AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054236


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054236.t1 MTR_3g109950 87.826 115 13 1 160 273 356 470 2.32e-59 196
MS.gene054236.t1 MTR_3g109950 48.879 223 72 5 1 217 126 312 2.25e-51 175
MS.gene054236.t1 MTR_3g109950 48.879 223 72 5 1 217 126 312 2.29e-51 174
MS.gene054236.t1 MTR_3g109950 87.500 88 10 1 160 246 356 443 4.36e-39 142
MS.gene054236.t1 MTR_3g109950 47.982 223 74 4 1 217 126 312 3.42e-51 173
MS.gene054236.t1 MTR_8g077830 65.217 115 39 1 160 273 355 469 2.28e-42 151
MS.gene054236.t1 MTR_8g077830 38.667 225 96 4 1 217 122 312 1.96e-40 145
MS.gene054236.t1 MTR_5g019950 37.220 223 99 5 1 218 129 315 6.45e-41 147
MS.gene054236.t1 MTR_5g019950 65.766 111 37 1 160 269 358 468 1.38e-34 130
MS.gene054236.t1 MTR_8g088080 64.035 114 40 1 160 272 363 476 2.41e-37 137
MS.gene054236.t1 MTR_8g088080 38.636 220 107 7 1 217 125 319 4.32e-35 131
MS.gene054236.t1 MTR_8g088070 64.602 113 39 1 160 271 358 470 1.49e-36 135
MS.gene054236.t1 MTR_8g088070 38.073 218 112 6 1 217 119 314 7.70e-34 128
MS.gene054236.t1 MTR_5g019970 66.019 103 35 0 167 269 6 108 1.74e-36 126
MS.gene054236.t1 MTR_1g026910 55.856 111 48 1 160 269 345 455 2.39e-34 129
MS.gene054236.t1 MTR_1g026910 43.094 181 87 5 1 179 106 272 3.42e-30 118
MS.gene054236.t1 MTR_7g103300 55.238 105 47 0 165 269 265 369 5.75e-33 124
MS.gene054236.t1 MTR_7g103300 40.828 169 80 6 1 167 20 170 7.09e-28 110
MS.gene054236.t1 MTR_7g103300 55.238 105 47 0 165 269 307 411 1.07e-32 124
MS.gene054236.t1 MTR_7g103300 40.828 169 80 6 1 167 62 212 1.27e-27 110
MS.gene054236.t1 MTR_7g103300 55.238 105 47 0 165 269 355 459 3.26e-32 123
MS.gene054236.t1 MTR_7g103300 40.828 169 80 6 1 167 110 260 1.60e-27 110
MS.gene054236.t1 MTR_1g026910 41.053 190 78 6 1 179 106 272 2.39e-30 118
MS.gene054236.t1 MTR_1g026910 56.818 88 37 1 160 246 345 432 5.93e-24 100
MS.gene054236.t1 MTR_1g061710 51.456 103 50 0 168 270 427 529 4.36e-28 112
MS.gene054236.t1 MTR_1g061710 37.870 169 89 4 1 168 111 264 1.55e-24 102
MS.gene054236.t1 MTR_7g103300 40.828 169 80 6 1 167 110 260 5.58e-28 110
MS.gene054236.t1 MTR_7g103300 40.828 169 80 6 1 167 110 260 6.86e-28 110
MS.gene054236.t1 MTR_7g103300 40.828 169 80 6 1 167 110 260 1.04e-27 110
MS.gene054236.t1 MTR_7g103300 56.044 91 40 0 165 255 355 445 2.70e-24 101
MS.gene054236.t1 MTR_3g110012 40.323 124 20 3 77 200 76 145 4.96e-15 70.9
MS.gene054236.t1 MTR_3g109980 40.323 124 20 3 77 200 76 145 4.96e-15 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054236.t1 AT2G25737 47.032 219 87 6 1 217 127 318 1.83e-47 162
MS.gene054236.t1 AT2G25737 75.439 114 27 1 160 272 362 475 2.75e-47 164
MS.gene054236.t1 AT2G25737 43.421 228 82 4 1 217 127 318 9.16e-47 162
MS.gene054236.t1 AT2G36630 48.571 105 54 0 165 269 352 456 1.63e-27 110
MS.gene054236.t1 AT2G36630 38.235 170 83 6 1 167 107 257 4.19e-26 106
MS.gene054236.t1 AT1G11540 53.125 64 29 1 1 63 19 82 3.60e-12 66.2
