AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene063941

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063941.t1 MTR_8g043650 93.839 211 13 0 1 211 1 211 3.75e-147 410
MS.gene063941.t1 MTR_1g105910 91.943 211 17 0 1 211 1 211 1.90e-144 403
MS.gene063941.t1 MTR_1g105920 90.047 211 21 0 1 211 1 211 2.79e-143 400
MS.gene063941.t1 MTR_2g030740 87.204 211 27 0 1 211 1 211 8.89e-138 386
MS.gene063941.t1 MTR_1g012570 88.626 211 24 0 1 211 1 211 1.66e-137 386
MS.gene063941.t1 MTR_3g052920 85.308 211 31 0 1 211 1 211 5.92e-135 379
MS.gene063941.t1 MTR_1g105905 84.021 194 31 0 18 211 1 194 3.89e-119 338
MS.gene063941.t1 MTR_3g052870 78.673 211 26 1 1 211 1 192 7.12e-117 333
MS.gene063941.t1 MTR_1g106070 86.264 182 25 0 1 182 1 182 2.20e-115 328
MS.gene063941.t1 MTR_3g030770 74.408 211 46 1 1 211 1 203 3.58e-111 319
MS.gene063941.t1 MTR_1g108510 74.408 211 46 1 1 211 1 203 1.64e-110 317
MS.gene063941.t1 MTR_1g108580 71.429 217 54 1 1 217 1 209 3.64e-107 308
MS.gene063941.t1 MTR_2g093190 72.986 211 49 1 1 211 1 203 2.05e-106 306
MS.gene063941.t1 MTR_0121s0080 71.905 210 59 0 1 210 1 210 5.53e-105 303
MS.gene063941.t1 MTR_1g077360 67.453 212 69 0 1 212 1 212 3.99e-103 299
MS.gene063941.t1 MTR_2g085280 66.038 212 72 0 1 212 1 212 8.00e-102 295
MS.gene063941.t1 MTR_1g075600 67.943 209 67 0 1 209 1 209 3.46e-101 294
MS.gene063941.t1 MTR_5g045560 67.773 211 68 0 1 211 1 211 3.86e-101 294
MS.gene063941.t1 MTR_2g085250 66.190 210 71 0 1 210 1 210 4.17e-101 293
MS.gene063941.t1 MTR_5g055100 65.403 211 73 0 1 211 1 211 1.17e-99 290
MS.gene063941.t1 MTR_5g053390 64.623 212 75 0 1 212 1 212 1.42e-95 280
MS.gene063941.t1 MTR_7g062350 61.137 211 81 1 3 212 14 224 1.84e-83 249
MS.gene063941.t1 MTR_1g075570 62.360 178 53 1 18 195 1 164 4.79e-68 207
MS.gene063941.t1 MTR_0121s0100 75.758 132 32 0 1 132 1 132 9.04e-67 202
MS.gene063941.t1 MTR_3g030780 71.970 132 37 0 1 132 1 132 7.44e-62 190
MS.gene063941.t1 MTR_3g080940 49.215 191 93 1 7 193 7 197 2.20e-61 192
MS.gene063941.t1 MTR_3g067910 66.019 103 35 0 21 123 2 104 7.36e-44 144
MS.gene063941.t1 MTR_2g105290 39.181 171 94 2 5 172 8 171 1.06e-38 132
MS.gene063941.t1 MTR_8g086290 40.964 166 88 2 5 167 8 166 2.03e-38 132
MS.gene063941.t1 MTR_7g028448 43.871 155 75 3 5 159 8 150 3.84e-32 115
MS.gene063941.t1 MTR_4g036915 43.871 155 75 3 5 159 8 150 3.84e-32 115
MS.gene063941.t1 MTR_4g127140 38.122 181 92 4 5 172 8 181 1.58e-29 109
MS.gene063941.t1 MTR_1g108500 62.887 97 15 1 22 118 110 185 3.75e-29 112
MS.gene063941.t1 MTR_3g067875 83.929 56 9 0 18 73 1 56 8.24e-27 99.0
MS.gene063941.t1 MTR_3g067915 48.936 94 48 0 33 126 3 96 3.18e-23 90.5
MS.gene063941.t1 MTR_3g067870 69.841 63 19 0 16 78 83 145 2.10e-22 90.1
MS.gene063941.t1 MTR_1g047550 59.420 69 28 0 9 77 2 70 5.91e-22 89.7
MS.gene063941.t1 MTR_8g079502 59.420 69 28 0 9 77 2 70 1.05e-21 89.0
MS.gene063941.t1 MTR_1g054265 42.735 117 63 2 9 125 2 114 1.36e-21 88.6
MS.gene063941.t1 MTR_4g131030 38.793 116 56 2 9 109 2 117 2.88e-21 88.6
MS.gene063941.t1 MTR_1g063160 44.643 112 57 3 9 118 2 110 3.18e-21 87.8
MS.gene063941.t1 MTR_8g051580 44.554 101 54 1 9 109 2 100 1.13e-20 86.3
MS.gene063941.t1 MTR_8g046350 37.692 130 73 2 9 135 2 126 1.43e-19 82.8
MS.gene063941.t1 MTR_4g094632 40.566 106 61 1 9 114 2 105 5.28e-19 81.3
MS.gene063941.t1 MTR_4g094638 41.509 106 61 1 9 113 2 107 5.00e-18 79.3
