Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064007.t1 | XP_024631053.1 | 97.6 | 127 | 3 | 0 | 18 | 144 | 232 | 358 | 3.70E-61 | 244.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064007.t1 | O81716 | 68.3 | 101 | 32 | 0 | 18 | 118 | 232 | 332 | 1.4e-37 | 157.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064007.t1 | G7I891 | 97.6 | 127 | 3 | 0 | 18 | 144 | 232 | 358 | 2.7e-61 | 244.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056174 | MS.gene064007 | 0.805085 | 1.58E-49 | -1.69E-46 |
| MS.gene059276 | MS.gene064007 | 0.80181 | 7.55E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064007.t1 | MTR_1g014190 | 97.638 | 127 | 3 | 0 | 18 | 144 | 232 | 358 | 4.32e-86 | 256 |
| MS.gene064007.t1 | MTR_1g014190 | 97.638 | 127 | 3 | 0 | 18 | 144 | 270 | 396 | 1.88e-85 | 255 |
| MS.gene064007.t1 | MTR_3g105880 | 72.868 | 129 | 33 | 1 | 18 | 144 | 232 | 360 | 5.86e-61 | 191 |
| MS.gene064007.t1 | MTR_4g007440 | 58.268 | 127 | 52 | 1 | 18 | 144 | 232 | 357 | 6.36e-46 | 153 |
| MS.gene064007.t1 | MTR_3g105880 | 76.667 | 60 | 14 | 0 | 18 | 77 | 232 | 291 | 1.03e-26 | 102 |
| MS.gene064007.t1 | MTR_4g123080 | 50.000 | 60 | 27 | 1 | 18 | 77 | 142 | 198 | 8.90e-12 | 61.2 |
| MS.gene064007.t1 | MTR_4g123080 | 50.000 | 60 | 27 | 1 | 18 | 77 | 255 | 311 | 1.59e-11 | 60.8 |
| MS.gene064007.t1 | MTR_4g123080 | 50.000 | 60 | 27 | 1 | 18 | 77 | 237 | 293 | 1.88e-11 | 60.8 |
| MS.gene064007.t1 | MTR_5g024340 | 30.147 | 136 | 81 | 5 | 2 | 131 | 236 | 363 | 4.62e-11 | 59.7 |
| MS.gene064007.t1 | MTR_3g491830 | 32.061 | 131 | 80 | 3 | 7 | 133 | 242 | 367 | 4.72e-11 | 59.7 |
| MS.gene064007.t1 | MTR_4g116420 | 28.283 | 99 | 66 | 2 | 18 | 116 | 258 | 351 | 7.39e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064007.t1 | AT4G31860 | 56.349 | 126 | 55 | 0 | 18 | 143 | 232 | 357 | 2.66e-48 | 159 |
| MS.gene064007.t1 | AT2G25070 | 68.317 | 101 | 32 | 0 | 18 | 118 | 232 | 332 | 1.73e-47 | 157 |
| MS.gene064007.t1 | AT2G25070 | 68.317 | 101 | 32 | 0 | 18 | 118 | 232 | 332 | 1.73e-47 | 157 |
| MS.gene064007.t1 | AT4G31860 | 63.333 | 60 | 22 | 0 | 18 | 77 | 232 | 291 | 3.46e-24 | 95.1 |
| MS.gene064007.t1 | AT4G31860 | 63.636 | 44 | 16 | 0 | 18 | 61 | 232 | 275 | 3.67e-15 | 70.5 |
Find 28 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACCAATTGTTGGCTTGAT+AGG | 0.213993 | 5.2:+37283722 | None:intergenic |
| CCGGTGTTTGGCGCAATCTT+TGG | 0.266160 | 5.2:-37282743 | MS.gene064007:CDS |