MS.gene054236.t1 AT1G11540 53.125 64 29 1 1 63 102 165 5.56e-12 65.9
MS.gene054236.t1 AT1G61740 48.438 64 32 1 1 63 106 169 4.90e-11 63.2

Find 61 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTGCCGATCATGAATATA+TGG 0.212904 6.1:-26651030 MS.gene054236:CDS
AATGTATATTGGAAGGAGTT+TGG 0.234623 6.1:-26652088 MS.gene054236:CDS
CTATTTGCTGAAACGATTTC+CGG 0.246931 6.1:-26652614 MS.gene054236:CDS
TGGTATAGTCGGTGGATTGC+TGG 0.276673 6.1:-26652861 MS.gene054236:intron
AGAAGGCTGATCATCCTATT+TGG 0.303986 6.1:-26651346 MS.gene054236:CDS
ACTCATTCCAGGAGGCTTCC+AGG 0.311492 6.1:-26652512 MS.gene054236:intron
TCGGTGGATTGCTGGGACTA+GGG 0.320262 6.1:-26652853 MS.gene054236:CDS
ATGTATATTGGAAGGAGTTT+GGG 0.321228 6.1:-26652087 MS.gene054236:CDS
AAACGATTTCCGGTTCCTTA+TGG 0.322506 6.1:-26652604 MS.gene054236:intron
GCCAATCATTGACTATGATT+TGG 0.335930 6.1:-26653182 MS.gene054236:CDS
TTATAATTGAAAATGTATAT+TGG 0.355167 6.1:-26652099 MS.gene054236:CDS
TCAACGTTGTATTTCCTGAT+TGG 0.361915 6.1:-26653108 MS.gene054236:CDS
CTCATCATCTTTATTCTAGC+TGG 0.396070 6.1:-26651313 MS.gene054236:CDS
ACCATTTGATTCTTGTCTCC+TGG 0.405561 6.1:+26652494 None:intergenic
AATATAGTGACAAGCCAATC+AGG 0.423808 6.1:+26653094 None:intergenic
GGTGACTACTATTGCAGCCT+TGG 0.425883 6.1:-26651386 MS.gene054236:CDS
TGAGAGATGCTCTTCCAAAT+AGG 0.430670 6.1:+26651332 None:intergenic
GCCAAATCATAGTCAATGAT+TGG 0.441902 6.1:+26653181 None:intergenic
TGGAGTTGACATTTCAAATA+CGG 0.473319 6.1:-26651060 MS.gene054236:CDS
ATTCAACCTATGTTAATGCT+TGG 0.473639 6.1:-26653151 MS.gene054236:CDS
ACTACTATTGCAGCCTTGGT+TGG 0.474031 6.1:-26651382 MS.gene054236:CDS
GTCGGTGGATTGCTGGGACT+AGG 0.483629 6.1:-26652854 MS.gene054236:CDS
CACAGCTCTTTACTTGAGCC+TGG 0.487045 6.1:-26651407 MS.gene054236:intron
TTTGTTTCAGGTATGGTCAT+GGG 0.488773 6.1:-26653262 None:intergenic
GTTTGTTTCAGGTATGGTCA+TGG 0.493247 6.1:-26653263 None:intergenic
GGTATAGTCGGTGGATTGCT+GGG 0.500421 6.1:-26652860 MS.gene054236:intron
ATTGCCGATCATGAATATAT+GGG 0.513117 6.1:-26651029 MS.gene054236:CDS
CGGCACAAACCATAAGGAAC+CGG 0.514574 6.1:+26652595 None:intergenic
AATTGAAAATGTATATTGGA+AGG 0.517889 6.1:-26652095 MS.gene054236:CDS
GGCAATCTGTAGTGCAAGGA+AGG 0.520451 6.1:+26652042 None:intergenic
TTAATGCTTGGAATCAGCAT+TGG 0.528414 6.1:-26653139 MS.gene054236:CDS
CGGTGGATTGCTGGGACTAG+GGG 0.528901 6.1:-26652852 MS.gene054236:CDS
TTTGAGAATATCTGCAAGTA+CGG 0.532267 6.1:-26651005 MS.gene054236:CDS
CTGATTCCAAGCATTAACAT+AGG 0.546907 6.1:+26653145 None:intergenic
CAACTGTCTACTACAACCTC+AGG 0.551520 6.1:-26653228 MS.gene054236:CDS
TTGAAACTCTCGATTGAGAA+GGG 0.551564 6.1:+26652789 None:intergenic
TGTCATTGCGAAAGTGGTTG+TGG 0.554558 6.1:+26651592 None:intergenic
CACAATATGTTGTCCAACCA+AGG 0.555321 6.1:+26651369 None:intergenic
TCCAGGAGACAAGAATCAAA+TGG 0.557287 6.1:-26652495 MS.gene054236:intron
CTCCTCGTCTATGTCTGTTG+TGG 0.560055 6.1:-26651567 MS.gene054236:CDS
GGAGAATGTCATTGCGAAAG+TGG 0.561309 6.1:+26651586 None:intergenic
TTGGGCTTCTACGATTTGTG+TGG 0.561318 6.1:-26652069 MS.gene054236:CDS
TTTATCAGTGCAATCTCACT+AGG 0.570312 6.1:-26651283 MS.gene054236:intron