MS.gene063941.t1 MTR_1g053070 33.333 165 95 3 9 172 2 152 1.86e-17 79.3
MS.gene063941.t1 MTR_3g452380 42.453 106 51 1 3 108 11 106 2.29e-17 79.0
MS.gene063941.t1 MTR_4g102530 50.685 73 36 0 10 82 3 75 2.38e-17 78.2
MS.gene063941.t1 MTR_4g093970 57.576 66 28 0 10 75 29 94 2.47e-17 78.6
MS.gene063941.t1 MTR_3g005530 50.000 68 34 0 9 76 2 69 1.13e-16 76.6
MS.gene063941.t1 MTR_8g033270 51.471 68 33 0 9 76 2 69 2.42e-16 76.3
MS.gene063941.t1 MTR_3g102570 42.308 104 57 3 9 111 2 103 4.94e-16 76.3
MS.gene063941.t1 MTR_1g101970 50.000 68 34 0 9 76 2 69 7.71e-16 73.6
MS.gene063941.t1 MTR_8g087860 51.471 68 33 0 9 76 18 85 8.90e-16 74.3
MS.gene063941.t1 MTR_5g066180 50.000 68 34 0 9 76 2 69 1.01e-15 73.9
MS.gene063941.t1 MTR_5g032150 30.047 213 126 8 9 201 2 211 1.14e-15 73.9
MS.gene063941.t1 MTR_6g464720 49.275 69 34 1 9 76 2 70 1.21e-15 74.3
MS.gene063941.t1 MTR_5g032520 28.302 212 128 6 10 201 3 210 1.55e-15 73.6
MS.gene063941.t1 MTR_4g109830 47.826 69 35 1 9 76 2 70 2.36e-15 73.2
MS.gene063941.t1 MTR_2g017865 40.385 104 61 1 9 112 17 119 2.47e-15 73.6
MS.gene063941.t1 MTR_7g075870 38.182 110 66 1 10 119 3 110 2.81e-15 72.4
MS.gene063941.t1 MTR_8g033220 47.436 78 41 0 10 87 3 80 3.12e-15 72.8
MS.gene063941.t1 MTR_8g033220 47.436 78 41 0 10 87 3 80 3.36e-15 72.8
MS.gene063941.t1 MTR_2g009890 48.529 68 35 0 9 76 2 69 4.42e-15 73.2
MS.gene063941.t1 MTR_8g022970 32.903 155 89 4 8 155 17 163 5.21e-15 71.2
MS.gene063941.t1 MTR_3g437790 34.266 143 77 4 26 159 30 164 7.68e-15 70.9
MS.gene063941.t1 MTR_0003s0590 50.000 68 34 0 9 76 2 69 1.14e-14 71.6
MS.gene063941.t1 MTR_4g084740 46.053 76 39 2 9 83 2 76 2.17e-14 71.6
MS.gene063941.t1 MTR_8g066260 40.964 83 46 1 9 91 2 81 2.21e-14 70.5
MS.gene063941.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 3.17e-14 70.1
MS.gene063941.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 3.42e-14 70.1
MS.gene063941.t1 MTR_5g046870 47.826 69 35 1 9 76 2 70 3.69e-14 67.0
MS.gene063941.t1 MTR_7g075870 37.838 111 66 2 10 119 3 111 3.94e-14 69.3
MS.gene063941.t1 MTR_5g046790 45.070 71 36 1 9 79 2 69 4.31e-14 69.3
MS.gene063941.t1 MTR_2g461710 53.571 56 26 0 9 64 2 57 6.12e-14 65.1
MS.gene063941.t1 MTR_6g015975 46.377 69 36 1 9 76 2 70 1.88e-13 68.2
MS.gene063941.t1 MTR_7g016630 43.478 69 38 1 9 76 2 70 2.10e-13 68.2
MS.gene063941.t1 MTR_7g016600 46.377 69 36 1 9 76 2 70 2.43e-13 67.8
MS.gene063941.t1 MTR_1g038300 47.143 70 35 1 9 76 2 71 2.72e-13 67.4
MS.gene063941.t1 MTR_5g021270 47.143 70 35 1 9 76 2 71 2.84e-13 67.4
MS.gene063941.t1 MTR_5g021270 47.143 70 35 1 9 76 2 71 2.97e-13 67.4
MS.gene063941.t1 MTR_3g084980 47.826 69 35 1 9 76 2 70 6.17e-13 66.6
MS.gene063941.t1 MTR_8g097090 46.377 69 36 1 9 76 2 70 8.03e-13 66.2
MS.gene063941.t1 MTR_7g075850 45.714 70 36 1 9 76 2 71 8.38e-13 66.2
MS.gene063941.t1 MTR_1g029670 42.857 70 38 1 9 76 2 71 1.50e-12 64.3
MS.gene063941.t1 MTR_5g066960 47.368 57 30 0 9 65 2 58 1.68e-12 61.2
MS.gene063941.t1 MTR_4g051538 32.500 160 96 3 5 164 5 152 1.79e-12 65.1
MS.gene063941.t1 MTR_4g109810 50.000 56 28 0 9 64 2 57 3.43e-12 64.7
MS.gene063941.t1 MTR_3g088615 41.429 70 39 1 9 76 2 71 5.84e-12 62.8
MS.gene063941.t1 MTR_3g109930 30.000 140 82 3 27 159 20 150 6.57e-12 62.4
MS.gene063941.t1 MTR_3g113030 46.032 63 34 0 9 71 2 64 8.30e-12 63.2
