AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene063507

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063507.t1 MTR_5g080960 72.374 438 76 6 1 397 1 434 0.0 608
MS.gene063507.t1 MTR_5g080890 72.374 438 76 6 1 397 1 434 0.0 607
MS.gene063507.t1 MTR_8g096990 70.642 436 85 3 1 397 1 432 0.0 593
MS.gene063507.t1 MTR_8g038250 72.381 420 89 4 1 397 1 416 0.0 588
MS.gene063507.t1 MTR_8g038280 66.743 436 106 2 1 397 1 436 0.0 564
MS.gene063507.t1 MTR_5g044770 65.596 436 106 4 1 397 1 431 0.0 551
MS.gene063507.t1 MTR_6g090290 64.220 436 116 3 1 396 1 436 0.0 526
MS.gene063507.t1 MTR_8g038310 62.619 420 126 6 1 396 1 413 1.09e-178 504
MS.gene063507.t1 MTR_4g109760 62.385 436 88 7 1 397 1 399 1.65e-161 459
MS.gene063507.t1 MTR_3g028120 46.301 419 174 6 26 397 25 439 3.77e-123 363
MS.gene063507.t1 MTR_6g088760 47.826 414 164 7 1 367 1 409 2.84e-117 351
MS.gene063507.t1 MTR_5g038360 44.369 444 191 8 1 396 1 436 5.51e-116 345
MS.gene063507.t1 MTR_2g067830 46.715 411 168 6 32 396 1 406 3.72e-114 339
MS.gene063507.t1 MTR_5g044570 43.396 424 199 9 1 396 1 411 9.07e-110 328
MS.gene063507.t1 MTR_0024s0040 45.564 417 170 8 30 396 1 410 3.04e-107 322
MS.gene063507.t1 MTR_2g105300 44.118 408 155 7 32 393 1 381 9.77e-101 304
MS.gene063507.t1 MTR_0036s0070 40.091 439 196 10 10 396 3 426 8.03e-98 298
MS.gene063507.t1 MTR_0036s0050 39.551 445 199 10 10 396 3 435 1.56e-94 290
MS.gene063507.t1 MTR_0036s0110 38.462 455 208 10 1 396 1 442 1.95e-91 282
MS.gene063507.t1 MTR_5g008070 37.857 420 199 10 21 395 23 425 2.37e-78 248
MS.gene063507.t1 MTR_2g059490 41.061 358 160 8 86 397 59 411 1.53e-73 236
MS.gene063507.t1 MTR_2g059460 37.767 421 176 12 23 396 25 406 7.02e-71 228
MS.gene063507.t1 MTR_5g008150 36.730 422 184 12 22 396 27 412 3.79e-69 224
MS.gene063507.t1 MTR_1g060750 36.154 390 201 11 40 396 2 376 1.85e-67 218
MS.gene063507.t1 MTR_5g008110 34.783 437 199 12 5 396 20 415 4.21e-66 216
MS.gene063507.t1 MTR_3g097150 33.036 448 230 12 7 397 15 449 2.06e-63 210
MS.gene063507.t1 MTR_5g008090 39.175 291 159 9 114 396 34 314 1.71e-52 177
MS.gene063507.t1 MTR_6g088765 43.404 235 91 5 128 359 10 205 8.34e-48 162
MS.gene063507.t1 MTR_4g045857 35.625 320 124 10 2 276 6 288 2.27e-45 158
MS.gene063507.t1 MTR_1g039270 31.956 363 177 14 83 394 126 469 1.25e-36 139
MS.gene063507.t1 MTR_1g115210 30.206 437 229 17 16 394 68 486 2.94e-36 138
MS.gene063507.t1 MTR_2g028190 31.768 362 187 11 83 394 100 451 5.48e-36 137
MS.gene063507.t1 MTR_7g117430 29.812 426 222 14 28 394 77 484 2.53e-34 133
MS.gene063507.t1 MTR_3g046300 29.820 389 211 10 66 397 78 461 1.80e-32 127
MS.gene063507.t1 MTR_5g091130 30.491 387 202 11 71 397 177 556 2.59e-31 125
MS.gene063507.t1 MTR_4g007740 28.495 372 186 12 82 395 129 478 3.69e-30 121
MS.gene063507.t1 MTR_1g111350 30.252 357 186 12 83 394 129 467 9.67e-29 117
MS.gene063507.t1 MTR_3g053710 30.055 366 188 12 83 394 115 466 1.44e-28 116