GGAGAATGTCATTGCAAAAG+TGG 0.571321 6.1:+26652660 None:intergenic
AAATCCCATATATTCATGAT+CGG 0.571395 6.1:+26651025 None:intergenic
TGTCATTGCAAAAGTGGTCG+TGG 0.573149 6.1:+26652666 None:intergenic
TTTGAAACTCTCGATTGAGA+AGG 0.579927 6.1:+26652788 None:intergenic
GTCAATGATTGGCATATCCA+AGG 0.593318 6.1:+26653192 None:intergenic
CCTTGCACTACAGATTGCCA+AGG 0.600828 6.1:-26652038 MS.gene054236:intron
CAGGCTGAGACATCCTACCT+TGG 0.609778 6.1:-26653209 MS.gene054236:CDS
AGGCTGCAATAGTAGTCACC+AGG 0.612521 6.1:+26651389 None:intergenic
ATGATTGGCATATCCAAGGT+AGG 0.612586 6.1:+26653196 None:intergenic
CCTTGGCAATCTGTAGTGCA+AGG 0.614020 6.1:+26652038 None:intergenic
CGGAACGAACAATAAGGAAG+CGG 0.618097 6.1:+26651521 None:intergenic
GGTGGATTGCTGGGACTAGG+GGG 0.630581 6.1:-26652851 MS.gene054236:CDS
AGGTAGGATGTCTCAGCCTG+AGG 0.637706 6.1:+26653212 None:intergenic
CAATCGAGAGTTTCAAACTG+CGG 0.661783 6.1:-26652782 MS.gene054236:intron
GCTTGGAATCAGCATTGGAG+TGG 0.667172 6.1:-26653134 MS.gene054236:CDS
TTGGACAACATATTGTGAGA+AGG 0.670015 6.1:-26651363 MS.gene054236:CDS
TTCTACAACAGACATAGACG+AGG 0.746210 6.1:+26652639 None:intergenic
TTCCACAACAGACATAGACG+AGG 0.749880 6.1:+26651565 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACCAAATTATTATTAAATA+TGG + chr6.1:26651985-26652004 None:intergenic 10.0%
!! TTATAATTGAAAATGTATAT+TGG - chr6.1:26652149-26652168 MS.gene054236:intron 10.0%
!! TTCCATATTTAATAATAATT+TGG - chr6.1:26651980-26651999 MS.gene054236:intron 10.0%
!! AACGAATTATTATATCAATA+AGG + chr6.1:26652116-26652135 None:intergenic 15.0%
!! ATTAATTGAAAGTTATAAAC+TGG + chr6.1:26652270-26652289 None:intergenic 15.0%
!! TACTACATGATATATTAAAT+GGG + chr6.1:26651323-26651342 None:intergenic 15.0%
!!! CTTTATATTATATTCAGTTT+TGG - chr6.1:26652774-26652793 MS.gene054236:intron 15.0%
!! AATTGAAAATGTATATTGGA+AGG - chr6.1:26652153-26652172 MS.gene054236:intron 20.0%
!! ACAAACATTGTATCAATATA+TGG - chr6.1:26653134-26653153 MS.gene054236:CDS 20.0%
!! GTACTACATGATATATTAAA+TGG + chr6.1:26651324-26651343 None:intergenic 20.0%
! AAAACAAAATAAAGTTGACC+TGG - chr6.1:26651811-26651830 MS.gene054236:intron 25.0%
! AAATCCCATATATTCATGAT+CGG + chr6.1:26653226-26653245 None:intergenic 25.0%
! ATAAGAGTAAAAATATTCCG+AGG + chr6.1:26651229-26651248 None:intergenic 25.0%
! ATAATAATTCGTTCAATTGC+AGG - chr6.1:26652123-26652142 MS.gene054236:intron 25.0%
! GGCAGTTTAGATTAAAAAAA+TGG - chr6.1:26653101-26653120 MS.gene054236:CDS 25.0%
! TAAGGAAACCATAATGAAAA+AGG - chr6.1:26651296-26651315 MS.gene054236:CDS 25.0%
! TCACATTTCAAAAAGTTCAT+TGG + chr6.1:26652819-26652838 None:intergenic 25.0%
!! TTGCTTATTGTTCTTTTCTT+AGG - chr6.1:26651175-26651194 MS.gene054236:intron 25.0%
!!! CACTAATGATCTTTTTTCAA+TGG - chr6.1:26652026-26652045 MS.gene054236:intron 25.0%
!!! GAATATTTTTACTCTTATGC+AGG - chr6.1:26651231-26651250 MS.gene054236:intron 25.0%
!!! GGTCAACTTTATTTTGTTTT+TGG + chr6.1:26651811-26651830 None:intergenic 25.0%
!!! GTACAAGAGAGTATTATATT+GGG - chr6.1:26651945-26651964 MS.gene054236:intron 25.0%
