AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene063950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063950.t1 MTR_8g043650 93.671 237 15 0 1 237 1 237 3.98e-166 458
MS.gene063950.t1 MTR_1g105910 91.983 237 19 0 1 237 1 237 1.89e-154 428
MS.gene063950.t1 MTR_1g105920 90.868 219 20 0 1 219 1 219 6.74e-151 419
MS.gene063950.t1 MTR_2g030740 87.764 237 29 0 1 237 1 237 4.25e-145 405
MS.gene063950.t1 MTR_1g012570 89.451 237 25 0 1 237 1 237 1.08e-144 404
MS.gene063950.t1 MTR_3g052920 85.388 219 32 0 1 219 1 219 7.37e-141 394
MS.gene063950.t1 MTR_1g105905 84.091 220 35 0 18 237 1 220 1.31e-136 382
MS.gene063950.t1 MTR_3g052870 79.452 219 26 1 1 219 1 200 5.23e-123 348
MS.gene063950.t1 MTR_0121s0080 71.308 237 67 1 1 237 1 236 1.75e-119 340
MS.gene063950.t1 MTR_3g030770 72.766 235 46 3 1 225 1 227 6.44e-118 336
MS.gene063950.t1 MTR_5g055100 67.089 237 78 0 1 237 1 237 1.03e-117 335
MS.gene063950.t1 MTR_1g108510 72.766 235 46 3 1 225 1 227 5.64e-117 333
MS.gene063950.t1 MTR_1g106070 86.264 182 25 0 1 182 1 182 5.71e-116 329
MS.gene063950.t1 MTR_2g085280 66.525 236 79 0 1 236 1 236 8.77e-116 330
MS.gene063950.t1 MTR_2g085250 66.525 236 79 0 1 236 1 236 2.08e-115 330
MS.gene063950.t1 MTR_1g077360 69.333 225 69 0 1 225 1 225 8.65e-115 328
MS.gene063950.t1 MTR_1g075600 69.333 225 69 0 1 225 1 225 1.85e-113 325
MS.gene063950.t1 MTR_2g093190 71.489 235 49 3 1 225 1 227 2.53e-113 324
MS.gene063950.t1 MTR_5g045560 69.198 237 73 0 1 237 1 237 1.20e-111 320
MS.gene063950.t1 MTR_1g108580 70.213 235 52 3 1 225 1 227 1.29e-111 320
MS.gene063950.t1 MTR_5g053390 67.111 225 74 0 1 225 1 225 7.14e-108 310
MS.gene063950.t1 MTR_7g062350 65.471 223 75 2 16 237 27 248 2.14e-99 290
MS.gene063950.t1 MTR_1g075570 62.360 178 53 1 18 195 1 164 1.74e-68 208
MS.gene063950.t1 MTR_0121s0100 77.344 128 29 0 1 128 1 128 8.57e-67 202
MS.gene063950.t1 MTR_3g030780 71.970 132 37 0 1 132 1 132 1.87e-62 191
MS.gene063950.t1 MTR_3g080940 50.811 185 81 1 7 191 7 181 1.28e-61 192
MS.gene063950.t1 MTR_3g067910 66.667 102 34 0 21 122 2 103 6.36e-44 144
MS.gene063950.t1 MTR_2g105290 39.181 171 94 2 5 172 8 171 1.65e-39 134
MS.gene063950.t1 MTR_8g086290 40.964 166 88 2 5 167 8 166 6.54e-39 133
MS.gene063950.t1 MTR_7g028448 43.871 155 75 3 5 159 8 150 7.48e-33 117
MS.gene063950.t1 MTR_4g036915 43.871 155 75 3 5 159 8 150 7.48e-33 117
MS.gene063950.t1 MTR_4g127140 38.122 181 92 4 5 172 8 181 4.47e-30 110
MS.gene063950.t1 MTR_1g108500 57.522 113 25 2 8 118 94 185 8.79e-30 114
MS.gene063950.t1 MTR_3g067875 83.929 56 9 0 18 73 1 56 5.70e-27 99.4
MS.gene063950.t1 MTR_3g067915 48.936 94 48 0 33 126 3 96 2.81e-23 90.5
MS.gene063950.t1 MTR_3g067870 69.841 63 19 0 16 78 83 145 1.47e-22 90.5
MS.gene063950.t1 MTR_1g047550 59.420 69 28 0 9 77 2 70 7.17e-22 89.4
MS.gene063950.t1 MTR_8g079502 59.420 69 28 0 9 77 2 70 1.47e-21 88.6
MS.gene063950.t1 MTR_8g051580 37.580 157 80 3 9 162 2 143 2.71e-21 87.8
MS.gene063950.t1 MTR_4g131030 38.793 116 56 2 9 109 2 117 5.34e-21 87.8
MS.gene063950.t1 MTR_1g054265 44.554 101 54 1 9 109 2 100 6.99e-21 86.3
MS.gene063950.t1 MTR_1g063160 44.643 112 57 3 9 118 2 110 7.54e-21 86.7
MS.gene063950.t1 MTR_8g046350 37.692 130 73 2 9 135 2 126 2.27e-19 82.4
MS.gene063950.t1 MTR_4g094632 40.566 106 61 1 9 114 2 105 1.86e-18 79.7