MS.gene063941.t1 MTR_4g108720 27.841 176 105 9 9 172 2 167 9.45e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063941.t1 AT5G60440 53.723 188 80 3 5 189 3 186 7.21e-60 191
MS.gene063941.t1 AT2G24840 47.561 164 75 4 6 163 60 218 9.82e-41 140
MS.gene063941.t1 AT4G36590 46.296 162 81 2 5 160 3 164 9.28e-39 135
MS.gene063941.t1 AT1G01530 40.609 197 95 5 4 192 2 184 1.46e-37 132
MS.gene063941.t1 AT1G65360 39.153 189 108 3 5 192 3 185 6.63e-37 129
MS.gene063941.t1 AT2G34440 45.299 117 55 2 9 121 2 113 3.96e-26 100
MS.gene063941.t1 AT3G66656 41.985 131 71 2 9 134 2 132 1.95e-25 98.6
MS.gene063941.t1 AT3G04100 30.263 152 102 2 2 149 7 158 5.32e-22 90.5
MS.gene063941.t1 AT1G72350 35.374 147 62 4 9 155 43 156 4.65e-20 85.9
MS.gene063941.t1 AT1G28460 30.636 173 110 4 5 174 4 169 2.70e-18 80.1
MS.gene063941.t1 AT4G22950 49.351 77 39 0 10 86 3 79 4.94e-18 79.0
MS.gene063941.t1 AT4G09960 46.512 86 45 1 9 93 2 87 7.27e-18 79.7
MS.gene063941.t1 AT4G09960 46.512 86 45 1 9 93 2 87 7.92e-18 79.7
MS.gene063941.t1 AT4G09960 46.512 86 45 1 9 93 3 88 8.74e-18 79.7
MS.gene063941.t1 AT2G45650 52.941 68 32 0 9 76 2 69 9.72e-18 80.1
MS.gene063941.t1 AT4G09960 46.512 86 45 1 9 93 12 97 1.20e-17 79.7
MS.gene063941.t1 AT4G09960 46.512 86 45 1 9 93 28 113 1.79e-17 79.3
MS.gene063941.t1 AT4G22950 50.000 76 38 0 10 85 3 78 2.38e-17 78.2
MS.gene063941.t1 AT4G22950 50.000 76 38 0 10 85 3 78 2.38e-17 78.2
MS.gene063941.t1 AT4G09960 46.512 86 45 1 9 93 97 182 4.29e-17 79.3
MS.gene063941.t1 AT1G29962 29.070 172 115 4 5 169 4 175 1.53e-16 75.5
MS.gene063941.t1 AT4G18960 42.308 104 49 2 5 108 15 107 1.70e-16 76.6
MS.gene063941.t1 AT2G45660 50.000 68 34 0 10 77 3 70 2.33e-16 74.3
MS.gene063941.t1 AT3G61120 51.471 68 33 0 9 76 2 69 4.33e-16 75.5
MS.gene063941.t1 AT3G57230 47.059 68 36 0 9 76 2 69 6.81e-16 72.8
MS.gene063941.t1 AT2G22540 51.471 68 33 0 9 76 2 69 7.26e-16 74.7
MS.gene063941.t1 AT2G22540 51.471 68 33 0 9 76 2 69 7.26e-16 74.7
MS.gene063941.t1 AT2G45660 50.000 68 34 0 10 77 3 70 7.33e-16 74.3
MS.gene063941.t1 AT2G42830 50.704 71 35 0 6 76 14 84 8.08e-16 74.7
MS.gene063941.t1 AT2G42830 50.704 71 35 0 6 76 14 84 8.92e-16 74.7
MS.gene063941.t1 AT3G58780 50.704 71 35 0 6 76 14 84 9.10e-16 74.7
MS.gene063941.t1 AT3G58780 50.704 71 35 0 6 76 20 90 9.60e-16 74.7
MS.gene063941.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.23e-15 70.9
MS.gene063941.t1 AT3G58780 50.704 71 35 0 6 76 14 84 1.27e-15 74.7
MS.gene063941.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.83e-15 71.6
MS.gene063941.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.83e-15 71.6
MS.gene063941.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.83e-15 71.6
MS.gene063941.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.83e-15 71.6
MS.gene063941.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.83e-15 71.6
MS.gene063941.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.21e-15 71.6
MS.gene063941.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.21e-15 71.6
MS.gene063941.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.21e-15 71.6
MS.gene063941.t1 AT3G57230 47.059 68 36 0 9 76 2 69 2.41e-15 73.2
MS.gene063941.t1 AT3G57230 47.059 68 36 0 9 76 2 69 2.41e-15 73.2
MS.gene063941.t1 AT1G22130 36.190 105 66 1 9 112 2 106 3.76e-15 73.9
MS.gene063941.t1 AT5G13790 41.935 93 45 1 9 101 2 85 4.03e-15 73.2