!!! TACAAGAGAGTATTATATTG+GGG - chr6.1:26651946-26651965 MS.gene054236:intron 25.0%
!!! TTTTTTTCACTCATCTTGTT+AGG - chr6.1:26653165-26653184 MS.gene054236:CDS 25.0%
AAATGTAGAGATCTTGAAAC+TGG - chr6.1:26653080-26653099 MS.gene054236:CDS 30.0%
AATGTATATTGGAAGGAGTT+TGG - chr6.1:26652160-26652179 MS.gene054236:intron 30.0%
ACAACCCAAATCCAAAAAAT+GGG + chr6.1:26652999-26653018 None:intergenic 30.0%
ACAAGTAAATTTACCTCTTG+TGG - chr6.1:26652395-26652414 MS.gene054236:intron 30.0%
AGCATGATTCCTAATTGAAT+CGG - chr6.1:26652608-26652627 MS.gene054236:CDS 30.0%
AGTATGATTCCTAATTGGAT+CGG - chr6.1:26651534-26651553 MS.gene054236:CDS 30.0%
ATGTATATTGGAAGGAGTTT+GGG - chr6.1:26652161-26652180 MS.gene054236:intron 30.0%
ATTCAACCTATGTTAATGCT+TGG - chr6.1:26651097-26651116 MS.gene054236:intron 30.0%
ATTGCCGATCATGAATATAT+GGG - chr6.1:26653219-26653238 MS.gene054236:CDS 30.0%
CAACAAAAATGTCTAATTCC+TGG + chr6.1:26651204-26651223 None:intergenic 30.0%
TCTGACATCAGGAAAAATAA+TGG + chr6.1:26651838-26651857 None:intergenic 30.0%
TGGAGTTGACATTTCAAATA+CGG - chr6.1:26653188-26653207 MS.gene054236:CDS 30.0%
TGGTTAGTATGATTCCTAAT+TGG - chr6.1:26651529-26651548 MS.gene054236:intron 30.0%
TTGTCCTTCTAATCTAATGA+CGG + chr6.1:26652072-26652091 None:intergenic 30.0%
TTTGAGAATATCTGCAAGTA+CGG - chr6.1:26653243-26653262 MS.gene054236:CDS 30.0%
! CACTGTATTTTCACTATCTT+TGG - chr6.1:26651355-26651374 MS.gene054236:CDS 30.0%
! TCAATAAGGTGTCAATTTAG+TGG + chr6.1:26652102-26652121 None:intergenic 30.0%
!! AAATGGGACCTTTTTCATTA+TGG + chr6.1:26651307-26651326 None:intergenic 30.0%
!! ACAAGAGAGTATTATATTGG+GGG - chr6.1:26651947-26651966 MS.gene054236:intron 30.0%
!! CAACAAAGGCATTCTTTAAA+GGG - chr6.1:26651259-26651278 MS.gene054236:intron 30.0%
!! CGTACAAGAGAGTATTATAT+TGG - chr6.1:26651944-26651963 MS.gene054236:intron 30.0%
!! TCAACAAAGGCATTCTTTAA+AGG - chr6.1:26651258-26651277 MS.gene054236:intron 30.0%
!! TTAGTGTCACTTTGATCAAA+TGG + chr6.1:26652012-26652031 None:intergenic 30.0%
!!! AACCTATTTTAACTCATTCC+AGG - chr6.1:26651725-26651744 MS.gene054236:intron 30.0%
!!! ATTTCTTTTTGGTTAGGTTC+AGG - chr6.1:26651867-26651886 MS.gene054236:intron 30.0%
!!! CTTACCCATTTTTTGGATTT+GGG - chr6.1:26652992-26653011 MS.gene054236:intron 30.0%
!!! TGTTCGATTTCTTTTTGGTT+AGG - chr6.1:26651861-26651880 MS.gene054236:intron 30.0%
AACTCCGTCATTAGATTAGA+AGG - chr6.1:26652065-26652084 MS.gene054236:CDS 35.0%
AAGTAAGTTAGAAGCTATCG+CGG + chr6.1:26652750-26652769 None:intergenic 35.0%
AATATAGTGACAAGCCAATC+AGG + chr6.1:26651157-26651176 None:intergenic 35.0%
ACCAAATGTTCCCATTGAAA+AGG - chr6.1:26651914-26651933 MS.gene054236:intron 35.0%
ACGATTTACATACTGCAGAT+TGG + chr6.1:26652555-26652574 None:intergenic 35.0%
AGAAGACATCCGATTCAATT+AGG + chr6.1:26652620-26652639 None:intergenic 35.0%
ATCAGGAAAAATAATGGTCC+AGG + chr6.1:26651832-26651851 None:intergenic 35.0%
CACAACCCAAATCCAAAAAA+TGG + chr6.1:26653000-26653019 None:intergenic 35.0%
CGATTTACATACTGCAGATT+GGG + chr6.1:26652554-26652573 None:intergenic 35.0%