MS.gene063507.t1 MTR_6g085010 29.830 352 187 12 86 394 157 491 1.10e-27 114
MS.gene063507.t1 MTR_4g008110 54.386 114 25 1 125 238 51 137 6.07e-25 99.4
MS.gene063507.t1 MTR_7g105850 26.562 448 228 20 38 396 32 467 4.60e-23 100
MS.gene063507.t1 MTR_2g070430 25.855 468 255 17 5 396 6 457 2.43e-22 98.6
MS.gene063507.t1 MTR_2g055840 26.178 382 205 12 77 394 5 373 1.73e-21 95.5
MS.gene063507.t1 MTR_3g053980 28.846 364 189 12 83 394 140 485 8.93e-19 88.2
MS.gene063507.t1 MTR_0945s0010 39.683 126 72 3 275 397 1 125 4.20e-18 81.3
MS.gene063507.t1 MTR_1g078240 26.371 383 193 16 83 395 67 430 1.40e-17 84.7
MS.gene063507.t1 MTR_7g080230 24.324 444 235 17 30 395 11 431 9.14e-17 82.0
MS.gene063507.t1 MTR_1g078240 27.013 385 189 17 83 395 67 431 9.57e-17 82.0
MS.gene063507.t1 MTR_2g063110 30.702 228 142 9 176 394 288 508 1.99e-15 78.2
MS.gene063507.t1 MTR_4g095270 24.317 366 207 13 84 397 79 426 8.32e-15 76.6
MS.gene063507.t1 MTR_4g095270 24.317 366 207 13 84 397 79 426 9.15e-15 76.3
MS.gene063507.t1 MTR_5g016260 21.957 419 243 17 33 397 46 434 1.36e-14 75.9
MS.gene063507.t1 MTR_5g016260 21.957 419 243 17 33 397 46 434 1.39e-14 75.9
MS.gene063507.t1 MTR_2g084550 26.178 382 193 15 84 395 76 438 1.98e-14 75.1
MS.gene063507.t1 MTR_5g012490 26.923 260 145 9 175 394 215 469 7.09e-14 73.6
MS.gene063507.t1 MTR_1g061940 26.053 380 197 16 84 395 82 445 1.16e-13 72.8
MS.gene063507.t1 MTR_4g100990 29.119 261 143 14 175 397 217 473 1.20e-13 72.8
MS.gene063507.t1 MTR_7g021510 23.377 385 208 16 81 395 67 434 2.14e-13 72.0
MS.gene063507.t1 MTR_2g037710 28.899 218 123 9 185 394 12 205 2.24e-13 69.3
MS.gene063507.t1 MTR_7g102750 26.190 378 199 18 83 395 79 441 5.63e-13 70.5
MS.gene063507.t1 MTR_1g037630 26.168 428 233 19 26 395 27 429 5.56e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063507.t1 AT1G64830 45.521 413 179 4 26 397 24 431 2.91e-113 338
MS.gene063507.t1 AT5G33340 46.973 413 172 5 27 397 30 437 2.04e-112 336
MS.gene063507.t1 AT2G35615 41.441 444 201 7 7 395 5 444 2.04e-96 295
MS.gene063507.t1 AT1G31450 40.181 443 203 8 5 395 10 442 7.87e-88 273
MS.gene063507.t1 AT2G28010 39.007 423 188 12 6 397 11 394 8.82e-79 248
MS.gene063507.t1 AT2G28040 37.972 424 190 12 6 397 11 393 4.86e-73 233
MS.gene063507.t1 AT2G28040 38.614 404 178 11 26 397 19 384 4.22e-72 231
MS.gene063507.t1 AT2G28030 41.854 356 163 10 73 397 48 390 1.06e-70 227
MS.gene063507.t1 AT2G28220 36.620 426 200 12 6 397 11 400 6.84e-68 220
MS.gene063507.t1 AT2G28225 38.997 359 173 9 73 397 54 400 4.59e-65 213
MS.gene063507.t1 AT2G03200 33.410 437 208 16 26 397 43 461 1.35e-55 190
MS.gene063507.t1 AT4G30030 32.796 372 187 13 71 394 63 419 2.98e-40 148
MS.gene063507.t1 AT2G23945 27.489 462 243 16 6 397 12 451 6.41e-39 145
MS.gene063507.t1 AT3G12700 30.733 423 224 17 30 395 51 461 1.82e-36 138
MS.gene063507.t1 AT1G01300 33.889 360 176 13 83 394 139 484 3.90e-35 135
MS.gene063507.t1 AT3G25700 28.505 428 219 15 39 395 39 450 2.26e-33 130
