	2	17	128	138	251	3.97e-40	147
MS.gene063435.t1	AT4G19490	66.667	114	36	2	17	128	138	251	3.97e-40	147
MS.gene063435.t1	AT1G21690	58.000	100	32	2	120	212	149	245	2.14e-28	110
MS.gene063435.t1	AT1G21690	58.000	100	32	2	120	212	144	240	2.77e-28	109
MS.gene063435.t1	AT1G21690	58.000	100	32	2	120	212	156	252	2.77e-28	110
MS.gene063435.t1	AT1G21690	58.000	100	32	2	120	212	156	252	4.03e-28	109

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Find 55 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGCAGCTGCTAAAGGAGC+AGG	0.563358	2.3:-25742299	MS.gene063435:intron
ACACGCGACGAGTGCTTCTC+CGG	0.464490	2.3:+25745123	None:intergenic
ACATCCTTTCTTGAGGGTAA+TGG	0.410918	2.3:-25742349	MS.gene063435:CDS
ACTTTAAGTAATATTTCTCA+AGG	0.547470	2.3:-25743000	MS.gene063435:CDS
AGAAGGCGCTACGTTCCGTG+CGG	0.742261	2.3:-25745053	MS.gene063435:CDS
AGCAGCTGCATTGTGGATAA+GGG	0.410436	2.3:+25742310	None:intergenic
AGCTGCATTGTGGATAAGGG+TGG	0.595003	2.3:+25742313	None:intergenic
AGGAATCTACCTTGATGCTG+AGG	0.617847	2.3:-25743148	MS.gene063435:intron
AGGTTCCTACCTCAGCATCA+AGG	0.596936	2.3:+25743139	None:intergenic
AGTAGAGCGAAGGAACTTCA+CGG	0.633504	2.3:+25745098	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTGAAGAAGGAAAAATG+TGG	+	chr2.3:25743028-25743047	None:intergenic	30.0%
AACAATACCTCTACAAACAA+TGG	+	chr2.3:25745365-25745384	None:intergenic	30.0%
AACTAAATTAGAGGTGGTAA+GGG	-	chr2.3:25743798-25743817	MS.gene063435:intron	30.0%
AACTGTTCGGTTGTTAATTT+AGG	-	chr2.3:25746291-25746310	MS.gene063435:intron	30.0%
ACCAAAATCCTATTATAGCA+AGG	+	chr2.3:25742224-25742243	None:intergenic	30.0%
ACCAAAGAGACATAAATTGA+AGG	+	chr2.3:25743672-25743691	None:intergenic	30.0%
ACCCTAATACTAAATAAAGC+GGG	+	chr2.3:25743830-25743849	None:intergenic	30.0%
ATAGAAGGCAATAAACTTTG+AGG	+	chr2.3:25742249-25742268	None:intergenic	30.0%
ATGACAAGTAAAGAACAGTT+TGG	-	chr2.3:25744323-25744342	MS.gene063435:intron	30.0%
ATTGAGAATAGGGAATACAT+TGG	-	chr2.3:25745137-25745156	MS.gene063435:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	25742146	25746312	25742146	ID=MS.gene063435
chr2.3	mRNA	25742146	25746312	25742146	ID=MS.gene063435.t1;Parent=MS.gene063435
chr2.3	exon	25746301	25746312	25746301	ID=MS.gene063435.t1.exon1;Parent=MS.gene063435.t1
chr2.3	CDS	25746301	25746312	25746301	ID=cds.MS.gene063435.t1;Parent=MS.gene063435.t1
chr2.3	exon	25744924	25745173	25744924	ID=MS.gene063435.t1.exon2;Parent=MS.gene063435.t1
chr2.3	CDS	25744924	25745173	25744924	ID=cds.MS.gene063435.t1;Parent=MS.gene063435.t1
chr2.3	exon	25743596	25743695	25743596	ID=MS.gene063435.t1.exon3;Parent=MS.gene063435.t1
chr2.3	CDS	25743596	25743695	25743596	ID=cds.MS.gene063435.t1;Parent=MS.gene063435.t1
chr2.3	exon	25743149	25743269	25743149	ID=MS.gene063435.t1.exon4;Parent=MS.gene063435.t1
chr2.3	CDS	25743149	25743269	25743149	ID=cds.MS.gene063435.t1;Parent=MS.gene063435.t1
chr2.3	exon	25742969	25743031	25742969	ID=MS.gene063435.t1.exon5;Parent=MS.gene063435.t1
chr2.3	CDS	25742969	25743031	25742969	ID=cds.MS.gene063435.t1;Parent=MS.gene063435.t1
chr2.3	exon	25742300	25742386	25742300	ID=MS.gene063435.t1.exon6;Parent=MS.gene063435.t1
chr2.3	CDS	25742300	25742386	25742300	ID=cds.MS.gene063435.t1;Parent=MS.gene063435.t1
chr2.3	exon	25742146	25742226	25742146	ID=MS.gene063435.t1.exon7;Parent=MS.gene063435.t1
chr2.3	CDS	25742146	25742226	25742146	ID=cds.MS.gene063435.t1;Parent=MS.gene063435.t1