CTCATCATCTTTATTCTAGC+TGG - chr6.1:26652935-26652954 MS.gene054236:intron 35.0%
CTCCTGGAATGAGTTAAAAT+AGG + chr6.1:26651730-26651749 None:intergenic 35.0%
CTGATTCCAAGCATTAACAT+AGG + chr6.1:26651106-26651125 None:intergenic 35.0%
GAATATAAAGCTCTTCCAAC+TGG - chr6.1:26651891-26651910 MS.gene054236:intron 35.0%
GATTGCCGATCATGAATATA+TGG - chr6.1:26653218-26653237 MS.gene054236:CDS 35.0%
GCCAAATCATAGTCAATGAT+TGG + chr6.1:26651070-26651089 None:intergenic 35.0%
TACATGTTCTGCAGCATATT+GGG - chr6.1:26652359-26652378 MS.gene054236:intron 35.0%
TAGAAAGTTAGAAGCTATCG+CGG + chr6.1:26651676-26651695 None:intergenic 35.0%
TATCCTGATCATCAAACAGT+TGG - chr6.1:26651509-26651528 MS.gene054236:intron 35.0%
TCAACGTTGTATTTCCTGAT+TGG - chr6.1:26651140-26651159 MS.gene054236:intron 35.0%
TGATGATCAGGATAAGAGAA+GGG + chr6.1:26651503-26651522 None:intergenic 35.0%
TGCAGTTAGTCACATTTAGA+CGG - chr6.1:26653044-26653063 MS.gene054236:intron 35.0%
TTAATGCTTGGAATCAGCAT+TGG - chr6.1:26651109-26651128 MS.gene054236:intron 35.0%
TTGAAACTCTCGATTGAGAA+GGG + chr6.1:26651462-26651481 None:intergenic 35.0%
TTGGACAACATATTGTGAGA+AGG - chr6.1:26652885-26652904 MS.gene054236:intron 35.0%
TTTATCAGTGCAATCTCACT+AGG - chr6.1:26652965-26652984 MS.gene054236:intron 35.0%
! CTATTTGCTGAAACGATTTC+CGG - chr6.1:26651634-26651653 MS.gene054236:intron 35.0%
! GAGTGTGTTCGATTTCTTTT+TGG - chr6.1:26651856-26651875 MS.gene054236:intron 35.0%
! GCCAATCATTGACTATGATT+TGG - chr6.1:26651066-26651085 MS.gene054236:intron 35.0%
! TAACCAACTGTTTGATGATC+AGG + chr6.1:26651515-26651534 None:intergenic 35.0%
! TAGACATTTTTGTTGCTCCT+CGG - chr6.1:26651209-26651228 MS.gene054236:intron 35.0%
! TCCTTTTCAATGGGAACATT+TGG + chr6.1:26651918-26651937 None:intergenic 35.0%
! TGTTCTTTTCTTAGGTAACC+AGG - chr6.1:26651183-26651202 MS.gene054236:intron 35.0%
! TTGATGATCAGGATAAGAGA+AGG + chr6.1:26651504-26651523 None:intergenic 35.0%
! TTTGAAACTCTCGATTGAGA+AGG + chr6.1:26651463-26651482 None:intergenic 35.0%
! TTTTCACTCATCTTGTTAGG+TGG - chr6.1:26653168-26653187 MS.gene054236:CDS 35.0%
!! ACGTCGTTTTCCTTTTCAAT+GGG + chr6.1:26651927-26651946 None:intergenic 35.0%
!! TACGTCGTTTTCCTTTTCAA+TGG + chr6.1:26651928-26651947 None:intergenic 35.0%
!!! AGGTAAGCTTACCCATTTTT+TGG - chr6.1:26652985-26653004 MS.gene054236:intron 35.0%
!!! CTATTTTAACTCATTCCAGG+AGG - chr6.1:26651728-26651747 MS.gene054236:intron 35.0%
!!! GCTTACCCATTTTTTGGATT+TGG - chr6.1:26652991-26653010 MS.gene054236:intron 35.0%
AAACGATTTCCGGTTCCTTA+TGG - chr6.1:26651644-26651663 MS.gene054236:intron 40.0%
AAGAAAAGCGAAACCACAAG+AGG + chr6.1:26652411-26652430 None:intergenic 40.0%
ACCATTTGATTCTTGTCTCC+TGG + chr6.1:26651757-26651776 None:intergenic 40.0%
AGAAGACATCCGATCCAATT+AGG + chr6.1:26651546-26651565 None:intergenic 40.0%
AGAAGGCTGATCATCCTATT+TGG - chr6.1:26652902-26652921 MS.gene054236:intron 40.0%
ATGATTGGCATATCCAAGGT+AGG + chr6.1:26651055-26651074 None:intergenic 40.0%
CAATCGAGAGTTTCAAACTG+CGG - chr6.1:26651466-26651485 MS.gene054236:intron 40.0%