MS.gene063507.t1 AT1G25510 31.579 361 176 14 83 394 145 483 5.80e-33 129
MS.gene063507.t1 AT3G59080 31.844 358 200 14 71 397 155 499 4.38e-32 127
MS.gene063507.t1 AT3G61820 33.425 365 177 15 83 394 132 483 6.23e-32 126
MS.gene063507.t1 AT3G20015 28.160 451 227 16 15 394 46 470 1.31e-31 125
MS.gene063507.t1 AT3G18490 29.330 433 225 17 2 388 96 493 4.44e-31 124
MS.gene063507.t1 AT5G10770 29.680 438 227 14 22 395 54 474 1.37e-29 119
MS.gene063507.t1 AT2G42980 30.556 396 193 14 71 397 145 527 6.12e-29 118
MS.gene063507.t1 AT4G30040 28.767 438 209 22 28 389 17 427 1.19e-28 116
MS.gene063507.t1 AT1G79720 29.284 461 215 19 16 394 51 482 7.65e-28 115
MS.gene063507.t1 AT5G10760 30.467 407 211 15 31 394 87 464 2.85e-27 113
MS.gene063507.t1 AT3G59080 29.188 394 199 14 71 397 155 535 5.28e-27 112
MS.gene063507.t1 AT5G36260 28.947 380 181 17 84 395 76 434 1.13e-25 108
MS.gene063507.t1 AT1G09750 26.667 405 214 15 53 394 64 448 1.01e-21 97.1
MS.gene063507.t1 AT3G02740 26.632 383 202 15 73 395 77 440 7.32e-20 91.7
MS.gene063507.t1 AT1G65240 24.409 381 202 13 80 395 68 427 3.99e-18 86.3
MS.gene063507.t1 AT4G12920 25.581 387 202 13 62 394 33 387 2.00e-17 83.6
MS.gene063507.t1 AT4G33490 23.430 414 224 14 55 397 23 414 5.73e-17 82.8
MS.gene063507.t1 AT1G66180 24.211 380 200 16 85 397 71 429 1.15e-16 81.6
MS.gene063507.t1 AT5G37540 24.274 379 199 15 85 394 79 438 3.53e-16 80.5
MS.gene063507.t1 AT5G43100 24.185 368 204 15 84 397 74 420 1.12e-15 79.0
MS.gene063507.t1 AT5G43100 24.185 368 204 15 84 397 74 420 1.24e-15 79.3
MS.gene063507.t1 AT3G50050 24.796 367 205 13 84 397 91 439 1.48e-15 79.0
MS.gene063507.t1 AT1G05840 24.869 382 204 13 81 395 74 439 1.51e-15 78.6
MS.gene063507.t1 AT3G52500 25.380 461 225 22 34 395 28 468 2.64e-15 77.8
MS.gene063507.t1 AT3G54400 26.648 364 187 16 86 395 88 425 1.05e-14 75.9
MS.gene063507.t1 AT5G02190 23.499 383 188 16 95 394 82 442 7.29e-14 73.2
MS.gene063507.t1 AT5G24820 25.581 301 184 9 110 394 123 399 1.47e-13 72.0
MS.gene063507.t1 AT1G49050 23.393 389 212 18 79 396 197 570 2.96e-13 71.6
MS.gene063507.t1 AT5G22850 26.053 380 198 15 83 395 78 441 7.32e-13 70.5
MS.gene063507.t1 AT1G49050 23.642 313 194 13 113 396 101 397 8.63e-13 69.7

Find 79 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCGTTTGACTCACTGTTTA+AGG 0.161660 8.4:+17926816 None:intergenic
GGAAATGCTGCTGAGGTTTC+CGG 0.213900 8.4:-17926775 MS.gene063507:CDS
TCTCAAACTGGTGCCATCTT+TGG 0.229990 8.4:-17926358 MS.gene063507:CDS
GGATTGTAGAGTGGTGATTT+TGG 0.257821 8.4:+17927446 None:intergenic
GCAATACCATAAAATTTAAA+TGG 0.295214 8.4:+17927272 None:intergenic
GATAATACTGTGTCGTTTCA+TGG 0.321598 8.4:-17926949 MS.gene063507:CDS
ATGAGATACGCACCAGTATC+AGG 0.339411 8.4:+17927317 None:intergenic
CGTGTCTCTAATAACACAAT+TGG 0.344254 8.4:-17926890 MS.gene063507:CDS
GGAAACATCATAATTGATTC+AGG 0.355797 8.4:-17926625 MS.gene063507:CDS
AATGTCAAATAGTAGAAAAC+TGG 0.357495 8.4:+17926712 None:intergenic
CTCAAACTGGTGCCATCTTT+GGG 0.367501 8.4:-17926357 MS.gene063507:CDS
