AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene063947

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063947.t1 MTR_8g043650 93.249 237 16 0 1 237 1 237 1.95e-165 456
MS.gene063947.t1 MTR_1g105910 91.561 237 20 0 1 237 1 237 1.27e-153 426
MS.gene063947.t1 MTR_1g105920 89.954 219 22 0 1 219 1 219 3.57e-148 412
MS.gene063947.t1 MTR_1g012570 89.451 237 25 0 1 237 1 237 3.13e-145 405
MS.gene063947.t1 MTR_2g030740 87.764 237 29 0 1 237 1 237 1.10e-144 404
MS.gene063947.t1 MTR_3g052920 85.388 219 32 0 1 219 1 219 1.93e-140 393
MS.gene063947.t1 MTR_1g105905 83.636 220 36 0 18 237 1 220 6.55e-136 381
MS.gene063947.t1 MTR_3g052870 78.995 219 27 1 1 219 1 200 1.03e-121 345
MS.gene063947.t1 MTR_0121s0080 70.886 237 68 1 1 237 1 236 5.32e-118 336
MS.gene063947.t1 MTR_3g030770 72.340 235 47 3 1 225 1 227 9.13e-117 333
MS.gene063947.t1 MTR_5g055100 66.667 237 79 0 1 237 1 237 1.11e-116 333
MS.gene063947.t1 MTR_1g106070 86.264 182 25 0 1 182 1 182 3.76e-116 329
MS.gene063947.t1 MTR_1g108510 72.340 235 47 3 1 225 1 227 6.70e-116 330
MS.gene063947.t1 MTR_2g085280 66.102 236 80 0 1 236 1 236 1.31e-114 328
MS.gene063947.t1 MTR_2g085250 66.102 236 80 0 1 236 1 236 3.08e-114 327
MS.gene063947.t1 MTR_1g077360 68.889 225 70 0 1 225 1 225 3.99e-113 324
MS.gene063947.t1 MTR_2g093190 71.064 235 50 3 1 225 1 227 3.91e-112 321
MS.gene063947.t1 MTR_1g075600 68.889 225 70 0 1 225 1 225 5.64e-112 321
MS.gene063947.t1 MTR_5g045560 69.198 237 73 0 1 237 1 237 6.95e-112 321
MS.gene063947.t1 MTR_1g108580 70.213 235 52 3 1 225 1 227 1.18e-111 320
MS.gene063947.t1 MTR_5g053390 66.667 225 75 0 1 225 1 225 5.53e-107 308
MS.gene063947.t1 MTR_7g062350 65.471 223 75 2 16 237 27 248 3.32e-99 289
MS.gene063947.t1 MTR_1g075570 61.798 178 54 1 18 195 1 164 3.06e-67 205
MS.gene063947.t1 MTR_0121s0100 76.562 128 30 0 1 128 1 128 3.47e-65 198
MS.gene063947.t1 MTR_3g030780 71.212 132 38 0 1 132 1 132 5.56e-61 188
MS.gene063947.t1 MTR_3g080940 50.270 185 82 1 7 191 7 181 1.51e-60 189
MS.gene063947.t1 MTR_3g067910 66.667 102 34 0 21 122 2 103 1.11e-43 143
MS.gene063947.t1 MTR_2g105290 39.766 171 93 2 5 172 8 171 3.87e-39 134
MS.gene063947.t1 MTR_8g086290 40.964 166 88 2 5 167 8 166 7.45e-39 133
MS.gene063947.t1 MTR_7g028448 43.871 155 75 3 5 159 8 150 1.35e-32 117
MS.gene063947.t1 MTR_4g036915 43.871 155 75 3 5 159 8 150 1.35e-32 117
MS.gene063947.t1 MTR_4g127140 38.122 181 92 4 5 172 8 181 8.40e-30 110
MS.gene063947.t1 MTR_1g108500 57.522 113 25 2 8 118 94 185 8.79e-30 114
MS.gene063947.t1 MTR_3g067875 83.929 56 9 0 18 73 1 56 5.12e-27 99.4
MS.gene063947.t1 MTR_3g067870 69.841 63 19 0 16 78 83 145 1.54e-22 90.5
MS.gene063947.t1 MTR_1g047550 59.420 69 28 0 9 77 2 70 5.87e-22 89.4
MS.gene063947.t1 MTR_3g067915 47.872 94 49 0 33 126 3 96 1.18e-21 86.3
MS.gene063947.t1 MTR_8g079502 59.420 69 28 0 9 77 2 70 1.19e-21 88.6
MS.gene063947.t1 MTR_4g131030 38.793 116 56 2 9 109 2 117 2.86e-21 88.6
MS.gene063947.t1 MTR_8g051580 44.554 101 54 1 9 109 2 100 3.79e-21 87.4
MS.gene063947.t1 MTR_1g054265 44.554 101 54 1 9 109 2 100 4.84e-21 86.7
MS.gene063947.t1 MTR_1g063160 42.342 111 61 2 9 118 2 110 1.43e-20 85.9
MS.gene063947.t1 MTR_8g046350 44.330 97 49 1 9 105 2 93 1.71e-19 82.4
MS.gene063947.t1 MTR_4g094632 40.566 106 61 1 9 114 2 105 1.02e-18 80.5