CACAATATGTTGTCCAACCA+AGG + chr6.1:26652882-26652901 None:intergenic 40.0%
CTACATGTTCTGCAGCATAT+TGG - chr6.1:26652358-26652377 MS.gene054236:intron 40.0%
GGAGAATGTCATTGCAAAAG+TGG + chr6.1:26651591-26651610 None:intergenic 40.0%
GTCAATGATTGGCATATCCA+AGG + chr6.1:26651059-26651078 None:intergenic 40.0%
TCCAGGAGACAAGAATCAAA+TGG - chr6.1:26651753-26651772 MS.gene054236:intron 40.0%
TGAGAGATGCTCTTCCAAAT+AGG + chr6.1:26652919-26652938 None:intergenic 40.0%
TGTGATGACAGAACAAACCT+TGG + chr6.1:26652230-26652249 None:intergenic 40.0%
TTATGCAGGCACATCAACAA+AGG - chr6.1:26651245-26651264 MS.gene054236:intron 40.0%
TTCTACAACAGACATAGACG+AGG + chr6.1:26651612-26651631 None:intergenic 40.0%
! TCTTTAAAGGGCTTGAGACA+TGG - chr6.1:26651271-26651290 MS.gene054236:intron 40.0%
! TTTCACTATCTTTGGTGTGC+TGG - chr6.1:26651363-26651382 MS.gene054236:CDS 40.0%
!! AGAGAGTATTATATTGGGGG+AGG - chr6.1:26651950-26651969 MS.gene054236:intron 40.0%
!! GAGAGTATTATATTGGGGGA+GGG - chr6.1:26651951-26651970 MS.gene054236:intron 40.0%
!!! GATCTTTTTTCAATGGTCCC+TGG - chr6.1:26652033-26652052 MS.gene054236:intron 40.0%
ACGGAGTTCAAATTCCTCCA+GGG + chr6.1:26652053-26652072 None:intergenic 45.0%
ACTACTATTGCAGCCTTGGT+TGG - chr6.1:26652866-26652885 MS.gene054236:intron 45.0%
AGGGCTTGAGACATGGAATA+AGG - chr6.1:26651278-26651297 MS.gene054236:intron 45.0%
ATCGAACACACTCTGACATC+AGG + chr6.1:26651849-26651868 None:intergenic 45.0%
ATGGGAACATTTGGTCCAGT+TGG + chr6.1:26651909-26651928 None:intergenic 45.0%
CAACTGTCTACTACAACCTC+AGG - chr6.1:26651020-26651039 MS.gene054236:CDS 45.0%
CGGAACGAACAATAAGGAAG+CGG + chr6.1:26652730-26652749 None:intergenic 45.0%
CTATCGCGGAACGAACAATA+AGG + chr6.1:26652736-26652755 None:intergenic 45.0%
CTGCAGAACATGTAGTTGTG+TGG + chr6.1:26652353-26652372 None:intergenic 45.0%
GAATCGGATGTCTTCTGTGT+AGG - chr6.1:26652624-26652643 MS.gene054236:CDS 45.0%
GGAGAATGTCATTGCGAAAG+TGG + chr6.1:26652665-26652684 None:intergenic 45.0%
TGTCATTGCAAAAGTGGTCG+TGG + chr6.1:26651585-26651604 None:intergenic 45.0%
TGTCATTGCGAAAGTGGTTG+TGG + chr6.1:26652659-26652678 None:intergenic 45.0%
TTCCACAACAGACATAGACG+AGG + chr6.1:26652686-26652705 None:intergenic 45.0%
TTGGGCTTCTACGATTTGTG+TGG - chr6.1:26652179-26652198 MS.gene054236:intron 45.0%
!! ACCCCTAGCTCTAGAAAAAG+CGG + chr6.1:26651439-26651458 None:intergenic 45.0%
!! ACTAGGGGGCAGATTTGTTA+TGG - chr6.1:26651411-26651430 MS.gene054236:intron 45.0%
!! CTAGGGGGCAGATTTGTTAT+GGG - chr6.1:26651412-26651431 MS.gene054236:intron 45.0%
!!! CTTTTTTCAATGGTCCCTGG+AGG - chr6.1:26652036-26652055 MS.gene054236:intron 45.0%
!!! GTCCGCTTTTTCTAGAGCTA+GGG - chr6.1:26651434-26651453 MS.gene054236:intron 45.0%
!!! TCCGCTTTTTCTAGAGCTAG+GGG - chr6.1:26651435-26651454 MS.gene054236:intron 45.0%
AGGCTGCAATAGTAGTCACC+AGG + chr6.1:26652862-26652881 None:intergenic 50.0%
CACAGCTCTTTACTTGAGCC+TGG - chr6.1:26652841-26652860 MS.gene054236:CDS 50.0%
CCTTGCACTACAGATTGCCA+AGG - chr6.1:26652210-26652229 MS.gene054236:intron 50.0%
CCTTGGCAATCTGTAGTGCA+AGG + chr6.1:26652213-26652232 None:intergenic 50.0%