GAAGTTATTGGCGCGGTTGA+TGG 0.369229 8.4:+17927379 None:intergenic
TGGTAAATTCTCTTATTGTT+TGG 0.371059 8.4:-17926854 MS.gene063507:CDS
GGTAACAAAAGAGTAGAGTT+TGG 0.381657 8.4:-17926673 MS.gene063507:CDS
TGAATCAGCTGTGGCAGCTT+TGG 0.383282 8.4:-17926560 MS.gene063507:CDS
TGGTGCCATCTTTGGGAACT+TGG 0.386670 8.4:-17926350 MS.gene063507:CDS
CATAGGCCGAATGTTTGATT+AGG 0.389222 8.4:+17926514 None:intergenic
TCATTTCCTAAAACCGTGAT+TGG 0.394071 8.4:-17926982 MS.gene063507:CDS
ATACAGGTAGTGACATTGTT+TGG 0.395178 8.4:-17927247 MS.gene063507:CDS
GGAGATTCATTTCTCACTAT+AGG 0.395756 8.4:+17926733 None:intergenic
CCTAAAACCGTGATTGGTTG+TGG 0.397879 8.4:-17926976 MS.gene063507:CDS
TCCACTGTTATTCCTGATAC+TGG 0.399847 8.4:-17927329 MS.gene063507:CDS
TTAAAATGTGCGGTGATTAG+TGG 0.401338 8.4:+17926460 None:intergenic
TCAGGAATAACAGTGGATTC+AGG 0.406305 8.4:+17927335 None:intergenic
CTTGGCTCAACAAAATTTGT+TGG 0.415034 8.4:-17926332 MS.gene063507:CDS
TTGAGCCAAGTTCCCAAAGA+TGG 0.430537 8.4:+17926345 None:intergenic
TCTGGTATAGTTGGCCTTGG+AGG 0.436740 8.4:-17926919 MS.gene063507:CDS
GGTATAGTTGGCCTTGGAGG+TGG 0.436885 8.4:-17926916 MS.gene063507:CDS
TCGTTTCATGGCGCAAGCTC+TGG 0.439221 8.4:-17926937 MS.gene063507:CDS
GATTAAACTTAGGAGTGGTT+TGG 0.439457 8.4:+17927192 None:intergenic
AAAGAAAGAGAGGGTAAGAA+AGG 0.440054 8.4:+17927544 None:intergenic
ACACAATTGGGATCATCAAT+AGG 0.440252 8.4:-17926877 MS.gene063507:CDS
AGCTCTGGTATAGTTGGCCT+TGG 0.443123 8.4:-17926922 MS.gene063507:CDS
GCGACGAGCAAACTAAATTT+CGG 0.444525 8.4:-17926796 MS.gene063507:CDS
TGGTGGAGTACCAACTGAAT+AGG 0.444684 8.4:+17927292 None:intergenic
CTGTTTAAGGTAAGCAATAA+CGG 0.450913 8.4:+17926829 None:intergenic
GCTCAACAAAATTTGTTGGT+TGG 0.464745 8.4:-17926328 MS.gene063507:CDS
TGGATTCAGGTGTACTTGTC+AGG 0.472160 8.4:+17927348 None:intergenic
GATGATCCTAATCAAACATT+CGG 0.480032 8.4:-17926520 MS.gene063507:CDS
TCAAGATCGGTATAAACATA+AGG 0.491965 8.4:+17926580 None:intergenic
ACCTTTGTTCAAGTTGCTGA+TGG 0.493097 8.4:-17926406 MS.gene063507:CDS
TCATCAGAAGGTGGTGATGA+AGG 0.505181 8.4:-17926646 MS.gene063507:CDS
AGATGGCACCAGTTTGAGAT+GGG 0.507792 8.4:+17926362 None:intergenic
GGCGCAAGCTCTGGTATAGT+TGG 0.507923 8.4:-17926928 MS.gene063507:CDS
TGCTATAGTGTGACATCAGA+TGG 0.512462 8.4:-17926493 MS.gene063507:CDS
AACAATGTCACTACCTGTAT+CGG 0.531030 8.4:+17927250 None:intergenic
TAGTCTTGAGACTCTTACGT+TGG 0.531120 8.4:-17927028 MS.gene063507:CDS
GTGTCTCTAATAACACAATT+GGG 0.538676 8.4:-17926889 MS.gene063507:CDS
ATCAGTTCCACAACCAATCA+CGG 0.542873 8.4:+17926969 None:intergenic
AAGATGGCACCAGTTTGAGA+TGG 0.546493 8.4:+17926361 None:intergenic
ACATTGGAAGCATTTAGTGT+TGG 0.556371 8.4:-17926694 MS.gene063507:CDS
ACCATCAGCAACTTGAACAA+AGG 0.564974 8.4:+17926405 None:intergenic
CAATTGTGTTATTAGAGACA+CGG 0.570410 8.4:+17926891 None:intergenic
AAGTTCAACACTAAAACCAT+TGG 0.579518 8.4:+17927484 None:intergenic
ATACCATAAAATTTAAATGG+TGG 0.581758 8.4:+17927275 None:intergenic
CTTACGTTGGAATCCACCAC+TGG 0.585380 8.4:-17927015 MS.gene063507:CDS