MS.gene063950.t1 MTR_3g452380 42.453 106 51 1 3 108 11 106 1.23e-17 79.3
MS.gene063950.t1 MTR_4g093970 57.576 66 28 0 10 75 29 94 1.28e-17 79.3
MS.gene063950.t1 MTR_1g053070 33.333 165 95 3 9 172 2 152 2.40e-17 79.0
MS.gene063950.t1 MTR_4g094638 41.509 106 61 1 9 113 2 107 3.21e-17 77.0
MS.gene063950.t1 MTR_4g102530 50.685 73 36 0 10 82 3 75 4.21e-17 77.4
MS.gene063950.t1 MTR_3g005530 50.000 68 34 0 9 76 2 69 8.16e-17 77.0
MS.gene063950.t1 MTR_8g033270 51.471 68 33 0 9 76 2 69 3.06e-16 75.9
MS.gene063950.t1 MTR_3g102570 42.308 104 57 3 9 111 2 103 3.85e-16 76.3
MS.gene063950.t1 MTR_5g032150 29.384 211 130 6 9 201 2 211 4.77e-16 74.7
MS.gene063950.t1 MTR_8g087860 51.471 68 33 0 9 76 18 85 5.67e-16 75.1
MS.gene063950.t1 MTR_5g066180 50.000 68 34 0 9 76 2 69 6.10e-16 74.3
MS.gene063950.t1 MTR_5g032520 28.169 213 129 6 9 201 2 210 6.24e-16 74.7
MS.gene063950.t1 MTR_6g464720 49.275 69 34 1 9 76 2 70 7.19e-16 74.7
MS.gene063950.t1 MTR_2g017865 28.649 185 103 4 9 167 17 198 8.06e-16 74.7
MS.gene063950.t1 MTR_1g101970 50.000 68 34 0 9 76 2 69 8.43e-16 73.6
MS.gene063950.t1 MTR_4g109830 47.826 69 35 1 9 76 2 70 1.31e-15 73.6
MS.gene063950.t1 MTR_8g022970 32.278 158 94 3 8 159 17 167 1.89e-15 72.4
MS.gene063950.t1 MTR_7g075870 38.182 110 66 1 10 119 3 110 2.72e-15 72.4
MS.gene063950.t1 MTR_8g033220 47.436 78 41 0 10 87 3 80 3.74e-15 72.4
MS.gene063950.t1 MTR_2g009890 48.529 68 35 0 9 76 2 69 3.75e-15 73.2
MS.gene063950.t1 MTR_8g033220 47.436 78 41 0 10 87 3 80 4.10e-15 72.4
MS.gene063950.t1 MTR_4g084740 46.053 76 39 2 9 83 2 76 1.17e-14 72.4
MS.gene063950.t1 MTR_8g066260 40.964 83 46 1 9 91 2 81 1.30e-14 71.2
MS.gene063950.t1 MTR_3g437790 33.566 143 78 4 26 159 30 164 1.64e-14 69.7
MS.gene063950.t1 MTR_4g109810 31.818 242 128 13 9 230 2 226 1.91e-14 70.9
MS.gene063950.t1 MTR_5g046790 45.070 71 36 1 9 79 2 69 2.02e-14 70.1
MS.gene063950.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 2.27e-14 70.1
MS.gene063950.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 2.46e-14 70.5
MS.gene063950.t1 MTR_0003s0590 50.000 68 34 0 9 76 2 69 2.60e-14 70.5
MS.gene063950.t1 MTR_5g046870 47.826 69 35 1 9 76 2 70 3.46e-14 67.0
MS.gene063950.t1 MTR_2g461710 53.571 56 26 0 9 64 2 57 5.30e-14 65.1
MS.gene063950.t1 MTR_7g075870 37.838 111 66 2 10 119 3 111 6.61e-14 68.6
MS.gene063950.t1 MTR_6g015975 46.377 69 36 1 9 76 2 70 1.83e-13 68.2
MS.gene063950.t1 MTR_1g038300 47.143 70 35 1 9 76 2 71 2.31e-13 67.4
MS.gene063950.t1 MTR_7g016600 46.377 69 36 1 9 76 2 70 2.31e-13 67.8
MS.gene063950.t1 MTR_7g016630 43.478 69 38 1 9 76 2 70 2.48e-13 67.8
MS.gene063950.t1 MTR_4g051538 32.500 160 96 3 5 164 5 152 2.64e-13 67.4
MS.gene063950.t1 MTR_5g021270 47.143 70 35 1 9 76 2 71 2.95e-13 67.4
MS.gene063950.t1 MTR_5g021270 47.143 70 35 1 9 76 2 71 3.14e-13 67.0
MS.gene063950.t1 MTR_3g084980 47.826 69 35 1 9 76 2 70 6.01e-13 66.6
MS.gene063950.t1 MTR_7g075850 45.714 70 36 1 9 76 2 71 7.11e-13 66.6
MS.gene063950.t1 MTR_8g097090 46.377 69 36 1 9 76 2 70 7.37e-13 66.2
MS.gene063950.t1 MTR_1g029670 42.857 70 38 1 9 76 2 71 8.78e-13 65.1
MS.gene063950.t1 MTR_5g066960 47.368 57 30 0 9 65 2 58 1.64e-12 61.2
MS.gene063950.t1 MTR_3g109930 30.000 140 82 3 27 159 20 150 4.67e-12 62.8
MS.gene063950.t1 MTR_3g088615 41.429 70 39 1 9 76 2 71 4.69e-12 63.2
MS.gene063950.t1 MTR_3g113030 46.032 63 34 0 9 71 2 64 6.03e-12 63.5