CGGCACAAACCATAAGGAAC+CGG + chr6.1:26651656-26651675 None:intergenic 50.0%
CTATCGCGGCACAAACCATA+AGG + chr6.1:26651662-26651681 None:intergenic 50.0%
CTCCTCGTCTATGTCTGTTG+TGG - chr6.1:26651607-26651626 MS.gene054236:intron 50.0%
GACGGAGTTCAAATTCCTCC+AGG + chr6.1:26652054-26652073 None:intergenic 50.0%
GGATCGGATGTCTTCTTTGC+AGG - chr6.1:26651550-26651569 MS.gene054236:CDS 50.0%
GGCAATCTGTAGTGCAAGGA+AGG + chr6.1:26652209-26652228 None:intergenic 50.0%
GGTGACTACTATTGCAGCCT+TGG - chr6.1:26652862-26652881 MS.gene054236:intron 50.0%
! ACTATCTTTGGTGTGCTGGC+TGG - chr6.1:26651367-26651386 MS.gene054236:CDS 50.0%
! GCTTGGAATCAGCATTGGAG+TGG - chr6.1:26651114-26651133 MS.gene054236:intron 50.0%
!! GGTATAGTCGGTGGATTGCT+GGG - chr6.1:26651388-26651407 MS.gene054236:CDS 50.0%
!! TGGTATAGTCGGTGGATTGC+TGG - chr6.1:26651387-26651406 MS.gene054236:CDS 50.0%
!!! GGTCCGCTTTTTCTAGAGCT+AGG - chr6.1:26651433-26651452 MS.gene054236:intron 50.0%
ACTCATTCCAGGAGGCTTCC+AGG - chr6.1:26651736-26651755 MS.gene054236:intron 55.0%
AGGTAGGATGTCTCAGCCTG+AGG + chr6.1:26651039-26651058 None:intergenic 55.0%
CAGGCTGAGACATCCTACCT+TGG - chr6.1:26651039-26651058 MS.gene054236:CDS 55.0%
!! GGTGTGCTGGCTGGTATAGT+CGG - chr6.1:26651376-26651395 MS.gene054236:CDS 55.0%
!! TCGGTGGATTGCTGGGACTA+GGG - chr6.1:26651395-26651414 MS.gene054236:CDS 55.0%
CTTGTCTCCTGGAAGCCTCC+TGG + chr6.1:26651746-26651765 None:intergenic 60.0%
!! CGGTGGATTGCTGGGACTAG+GGG - chr6.1:26651396-26651415 MS.gene054236:CDS 60.0%
!! GGTGGATTGCTGGGACTAGG+GGG - chr6.1:26651397-26651416 MS.gene054236:CDS 60.0%
!! GTCGGTGGATTGCTGGGACT+AGG - chr6.1:26651394-26651413 MS.gene054236:CDS 60.0%
!! GTGCTGGCTGGTATAGTCGG+TGG - chr6.1:26651379-26651398 MS.gene054236:CDS 60.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 26650998 26653272 26650998 ID=MS.gene054236
chr6.1 mRNA 26650998 26653272 26650998 ID=MS.gene054236.t1;Parent=MS.gene054236
chr6.1 exon 26653074 26653272 26653074 ID=MS.gene054236.t1.exon1;Parent=MS.gene054236.t1
chr6.1 CDS 26653074 26653272 26653074 ID=cds.MS.gene054236.t1;Parent=MS.gene054236.t1
chr6.1 exon 26652783 26652875 26652783 ID=MS.gene054236.t1.exon2;Parent=MS.gene054236.t1
chr6.1 CDS 26652783 26652875 26652783 ID=cds.MS.gene054236.t1;Parent=MS.gene054236.t1
chr6.1 exon 26652605 26652698 26652605 ID=MS.gene054236.t1.exon3;Parent=MS.gene054236.t1
chr6.1 CDS 26652605 26652698 26652605 ID=cds.MS.gene054236.t1;Parent=MS.gene054236.t1
chr6.1 exon 26652496 26652523 26652496 ID=MS.gene054236.t1.exon4;Parent=MS.gene054236.t1
chr6.1 CDS 26652496 26652523 26652496 ID=cds.MS.gene054236.t1;Parent=MS.gene054236.t1
chr6.1 exon 26652039 26652125 26652039 ID=MS.gene054236.t1.exon5;Parent=MS.gene054236.t1
chr6.1 CDS 26652039 26652125 26652039 ID=cds.MS.gene054236.t1;Parent=MS.gene054236.t1
chr6.1 exon 26651531 26651624 26651531 ID=MS.gene054236.t1.exon6;Parent=MS.gene054236.t1
chr6.1 CDS 26651531 26651624 26651531 ID=cds.MS.gene054236.t1;Parent=MS.gene054236.t1