AACAAAAGAGTAGAGTTTGG+AGG 0.585737 8.4:-17926670 MS.gene063507:CDS
TGGTTGTAACATTGTTCACA+AGG 0.591014 8.4:+17927212 None:intergenic
AGTTGACACAACACTATCAC+CGG 0.591688 8.4:+17926756 None:intergenic
ACAAAAGAGTAGAGTTTGGA+GGG 0.592954 8.4:-17926669 MS.gene063507:CDS
TGATGGATTAAACTTAGGAG+TGG 0.593505 8.4:+17927187 None:intergenic
AAATTTCGGAAATGCTGCTG+AGG 0.597017 8.4:-17926782 MS.gene063507:CDS
GAGACACGGGTCCACCTCCA+AGG 0.600079 8.4:+17926905 None:intergenic
GAGTTTGGAGGGTCATCAGA+AGG 0.601142 8.4:-17926658 MS.gene063507:CDS
TGAAACAGGAAGACCAGTGG+TGG 0.603675 8.4:+17927002 None:intergenic
TGCCACAGCTGATTCAAGAT+CGG 0.605369 8.4:+17926567 None:intergenic
TACACTTTAGTACAATCAGT+AGG 0.607700 8.4:+17926271 None:intergenic
ATCTGCACCTTTAAAATGTG+CGG 0.619507 8.4:+17926450 None:intergenic
AATTGTGTTATTAGAGACAC+GGG 0.620720 8.4:+17926892 None:intergenic
CTGATGTCACACTATAGCAT+AGG 0.623036 8.4:+17926497 None:intergenic
TACCGATCTTGAATCAGCTG+TGG 0.625075 8.4:-17926569 MS.gene063507:CDS
TATCTCATGACCTATTCAGT+TGG 0.630371 8.4:-17927302 MS.gene063507:CDS
AGATCGGTATAAACATAAGG+TGG 0.642421 8.4:+17926583 None:intergenic
GGCGATCAATCACATTCACA+AGG 0.664729 8.4:-17927057 MS.gene063507:CDS
CAATTGGGATCATCAATAGG+TGG 0.673677 8.4:-17926874 MS.gene063507:CDS
TTTGGAGGGTCATCAGAAGG+TGG 0.678751 8.4:-17926655 MS.gene063507:CDS
GATGGCACCAGTTTGAGATG+GGG 0.683431 8.4:+17926363 None:intergenic
ACCAGTATCAGGAATAACAG+TGG 0.728729 8.4:+17927328 None:intergenic
AAATGAAACAGGAAGACCAG+TGG 0.733802 8.4:+17926999 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACCATAAAATTTAAATGG+TGG + chr8.4:17926555-17926574 None:intergenic 20.0%
!! GCAATACCATAAAATTTAAA+TGG + chr8.4:17926558-17926577 None:intergenic 20.0%
!! TGTGAATATTCTATTAGTTA+TGG - chr8.4:17926749-17926768 MS.gene063507:CDS 20.0%
! AAAAAGAACTACTGGAATAA+AGG + chr8.4:17926311-17926330 None:intergenic 25.0%
! AATAAAGGAAAAAGAAAGAG+AGG + chr8.4:17926296-17926315 None:intergenic 25.0%
! AATGTCAAATAGTAGAAAAC+TGG + chr8.4:17927118-17927137 None:intergenic 25.0%
! ATAAAGGAAAAAGAAAGAGA+GGG + chr8.4:17926295-17926314 None:intergenic 25.0%
! TGGTAAATTCTCTTATTGTT+TGG - chr8.4:17926973-17926992 MS.gene063507:CDS 25.0%
!! ACTCCACCATTTAAATTTTA+TGG - chr8.4:17926549-17926568 MS.gene063507:CDS 25.0%
!! AGTTTTCTACTATTTGACAT+TGG - chr8.4:17927117-17927136 MS.gene063507:intron 25.0%
!!! GATTTTGATGGATTAAACTT+AGG + chr8.4:17926648-17926667 None:intergenic 25.0%
!!! TGTTGATATTTGTTTTGTGT+AGG + chr8.4:17926405-17926424 None:intergenic 25.0%
!!! TTGTAACTTGATGATTTTGA+TGG + chr8.4:17926660-17926679 None:intergenic 25.0%
AAGTTCAACACTAAAACCAT+TGG + chr8.4:17926346-17926365 None:intergenic 30.0%
GATGATCCTAATCAAACATT+CGG - chr8.4:17927307-17927326 MS.gene063507:CDS 30.0%
GTGTCTCTAATAACACAATT+GGG - chr8.4:17926938-17926957 MS.gene063507:CDS 30.0%
TACACTTTAGTACAATCAGT+AGG + chr8.4:17927559-17927578 None:intergenic 30.0%
TCAAGATCGGTATAAACATA+AGG + chr8.4:17927250-17927269 None:intergenic 30.0%