MS.gene063941.t1 AT4G24540 50.000 68 34 0 9 76 2 69 4.51e-15 72.0
MS.gene063941.t1 AT1G77950 46.053 76 39 2 9 83 2 76 5.36e-15 72.4
MS.gene063941.t1 AT1G77950 46.053 76 39 2 9 83 2 76 5.36e-15 72.4
MS.gene063941.t1 AT1G77950 46.053 76 39 2 9 83 2 76 5.36e-15 72.4
MS.gene063941.t1 AT1G77950 46.053 76 39 2 9 83 2 76 5.36e-15 72.4
MS.gene063941.t1 AT5G51870 50.746 67 33 0 10 76 3 69 5.46e-15 70.9
MS.gene063941.t1 AT4G11880 48.611 72 36 1 10 80 3 74 5.90e-15 70.9
MS.gene063941.t1 AT4G11880 48.611 72 36 1 10 80 3 74 5.90e-15 70.9
MS.gene063941.t1 AT3G57390 48.529 68 35 0 9 76 2 69 6.35e-15 72.0
MS.gene063941.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.90e-15 71.2
MS.gene063941.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.90e-15 71.2
MS.gene063941.t1 AT1G77980 37.143 105 65 1 9 112 2 106 7.14e-15 73.2
MS.gene063941.t1 AT5G13790 50.000 68 34 0 9 76 2 69 7.58e-15 72.4
MS.gene063941.t1 AT5G51870 50.746 67 33 0 10 76 3 69 7.64e-15 71.2
MS.gene063941.t1 AT5G62165 49.254 67 34 0 10 76 3 69 7.71e-15 71.2
MS.gene063941.t1 AT5G62165 49.254 67 34 0 10 76 3 69 7.71e-15 71.2
MS.gene063941.t1 AT5G62165 49.254 67 34 0 10 76 3 69 7.71e-15 71.2
MS.gene063941.t1 AT5G51870 47.222 72 38 0 5 76 21 92 8.15e-15 70.9
MS.gene063941.t1 AT1G17310 35.119 168 68 5 8 170 47 178 8.56e-15 71.2
MS.gene063941.t1 AT1G69120 43.373 83 44 1 9 91 2 81 9.16e-15 71.6
MS.gene063941.t1 AT1G17310 35.119 168 68 5 8 170 58 189 9.85e-15 71.2
MS.gene063941.t1 AT3G57390 48.529 68 35 0 9 76 2 69 9.87e-15 72.0
MS.gene063941.t1 AT5G60910 49.296 71 33 1 9 79 2 69 1.08e-14 71.6
MS.gene063941.t1 AT1G26310 47.826 69 35 1 9 76 2 70 1.23e-14 71.6
MS.gene063941.t1 AT5G51860 50.746 67 33 0 10 76 3 69 1.25e-14 70.5
MS.gene063941.t1 AT4G11880 48.611 72 36 1 10 80 3 74 1.26e-14 70.9
MS.gene063941.t1 AT4G11880 48.611 72 36 1 10 80 3 74 1.26e-14 70.9
MS.gene063941.t1 AT5G51860 50.746 67 33 0 10 76 3 69 1.26e-14 70.9
MS.gene063941.t1 AT5G51870 50.746 67 33 0 10 76 3 69 1.30e-14 70.9
MS.gene063941.t1 AT1G69120 43.373 83 44 1 9 91 2 81 1.41e-14 71.2
MS.gene063941.t1 AT5G51870 50.746 67 33 0 10 76 13 79 1.51e-14 70.9
MS.gene063941.t1 AT2G22630 47.059 68 36 0 9 76 2 69 2.07e-14 70.5
MS.gene063941.t1 AT2G22630 47.059 68 36 0 9 76 2 69 2.07e-14 70.5
MS.gene063941.t1 AT4G37940 45.588 68 37 0 9 76 2 69 3.50e-14 69.7
MS.gene063941.t1 AT5G10140 47.826 69 35 1 9 76 2 70 3.68e-14 68.6
MS.gene063941.t1 AT3G30260 29.878 164 99 4 9 172 2 149 3.92e-14 70.1
MS.gene063941.t1 AT4G37940 45.588 68 37 0 9 76 2 69 4.03e-14 69.7
MS.gene063941.t1 AT4G37940 45.588 68 37 0 9 76 2 69 4.06e-14 68.6
MS.gene063941.t1 AT1G28450 29.371 143 95 3 5 141 4 146 4.38e-14 68.9
MS.gene063941.t1 AT5G10140 47.826 69 35 1 9 76 2 70 4.78e-14 68.6
MS.gene063941.t1 AT5G10140 47.826 69 35 1 9 76 2 70 5.30e-14 68.6
MS.gene063941.t1 AT5G10140 47.826 69 35 1 9 76 2 70 5.50e-14 68.9
MS.gene063941.t1 AT2G14210 46.377 69 36 1 9 76 2 70 1.04e-13 68.6
MS.gene063941.t1 AT2G14210 46.377 69 36 1 9 76 2 70 1.13e-13 68.6
MS.gene063941.t1 AT3G02310 47.826 69 35 1 9 76 2 70 1.52e-13 67.8
MS.gene063941.t1 AT2G22540 50.746 67 28 1 10 76 3 64 1.73e-13 68.2
MS.gene063941.t1 AT3G54340 47.619 63 33 0 9 71 2 64 1.93e-13 67.8
MS.gene063941.t1 AT5G15800 46.377 69 36 1 9 76 2 70 3.51e-13 67.4
MS.gene063941.t1 AT5G23260 43.617 94 45 3 5 90 12 105 3.92e-13 67.4
MS.gene063941.t1 AT3G02310 47.826 69 35 1 9 76 2 70 3.94e-13 67.4