MS.gene063950.t1 MTR_4g093030 39.286 84 35 1 9 76 2 85 1.87e-11 60.8
MS.gene063950.t1 MTR_4g108720 27.841 176 105 7 9 172 2 167 3.98e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063950.t1 AT5G60440 53.723 188 80 3 5 189 3 186 8.05e-60 191
MS.gene063950.t1 AT2G24840 47.561 164 75 4 6 163 60 218 9.15e-41 140
MS.gene063950.t1 AT4G36590 46.296 162 81 2 5 160 3 164 5.35e-39 135
MS.gene063950.t1 AT1G65360 38.326 227 125 6 5 225 3 220 1.53e-38 134
MS.gene063950.t1 AT1G01530 40.526 190 105 3 4 192 2 184 1.25e-37 132
MS.gene063950.t1 AT2G34440 45.299 117 55 2 9 121 2 113 7.94e-26 99.4
MS.gene063950.t1 AT3G66656 41.732 127 70 1 9 131 2 128 4.50e-25 97.8
MS.gene063950.t1 AT3G04100 31.579 152 100 3 2 149 7 158 2.93e-22 91.3
MS.gene063950.t1 AT1G72350 35.374 147 62 4 9 155 43 156 2.48e-20 86.3
MS.gene063950.t1 AT4G09960 46.512 86 45 1 9 93 2 87 3.16e-18 80.5
MS.gene063950.t1 AT4G09960 46.512 86 45 1 9 93 2 87 4.23e-18 80.5
MS.gene063950.t1 AT4G09960 46.512 86 45 1 9 93 3 88 4.26e-18 80.5
MS.gene063950.t1 AT1G28460 31.429 140 93 1 5 141 4 143 4.60e-18 79.3
MS.gene063950.t1 AT4G22950 49.351 77 39 0 10 86 3 79 5.61e-18 79.0
MS.gene063950.t1 AT4G09960 46.512 86 45 1 9 93 12 97 5.61e-18 80.5
MS.gene063950.t1 AT4G09960 46.512 86 45 1 9 93 28 113 8.59e-18 80.1
MS.gene063950.t1 AT2G45650 52.941 68 32 0 9 76 2 69 1.17e-17 79.7
MS.gene063950.t1 AT4G22950 50.000 76 38 0 10 85 3 78 2.19e-17 78.2
MS.gene063950.t1 AT4G22950 50.000 76 38 0 10 85 3 78 2.19e-17 78.2
MS.gene063950.t1 AT4G09960 46.512 86 45 1 9 93 97 182 2.60e-17 79.7
MS.gene063950.t1 AT4G18960 42.308 104 49 2 5 108 15 107 1.57e-16 76.6
MS.gene063950.t1 AT1G29962 29.070 172 115 4 5 169 4 175 1.91e-16 75.1
MS.gene063950.t1 AT2G22540 51.471 68 33 0 9 76 2 69 2.16e-16 76.3
MS.gene063950.t1 AT2G22540 51.471 68 33 0 9 76 2 69 2.16e-16 76.3
MS.gene063950.t1 AT2G45660 50.000 68 34 0 10 77 3 70 2.44e-16 73.9
MS.gene063950.t1 AT2G45660 50.000 68 34 0 10 77 3 70 6.20e-16 74.3
MS.gene063950.t1 AT2G42830 47.368 76 40 0 1 76 9 84 6.56e-16 74.7
MS.gene063950.t1 AT3G57230 47.059 68 36 0 9 76 2 69 6.88e-16 72.4
MS.gene063950.t1 AT3G58780 50.704 71 35 0 6 76 14 84 6.89e-16 74.7
MS.gene063950.t1 AT2G42830 47.368 76 40 0 1 76 9 84 7.10e-16 74.7
MS.gene063950.t1 AT3G61120 51.471 68 33 0 9 76 2 69 7.57e-16 74.7
MS.gene063950.t1 AT3G58780 50.704 71 35 0 6 76 20 90 7.88e-16 74.7
MS.gene063950.t1 AT5G62165 49.254 67 34 0 10 76 3 69 9.42e-16 71.2
MS.gene063950.t1 AT3G58780 50.704 71 35 0 6 76 14 84 1.14e-15 74.7
MS.gene063950.t1 AT1G22130 36.190 105 66 1 9 112 2 106 1.56e-15 75.1
MS.gene063950.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.83e-15 71.6
MS.gene063950.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.83e-15 71.6
MS.gene063950.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.83e-15 71.6
MS.gene063950.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.83e-15 71.6
MS.gene063950.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.83e-15 71.6
MS.gene063950.t1 AT1G77950 46.053 76 39 2 9 83 2 76 2.10e-15 73.6
MS.gene063950.t1 AT1G77950 46.053 76 39 2 9 83 2 76 2.10e-15 73.6
MS.gene063950.t1 AT1G77950 46.053 76 39 2 9 83 2 76 2.10e-15 73.6
MS.gene063950.t1 AT1G77950 46.053 76 39 2 9 83 2 76 2.10e-15 73.6
MS.gene063950.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.33e-15 71.6