! AATTGTGTTATTAGAGACAC+GGG + chr8.4:17926938-17926957 None:intergenic 30.0%
! CAATTGTGTTATTAGAGACA+CGG + chr8.4:17926939-17926958 None:intergenic 30.0%
! CTGTTTAAGGTAAGCAATAA+CGG + chr8.4:17927001-17927020 None:intergenic 30.0%
! GGAAACATCATAATTGATTC+AGG - chr8.4:17927202-17927221 MS.gene063507:CDS 30.0%
!!! AATTTTTGAAGTTATTGGCG+CGG + chr8.4:17926458-17926477 None:intergenic 30.0%
!!! ACAACACGTTTTTTTGTTGA+AGG + chr8.4:17927531-17927550 None:intergenic 30.0%
!!! CAGGCAATTTTTGAAGTTAT+TGG + chr8.4:17926463-17926482 None:intergenic 30.0%
AAAGAAAGAGAGGGTAAGAA+AGG + chr8.4:17926286-17926305 None:intergenic 35.0%
AACAAAAGAGTAGAGTTTGG+AGG - chr8.4:17927157-17927176 MS.gene063507:intron 35.0%
AACAATGTCACTACCTGTAT+CGG + chr8.4:17926580-17926599 None:intergenic 35.0%
ACAAAAGAGTAGAGTTTGGA+GGG - chr8.4:17927158-17927177 MS.gene063507:intron 35.0%
ACACAATTGGGATCATCAAT+AGG - chr8.4:17926950-17926969 MS.gene063507:CDS 35.0%
AGATCGGTATAAACATAAGG+TGG + chr8.4:17927247-17927266 None:intergenic 35.0%
AGCATGAGAAAAAGAACTAC+TGG + chr8.4:17926319-17926338 None:intergenic 35.0%
ATACAGGTAGTGACATTGTT+TGG - chr8.4:17926580-17926599 MS.gene063507:CDS 35.0%
CGTGTCTCTAATAACACAAT+TGG - chr8.4:17926937-17926956 MS.gene063507:CDS 35.0%
CTTGGCTCAACAAAATTTGT+TGG - chr8.4:17927495-17927514 MS.gene063507:CDS 35.0%
GATTAAACTTAGGAGTGGTT+TGG + chr8.4:17926638-17926657 None:intergenic 35.0%
GGAGATTCATTTCTCACTAT+AGG + chr8.4:17927097-17927116 None:intergenic 35.0%
GGTAACAAAAGAGTAGAGTT+TGG - chr8.4:17927154-17927173 MS.gene063507:intron 35.0%
TATCTCATGACCTATTCAGT+TGG - chr8.4:17926525-17926544 MS.gene063507:CDS 35.0%
TCATTTCCTAAAACCGTGAT+TGG - chr8.4:17926845-17926864 MS.gene063507:CDS 35.0%
TGGTTGTAACATTGTTCACA+AGG + chr8.4:17926618-17926637 None:intergenic 35.0%
TTAAAATGTGCGGTGATTAG+TGG + chr8.4:17927370-17927389 None:intergenic 35.0%
! CTAATCACCGCACATTTTAA+AGG - chr8.4:17927370-17927389 MS.gene063507:CDS 35.0%
! TTTTATGGTATTGCCGATAC+AGG - chr8.4:17926564-17926583 MS.gene063507:CDS 35.0%
! TTTTCTCATGCTCTAACCAA+TGG - chr8.4:17926327-17926346 MS.gene063507:CDS 35.0%
! TTTTGTGTAGGATTGTAGAG+TGG + chr8.4:17926393-17926412 None:intergenic 35.0%
!! ACATTGGAAGCATTTAGTGT+TGG - chr8.4:17927133-17927152 MS.gene063507:intron 35.0%
!! ATCTGCACCTTTAAAATGTG+CGG + chr8.4:17927380-17927399 None:intergenic 35.0%
!! GATAATACTGTGTCGTTTCA+TGG - chr8.4:17926878-17926897 MS.gene063507:CDS 35.0%
!! GCTCAACAAAATTTGTTGGT+TGG - chr8.4:17927499-17927518 MS.gene063507:CDS 35.0%
!! TGATGGATTAAACTTAGGAG+TGG + chr8.4:17926643-17926662 None:intergenic 35.0%
!!! ACGGTTTTAGGAAATGAAAC+AGG + chr8.4:17926842-17926861 None:intergenic 35.0%
AAATGAAACAGGAAGACCAG+TGG + chr8.4:17926831-17926850 None:intergenic 40.0%
AAATTTCGGAAATGCTGCTG+AGG - chr8.4:17927045-17927064 MS.gene063507:CDS 40.0%
ACCAGTATCAGGAATAACAG+TGG + chr8.4:17926502-17926521 None:intergenic 40.0%
ACCATCAGCAACTTGAACAA+AGG + chr8.4:17927425-17927444 None:intergenic 40.0%