chr6.1 exon 26651284 26651424 26651284 ID=MS.gene054236.t1.exon7;Parent=MS.gene054236.t1
chr6.1 CDS 26651284 26651424 26651284 ID=cds.MS.gene054236.t1;Parent=MS.gene054236.t1
chr6.1 exon 26650998 26651083 26650998 ID=MS.gene054236.t1.exon8;Parent=MS.gene054236.t1
chr6.1 CDS 26650998 26651083 26650998 ID=cds.MS.gene054236.t1;Parent=MS.gene054236.t1
Gene Sequence

>MS.gene054236

ATGGTCATGGGTGCAGCTCTGTCAACTGTCTACTACAACCTCAGGCTGAGACATCCTACCTTGGATATGCCAATCATTGACTATGATTTGGCACTTCTCATTCAACCTATGTTAATGCTTGGAATCAGCATTGGAGTGGTCTTCAACGTTGTATTTCCTGATTGGCTTGTCACTATATTGCTTATTGTTCTTTTCTTAGGTAACCAGGAATTAGACATTTTTGTTGCTCCTCGGAATATTTTTACTCTTATGCAGGCACATCAACAAAGGCATTCTTTAAAGGGCTTGAGACATGGAATAAGGAAACCATAATGAAAAAGGTCCCATTTAATATATCATGTAGTACTATAATATTTTCACTGTATTTTCACTATCTTTGGTGTGCTGGCTGGTATAGTCGGTGGATTGCTGGGACTAGGGGGCAGATTTGTTATGGGTCCGCTTTTTCTAGAGCTAGGGGTCCCTTCTCAATCGAGAGTTTCAAACTGCGGTATATAAATCGCCCTTCTCTTATCCTGATCATCAAACAGTTGGTTAGTATGATTCCTAATTGGATCGGATGTCTTCTTTGCAGGTGTCAAGCGCCACGACCACTTTTGCAATGACATTCTCCTCGTCTATGTCTGTTGTAGAATACTATTTGCTGAAACGATTTCCGGTTCCTTATGGTTTGTGCCGCGATAGCTTCTAACTTTCTACTTTTTATAATTTTATTTCTAACTGTTTGAACCTATTTTAACTCATTCCAGGAGGCTTCCAGGAGACAAGAATCAAATGGTTAGTTCATAAAATATTCATTACTAACATTTACCAAAAACAAAATAAAGTTGACCTGGACCATTATTTTTCCTGATGTCAGAGTGTGTTCGATTTCTTTTTGGTTAGGTTCAGGAGAATATAAAGCTCTTCCAACTGGACCAAATGTTCCCATTGAAAAGGAAAACGACGTACAAGAGAGTATTATATTGGGGGAGGGTGATATTTCCATATTTAATAATAATTTGGTAATATCCATTTGATCAAAGTGACACTAATGATCTTTTTTCAATGGTCCCTGGAGGAATTTGAACTCCGTCATTAGATTAGAAGGACAAACTCTTACCACTAAATTGACACCTTATTGATATAATAATTCGTTCAATTGCAGGTGTTTATAATTGAAAATGTATATTGGAAGGAGTTTGGGCTTCTACGATTTGTGTGGATTTCCTTCCTTGCACTACAGATTGCCAAGGTTTGTTCTGTCATCACAGTTATTAATACATAATACCAGTTTATAACTTTCAATTAATCTAAGTCTCTTTTATTTTTTTTTTGACAAAATTAATCTAAGTCTCTTGTTAATAGCAAAACCACACAACTACATGTTCTGCAGCATATTGGGTACTGAACTTGTTACAAGTAAATTTACCTCTTGTGGTTTCGCTTTTCTTGATTGAACATGATATCTCATTGTCACTCAATTTTTATGAATTTATATTTGAATGTATGTTACAAGTTACAAAAATATCGAAAAAAGTTTGAATTATGTTTTACATGTTACATATGCAGATCCCAATCTGCAGTATGTAAATCGTGCTTCTCTTATCCTGATCATCAAACAGTTGGTTAGCATGATTCCTAATTGAATCGGATGTCTTCTGTGTAGGTGTCAAGCGCCACAACCACTTTCGCAATGACATTCTCCTCGTCTATGTCTGTTGTGGAATACTACTTGCTGAAACAATTTCCGCTTCCTTATTGTTCGTTCCGCGATAGCTTCTAACTTACTTTCTACTTTATATTATATTCAGTTTTGGACAATTGCATTGCTTCTGACCAATGAACTTTTTGAAATGTGACACACAGCTCTTTACTTGAGCCTGGTGACTACTATTGCAGCCTTGGTTGGACAACATATTGTGAGAAGGCTGATCATCCTATTTGGAAGAGCATCTCTCATCATCTTTATTCTAGCTGGCACAATATTTATCAGTGCAATCTCACTAGGTAAGCTTACCCATTTTTTGGATTTGGGTTGTGTGCAATCACAAACTCGTAATTGTATGCAGTTAGTCACATTTAGACGGCAGATTAAAATCTAAATGTAGAGATCTTGAAACTGGCAGTTTAGATTAAAAAAATGGAAATCTATACACAAACATTGTATCAATATATGGTGCACTCATTTTTTTCACTCATCTTGTTAGGTGGAGTTGACATTTCAAATACGGTGCACAAGATTGCCGATCATGAATATATGGGATTTGAGAATATCTGCAAGTACGGATCATAG

Protein sequence

>MS.gene054236.t1

MVMGAALSTVYYNLRLRHPTLDMPIIDYDLALLIQPMLMLGISIGVVFNVVFPDWLVTILLIVLFLVGGLLGLGGRFVMGPLFLELGVPSQSRVSNCGVKRHDHFCNDILLVYVCCRILFAETISGSLWRLPGDKNQMVFIIENVYWKEFGLLRFVWISFLALQIAKVSSATTTFAMTFSSSMSVVEYYLLKQFPLPYSLYLSLVTTIAALVGQHIVRRLIILFGRASLIIFILAGTIFISAISLGGVDISNTVHKIADHEYMGFENICKYGS