MS.gene063950.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.33e-15 71.6
MS.gene063950.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.33e-15 71.6
MS.gene063950.t1 AT4G24540 35.075 134 75 4 9 132 2 133 2.37e-15 72.8
MS.gene063950.t1 AT3G57230 47.059 68 36 0 9 76 2 69 2.66e-15 73.2
MS.gene063950.t1 AT3G57230 47.059 68 36 0 9 76 2 69 2.66e-15 73.2
MS.gene063950.t1 AT1G77980 37.143 105 65 1 9 112 2 106 2.86e-15 74.3
MS.gene063950.t1 AT3G57390 48.529 68 35 0 9 76 2 69 3.38e-15 72.4
MS.gene063950.t1 AT2G22630 47.059 68 36 0 9 76 2 69 4.82e-15 72.0
MS.gene063950.t1 AT2G22630 47.059 68 36 0 9 76 2 69 4.82e-15 72.0
MS.gene063950.t1 AT5G51870 50.746 67 33 0 10 76 3 69 5.09e-15 70.9
MS.gene063950.t1 AT4G11880 48.611 72 36 1 10 80 3 74 5.17e-15 71.2
MS.gene063950.t1 AT4G11880 48.611 72 36 1 10 80 3 74 5.17e-15 71.2
MS.gene063950.t1 AT1G69120 40.659 91 51 1 9 99 2 89 5.30e-15 72.0
MS.gene063950.t1 AT1G17310 34.118 170 67 6 8 170 47 178 5.76e-15 71.6
MS.gene063950.t1 AT5G60910 49.296 71 33 1 9 79 2 69 6.12e-15 72.0
MS.gene063950.t1 AT3G57390 48.529 68 35 0 9 76 2 69 6.47e-15 72.4
MS.gene063950.t1 AT5G62165 49.254 67 34 0 10 76 3 69 7.80e-15 70.9
MS.gene063950.t1 AT5G62165 49.254 67 34 0 10 76 3 69 7.80e-15 70.9
MS.gene063950.t1 AT5G51870 50.746 67 33 0 10 76 3 69 8.03e-15 71.2
MS.gene063950.t1 AT5G62165 49.254 67 34 0 10 76 3 69 8.53e-15 71.2
MS.gene063950.t1 AT5G62165 49.254 67 34 0 10 76 3 69 8.53e-15 71.2
MS.gene063950.t1 AT5G62165 49.254 67 34 0 10 76 3 69 8.53e-15 71.2
MS.gene063950.t1 AT1G17310 34.118 170 67 6 8 170 58 189 8.62e-15 71.6
MS.gene063950.t1 AT1G69120 40.659 91 51 1 9 99 2 89 9.46e-15 72.0
MS.gene063950.t1 AT5G51870 47.222 72 38 0 5 76 21 92 9.50e-15 70.9
MS.gene063950.t1 AT5G13790 41.935 93 45 1 9 101 2 85 1.03e-14 72.0
MS.gene063950.t1 AT4G11880 48.611 72 36 1 10 80 3 74 1.04e-14 71.2
MS.gene063950.t1 AT4G11880 48.611 72 36 1 10 80 3 74 1.04e-14 71.2
MS.gene063950.t1 AT1G26310 47.826 69 35 1 9 76 2 70 1.07e-14 71.6
MS.gene063950.t1 AT5G13790 50.000 68 34 0 9 76 2 69 1.14e-14 71.6
MS.gene063950.t1 AT5G51860 50.746 67 33 0 10 76 3 69 1.49e-14 70.5
MS.gene063950.t1 AT5G51870 50.746 67 33 0 10 76 3 69 1.56e-14 70.5
MS.gene063950.t1 AT5G51860 50.746 67 33 0 10 76 3 69 1.58e-14 70.1
MS.gene063950.t1 AT5G51870 50.746 67 33 0 10 76 13 79 1.62e-14 70.9
MS.gene063950.t1 AT5G10140 47.826 69 35 1 9 76 2 70 2.10e-14 69.3
MS.gene063950.t1 AT4G37940 45.588 68 37 0 9 76 2 69 2.25e-14 70.1
MS.gene063950.t1 AT4G37940 45.588 68 37 0 9 76 2 69 2.42e-14 69.3
MS.gene063950.t1 AT1G28450 29.371 143 95 3 5 141 4 146 2.81e-14 69.3
MS.gene063950.t1 AT4G37940 45.588 68 37 0 9 76 2 69 2.83e-14 70.1
MS.gene063950.t1 AT5G10140 47.826 69 35 1 9 76 2 70 2.91e-14 68.9
MS.gene063950.t1 AT5G10140 47.826 69 35 1 9 76 2 70 3.26e-14 68.9
MS.gene063950.t1 AT5G10140 47.826 69 35 1 9 76 2 70 3.52e-14 69.3
MS.gene063950.t1 AT2G22540 50.000 68 29 1 9 76 2 64 5.89e-14 69.3
MS.gene063950.t1 AT2G14210 46.377 69 36 1 9 76 2 70 8.94e-14 68.9
MS.gene063950.t1 AT2G14210 46.377 69 36 1 9 76 2 70 1.09e-13 68.6
MS.gene063950.t1 AT3G54340 47.619 63 33 0 9 71 2 64 1.51e-13 68.2
MS.gene063950.t1 AT3G02310 47.826 69 35 1 9 76 2 70 1.53e-13 67.4
MS.gene063950.t1 AT5G20240 48.387 62 32 0 9 70 2 63 1.81e-13 66.2
MS.gene063950.t1 AT3G30260 43.478 69 38 1 9 76 2 70 1.93e-13 68.2