AGTTGACACAACACTATCAC+CGG + chr8.4:17927074-17927093 None:intergenic 40.0%
ATCAGTTCCACAACCAATCA+CGG + chr8.4:17926861-17926880 None:intergenic 40.0%
CAATTGGGATCATCAATAGG+TGG - chr8.4:17926953-17926972 MS.gene063507:CDS 40.0%
CATAGGCCGAATGTTTGATT+AGG + chr8.4:17927316-17927335 None:intergenic 40.0%
CTGATGTCACACTATAGCAT+AGG + chr8.4:17927333-17927352 None:intergenic 40.0%
GCGACGAGCAAACTAAATTT+CGG - chr8.4:17927031-17927050 MS.gene063507:CDS 40.0%
TCCACTGTTATTCCTGATAC+TGG - chr8.4:17926498-17926517 MS.gene063507:CDS 40.0%
TCTCTCTCACAGATTGACAT+AGG + chr8.4:17926704-17926723 None:intergenic 40.0%
TGACATAGGTTAGACGAACA+AGG + chr8.4:17926690-17926709 None:intergenic 40.0%
TGCTATAGTGTGACATCAGA+TGG - chr8.4:17927334-17927353 MS.gene063507:CDS 40.0%
! GGATTGTAGAGTGGTGATTT+TGG + chr8.4:17926384-17926403 None:intergenic 40.0%
! TAGTCTTGAGACTCTTACGT+TGG - chr8.4:17926799-17926818 MS.gene063507:CDS 40.0%
! TCAGGAATAACAGTGGATTC+AGG + chr8.4:17926495-17926514 None:intergenic 40.0%
!! ACCTTTGTTCAAGTTGCTGA+TGG - chr8.4:17927421-17927440 MS.gene063507:CDS 40.0%
AAGATGGCACCAGTTTGAGA+TGG + chr8.4:17927469-17927488 None:intergenic 45.0%
ATGAGATACGCACCAGTATC+AGG + chr8.4:17926513-17926532 None:intergenic 45.0%
CGCGTTTGACTCACTGTTTA+AGG + chr8.4:17927014-17927033 None:intergenic 45.0%
GGCGATCAATCACATTCACA+AGG - chr8.4:17926770-17926789 MS.gene063507:CDS 45.0%
TACCGATCTTGAATCAGCTG+TGG - chr8.4:17927258-17927277 MS.gene063507:CDS 45.0%
TGGATTCAGGTGTACTTGTC+AGG + chr8.4:17926482-17926501 None:intergenic 45.0%
TTGAGCCAAGTTCCCAAAGA+TGG + chr8.4:17927485-17927504 None:intergenic 45.0%
! AGATGGCACCAGTTTGAGAT+GGG + chr8.4:17927468-17927487 None:intergenic 45.0%
! CCACAACCAATCACGGTTTT+AGG + chr8.4:17926854-17926873 None:intergenic 45.0%
! CCTAAAACCGTGATTGGTTG+TGG - chr8.4:17926851-17926870 MS.gene063507:CDS 45.0%
! TCATCAGAAGGTGGTGATGA+AGG - chr8.4:17927181-17927200 MS.gene063507:intron 45.0%
! TGCCACAGCTGATTCAAGAT+CGG + chr8.4:17927263-17927282 None:intergenic 45.0%
! TGGTGGAGTACCAACTGAAT+AGG + chr8.4:17926538-17926557 None:intergenic 45.0%
!! CTCAAACTGGTGCCATCTTT+GGG - chr8.4:17927470-17927489 MS.gene063507:CDS 45.0%
!! TCTCAAACTGGTGCCATCTT+TGG - chr8.4:17927469-17927488 MS.gene063507:CDS 45.0%
CTTACGTTGGAATCCACCAC+TGG - chr8.4:17926812-17926831 MS.gene063507:CDS 50.0%
GAAGTTATTGGCGCGGTTGA+TGG + chr8.4:17926451-17926470 None:intergenic 50.0%
GAGTTTGGAGGGTCATCAGA+AGG - chr8.4:17927169-17927188 MS.gene063507:intron 50.0%
GGAAATGCTGCTGAGGTTTC+CGG - chr8.4:17927052-17927071 MS.gene063507:CDS 50.0%
TGAAACAGGAAGACCAGTGG+TGG + chr8.4:17926828-17926847 None:intergenic 50.0%
TGAATCAGCTGTGGCAGCTT+TGG - chr8.4:17927267-17927286 MS.gene063507:CDS 50.0%
TTTGGAGGGTCATCAGAAGG+TGG - chr8.4:17927172-17927191 MS.gene063507:intron 50.0%
! AGCTCTGGTATAGTTGGCCT+TGG - chr8.4:17926905-17926924 MS.gene063507:CDS 50.0%
! GATGGCACCAGTTTGAGATG+GGG + chr8.4:17927467-17927486 None:intergenic 50.0%
! GCTTTTGCCCCATCTCAAAC+TGG - chr8.4:17927457-17927476 MS.gene063507:CDS 50.0%