MS.gene063947.t1 MTR_4g093970 57.576 66 28 0 10 75 29 94 1.42e-17 79.3
MS.gene063947.t1 MTR_4g094638 41.509 106 61 1 9 113 2 107 1.54e-17 77.8
MS.gene063947.t1 MTR_3g452380 42.453 106 51 1 3 108 11 106 2.36e-17 78.6
MS.gene063947.t1 MTR_1g053070 33.333 165 95 3 9 172 2 152 3.00e-17 78.6
MS.gene063947.t1 MTR_4g102530 50.685 73 36 0 10 82 3 75 4.00e-17 77.4
MS.gene063947.t1 MTR_3g005530 50.000 68 34 0 9 76 2 69 8.08e-17 77.0
MS.gene063947.t1 MTR_8g033270 51.471 68 33 0 9 76 2 69 2.76e-16 75.9
MS.gene063947.t1 MTR_3g102570 32.530 166 98 5 9 162 2 165 4.38e-16 76.3
MS.gene063947.t1 MTR_8g087860 51.471 68 33 0 9 76 18 85 5.85e-16 75.1
MS.gene063947.t1 MTR_5g032150 29.384 211 130 6 9 201 2 211 6.28e-16 74.7
MS.gene063947.t1 MTR_5g032520 28.169 213 129 6 9 201 2 210 6.57e-16 74.3
MS.gene063947.t1 MTR_5g066180 50.000 68 34 0 9 76 2 69 6.62e-16 74.3
MS.gene063947.t1 MTR_6g464720 49.275 69 34 1 9 76 2 70 7.56e-16 74.7
MS.gene063947.t1 MTR_1g101970 50.000 68 34 0 9 76 2 69 8.01e-16 73.6
MS.gene063947.t1 MTR_4g109830 47.826 69 35 1 9 76 2 70 1.28e-15 73.9
MS.gene063947.t1 MTR_2g017865 40.385 104 61 1 9 112 17 119 1.43e-15 73.9
MS.gene063947.t1 MTR_3g437790 34.266 143 77 4 26 159 30 164 2.25e-15 72.0
MS.gene063947.t1 MTR_7g075870 50.746 67 33 0 10 76 3 69 3.73e-15 72.0
MS.gene063947.t1 MTR_2g009890 48.529 68 35 0 9 76 2 69 3.86e-15 73.2
MS.gene063947.t1 MTR_8g033220 47.436 78 41 0 10 87 3 80 4.35e-15 72.0
MS.gene063947.t1 MTR_8g033220 47.436 78 41 0 10 87 3 80 4.97e-15 72.0
MS.gene063947.t1 MTR_4g084740 46.053 76 39 2 9 83 2 76 1.11e-14 72.4
MS.gene063947.t1 MTR_8g066260 40.964 83 46 1 9 91 2 81 1.22e-14 71.2
MS.gene063947.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 2.27e-14 70.1
MS.gene063947.t1 MTR_5g046790 45.070 71 36 1 9 79 2 69 2.28e-14 70.1
MS.gene063947.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 2.41e-14 70.5
MS.gene063947.t1 MTR_0003s0590 50.000 68 34 0 9 76 2 69 2.45e-14 70.5
MS.gene063947.t1 MTR_5g046870 47.826 69 35 1 9 76 2 70 3.53e-14 67.0
MS.gene063947.t1 MTR_8g022970 31.818 154 92 3 8 155 17 163 5.14e-14 68.6
MS.gene063947.t1 MTR_2g461710 53.571 56 26 0 9 64 2 57 5.41e-14 65.1
MS.gene063947.t1 MTR_4g109810 31.120 241 131 12 9 230 2 226 9.39e-14 68.9
MS.gene063947.t1 MTR_7g075870 50.000 68 33 1 10 76 3 70 9.61e-14 68.2
MS.gene063947.t1 MTR_6g015975 46.377 69 36 1 9 76 2 70 1.76e-13 68.2
MS.gene063947.t1 MTR_7g016630 43.478 69 38 1 9 76 2 70 2.27e-13 67.8
MS.gene063947.t1 MTR_7g016600 46.377 69 36 1 9 76 2 70 2.29e-13 67.8
MS.gene063947.t1 MTR_1g038300 47.143 70 35 1 9 76 2 71 2.40e-13 67.4
MS.gene063947.t1 MTR_5g021270 47.143 70 35 1 9 76 2 71 2.79e-13 67.4
MS.gene063947.t1 MTR_5g021270 47.143 70 35 1 9 76 2 71 2.86e-13 67.4
MS.gene063947.t1 MTR_4g051538 32.317 164 99 3 1 164 1 152 5.69e-13 66.6
MS.gene063947.t1 MTR_3g084980 47.826 69 35 1 9 76 2 70 6.07e-13 66.6
MS.gene063947.t1 MTR_7g075850 45.714 70 36 1 9 76 2 71 6.97e-13 66.6
MS.gene063947.t1 MTR_1g029670 42.857 70 38 1 9 76 2 71 7.85e-13 65.1
MS.gene063947.t1 MTR_8g097090 46.377 69 36 1 9 76 2 70 8.06e-13 66.2
MS.gene063947.t1 MTR_5g066960 47.368 57 30 0 9 65 2 58 1.72e-12 61.2
MS.gene063947.t1 MTR_3g088615 41.429 70 39 1 9 76 2 71 4.32e-12 63.2
MS.gene063947.t1 MTR_3g113030 46.032 63 34 0 9 71 2 64 5.91e-12 63.5
MS.gene063947.t1 MTR_4g108720 27.429 175 107 8 9 172 2 167 5.14e-11 62.0