MS.gene063950.t1 AT5G23260 42.268 97 48 3 2 90 9 105 2.22e-13 68.2
MS.gene063950.t1 AT5G23260 42.268 97 48 3 2 90 9 105 2.35e-13 68.2
MS.gene063950.t1 AT5G15800 46.377 69 36 1 9 76 2 70 2.91e-13 67.8
MS.gene063950.t1 AT3G02310 47.826 69 35 1 9 76 2 70 3.24e-13 67.4
MS.gene063950.t1 AT5G23260 43.182 88 44 2 9 90 2 89 4.01e-13 67.0
MS.gene063950.t1 AT5G15800 46.377 69 36 1 9 76 2 70 4.16e-13 67.4
MS.gene063950.t1 AT5G23260 43.182 88 44 2 9 90 2 89 4.37e-13 67.0
MS.gene063950.t1 AT3G58780 51.667 60 29 0 6 65 14 73 4.93e-13 67.0
MS.gene063950.t1 AT5G20240 48.387 62 32 0 9 70 2 63 5.77e-13 66.2
MS.gene063950.t1 AT3G58780 51.667 60 29 0 6 65 14 73 6.17e-13 67.0
MS.gene063950.t1 AT1G24260 29.046 241 135 11 9 234 2 221 7.48e-13 66.2
MS.gene063950.t1 AT1G24260 46.377 69 36 1 9 76 2 70 9.82e-13 66.2
MS.gene063950.t1 AT1G24260 46.377 69 36 1 9 76 2 70 1.06e-12 65.9
MS.gene063950.t1 AT2G03710 51.786 56 27 0 9 64 2 57 1.45e-12 64.7
MS.gene063950.t1 AT1G47760 34.483 116 61 3 9 123 2 103 2.08e-12 63.9
MS.gene063950.t1 AT2G03710 51.786 56 27 0 9 64 2 57 3.55e-12 64.7
MS.gene063950.t1 AT2G03710 51.786 56 27 0 9 64 2 57 3.58e-12 64.7
MS.gene063950.t1 AT5G65050 43.478 69 38 1 9 76 2 70 8.12e-12 62.4
MS.gene063950.t1 AT5G65070 40.580 69 40 1 9 76 2 70 1.00e-11 61.2
MS.gene063950.t1 AT5G65050 43.478 69 38 1 9 76 2 70 1.12e-11 62.0
MS.gene063950.t1 AT5G65050 43.478 69 38 1 9 76 2 70 1.13e-11 62.0
MS.gene063950.t1 AT5G65050 43.478 69 38 1 9 76 2 70 1.24e-11 62.4
MS.gene063950.t1 AT1G71692 41.429 70 40 1 9 77 2 71 1.66e-11 62.0
MS.gene063950.t1 AT1G46408 36.134 119 67 4 10 119 5 123 2.15e-11 62.4
MS.gene063950.t1 AT5G65070 40.580 69 40 1 9 76 2 70 2.37e-11 61.6
MS.gene063950.t1 AT5G65060 43.478 69 38 1 9 76 2 70 2.37e-11 61.2
MS.gene063950.t1 AT5G65060 43.478 69 38 1 9 76 2 70 2.60e-11 61.2
MS.gene063950.t1 AT5G65060 43.478 69 38 1 9 76 2 70 2.98e-11 61.2
MS.gene063950.t1 AT5G65070 40.580 69 40 1 9 76 2 70 3.46e-11 61.2
MS.gene063950.t1 AT5G65070 40.580 69 40 1 9 76 2 70 3.90e-11 61.2

Find 55 sgRNAs with CRISPR-Local

Find 79 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGTTTGGTTTCAACAATA+TGG 0.236495 8.1:+60891654 MS.gene063950:CDS
ATTTGAGTTTGCGGAGGATT+TGG 0.289021 8.1:-60891589 None:intergenic
ATGGGCGGAGGAGGTGGATA+TGG 0.308161 8.1:+60891673 MS.gene063950:CDS
TGGTGGGCTGGTCCCGTTGA+TGG 0.316276 8.1:+60891403 MS.gene063950:CDS
AGGCGACCGAGGCTCAATTT+TGG 0.319875 8.1:+60891383 MS.gene063950:CDS
ATTGCATGGTACCATTGTTT+TGG 0.337688 8.1:-60891246 None:intergenic
ATGTTGCAATCTCATTTGTT+TGG 0.363366 8.1:+60891640 MS.gene063950:CDS
TGCTGATAGGCTTGTAATCC+AGG 0.383576 8.1:+60891495 MS.gene063950:CDS
TTGTTTGGTTTCAACAATAT+GGG 0.389830 8.1:+60891655 MS.gene063950:CDS
AACAATATGGGCGGAGGAGG+TGG 0.400658 8.1:+60891667 MS.gene063950:CDS
AGTGAGCTTTGCACTCTTAG+TGG 0.421280 8.1:+60891118 MS.gene063950:CDS
TCTTCTCCATGTCCAGTAGC+TGG 0.428165 8.1:-60891330 None:intergenic
GTCCCGTTGATGGGATGAAT+AGG 0.432754 8.1:+60891413 MS.gene063950:CDS
GCGGAGGATTTGGTTGATGA+TGG 0.439291 8.1:-60891579 None:intergenic
GGTGGGCTGGTCCCGTTGAT+GGG 0.452333 8.1:+60891404 MS.gene063950:CDS
TCCCGTTGATGGGATGAATA+GGG 0.453040 8.1:+60891414 MS.gene063950:CDS
TGGTTGCACATCATGCTGAT+AGG 0.453644 8.1:+60891482 MS.gene063950:CDS
CCTCGGTCGCCTTGCGCAAG+TGG 0.465805 8.1:-60891372 None:intergenic