MS.gene063941.t1 AT5G23260 43.617 94 45 3 5 90 12 105 4.21e-13 67.4
MS.gene063941.t1 AT5G20240 48.387 62 32 0 9 70 2 63 4.33e-13 65.1
MS.gene063941.t1 AT5G15800 46.377 69 36 1 9 76 2 70 4.68e-13 67.4
MS.gene063941.t1 AT5G23260 43.182 88 44 2 9 90 2 89 6.19e-13 66.6
MS.gene063941.t1 AT5G23260 43.182 88 44 2 9 90 2 89 6.74e-13 66.6
MS.gene063941.t1 AT2G03710 51.786 56 27 0 9 64 2 57 8.33e-13 65.5
MS.gene063941.t1 AT3G58780 51.667 60 29 0 6 65 14 73 9.08e-13 66.2
MS.gene063941.t1 AT1G24260 46.377 69 36 1 9 76 2 70 9.59e-13 66.2
MS.gene063941.t1 AT1G24260 46.377 69 36 1 9 76 2 70 9.89e-13 66.2
MS.gene063941.t1 AT1G24260 46.377 69 36 1 9 76 2 70 1.08e-12 65.9
MS.gene063941.t1 AT3G58780 51.667 60 29 0 6 65 14 73 1.20e-12 66.2
MS.gene063941.t1 AT5G20240 44.286 70 37 1 9 76 2 71 1.66e-12 65.1
MS.gene063941.t1 AT2G03710 51.786 56 27 0 9 64 2 57 2.88e-12 65.1
MS.gene063941.t1 AT2G03710 51.786 56 27 0 9 64 2 57 3.14e-12 64.7
MS.gene063941.t1 AT5G65050 43.478 69 38 1 9 76 2 70 4.66e-12 63.2
MS.gene063941.t1 AT1G47760 34.483 116 61 3 9 123 2 103 5.94e-12 62.8
MS.gene063941.t1 AT5G65070 40.580 69 40 1 9 76 2 70 8.82e-12 61.6
MS.gene063941.t1 AT5G65050 43.478 69 38 1 9 76 2 70 9.12e-12 62.4
MS.gene063941.t1 AT5G65050 43.478 69 38 1 9 76 2 70 1.05e-11 62.4
MS.gene063941.t1 AT5G65050 43.478 69 38 1 9 76 2 70 1.05e-11 62.4
MS.gene063941.t1 AT5G65060 43.478 69 38 1 9 76 2 70 1.40e-11 62.0
MS.gene063941.t1 AT5G65060 43.478 69 38 1 9 76 2 70 1.78e-11 61.6
MS.gene063941.t1 AT5G65060 43.478 69 38 1 9 76 2 70 2.10e-11 61.6
MS.gene063941.t1 AT1G46408 33.613 119 70 3 10 119 5 123 2.29e-11 62.4
MS.gene063941.t1 AT5G65070 40.580 69 40 1 9 76 2 70 2.32e-11 61.6
MS.gene063941.t1 AT1G71692 42.029 69 39 1 10 77 3 71 2.42e-11 61.6
MS.gene063941.t1 AT5G65070 40.580 69 40 1 9 76 2 70 3.42e-11 61.2
MS.gene063941.t1 AT5G65070 40.580 69 40 1 9 76 2 70 3.57e-11 61.6

Find 56 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGTTTGGTTTCAACAATA+TGG 0.234944 8.1:+61078180 MS.gene063941:CDS
ATTTGAGTTTGCGGAGGATT+TGG 0.289021 8.1:-61078116 None:intergenic
TCTTCTCCATGTCCAGTAAC+TGG 0.302941 8.1:-61077857 None:intergenic
TGGTGGGCTGGTCCCGTTGA+TGG 0.316276 8.1:+61077930 MS.gene063941:CDS
AGGCGACCGAGGCTCAATTT+TGG 0.319875 8.1:+61077910 MS.gene063941:CDS
ATTGCATGGTACCATTGTTT+TGG 0.337688 8.1:-61077773 None:intergenic
TTGTTTGGTTTCAACAATAT+GGG 0.345119 8.1:+61078181 MS.gene063941:CDS
TTTGGATGAAACTAAGAAAC+TGG 0.369975 8.1:+61077989 MS.gene063941:CDS
GACTCAGATCAACCAGTTAC+TGG 0.372422 8.1:+61077845 MS.gene063941:CDS
ATGTTGCAGTCTCATTTGTT+TGG 0.376821 8.1:+61078166 MS.gene063941:CDS
TGCTGATAGGCTTGTAATCC+AGG 0.383576 8.1:+61078022 MS.gene063941:CDS
GTCCCGTTGATGGGATGAAT+AGG 0.432754 8.1:+61077940 MS.gene063941:CDS
GCGGAGGATTTGGTTGATGA+TGG 0.439291 8.1:-61078106 None:intergenic
AACAAATGAGACTGCAACAT+AGG 0.451158 8.1:-61078163 None:intergenic
GGTGGGCTGGTCCCGTTGAT+GGG 0.452333 8.1:+61077931 MS.gene063941:CDS
TCCCGTTGATGGGATGAATA+GGG 0.453040 8.1:+61077941 MS.gene063941:CDS
TGGTTGCACATCATGCTGAT+AGG 0.453644 8.1:+61078009 MS.gene063941:CDS
CCTCGGTCGCCTTGCGCAAG+TGG 0.465805 8.1:-61077899 None:intergenic
CTCTATGACCGTATCAACAT+TGG 0.477809 8.1:-61077727 None:intergenic
GCCCTATTCATCCCATCAAC+GGG 0.481029 8.1:-61077942 None:intergenic
GGAGGTGGATATGGACCCTC+TGG 0.496777 8.1:+61078208 MS.gene063941:CDS