MS.gene063947.t1 MTR_3g109930 30.935 139 82 4 27 159 20 150 8.99e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063947.t1 AT5G60440 54.497 189 77 4 5 189 3 186 1.72e-59 190
MS.gene063947.t1 AT2G24840 47.561 164 75 4 6 163 60 218 2.13e-41 142
MS.gene063947.t1 AT4G36590 46.914 162 80 2 5 160 3 164 1.54e-40 139
MS.gene063947.t1 AT1G65360 38.326 227 125 6 5 225 3 220 1.58e-38 134
MS.gene063947.t1 AT1G01530 40.609 197 95 5 4 192 2 184 2.52e-38 134
MS.gene063947.t1 AT2G34440 45.299 117 55 2 9 121 2 113 6.77e-26 99.8
MS.gene063947.t1 AT3G66656 41.732 127 70 1 9 131 2 128 3.49e-25 97.8
MS.gene063947.t1 AT3G04100 30.263 152 102 2 2 149 7 158 2.48e-22 91.3
MS.gene063947.t1 AT1G72350 35.374 147 62 4 9 155 43 156 2.84e-20 86.3
MS.gene063947.t1 AT1G28460 30.636 173 110 4 5 174 4 169 2.24e-18 80.1
MS.gene063947.t1 AT4G22950 47.059 85 40 1 10 89 3 87 4.14e-18 79.3
MS.gene063947.t1 AT4G09960 46.512 86 45 1 9 93 2 87 5.39e-18 80.1
MS.gene063947.t1 AT4G09960 46.512 86 45 1 9 93 2 87 6.38e-18 80.1
MS.gene063947.t1 AT4G09960 46.512 86 45 1 9 93 3 88 6.76e-18 80.1
MS.gene063947.t1 AT4G09960 46.512 86 45 1 9 93 12 97 9.36e-18 79.7
MS.gene063947.t1 AT2G45650 52.941 68 32 0 9 76 2 69 1.11e-17 79.7
MS.gene063947.t1 AT4G09960 46.512 86 45 1 9 93 28 113 1.33e-17 79.7
MS.gene063947.t1 AT4G22950 50.000 76 38 0 10 85 3 78 1.45e-17 79.0
MS.gene063947.t1 AT4G22950 50.000 76 38 0 10 85 3 78 1.45e-17 79.0
MS.gene063947.t1 AT4G09960 46.512 86 45 1 9 93 97 182 3.40e-17 79.7
MS.gene063947.t1 AT1G29962 29.070 172 115 4 5 169 4 175 5.48e-17 76.6
MS.gene063947.t1 AT4G18960 42.308 104 49 2 5 108 15 107 1.36e-16 77.0
MS.gene063947.t1 AT2G22540 51.471 68 33 0 9 76 2 69 2.34e-16 75.9
MS.gene063947.t1 AT2G22540 51.471 68 33 0 9 76 2 69 2.34e-16 75.9
MS.gene063947.t1 AT2G45660 50.000 68 34 0 10 77 3 70 2.63e-16 73.9
MS.gene063947.t1 AT3G61120 51.471 68 33 0 9 76 2 69 6.19e-16 74.7
MS.gene063947.t1 AT2G42830 47.368 76 40 0 1 76 9 84 6.37e-16 74.7
MS.gene063947.t1 AT3G57230 47.059 68 36 0 9 76 2 69 6.46e-16 72.8
MS.gene063947.t1 AT2G45660 50.000 68 34 0 10 77 3 70 6.53e-16 74.3
MS.gene063947.t1 AT2G42830 47.368 76 40 0 1 76 9 84 6.75e-16 74.7
MS.gene063947.t1 AT3G58780 50.704 71 35 0 6 76 14 84 6.82e-16 74.7
MS.gene063947.t1 AT3G58780 50.704 71 35 0 6 76 20 90 7.80e-16 74.7
MS.gene063947.t1 AT1G22130 36.190 105 66 1 9 112 2 106 8.26e-16 75.9
MS.gene063947.t1 AT5G62165 49.254 67 34 0 10 76 3 69 9.82e-16 71.2
MS.gene063947.t1 AT3G58780 50.704 71 35 0 6 76 14 84 1.18e-15 74.7
MS.gene063947.t1 AT1G77980 37.143 105 65 1 9 112 2 106 1.64e-15 74.7
MS.gene063947.t1 AT1G77950 46.053 76 39 2 9 83 2 76 1.68e-15 73.9
MS.gene063947.t1 AT1G77950 46.053 76 39 2 9 83 2 76 1.68e-15 73.9
MS.gene063947.t1 AT1G77950 46.053 76 39 2 9 83 2 76 1.68e-15 73.9
MS.gene063947.t1 AT1G77950 46.053 76 39 2 9 83 2 76 1.68e-15 73.9
MS.gene063947.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.85e-15 71.6
MS.gene063947.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.85e-15 71.6
MS.gene063947.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.85e-15 71.6
MS.gene063947.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.85e-15 71.6
MS.gene063947.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.85e-15 71.6