CTCTATGACCGTATCAACAT+TGG 0.477809 8.1:-60891200 None:intergenic
AACAAATGAGATTGCAACAT+AGG 0.480998 8.1:-60891637 None:intergenic
GCCCTATTCATCCCATCAAC+GGG 0.481029 8.1:-60891415 None:intergenic
GGAGGTGGATATGGACCCTC+TGG 0.496673 8.1:+60891682 MS.gene063950:CDS
TTCAACAATATGGGCGGAGG+AGG 0.500330 8.1:+60891664 MS.gene063950:CDS
ATGATGGAGAGGCATGTTAG+AGG 0.501643 8.1:-60891563 None:intergenic
GCTGGAAACATTTGAGTTTG+CGG 0.508183 8.1:-60891598 None:intergenic
GACTCAGATCAACCAGCTAC+TGG 0.508380 8.1:+60891318 MS.gene063950:CDS
GGCCCTATTCATCCCATCAA+CGG 0.536262 8.1:-60891416 None:intergenic
TCTATGACCGTATCAACATT+GGG 0.539713 8.1:-60891199 None:intergenic
ACTAAGAGTGCAAAGCTCAC+TGG 0.541724 8.1:-60891116 None:intergenic
TGGCCAACCCAATGTTGATA+CGG 0.545005 8.1:+60891192 MS.gene063950:CDS
CCACTTGCGCAAGGCGACCG+AGG 0.551221 8.1:+60891372 MS.gene063950:CDS
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 8.1:+60891080 MS.gene063950:CDS
GATCAACCAGCTACTGGACA+TGG 0.554332 8.1:+60891324 MS.gene063950:CDS
ACAAATGAGATTGCAACATA+GGG 0.555620 8.1:-60891636 None:intergenic
ATTCAACCATGTCGAGTGGA+AGG 0.567884 8.1:+60890993 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 8.1:+60891079 MS.gene063950:CDS
GGTTTCAACAATATGGGCGG+AGG 0.576445 8.1:+60891661 MS.gene063950:CDS
AATGAAAATACCTTCTCCCC+AGG 0.587583 8.1:-60891169 None:intergenic
AGCCCACCAAAATTGAGCCT+CGG 0.589062 8.1:-60891389 None:intergenic
TGACCGTATCAACATTGGGT+TGG 0.600758 8.1:-60891195 None:intergenic
TGGTTTGAGTAGGAGCACCC+TGG 0.605264 8.1:-60891513 None:intergenic
AGAGCTGAACCACTTGCGCA+AGG 0.610527 8.1:+60891363 MS.gene063950:CDS
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 8.1:-60891093 None:intergenic
GGATTTGGTTGATGATGGAG+AGG 0.611456 8.1:-60891574 None:intergenic
TGTGATTCAACCATGTCGAG+TGG 0.620546 8.1:+60890989 None:intergenic
GCTGATAGGCTTGTAATCCA+GGG 0.636302 8.1:+60891496 MS.gene063950:CDS
TGGTACCATGCAATTCATTG+AGG 0.638950 8.1:+60891255 MS.gene063950:CDS
CGAGTCCCACCCCAAAACAA+TGG 0.639467 8.1:+60891235 MS.gene063950:CDS
GTGAGCCTCAATGAATTGCA+TGG 0.640763 8.1:-60891260 None:intergenic
GGAAACATTTGAGTTTGCGG+AGG 0.647148 8.1:-60891595 None:intergenic
TTTGGTTTCAACAATATGGG+CGG 0.653087 8.1:+60891658 MS.gene063950:CDS
TCGGATCAAAAGAATCCAGA+GGG 0.678771 8.1:-60891697 None:intergenic
CTCGGATCAAAAGAATCCAG+AGG 0.678961 8.1:-60891698 None:intergenic
GCTCACGCACATTAGCGCTA+CGG 0.691652 8.1:-60891282 None:intergenic
TCGAGTGGAAGGAAAAGCCG+AGG 0.691796 8.1:+60891004 MS.gene063950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTGAAAAATTCAAGTT+GGG - chr8.1:60891440-60891459 None:intergenic 20.0%
!!! TTTTTTTCATCTCAATCTTT+TGG - chr8.1:60891033-60891052 None:intergenic 20.0%
! ATTTCCAACAAAAAATGGAA+TGG - chr8.1:60891536-60891555 None:intergenic 25.0%
!! TTGTTTGGTTTCAACAATAT+GGG + chr8.1:60891655-60891674 MS.gene063950:CDS 25.0%
!! TTTGTTTGGTTTCAACAATA+TGG + chr8.1:60891654-60891673 MS.gene063950:CDS 25.0%
!!! AATTTTTCAAAAAGGCTTTG+GGG + chr8.1:60891446-60891465 MS.gene063950:CDS 25.0%
!!! ATTCCATTTTTTGTTGGAAA+TGG + chr8.1:60891535-60891554 MS.gene063950:CDS 25.0%
!!! CCAACTTGAATTTTTCAAAA+AGG + chr8.1:60891438-60891457 MS.gene063950:CDS 25.0%
!!! CCTTTTTGAAAAATTCAAGT+TGG - chr8.1:60891441-60891460 None:intergenic 25.0%
!!! GAATTTTTCAAAAAGGCTTT+GGG + chr8.1:60891445-60891464 MS.gene063950:CDS 25.0%
!!! TGAATTTTTCAAAAAGGCTT+TGG + chr8.1:60891444-60891463 MS.gene063950:CDS 25.0%