ATGATGGAGAGGCATGTTAG+AGG 0.501643 8.1:-61078090 None:intergenic
GCTGGAAACATTTGAGTTTG+CGG 0.508183 8.1:-61078125 None:intergenic
ACTGAGAGTGCAAAGCTCAC+TGG 0.526727 8.1:-61077643 None:intergenic
GGCCCTATTCATCCCATCAA+CGG 0.536262 8.1:-61077943 None:intergenic
TCTATGACCGTATCAACATT+GGG 0.539713 8.1:-61077726 None:intergenic
TGGCCAACCCAATGTTGATA+CGG 0.545005 8.1:+61077719 MS.gene063941:CDS
TTAAGGTGGATCTAAGGGCT+CGG 0.548099 8.1:-61078242 None:intergenic
CCACTTGCGCAAGGCGACCG+AGG 0.551221 8.1:+61077899 MS.gene063941:CDS
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 8.1:+61077607 MS.gene063941:CDS
TGTTTGGTTTCAACAATATG+GGG 0.556331 8.1:+61078182 MS.gene063941:CDS
ATTCAACCATGTCGAGTGGA+AGG 0.567884 8.1:+61077520 None:intergenic
ACAAATGAGACTGCAACATA+GGG 0.571944 8.1:-61078162 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 8.1:+61077606 MS.gene063941:CDS
GCTCACGCACATTGGCGCTA+CGG 0.585858 8.1:-61077809 None:intergenic
GATCAACCAGTTACTGGACA+TGG 0.586550 8.1:+61077851 MS.gene063941:CDS
AATGAAAATACCTTCTCCCC+AGG 0.587583 8.1:-61077696 None:intergenic
AGCCCACCAAAATTGAGCCT+CGG 0.589062 8.1:-61077916 None:intergenic
TGACCGTATCAACATTGGGT+TGG 0.600758 8.1:-61077722 None:intergenic
TGGTTTGAGTAGGAGCACCC+TGG 0.605264 8.1:-61078040 None:intergenic
GTTTGGTTTCAACAATATGG+GGG 0.607401 8.1:+61078183 MS.gene063941:CDS
AGTGAGCTTTGCACTCTCAG+TGG 0.609659 8.1:+61077645 MS.gene063941:CDS
AGAGCTGAACCACTTGCGCA+AGG 0.610527 8.1:+61077890 MS.gene063941:CDS
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 8.1:-61077620 None:intergenic
GGATTTGGTTGATGATGGAG+AGG 0.611456 8.1:-61078101 None:intergenic
AGTATTGAGCTCACGCACAT+TGG 0.613452 8.1:-61077817 None:intergenic
TGTGATTCAACCATGTCGAG+TGG 0.620546 8.1:+61077516 None:intergenic
GCTGATAGGCTTGTAATCCA+GGG 0.636302 8.1:+61078023 MS.gene063941:CDS
TTTGGTTTCAACAATATGGG+GGG 0.638238 8.1:+61078184 MS.gene063941:CDS
TGGTACCATGCAATTCATTG+AGG 0.638950 8.1:+61077782 MS.gene063941:CDS
CGAGTCCCACCCCAAAACAA+TGG 0.639467 8.1:+61077762 MS.gene063941:CDS
GTGAGCCTCAATGAATTGCA+TGG 0.640763 8.1:-61077787 None:intergenic
GGAAACATTTGAGTTTGCGG+AGG 0.647148 8.1:-61078122 None:intergenic
TCGGATCAAAAGAATCCAGA+GGG 0.678771 8.1:-61078223 None:intergenic
CTCGGATCAAAAGAATCCAG+AGG 0.678961 8.1:-61078224 None:intergenic
TCGAGTGGAAGGAAAAGCCG+AGG 0.691796 8.1:+61077531 MS.gene063941:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTGAAAAATTCAAGTT+GGG - chr8.1:61077967-61077986 None:intergenic 20.0%
!!! TTTTTTTCATCTCAATCTTT+TGG - chr8.1:61077560-61077579 None:intergenic 20.0%
! ATTTCCAACAAAAAATGGAA+TGG - chr8.1:61078063-61078082 None:intergenic 25.0%
!! TTGTTTGGTTTCAACAATAT+GGG + chr8.1:61078181-61078200 MS.gene063941:CDS 25.0%
!! TTTGTTTGGTTTCAACAATA+TGG + chr8.1:61078180-61078199 MS.gene063941:CDS 25.0%
!!! ATTCCATTTTTTGTTGGAAA+TGG + chr8.1:61078062-61078081 MS.gene063941:CDS 25.0%
!!! CCAACTTGAATTTTTCAAAA+AGG + chr8.1:61077965-61077984 MS.gene063941:CDS 25.0%
!!! CCTTTTTGAAAAATTCAAGT+TGG - chr8.1:61077968-61077987 None:intergenic 25.0%
!!! TGAATTTTTCAAAAAGGCTT+TGG + chr8.1:61077971-61077990 MS.gene063941:CDS 25.0%
AAAAATGGAATGGTTTGAGT+AGG - chr8.1:61078053-61078072 None:intergenic 30.0%
GAACCATTTCCAACAAAAAA+TGG - chr8.1:61078068-61078087 None:intergenic 30.0%
TTTGGATGAAACTAAGAAAC+TGG + chr8.1:61077989-61078008 MS.gene063941:CDS 30.0%