MS.gene063947.t1 AT3G57230 47.059 68 36 0 9 76 2 69 2.33e-15 73.2
MS.gene063947.t1 AT3G57230 47.059 68 36 0 9 76 2 69 2.33e-15 73.2
MS.gene063947.t1 AT4G24540 34.459 148 80 5 9 156 2 132 2.42e-15 72.8
MS.gene063947.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.43e-15 71.2
MS.gene063947.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.43e-15 71.2
MS.gene063947.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.43e-15 71.2
MS.gene063947.t1 AT3G57390 48.529 68 35 0 9 76 2 69 3.42e-15 72.4
MS.gene063947.t1 AT1G69120 40.659 91 51 1 9 99 2 89 4.33e-15 72.4
MS.gene063947.t1 AT4G11880 48.611 72 36 1 10 80 3 74 4.43e-15 71.2
MS.gene063947.t1 AT4G11880 48.611 72 36 1 10 80 3 74 4.43e-15 71.2
MS.gene063947.t1 AT2G22630 47.059 68 36 0 9 76 2 69 5.28e-15 72.0
MS.gene063947.t1 AT2G22630 47.059 68 36 0 9 76 2 69 5.28e-15 72.0
MS.gene063947.t1 AT5G51870 50.746 67 33 0 10 76 3 69 5.64e-15 70.9
MS.gene063947.t1 AT3G57390 48.529 68 35 0 9 76 2 69 5.97e-15 72.4
MS.gene063947.t1 AT1G69120 40.659 91 51 1 9 99 2 89 6.60e-15 72.4
MS.gene063947.t1 AT5G60910 49.296 71 33 1 9 79 2 69 6.63e-15 72.0
MS.gene063947.t1 AT5G62165 49.254 67 34 0 10 76 3 69 7.12e-15 71.2
MS.gene063947.t1 AT5G62165 49.254 67 34 0 10 76 3 69 7.12e-15 71.2
MS.gene063947.t1 AT5G62165 49.254 67 34 0 10 76 3 69 8.80e-15 71.2
MS.gene063947.t1 AT5G62165 49.254 67 34 0 10 76 3 69 8.80e-15 71.2
MS.gene063947.t1 AT5G62165 49.254 67 34 0 10 76 3 69 8.80e-15 71.2
MS.gene063947.t1 AT1G17310 50.633 79 37 1 8 86 47 123 8.82e-15 71.2
MS.gene063947.t1 AT5G13790 40.777 103 56 2 9 111 2 99 9.21e-15 72.0
MS.gene063947.t1 AT4G11880 48.611 72 36 1 10 80 3 74 9.68e-15 71.2
MS.gene063947.t1 AT4G11880 48.611 72 36 1 10 80 3 74 9.68e-15 71.2
MS.gene063947.t1 AT5G51870 50.746 67 33 0 10 76 3 69 9.84e-15 70.9
MS.gene063947.t1 AT5G51870 47.222 72 38 0 5 76 21 92 9.89e-15 70.9
MS.gene063947.t1 AT5G13790 41.935 93 45 1 9 101 2 85 1.00e-14 72.0
MS.gene063947.t1 AT1G26310 47.826 69 35 1 9 76 2 70 1.09e-14 71.6
MS.gene063947.t1 AT1G17310 35.119 168 68 5 8 170 58 189 1.18e-14 71.2
MS.gene063947.t1 AT5G51860 50.746 67 33 0 10 76 3 69 1.58e-14 70.1
MS.gene063947.t1 AT5G51870 50.746 67 33 0 10 76 3 69 1.65e-14 70.5
MS.gene063947.t1 AT3G30260 28.485 165 100 4 9 172 2 149 1.68e-14 70.9
MS.gene063947.t1 AT5G51860 50.746 67 33 0 10 76 3 69 1.69e-14 70.5
MS.gene063947.t1 AT5G51870 50.746 67 33 0 10 76 13 79 1.85e-14 70.5
MS.gene063947.t1 AT5G10140 47.826 69 35 1 9 76 2 70 2.17e-14 68.9
MS.gene063947.t1 AT4G37940 45.588 68 37 0 9 76 2 69 2.22e-14 70.1
MS.gene063947.t1 AT4G37940 45.588 68 37 0 9 76 2 69 2.30e-14 69.3
MS.gene063947.t1 AT1G28450 29.371 143 95 3 5 141 4 146 2.31e-14 69.3
MS.gene063947.t1 AT4G37940 45.588 68 37 0 9 76 2 69 2.89e-14 70.1
MS.gene063947.t1 AT5G10140 47.826 69 35 1 9 76 2 70 2.91e-14 68.9
MS.gene063947.t1 AT5G10140 47.826 69 35 1 9 76 2 70 3.38e-14 69.3
MS.gene063947.t1 AT5G10140 47.826 69 35 1 9 76 2 70 3.47e-14 68.9
MS.gene063947.t1 AT1G24260 29.461 241 134 11 9 234 2 221 5.99e-14 69.3
MS.gene063947.t1 AT2G22540 50.000 68 29 1 9 76 2 64 7.49e-14 68.9
MS.gene063947.t1 AT2G14210 46.377 69 36 1 9 76 2 70 9.03e-14 68.9
MS.gene063947.t1 AT2G14210 46.377 69 36 1 9 76 2 70 1.01e-13 68.6
MS.gene063947.t1 AT1G24260 27.559 254 136 11 9 234 2 235 1.09e-13 68.9
MS.gene063947.t1 AT3G54340 47.619 63 33 0 9 71 2 64 1.46e-13 68.2