Gene Sequence

>MS.gene063435

ATGATACAAGTGGTCAGTACTCTGTTAACTCAAGCTACAATGATACAAGGGTCTTTTAGGAGATAAGATACAAATCCTTGCTATAATAGGATTTTGGTCCCCTCAAAGTTTATTGCCTTCTATCGGCAAACCTAGGCTAGATAAGGTTCCATAAAAGGGAGAATTTAAGGGGTTATAGTCTTATTCAAGACATACCTAAATCGTCGACTTGTGAGTTATAGCTCCCTTCAAGAGTCGGTATGCAATCAATTTGTGGAAGAATATAATTCCCGTTTCGGAAATGGTTTTTGCAGTTAGACTTTTGGGGCCTTCAATCTTCATGCACTTTTTATGAGGGGAGGGCGTAAGCCCTTTTATGCATTCACTTATCGCTATTTAGCTTGGTGTGTTGTTACCTTTGTTTTACGAGTCTTTGCTCACGAGTGTTTCTGTGACACTTTTTAAAGATTTTTATTGAAGAAATTATTCTTTAAAAAAGTCAAAGATTTCGATTTGCAATGATATAAATACATAGATTTTGATAAAATCTTACAACTTTAGATGCTTAAAAAGATCCCTTGTTTTATTTTCACTACTACAAAATATAGATTTTACATCAATGGTGTTTAAGTTTTCACATCAGCACAAAAAAAATCTGAAGGGAAAGATATACACTATAAGTTTTTACATCAGTTGACATAAGCATCTGATGGAAATTCCTGATAGCATATAACATTTACATCAGTTGATAATTGAAATGAGGGGAAAAACACGCGGTGGCATTTTCGCAATTTGAGTGAAAACTTTGTCTAACTTTTTTCACATCAGTGGTGAGAGACTGCCTAATGGGAAAACAAGGTTTCACTTTTACCTTATCCCTTTCCCTATCGCAAAACAGATCCACATTTTTCCTTCTTCACTTTTTCACTCAGCCAAAAAACAACCGTGAAACCTCCAAAGCTCACCGTCAAAGCTAACCGTCCAAGCTCCAATCATGAATCTCCAACCACACCGTCCAAGTTCAATCAGTGGTTTCCTCTGGTAAGCTCTCTCTCTCTCTCTCTCTGACCTTTAAATCGTGAAATCCTAACCCATTTGTTGTTCAAAAAAAATTCGTGAAACCCTTACCTCTTTTCAATTCGTGAAACGCTAACAACGAGATCTCAACTATCTCCGACGACGGCGGTGCCGGAGAAGCACTCGTCGCGTGTCTCCGTGAAGTTCCTTCGCTCTACTTCAAACAAGATTTTCATCTCGAAGAAGGCGCTACGTTCCGTGCGGCGTGTCCGTTTTCGACTTTTGCTGAGAACGCGATTTTGCAGGAGAAGCTTTCGCAGTATCTTGATGTGGTTGAGCTTCATCTGGTTAAGGAGATCTCGTTGAGATCGTCGTCATTCTTTGAAGCGCAGGGTGAGTTGCAGGATCTTAATGGGTAGTTTAATACCTCAATAGTATAGTAGGATAATAAATAGTATGCTGCTAGGGAAAAATGGGTTAATTTTTGGTTGTTTTAGAGGCCAATTAAGGGCATATTTTAAAATGGCCCTTCAATTTATGTCTCTTTGGTTATTGTGGTGTTTGGTTTATGTACTTTTGAGATGTTTTTTGACCATTCATCTACTGTAATAGAAGTTAGCAGAAGGGAACTTATTTTTATTTCTTTGTGGTTGAACAACTAAATTAGAGGTGGTAAGGGATACCACCCGCTTTATTTAGTATTAGGGTAGTATCCTTTTGTTATTTTCATTTTGGGAATGTTGTAAGCATTCTTTGTTTTCTAATCCTTATAATCAGCCTTGGCTGGGGCCTGGGTGGAATATATCTTTGGTTGTTTTAGAAAGTGATTGTGTAAAGCTTCTTAATGAAATTTAAGTAATTTTACTAGTATTACTTGTTTGTGCCTTTTCTTTATACTATAATAATTGATGTTACTGTTACAATACCATCTGCATTTGTTTGGAGAAAAATTGATGAAAGTTTCATTTTGTTTTTTTGGTTGTTTAAAAAACAAAGCTTTGCAATATGGGCTGAAAGAATGATTCTTGACTTGGGATGTTGGGTCACACATGAAGTTGAAACGTAAATTTGGGCACACATTTTGGATCTGGTATTTTTGGGGGATCAAATTATAGGCCTAGTTGGATGAAGTGTCCCTAGGAAGTTTCTCAGTCAAACCATCTAAGACAAACCTAAAACAAATGACAAGTAAAGAACAGTTTGGAAGGATTAATATATTTAGAGATTGTTTTTGGTCGAAATAATATATTTAAAGAGTAAGGCACACAAATGTTTGGGGATCTTAGAAGCCCAATGTTTGTGCAGTGTAACAAGGCATGGAGTATAGATCCATGAGAGGATTATCTTCTCTCTTAAGTCTTGGTTAGAACTTAGAACTCATGTCAACTTCTGATTTAATTCAATAATCAGTAAGATACTGGATAAAAAAATATAGGTGAAATGTGTTTGTATTAAAGCACTAACAATGTACAACAGTATAGTTTCATGGCTTTATTAGCTTGTACAATAATACTGCACTATATCTAAAACTTCTGTGAAAATCACAAGAAAATTGGATTTGTTGCGGGTGATTCTGTGAAAATTCAGCCAGGTCCATTGTGACACTGCACAATTTAACTAGCACACCTTATTTACAATATACAGAATGAATTTTGTGCGAGGATTCGTGAATTGAAGGATACGGTGTGCGGAATGAATTTTGTATTCGTGAATTCAGCCAGGTCCATTGTGACACTGCAGAATGAATTTTGTGCACAATTTAACTAGCACACCATGTTTAAGATCAAATTTTAATTGATATACTTATTTACCATTGTTTTAATAAATTAAGTTTTTATTCTAGTTTCAGTTTTACATACTTTGTTTTTCTTATAGCAGCAAGAAAATTAAAATGTATGCACAAATATGAAATATCATGATCAATACAAAGGAAAATTATAAAGCTAAAACAATACTTTGTATAGTCTTTTTTCCTATTGTTCTTGTCAGCACTTTATTGAGAATAGGGAATACATTGGTTTTATACAAGATTGTCGTTTTTTTGTAGGATTATAGAACCACTTGCTTCAAGGTGTGCAAAATTCAGGTTCAAGCCACTGACAGAAGAAATCATGAGCAGCCGAATAGTATACATCTGCAAAGAAGAAGGAATCTACCTTGATGCTGAGGTAGGAACCTTAGAGCTTATATGGCGGCTGTGCTATTTTTAATGGTTTTGATCCATTGTTTGTAGAGGTATTGTTGACATCATAGCGGCTTATGTTTTAGTATATTTGCATTTGTAGGGGCTTTCAACTTTAAGTAATATTTCTCAAGGAGATCTTCGTTGGGCTATAACATACTTGCAGGTGAGCACATTTCCTTATCAACATAGTATGTCTTCAGACATGTAACATATGCTACTTCCTATTAAAAAAGTGTGTTGCTTCTAGTATGTCTTCAGATATGTAACATATGCTACATATGTATTTCACTTTTGAGTATTGCATCTATGTATCTCATTTTTATTTATTATTCTCACTAACCCAGTATTAACATTTTCAGTCTGCGGCTCGCTTATTTGGATCTTCCATTTCTTCCAAGGATCTGATTTCTGTGTCTGGGTAGGTTGTCAGACTAGTTCCTGTCGCCTGTTCTGTTTTTATATCAAAGTAAAAAATTGATATTCATTTTGAAGTTGTTTATGTCCATTTTTCTGTATGGTGTTTGCATGTCTGATGATGCACATTGCACTCTGACTTACTGATTGACATAATTATTAGCTGTATGGAAGGTGTGAGTTACCTGTTTGGCTTATCGTTATTGGAAATGATTTCTTTCCTGATTTTTAAAAATACTAAATACATGGATTAAAAGTTATTTTGTTGTTCATTGTAGTGTTCTACTTTGATATACAAGTTCACAAAATTGCAGCCTCTATGCCATTTCAGGAAACGTTGGATGCAACATCCTTTCTTGAGGGTAATGGAAATCCTCTGCTCCCACCCTTATCCACAATGCAGCTGCTAAAGGAGCAGGTACTACCTACAAACAATACAACACCTTTCTCCTCCTTTCCTCTCAACATTAAATAGTTTTGCTTTCTTGCAGTGTGCTTGGATGGAACATTACCTGGTTACTATCTGCATCGTGGATATGGATCAGGAGCAAACTGTTCGGTTGTTAATTTAG

Protein sequence

>MS.gene063435.t1

MIQVISTISDDGGAGEALVACLREVPSLYFKQDFHLEEGATFRAACPFSTFAENAILQEKLSQYLDVVELHLVKEISLRSSSFFEAQAHLIYNIQNEFCARIRELKDTVCGMNFVFVNSARIIEPLASRCAKFRFKPLTEEIMSSRIVYICKEEGIYLDAEGLSTLSNISQGDLRWAITYLQETLDATSFLEGNGNPLLPPLSTMQLLKEQCAWMEHYLVTICIVDMDQEQTVRLLI