! TGTTTGGTTTCAACAATATG+GGG + chr8.1:61078182-61078201 MS.gene063941:CDS 30.0%
!!! CAAACCATTCCATTTTTTGT+TGG + chr8.1:61078056-61078075 MS.gene063941:CDS 30.0%
AACAAATGAGACTGCAACAT+AGG - chr8.1:61078166-61078185 None:intergenic 35.0%
ACAAATGAGACTGCAACATA+GGG - chr8.1:61078165-61078184 None:intergenic 35.0%
ATGTTGCAGTCTCATTTGTT+TGG + chr8.1:61078166-61078185 MS.gene063941:CDS 35.0%
TCTATGACCGTATCAACATT+GGG - chr8.1:61077729-61077748 None:intergenic 35.0%
! ATTGCATGGTACCATTGTTT+TGG - chr8.1:61077776-61077795 None:intergenic 35.0%
! GTTTGGTTTCAACAATATGG+GGG + chr8.1:61078183-61078202 MS.gene063941:CDS 35.0%
! TTGCATGGTACCATTGTTTT+GGG - chr8.1:61077775-61077794 None:intergenic 35.0%
! TTTGGTTTCAACAATATGGG+GGG + chr8.1:61078184-61078203 MS.gene063941:CDS 35.0%
AATGAAAATACCTTCTCCCC+AGG - chr8.1:61077699-61077718 None:intergenic 40.0%
CTCTATGACCGTATCAACAT+TGG - chr8.1:61077730-61077749 None:intergenic 40.0%
TCGGATCAAAAGAATCCAGA+GGG - chr8.1:61078226-61078245 None:intergenic 40.0%
TGGTACCATGCAATTCATTG+AGG + chr8.1:61077782-61077801 MS.gene063941:CDS 40.0%
! ATTTGAGTTTGCGGAGGATT+TGG - chr8.1:61078119-61078138 None:intergenic 40.0%
! GCTGGAAACATTTGAGTTTG+CGG - chr8.1:61078128-61078147 None:intergenic 40.0%
!! AGGGTTCTGAAAAATTGTGC+TGG - chr8.1:61078146-61078165 None:intergenic 40.0%
!! TGCATGGTACCATTGTTTTG+GGG - chr8.1:61077774-61077793 None:intergenic 40.0%
!!! GGGGAGAAGGTATTTTCATT+TGG + chr8.1:61077699-61077718 MS.gene063941:CDS 40.0%
CTCGGATCAAAAGAATCCAG+AGG - chr8.1:61078227-61078246 None:intergenic 45.0%
CTTTCTTGAAGAGCCCACTA+CGG - chr8.1:61077623-61077642 None:intergenic 45.0%
GACTCAGATCAACCAGTTAC+TGG + chr8.1:61077845-61077864 MS.gene063941:CDS 45.0%
GATCAACCAGTTACTGGACA+TGG + chr8.1:61077851-61077870 MS.gene063941:CDS 45.0%
GCTGATAGGCTTGTAATCCA+GGG + chr8.1:61078023-61078042 MS.gene063941:CDS 45.0%
GTGAGCCTCAATGAATTGCA+TGG - chr8.1:61077790-61077809 None:intergenic 45.0%
TCTTCTCCATGTCCAGTAAC+TGG - chr8.1:61077860-61077879 None:intergenic 45.0%
TGACCGTATCAACATTGGGT+TGG - chr8.1:61077725-61077744 None:intergenic 45.0%
TGCTGATAGGCTTGTAATCC+AGG + chr8.1:61078022-61078041 MS.gene063941:CDS 45.0%
TGGCCAACCCAATGTTGATA+CGG + chr8.1:61077719-61077738 MS.gene063941:CDS 45.0%
TGGTTGCACATCATGCTGAT+AGG + chr8.1:61078009-61078028 MS.gene063941:CDS 45.0%
! AGTATTGAGCTCACGCACAT+TGG - chr8.1:61077820-61077839 None:intergenic 45.0%
! ATGATGGAGAGGCATGTTAG+AGG - chr8.1:61078093-61078112 None:intergenic 45.0%
! GGAAACATTTGAGTTTGCGG+AGG - chr8.1:61078125-61078144 None:intergenic 45.0%
! TCCCGTTGATGGGATGAATA+GGG + chr8.1:61077941-61077960 MS.gene063941:CDS 45.0%
! TCTCAATCTTTTGGCGACCT+CGG - chr8.1:61077551-61077570 None:intergenic 45.0%
!! CTCTCGTTGTTTTCTCACCT+GGG + chr8.1:61077679-61077698 MS.gene063941:CDS 45.0%
!! GGATTTGGTTGATGATGGAG+AGG - chr8.1:61078104-61078123 None:intergenic 45.0%
!! TCTCGTTGTTTTCTCACCTG+GGG + chr8.1:61077680-61077699 MS.gene063941:CDS 45.0%
!!! ATGGTACCATTGTTTTGGGG+TGG - chr8.1:61077771-61077790 None:intergenic 45.0%
!!! TGGTACCATTGTTTTGGGGT+GGG - chr8.1:61077770-61077789 None:intergenic 45.0%
AGCCCACCAAAATTGAGCCT+CGG - chr8.1:61077919-61077938 None:intergenic 50.0%
AGTGAGCTTTGCACTCTCAG+TGG + chr8.1:61077645-61077664 MS.gene063941:CDS 50.0%
GCCCTATTCATCCCATCAAC+GGG - chr8.1:61077945-61077964 None:intergenic 50.0%
GGCCCTATTCATCCCATCAA+CGG - chr8.1:61077946-61077965 None:intergenic 50.0%