MS.gene063947.t1 AT3G02310 47.826 69 35 1 9 76 2 70 1.58e-13 67.4
MS.gene063947.t1 AT5G20240 48.387 62 32 0 9 70 2 63 1.81e-13 66.2
MS.gene063947.t1 AT5G23260 43.617 94 45 3 5 90 12 105 3.04e-13 67.8
MS.gene063947.t1 AT5G15800 46.377 69 36 1 9 76 2 70 3.18e-13 67.4
MS.gene063947.t1 AT5G23260 43.617 94 45 3 5 90 12 105 3.29e-13 67.8
MS.gene063947.t1 AT3G02310 47.826 69 35 1 9 76 2 70 3.37e-13 67.4
MS.gene063947.t1 AT5G15800 46.377 69 36 1 9 76 2 70 4.24e-13 67.4
MS.gene063947.t1 AT3G58780 51.667 60 29 0 6 65 14 73 4.83e-13 67.0
MS.gene063947.t1 AT5G23260 43.182 88 44 2 9 90 2 89 4.89e-13 66.6
MS.gene063947.t1 AT5G20240 48.387 62 32 0 9 70 2 63 5.37e-13 66.2
MS.gene063947.t1 AT5G23260 43.182 88 44 2 9 90 2 89 5.49e-13 67.0
MS.gene063947.t1 AT3G58780 51.667 60 29 0 6 65 14 73 5.88e-13 67.0
MS.gene063947.t1 AT1G24260 27.344 256 133 12 9 234 2 234 6.11e-13 66.6
MS.gene063947.t1 AT2G03710 51.786 56 27 0 9 64 2 57 1.31e-12 64.7
MS.gene063947.t1 AT1G47760 34.483 116 61 3 9 123 2 103 1.85e-12 64.3
MS.gene063947.t1 AT2G03710 51.786 56 27 0 9 64 2 57 3.45e-12 64.7
MS.gene063947.t1 AT2G03710 51.786 56 27 0 9 64 2 57 3.62e-12 64.7
MS.gene063947.t1 AT5G65050 43.478 69 38 1 9 76 2 70 8.04e-12 62.4
MS.gene063947.t1 AT5G65070 40.580 69 40 1 9 76 2 70 9.14e-12 61.6
MS.gene063947.t1 AT5G65050 43.478 69 38 1 9 76 2 70 1.09e-11 62.0
MS.gene063947.t1 AT5G65050 43.478 69 38 1 9 76 2 70 1.12e-11 62.0
MS.gene063947.t1 AT5G65050 43.478 69 38 1 9 76 2 70 1.24e-11 62.4
MS.gene063947.t1 AT1G71692 41.429 70 40 1 9 77 2 71 1.55e-11 62.0
MS.gene063947.t1 AT5G65060 43.478 69 38 1 9 76 2 70 2.12e-11 61.2
MS.gene063947.t1 AT5G65070 40.580 69 40 1 9 76 2 70 2.19e-11 61.6
MS.gene063947.t1 AT5G65060 43.478 69 38 1 9 76 2 70 2.31e-11 61.2
MS.gene063947.t1 AT5G65060 43.478 69 38 1 9 76 2 70 2.73e-11 61.2
MS.gene063947.t1 AT5G65070 40.580 69 40 1 9 76 2 70 3.26e-11 61.2
MS.gene063947.t1 AT5G65070 40.580 69 40 1 9 76 2 70 3.53e-11 61.6
MS.gene063947.t1 AT4G37435 37.349 83 46 2 9 85 2 84 6.10e-11 60.1
MS.gene063947.t1 AT1G46408 35.294 119 68 4 10 119 5 123 8.78e-11 60.8

Find 55 sgRNAs with CRISPR-Local

Find 77 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGTTTGGTTTCAACAATA+TGG 0.234944 8.1:+61041861 MS.gene063947:CDS
ATTTGAGTTTGCGGAGGATT+TGG 0.289021 8.1:-61041796 None:intergenic
TCTTCTCCATGTCCAGTAAC+TGG 0.302941 8.1:-61041537 None:intergenic
TGGTGGGCTGGTCCCGTTGA+TGG 0.316276 8.1:+61041610 MS.gene063947:CDS
AGGCGACCGAGGCTCAATTT+TGG 0.319875 8.1:+61041590 MS.gene063947:CDS
TTGTTTGGTTTCAACAATAT+GGG 0.345119 8.1:+61041862 MS.gene063947:CDS
GACTCAGATCAACCAGTTAC+TGG 0.372422 8.1:+61041525 MS.gene063947:CDS
ATGTTGCAGTCTCATTTGTT+TGG 0.376821 8.1:+61041847 MS.gene063947:CDS
TGCTGATAGGCTTGTAATCC+AGG 0.383576 8.1:+61041702 MS.gene063947:CDS
ATTGCATGGTACCATTGTTT+TGG 0.409018 8.1:-61041453 None:intergenic
GTCCCGTTGATGGGATGAAT+AGG 0.432754 8.1:+61041620 MS.gene063947:CDS
TTTGGATGAGACTAAGAAAC+TGG 0.433965 8.1:+61041669 MS.gene063947:CDS
GCGGAGGATTTGGTTGATGA+TGG 0.439291 8.1:-61041786 None:intergenic
AACAAATGAGACTGCAACAT+AGG 0.451158 8.1:-61041844 None:intergenic
GGTGGGCTGGTCCCGTTGAT+GGG 0.452333 8.1:+61041611 MS.gene063947:CDS
TCCCGTTGATGGGATGAATA+GGG 0.453040 8.1:+61041621 MS.gene063947:CDS
TGGTTGCACATCATGCTGAT+AGG 0.453644 8.1:+61041689 MS.gene063947:CDS