AAAAATGGAATGGTTTGAGT+AGG - chr8.1:60891526-60891545 None:intergenic 30.0%
AACAAATGAGATTGCAACAT+AGG - chr8.1:60891640-60891659 None:intergenic 30.0%
ACAAATGAGATTGCAACATA+GGG - chr8.1:60891639-60891658 None:intergenic 30.0%
ATGTTGCAATCTCATTTGTT+TGG + chr8.1:60891640-60891659 MS.gene063950:CDS 30.0%
GAACCATTTCCAACAAAAAA+TGG - chr8.1:60891541-60891560 None:intergenic 30.0%
!! ATTTTTCAAAAAGGCTTTGG+GGG + chr8.1:60891447-60891466 MS.gene063950:CDS 30.0%
!!! CAAACCATTCCATTTTTTGT+TGG + chr8.1:60891529-60891548 MS.gene063950:CDS 30.0%
TCTATGACCGTATCAACATT+GGG - chr8.1:60891202-60891221 None:intergenic 35.0%
! ATTGCATGGTACCATTGTTT+TGG - chr8.1:60891249-60891268 None:intergenic 35.0%
! TTGCATGGTACCATTGTTTT+GGG - chr8.1:60891248-60891267 None:intergenic 35.0%
! TTTGGTTTCAACAATATGGG+CGG + chr8.1:60891658-60891677 MS.gene063950:CDS 35.0%
AATGAAAATACCTTCTCCCC+AGG - chr8.1:60891172-60891191 None:intergenic 40.0%
CTCTATGACCGTATCAACAT+TGG - chr8.1:60891203-60891222 None:intergenic 40.0%
TGGTACCATGCAATTCATTG+AGG + chr8.1:60891255-60891274 MS.gene063950:CDS 40.0%
! ATTTGAGTTTGCGGAGGATT+TGG - chr8.1:60891592-60891611 None:intergenic 40.0%
! GCTGGAAACATTTGAGTTTG+CGG - chr8.1:60891601-60891620 None:intergenic 40.0%
!! GGGTTCTGAAAAAATTGTGC+TGG - chr8.1:60891619-60891638 None:intergenic 40.0%
!! TGCATGGTACCATTGTTTTG+GGG - chr8.1:60891247-60891266 None:intergenic 40.0%
!!! GGGGAGAAGGTATTTTCATT+TGG + chr8.1:60891172-60891191 MS.gene063950:CDS 40.0%
AGTGAGCTTTGCACTCTTAG+TGG + chr8.1:60891118-60891137 MS.gene063950:CDS 45.0%
CTTTCTTGAAGAGCCCACTA+CGG - chr8.1:60891096-60891115 None:intergenic 45.0%
GCTGATAGGCTTGTAATCCA+GGG + chr8.1:60891496-60891515 MS.gene063950:CDS 45.0%
GTGAGCCTCAATGAATTGCA+TGG - chr8.1:60891263-60891282 None:intergenic 45.0%
TGACCGTATCAACATTGGGT+TGG - chr8.1:60891198-60891217 None:intergenic 45.0%
TGCTGATAGGCTTGTAATCC+AGG + chr8.1:60891495-60891514 MS.gene063950:CDS 45.0%
TGGCCAACCCAATGTTGATA+CGG + chr8.1:60891192-60891211 MS.gene063950:CDS 45.0%
TGGTTGCACATCATGCTGAT+AGG + chr8.1:60891482-60891501 MS.gene063950:CDS 45.0%
TTTGGGGGAGACTAAGAAAC+TGG + chr8.1:60891462-60891481 MS.gene063950:CDS 45.0%
! ACTAAGAGTGCAAAGCTCAC+TGG - chr8.1:60891119-60891138 None:intergenic 45.0%
! ATGATGGAGAGGCATGTTAG+AGG - chr8.1:60891566-60891585 None:intergenic 45.0%
! GGAAACATTTGAGTTTGCGG+AGG - chr8.1:60891598-60891617 None:intergenic 45.0%
! TCCCGTTGATGGGATGAATA+GGG + chr8.1:60891414-60891433 MS.gene063950:CDS 45.0%
! TCTCAATCTTTTGGCGACCT+CGG - chr8.1:60891024-60891043 None:intergenic 45.0%
!! CTCTCGTTGTTTTCTCACCT+GGG + chr8.1:60891152-60891171 MS.gene063950:CDS 45.0%
!! GGATTTGGTTGATGATGGAG+AGG - chr8.1:60891577-60891596 None:intergenic 45.0%
!! TCTCGTTGTTTTCTCACCTG+GGG + chr8.1:60891153-60891172 MS.gene063950:CDS 45.0%
!!! ATGGTACCATTGTTTTGGGG+TGG - chr8.1:60891244-60891263 None:intergenic 45.0%
!!! TGGTACCATTGTTTTGGGGT+GGG - chr8.1:60891243-60891262 None:intergenic 45.0%
AGCCCACCAAAATTGAGCCT+CGG - chr8.1:60891392-60891411 None:intergenic 50.0%
GACTCAGATCAACCAGCTAC+TGG + chr8.1:60891318-60891337 MS.gene063950:CDS 50.0%
GATCAACCAGCTACTGGACA+TGG + chr8.1:60891324-60891343 MS.gene063950:CDS 50.0%
GCCCTATTCATCCCATCAAC+GGG - chr8.1:60891418-60891437 None:intergenic 50.0%
GGCCCTATTCATCCCATCAA+CGG - chr8.1:60891419-60891438 None:intergenic 50.0%