GGTTTCAACAATATGGGGGG+AGG + chr8.1:61078187-61078206 MS.gene063941:CDS 50.0%
TTCAACAATATGGGGGGAGG+AGG + chr8.1:61078190-61078209 MS.gene063941:CDS 50.0%
! ACTGAGAGTGCAAAGCTCAC+TGG - chr8.1:61077646-61077665 None:intergenic 50.0%
! GTCCCGTTGATGGGATGAAT+AGG + chr8.1:61077940-61077959 MS.gene063941:CDS 50.0%
! TGTTTTCTCACCTGGGGAGA+AGG + chr8.1:61077686-61077705 MS.gene063941:CDS 50.0%
!! GACCGAGGCTCAATTTTGGT+GGG + chr8.1:61077914-61077933 MS.gene063941:CDS 50.0%
!! GCGGAGGATTTGGTTGATGA+TGG - chr8.1:61078109-61078128 None:intergenic 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG + chr8.1:61077678-61077697 MS.gene063941:CDS 50.0%
AACAATATGGGGGGAGGAGG+TGG + chr8.1:61078193-61078212 MS.gene063941:CDS 55.0%
AGAGCTGAACCACTTGCGCA+AGG + chr8.1:61077890-61077909 MS.gene063941:CDS 55.0%
CGAGTCCCACCCCAAAACAA+TGG + chr8.1:61077762-61077781 MS.gene063941:CDS 55.0%
TCGAGTGGAAGGAAAAGCCG+AGG + chr8.1:61077531-61077550 MS.gene063941:CDS 55.0%
! AGGCGACCGAGGCTCAATTT+TGG + chr8.1:61077910-61077929 MS.gene063941:CDS 55.0%
! CGACCGAGGCTCAATTTTGG+TGG + chr8.1:61077913-61077932 MS.gene063941:CDS 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG + chr8.1:61077606-61077625 MS.gene063941:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG + chr8.1:61077607-61077626 MS.gene063941:CDS 55.0%
!! GAGGCTCAATTTTGGTGGGC+TGG + chr8.1:61077918-61077937 MS.gene063941:CDS 55.0%
!! TGGTTTGAGTAGGAGCACCC+TGG - chr8.1:61078043-61078062 None:intergenic 55.0%
ATGGGGGGAGGAGGTGGATA+TGG + chr8.1:61078199-61078218 MS.gene063941:CDS 60.0%
GCTCACGCACATTGGCGCTA+CGG - chr8.1:61077812-61077831 None:intergenic 60.0%
GGAGGTGGATATGGACCCTC+TGG + chr8.1:61078208-61078227 MS.gene063941:CDS 60.0%
!! GGTGGGCTGGTCCCGTTGAT+GGG + chr8.1:61077931-61077950 MS.gene063941:CDS 65.0%
!! TGGTGGGCTGGTCCCGTTGA+TGG + chr8.1:61077930-61077949 MS.gene063941:CDS 65.0%
CCACTTGCGCAAGGCGACCG+AGG + chr8.1:61077899-61077918 MS.gene063941:CDS 70.0%
CCTCGGTCGCCTTGCGCAAG+TGG - chr8.1:61077902-61077921 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 61077528 61078253 61077528 ID=MS.gene063941
chr8.1 mRNA 61077528 61078253 61077528 ID=MS.gene063941.t1;Parent=MS.gene063941
chr8.1 exon 61077528 61078253 61077528 ID=MS.gene063941.t1.exon1;Parent=MS.gene063941.t1
chr8.1 CDS 61077528 61078253 61077528 ID=cds.MS.gene063941.t1;Parent=MS.gene063941.t1
Gene Sequence

>MS.gene063941

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTCAGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGGGAGAAGGTATTTTCATTTGGCCAACCCAATGTTGATACGGTCATAGAGCGTTATCTCTCTCGAGTCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGCGCCAATGTGCGTGAGCTCAATACTCAGCTGACTCAGATCAACCAGTTACTGGACATGGAGAAGAAACGTGCTGAAGAGCTGAACCACTTGCGCAAGGCGACCGAGGCTCAATTTTGGTGGGCTGGTCCCGTTGATGGGATGAATAGGGCCCAACTTGAATTTTTCAAAAAGGCTTTGGATGAAACTAAGAAACTGGTTGCACATCATGCTGATAGGCTTGTAATCCAGGGTGCTCCTACTCAAACCATTCCATTTTTTGTTGGAAATGGTTCATCCTCTAACATGCCTCTCCATCATCAACCAAATCCTCCGCAAACTCAAATGTTTCCAGCACAATTTTTCAGAACCCTATGTTGCAGTCTCATTTGTTTGGTTTCAACAATATGGGGGGAGGAGGTGGATATGGACCCTCTGGATTCTTTTGATCCGAGCCCTTAG
Protein sequence

>MS.gene063941.t1

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLSGADVALVVFSPGEKVFSFGQPNVDTVIERYLSRVPPQNNGTMQFIEAHRSANVRELNTQLTQINQLLDMEKKRAEELNHLRKATEAQFWWAGPVDGMNRAQLEFFKKALDETKKLVAHHADRLVIQGAPTQTIPFFVGNGSSSNMPLHHQPNPPQTQMFPAQFFRTLCCSLICLVSTIWGEEVDMDPLDSFDPSP