CCTCGGTCGCCTTGCGCAAG+TGG 0.465805 8.1:-61041579 None:intergenic
CTCTATGACCGTATCAACAT+TGG 0.477809 8.1:-61041407 None:intergenic
GCCCTATTCATCCCATCAAC+GGG 0.481029 8.1:-61041622 None:intergenic
GGAGGTGGATATGGACCCTC+TGG 0.496777 8.1:+61041889 MS.gene063947:CDS
ATGATGGAGAGGCATGTTAG+AGG 0.501643 8.1:-61041770 None:intergenic
GCTGGAAACATTTGAGTTTG+CGG 0.508183 8.1:-61041805 None:intergenic
ACTGAGAGTGCAAAGCTCAC+TGG 0.526727 8.1:-61041323 None:intergenic
GGCCCTATTCATCCCATCAA+CGG 0.536262 8.1:-61041623 None:intergenic
TCTATGACCGTATCAACATT+GGG 0.539713 8.1:-61041406 None:intergenic
TGGCCAACCCAATGTTGATA+CGG 0.545005 8.1:+61041399 MS.gene063947:CDS
CCACTTGCGCAAGGCGACCG+AGG 0.551221 8.1:+61041579 MS.gene063947:CDS
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 8.1:+61041287 MS.gene063947:CDS
TGTTTGGTTTCAACAATATG+GGG 0.556331 8.1:+61041863 MS.gene063947:CDS
ATTCAACCATGTCGAGTGGA+AGG 0.567884 8.1:+61041200 None:intergenic
ACAAATGAGACTGCAACATA+GGG 0.571944 8.1:-61041843 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 8.1:+61041286 MS.gene063947:CDS
GCTCACGCACATTGGCGCTA+CGG 0.585858 8.1:-61041489 None:intergenic
GATCAACCAGTTACTGGACA+TGG 0.586550 8.1:+61041531 MS.gene063947:CDS
AATGAAAATACCTTCTCCCC+AGG 0.587583 8.1:-61041376 None:intergenic
AGCCCACCAAAATTGAGCCT+CGG 0.589062 8.1:-61041596 None:intergenic
TGACCGTATCAACATTGGGT+TGG 0.600758 8.1:-61041402 None:intergenic
TGGTTTGAGTAGGAGCACCC+TGG 0.605264 8.1:-61041720 None:intergenic
GTTTGGTTTCAACAATATGG+GGG 0.607401 8.1:+61041864 MS.gene063947:CDS
AGTGAGCTTTGCACTCTCAG+TGG 0.609659 8.1:+61041325 MS.gene063947:CDS
AGAGCTGAACCACTTGCGCA+AGG 0.610527 8.1:+61041570 MS.gene063947:CDS
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 8.1:-61041300 None:intergenic
GGATTTGGTTGATGATGGAG+AGG 0.611456 8.1:-61041781 None:intergenic
AGTATTGAGCTCACGCACAT+TGG 0.613452 8.1:-61041497 None:intergenic
TGTGATTCAACCATGTCGAG+TGG 0.620546 8.1:+61041196 None:intergenic
GCTGATAGGCTTGTAATCCA+GGG 0.636302 8.1:+61041703 MS.gene063947:CDS
TTTGGTTTCAACAATATGGG+GGG 0.638238 8.1:+61041865 MS.gene063947:CDS
TGGTACCATGCAATTCATTG+AGG 0.638950 8.1:+61041462 MS.gene063947:CDS
GTGAGCCTCAATGAATTGCA+TGG 0.640763 8.1:-61041467 None:intergenic
GGAAACATTTGAGTTTGCGG+AGG 0.647148 8.1:-61041802 None:intergenic
CGAGTCCCACACCAAAACAA+TGG 0.664538 8.1:+61041442 MS.gene063947:CDS
TCGGATCAAAAGAATCCAGA+GGG 0.678771 8.1:-61041904 None:intergenic
CTCGGATCAAAAGAATCCAG+AGG 0.678961 8.1:-61041905 None:intergenic
TCGAGTGGAAGGAAAAGCCG+AGG 0.691796 8.1:+61041211 MS.gene063947:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTGAAAAATTCAAGTT+GGG - chr8.1:61041647-61041666 None:intergenic 20.0%
!!! TTTTTTTCATCTCAATCTTT+TGG - chr8.1:61041240-61041259 None:intergenic 20.0%
! ATTTCCAACAAAAAATGGAA+TGG - chr8.1:61041743-61041762 None:intergenic 25.0%
!! TTGTTTGGTTTCAACAATAT+GGG + chr8.1:61041862-61041881 MS.gene063947:CDS 25.0%
!! TTTGTTTGGTTTCAACAATA+TGG + chr8.1:61041861-61041880 MS.gene063947:CDS 25.0%
!!! ATTCCATTTTTTGTTGGAAA+TGG + chr8.1:61041742-61041761 MS.gene063947:CDS 25.0%
!!! CCAACTTGAATTTTTCAAAA+AGG + chr8.1:61041645-61041664 MS.gene063947:CDS 25.0%
!!! CCTTTTTGAAAAATTCAAGT+TGG - chr8.1:61041648-61041667 None:intergenic 25.0%
!!! TGAATTTTTCAAAAAGGCTT+TGG + chr8.1:61041651-61041670 MS.gene063947:CDS 25.0%