GGTTTCAACAATATGGGCGG+AGG + chr8.1:60891661-60891680 MS.gene063950:CDS 50.0%
TCTTCTCCATGTCCAGTAGC+TGG - chr8.1:60891333-60891352 None:intergenic 50.0%
TTCAACAATATGGGCGGAGG+AGG + chr8.1:60891664-60891683 MS.gene063950:CDS 50.0%
! GTCCCGTTGATGGGATGAAT+AGG + chr8.1:60891413-60891432 MS.gene063950:CDS 50.0%
! TGTTTTCTCACCTGGGGAGA+AGG + chr8.1:60891159-60891178 MS.gene063950:CDS 50.0%
!! GACCGAGGCTCAATTTTGGT+GGG + chr8.1:60891387-60891406 MS.gene063950:CDS 50.0%
!! GCGGAGGATTTGGTTGATGA+TGG - chr8.1:60891582-60891601 None:intergenic 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG + chr8.1:60891151-60891170 MS.gene063950:CDS 50.0%
AACAATATGGGCGGAGGAGG+TGG + chr8.1:60891667-60891686 MS.gene063950:CDS 55.0%
AGAGCTGAACCACTTGCGCA+AGG + chr8.1:60891363-60891382 MS.gene063950:CDS 55.0%
CGAGTCCCACCCCAAAACAA+TGG + chr8.1:60891235-60891254 MS.gene063950:CDS 55.0%
GCTCACGCACATTAGCGCTA+CGG - chr8.1:60891285-60891304 None:intergenic 55.0%
TCGAGTGGAAGGAAAAGCCG+AGG + chr8.1:60891004-60891023 MS.gene063950:CDS 55.0%
! AGGCGACCGAGGCTCAATTT+TGG + chr8.1:60891383-60891402 MS.gene063950:CDS 55.0%
! CGACCGAGGCTCAATTTTGG+TGG + chr8.1:60891386-60891405 MS.gene063950:CDS 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG + chr8.1:60891079-60891098 MS.gene063950:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG + chr8.1:60891080-60891099 MS.gene063950:CDS 55.0%
!! GAGGCTCAATTTTGGTGGGC+TGG + chr8.1:60891391-60891410 MS.gene063950:CDS 55.0%
!! TGGTTTGAGTAGGAGCACCC+TGG - chr8.1:60891516-60891535 None:intergenic 55.0%
ATGGGCGGAGGAGGTGGATA+TGG + chr8.1:60891673-60891692 MS.gene063950:CDS 60.0%
GGAGGTGGATATGGACCCTC+TGG + chr8.1:60891682-60891701 MS.gene063950:CDS 60.0%
!! GGTGGGCTGGTCCCGTTGAT+GGG + chr8.1:60891404-60891423 MS.gene063950:CDS 65.0%
!! TGGTGGGCTGGTCCCGTTGA+TGG + chr8.1:60891403-60891422 MS.gene063950:CDS 65.0%
CCACTTGCGCAAGGCGACCG+AGG + chr8.1:60891372-60891391 MS.gene063950:CDS 70.0%
CCTCGGTCGCCTTGCGCAAG+TGG - chr8.1:60891375-60891394 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 60891001 60891714 60891001 ID=MS.gene063950
chr8.1 mRNA 60891001 60891714 60891001 ID=MS.gene063950.t1;Parent=MS.gene063950
chr8.1 exon 60891001 60891714 60891001 ID=MS.gene063950.t1.exon1;Parent=MS.gene063950.t1
chr8.1 CDS 60891001 60891714 60891001 ID=cds.MS.gene063950.t1;Parent=MS.gene063950.t1
Gene Sequence

>MS.gene063950

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTTAGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGGGAGAAGGTATTTTCATTTGGCCAACCCAATGTTGATACGGTCATAGAGCGTTATCTCTCTCGAGTCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGCGCTAATGTGCGTGAGCTCAATACTCAGCTGACTCAGATCAACCAGCTACTGGACATGGAGAAGAAACGTGCTGAAGAGCTGAACCACTTGCGCAAGGCGACCGAGGCTCAATTTTGGTGGGCTGGTCCCGTTGATGGGATGAATAGGGCCCAACTTGAATTTTTCAAAAAGGCTTTGGGGGAGACTAAGAAACTGGTTGCACATCATGCTGATAGGCTTGTAATCCAGGGTGCTCCTACTCAAACCATTCCATTTTTTGTTGGAAATGGTTCATCCTCTAACATGCCTCTCCATCATCAACCAAATCCTCCGCAAACTCAAATGTTTCCAGCACAATTTTTTCAGAACCCTATGTTGCAATCTCATTTGTTTGGTTTCAACAATATGGGCGGAGGAGGTGGATATGGACCCTCTGGATTCTTTTGA
Protein sequence

>MS.gene063950.t1

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLSGADVALVVFSPGEKVFSFGQPNVDTVIERYLSRVPPQNNGTMQFIEAHRSANVRELNTQLTQINQLLDMEKKRAEELNHLRKATEAQFWWAGPVDGMNRAQLEFFKKALGETKKLVAHHADRLVIQGAPTQTIPFFVGNGSSSNMPLHHQPNPPQTQMFPAQFFQNPMLQSHLFGFNNMGGGGGYGPSGFF