!! GTGGTGATTTTGGAGAGTCG+CGG + chr8.4:17926374-17926393 None:intergenic 50.0%
!! TCTGGTATAGTTGGCCTTGG+AGG - chr8.4:17926908-17926927 MS.gene063507:CDS 50.0%
!! TGGTGCCATCTTTGGGAACT+TGG - chr8.4:17927477-17927496 MS.gene063507:CDS 50.0%
TCGTTTCATGGCGCAAGCTC+TGG - chr8.4:17926890-17926909 MS.gene063507:CDS 55.0%
! GGCGCAAGCTCTGGTATAGT+TGG - chr8.4:17926899-17926918 MS.gene063507:CDS 55.0%
!! GGTATAGTTGGCCTTGGAGG+TGG - chr8.4:17926911-17926930 MS.gene063507:CDS 55.0%
!! GTGATTTTGGAGAGTCGCGG+TGG + chr8.4:17926371-17926390 None:intergenic 55.0%
GAGACACGGGTCCACCTCCA+AGG + chr8.4:17926925-17926944 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 17926270 17927579 17926270 ID=MS.gene063507
chr8.4 mRNA 17926270 17927579 17926270 ID=MS.gene063507.t1;Parent=MS.gene063507
chr8.4 exon 17927200 17927579 17927200 ID=MS.gene063507.t1.exon1;Parent=MS.gene063507.t1
chr8.4 CDS 17927200 17927579 17927200 ID=cds.MS.gene063507.t1;Parent=MS.gene063507.t1
chr8.4 exon 17926270 17927083 17926270 ID=MS.gene063507.t1.exon2;Parent=MS.gene063507.t1
chr8.4 CDS 17926270 17927083 17926270 ID=cds.MS.gene063507.t1;Parent=MS.gene063507.t1
Gene Sequence

>MS.gene063507

ATGAAAACACATTCCTTTCTTACCCTCTCTTTCTTTTTCCTTTATTCCAGTAGTTCTTTTTCTCATGCTCTAACCAATGGTTTTAGTGTTGAACTTATCCACCGCGACTCTCCAAAATCACCACTCTACAATCCTACACAAAACAAATATCAACATGTTATCAATGCAGCACGTCATTCCATCAACCGCGCCAATAACTTCAAAAATTGCCTGACAAGTACACCTGAATCCACTGTTATTCCTGATACTGGTGCGTATCTCATGACCTATTCAGTTGGTACTCCACCATTTAAATTTTATGGTATTGCCGATACAGGTAGTGACATTGTTTGGCTTCAATGTGAGCCTTGTGAACAATGTTACAACCAAACCACTCCTAAGTTTAATCCATCAAAATCATCAAGTTACAAAAATATTCCTTGTTCGTCTAACCTATGTCAATCTGTGAGAGAGATACTTCTTGCAATGATCAAAATTTTTGTGAATATTCTATTAGTTATGGCGATCAATCACATTCACAAGGCGATCTTAGTCTTGAGACTCTTACGTTGGAATCCACCACTGGTCTTCCTGTTTCATTTCCTAAAACCGTGATTGGTTGTGGAACTGATAATACTGTGTCGTTTCATGGCGCAAGCTCTGGTATAGTTGGCCTTGGAGGTGGACCCGTGTCTCTAATAACACAATTGGGATCATCAATAGGTGGTAAATTCTCTTATTGTTTGGCGCCGTTATTGCTTACCTTAAACAGTGAGTCAAACGCGACGAGCAAACTAAATTTCGGAAATGCTGCTGAGGTTTCCGGTGATAGTGTTGTGTCAACTCCTATAGTGAGAAATGAATCTCCAGTTTTCTACTATTTGACATTGGAAGCATTTAGTGTTGGTAACAAAAGAGTAGAGTTTGGAGGGTCATCAGAAGGTGGTGATGAAGGAAACATCATAATTGATTCAGGTACAACATTGACGATTTTACCACCTTATGTTTATACCGATCTTGAATCAGCTGTGGCAGCTTTGGTGAAACTAGAGCGTGTTGATGATCCTAATCAAACATTCGGCCTATGCTATAGTGTGACATCAGATGGATACGATTTTCCACTAATCACCGCACATTTTAAAGGTGCAGATGTTGAGTTGCATTCTATTAGTACCTTTGTTCAAGTTGCTGATGGTATTGTTTGCTTAGCTTTTGCCCCATCTCAAACTGGTGCCATCTTTGGGAACTTGGCTCAACAAAATTTGTTGGTTGGTTATGACCTTCAACAAAAAAACGTGTTGTTTAAGCCTACTGATTGTACTAAAGTGTAA
Protein sequence

>MS.gene063507.t1

MKTHSFLTLSFFFLYSSSSFSHALTNGFSVELIHRDSPKSPLYNPTQNKYQHVINAARHSINRANNFKNCLTSTPESTVIPDTGAYLMTYSVGTPPFKFYGIADTGSDIVWLQCEPCEQCYNQTTPNYGDQSHSQGDLSLETLTLESTTGLPVSFPKTVIGCGTDNTVSFHGASSGIVGLGGGPVSLITQLGSSIGGKFSYCLAPLLLTLNSESNATSKLNFGNAAEVSGDSVVSTPIVRNESPVFYYLTLEAFSVGNKRVEFGGSSEGGDEGNIIIDSGTTLTILPPYVYTDLESAVAALVKLERVDDPNQTFGLCYSVTSDGYDFPLITAHFKGADVELHSISTFVQVADGIVCLAFAPSQTGAIFGNLAQQNLLVGYDLQQKNVLFKPTDCTKV