AAAAATGGAATGGTTTGAGT+AGG - chr8.1:61041733-61041752 None:intergenic 30.0%
GAACCATTTCCAACAAAAAA+TGG - chr8.1:61041748-61041767 None:intergenic 30.0%
! TGTTTGGTTTCAACAATATG+GGG + chr8.1:61041863-61041882 MS.gene063947:CDS 30.0%
!!! CAAACCATTCCATTTTTTGT+TGG + chr8.1:61041736-61041755 MS.gene063947:CDS 30.0%
AACAAATGAGACTGCAACAT+AGG - chr8.1:61041847-61041866 None:intergenic 35.0%
ACAAATGAGACTGCAACATA+GGG - chr8.1:61041846-61041865 None:intergenic 35.0%
ATGTTGCAGTCTCATTTGTT+TGG + chr8.1:61041847-61041866 MS.gene063947:CDS 35.0%
TCTATGACCGTATCAACATT+GGG - chr8.1:61041409-61041428 None:intergenic 35.0%
TTTGGATGAGACTAAGAAAC+TGG + chr8.1:61041669-61041688 MS.gene063947:CDS 35.0%
! ATTGCATGGTACCATTGTTT+TGG - chr8.1:61041456-61041475 None:intergenic 35.0%
! GTTTGGTTTCAACAATATGG+GGG + chr8.1:61041864-61041883 MS.gene063947:CDS 35.0%
! TTTGGTTTCAACAATATGGG+GGG + chr8.1:61041865-61041884 MS.gene063947:CDS 35.0%
AATGAAAATACCTTCTCCCC+AGG - chr8.1:61041379-61041398 None:intergenic 40.0%
CTCTATGACCGTATCAACAT+TGG - chr8.1:61041410-61041429 None:intergenic 40.0%
TGGTACCATGCAATTCATTG+AGG + chr8.1:61041462-61041481 MS.gene063947:CDS 40.0%
! ATTTGAGTTTGCGGAGGATT+TGG - chr8.1:61041799-61041818 None:intergenic 40.0%
! GCTGGAAACATTTGAGTTTG+CGG - chr8.1:61041808-61041827 None:intergenic 40.0%
!! GGGTTCTGAAAAAATTGTGC+TGG - chr8.1:61041826-61041845 None:intergenic 40.0%
!!! ATGGTACCATTGTTTTGGTG+TGG - chr8.1:61041451-61041470 None:intergenic 40.0%
!!! GGGGAGAAGGTATTTTCATT+TGG + chr8.1:61041379-61041398 MS.gene063947:CDS 40.0%
!!! TGGTACCATTGTTTTGGTGT+GGG - chr8.1:61041450-61041469 None:intergenic 40.0%
CTTTCTTGAAGAGCCCACTA+CGG - chr8.1:61041303-61041322 None:intergenic 45.0%
GACTCAGATCAACCAGTTAC+TGG + chr8.1:61041525-61041544 MS.gene063947:CDS 45.0%
GATCAACCAGTTACTGGACA+TGG + chr8.1:61041531-61041550 MS.gene063947:CDS 45.0%
GCTGATAGGCTTGTAATCCA+GGG + chr8.1:61041703-61041722 MS.gene063947:CDS 45.0%
GTGAGCCTCAATGAATTGCA+TGG - chr8.1:61041470-61041489 None:intergenic 45.0%
TCTTCTCCATGTCCAGTAAC+TGG - chr8.1:61041540-61041559 None:intergenic 45.0%
TGACCGTATCAACATTGGGT+TGG - chr8.1:61041405-61041424 None:intergenic 45.0%
TGCTGATAGGCTTGTAATCC+AGG + chr8.1:61041702-61041721 MS.gene063947:CDS 45.0%
TGGCCAACCCAATGTTGATA+CGG + chr8.1:61041399-61041418 MS.gene063947:CDS 45.0%
TGGTTGCACATCATGCTGAT+AGG + chr8.1:61041689-61041708 MS.gene063947:CDS 45.0%
! AGTATTGAGCTCACGCACAT+TGG - chr8.1:61041500-61041519 None:intergenic 45.0%
! ATGATGGAGAGGCATGTTAG+AGG - chr8.1:61041773-61041792 None:intergenic 45.0%
! GGAAACATTTGAGTTTGCGG+AGG - chr8.1:61041805-61041824 None:intergenic 45.0%
! TCCCGTTGATGGGATGAATA+GGG + chr8.1:61041621-61041640 MS.gene063947:CDS 45.0%
! TCTCAATCTTTTGGCGACCT+CGG - chr8.1:61041231-61041250 None:intergenic 45.0%
!! CTCTCGTTGTTTTCTCACCT+GGG + chr8.1:61041359-61041378 MS.gene063947:CDS 45.0%
!! GGATTTGGTTGATGATGGAG+AGG - chr8.1:61041784-61041803 None:intergenic 45.0%
!! TCTCGTTGTTTTCTCACCTG+GGG + chr8.1:61041360-61041379 MS.gene063947:CDS 45.0%
AGCCCACCAAAATTGAGCCT+CGG - chr8.1:61041599-61041618 None:intergenic 50.0%
AGTGAGCTTTGCACTCTCAG+TGG + chr8.1:61041325-61041344 MS.gene063947:CDS 50.0%
CGAGTCCCACACCAAAACAA+TGG + chr8.1:61041442-61041461 MS.gene063947:CDS 50.0%
GCCCTATTCATCCCATCAAC+GGG - chr8.1:61041625-61041644 None:intergenic 50.0%
GGCCCTATTCATCCCATCAA+CGG - chr8.1:61041626-61041645 None:intergenic 50.0%
GGTTTCAACAATATGGGGGG+AGG + chr8.1:61041868-61041887 MS.gene063947:CDS 50.0%
TTCAACAATATGGGGGGAGG+AGG + chr8.1:61041871-61041890 MS.gene063947:CDS 50.0%
! ACTGAGAGTGCAAAGCTCAC+TGG - chr8.1:61041326-61041345 None:intergenic 50.0%
! GTCCCGTTGATGGGATGAAT+AGG + chr8.1:61041620-61041639 MS.gene063947:CDS 50.0%
! TGTTTTCTCACCTGGGGAGA+AGG + chr8.1:61041366-61041385 MS.gene063947:CDS 50.0%
!! GACCGAGGCTCAATTTTGGT+GGG + chr8.1:61041594-61041613 MS.gene063947:CDS 50.0%
!! GCGGAGGATTTGGTTGATGA+TGG - chr8.1:61041789-61041808 None:intergenic 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG + chr8.1:61041358-61041377 MS.gene063947:CDS 50.0%
AACAATATGGGGGGAGGAGG+TGG + chr8.1:61041874-61041893 MS.gene063947:CDS 55.0%
AGAGCTGAACCACTTGCGCA+AGG + chr8.1:61041570-61041589 MS.gene063947:CDS 55.0%
TCGAGTGGAAGGAAAAGCCG+AGG + chr8.1:61041211-61041230 MS.gene063947:CDS 55.0%
! AGGCGACCGAGGCTCAATTT+TGG + chr8.1:61041590-61041609 MS.gene063947:CDS 55.0%
! CGACCGAGGCTCAATTTTGG+TGG + chr8.1:61041593-61041612 MS.gene063947:CDS 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG + chr8.1:61041286-61041305 MS.gene063947:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG + chr8.1:61041287-61041306 MS.gene063947:CDS 55.0%
!! GAGGCTCAATTTTGGTGGGC+TGG + chr8.1:61041598-61041617 MS.gene063947:CDS 55.0%
!! TGGTTTGAGTAGGAGCACCC+TGG - chr8.1:61041723-61041742 None:intergenic 55.0%
ATGGGGGGAGGAGGTGGATA+TGG + chr8.1:61041880-61041899 MS.gene063947:CDS 60.0%
GCTCACGCACATTGGCGCTA+CGG - chr8.1:61041492-61041511 None:intergenic 60.0%
GGAGGTGGATATGGACCCTC+TGG + chr8.1:61041889-61041908 MS.gene063947:CDS 60.0%
!! GGTGGGCTGGTCCCGTTGAT+GGG + chr8.1:61041611-61041630 MS.gene063947:CDS 65.0%
!! TGGTGGGCTGGTCCCGTTGA+TGG + chr8.1:61041610-61041629 MS.gene063947:CDS 65.0%
CCACTTGCGCAAGGCGACCG+AGG + chr8.1:61041579-61041598 MS.gene063947:CDS 70.0%
CCTCGGTCGCCTTGCGCAAG+TGG - chr8.1:61041582-61041601 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 61041208 61041921 61041208 ID=MS.gene063947
chr8.1 mRNA 61041208 61041921 61041208 ID=MS.gene063947.t1;Parent=MS.gene063947
chr8.1 exon 61041208 61041921 61041208 ID=MS.gene063947.t1.exon1;Parent=MS.gene063947.t1
chr8.1 CDS 61041208 61041921 61041208 ID=cds.MS.gene063947.t1;Parent=MS.gene063947.t1
Gene Sequence

>MS.gene063947

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTCAGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGGGAGAAGGTATTTTCATTTGGCCAACCCAATGTTGATACGGTCATAGAGCGTTATCTCTCTCGAGTCCCACACCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGCGCCAATGTGCGTGAGCTCAATACTCAGCTGACTCAGATCAACCAGTTACTGGACATGGAGAAGAAACGTGCTGAAGAGCTGAACCACTTGCGCAAGGCGACCGAGGCTCAATTTTGGTGGGCTGGTCCCGTTGATGGGATGAATAGGGCCCAACTTGAATTTTTCAAAAAGGCTTTGGATGAGACTAAGAAACTGGTTGCACATCATGCTGATAGGCTTGTAATCCAGGGTGCTCCTACTCAAACCATTCCATTTTTTGTTGGAAATGGTTCATCCTCTAACATGCCTCTCCATCATCAACCAAATCCTCCGCAAACTCAAATGTTTCCAGCACAATTTTTTCAGAACCCTATGTTGCAGTCTCATTTGTTTGGTTTCAACAATATGGGGGGAGGAGGTGGATATGGACCCTCTGGATTCTTTTGA
Protein sequence

>MS.gene063947.t1

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLSGADVALVVFSPGEKVFSFGQPNVDTVIERYLSRVPHQNNGTMQFIEAHRSANVRELNTQLTQINQLLDMEKKRAEELNHLRKATEAQFWWAGPVDGMNRAQLEFFKKALDETKKLVAHHADRLVIQGAPTQTIPFFVGNGSSSNMPLHHQPNPPQTQMFPAQFFQNPMLQSHLFGFNNMGGGGGYGPSGFF