| TTCACAAACTTCAGAGAGTT+TGG | 0.281514 | 5.2:+37282777 | None:intergenic |
| TTATTGGAGCTACTTACTTC+AGG | 0.327624 | 5.2:-37285189 | MS.gene064007:intron |
| AGCGTATAAGCCTGTGTTAT+TGG | 0.376463 | 5.2:-37285205 | MS.gene064007:CDS |
| AAACTTACAATGTTTATGTC+TGG | 0.418978 | 5.2:+37284029 | None:intergenic |
| TGATAGCTTGTGATGGCATT+TGG | 0.432620 | 5.2:-37283832 | MS.gene064007:intron |
| GTACAAAATCTACCAATTGT+TGG | 0.434248 | 5.2:+37283713 | None:intergenic |
| TACAATGTTTATGTCTGGAT+TGG | 0.435988 | 5.2:+37284034 | None:intergenic |
| CTTCAACTGTTCTCCAATGT+TGG | 0.445319 | 5.2:+37282604 | None:intergenic |
| CAATCTTTGGCTGTTGGTGA+TGG | 0.452683 | 5.2:-37282730 | MS.gene064007:CDS |
| AATGTTTATGTCTGGATTGG+CGG | 0.464448 | 5.2:+37284037 | None:intergenic |
| TTGCCTATCAAGCCAACAAT+TGG | 0.471715 | 5.2:-37283725 | MS.gene064007:CDS |
| TGTACGTCAAGAACTTCTCT+TGG | 0.476519 | 5.2:-37283695 | MS.gene064007:intron |
| AAGAGTGCAAGACCGGTGTT+TGG | 0.499195 | 5.2:-37282755 | MS.gene064007:CDS |
| TGATAACATGACAATGATCT+TGG | 0.507507 | 5.2:-37282704 | MS.gene064007:CDS |
| TTGGCGCAATCTTTGGCTGT+TGG | 0.510283 | 5.2:-37282736 | MS.gene064007:CDS |
| GCCGGTGCACTAGTCTGCAC+TGG | 0.511375 | 5.2:+37282667 | None:intergenic |
| ATACGCTACACCTGCAACCA+TGG | 0.511993 | 5.2:+37285221 | None:intergenic |
| TTTGTGAAAGAGTGCAAGAC+CGG | 0.549022 | 5.2:-37282762 | MS.gene064007:CDS |
| AGATGCATCTGAACCAACAT+TGG | 0.550287 | 5.2:-37282617 | MS.gene064007:CDS |
| TAAACTCATCTTCGTCATGA+AGG | 0.558190 | 5.2:+37283858 | None:intergenic |
| GAAGATGATTGTTCTTGAGC+CGG | 0.573200 | 5.2:+37282649 | None:intergenic |
| ACCAGTGCAGACTAGTGCAC+CGG | 0.589984 | 5.2:-37282668 | MS.gene064007:CDS |
| CCAAAGATTGCGCCAAACAC+CGG | 0.596898 | 5.2:+37282743 | None:intergenic |
| TAATAATTCTGCAGGTGACG+TGG | 0.602024 | 5.2:-37284105 | MS.gene064007:intron |
| GTAAGTAGCTCCAATAACAC+AGG | 0.642874 | 5.2:+37285195 | None:intergenic |
| TTTATAGTGATAGCTTGTGA+TGG | 0.644189 | 5.2:-37283839 | MS.gene064007:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTTAATAATGACAATT+TGG | + | chr5.2:37284669-37284688 | None:intergenic | 10.0% |
| !! | AAATGACATTTAATTAAAAT+GGG | + | chr5.2:37284049-37284068 | None:intergenic | 10.0% |
| !! | AATAAAATAAAATAATAGGA+AGG | + | chr5.2:37283531-37283550 | None:intergenic | 10.0% |
| !! | AATTAACAAAAACAAATTAA+AGG | + | chr5.2:37283039-37283058 | None:intergenic | 10.0% |
| !! | ATTAACAAAAACAAATTAAA+GGG | + | chr5.2:37283038-37283057 | None:intergenic | 10.0% |
| !! | AAAATATAGAAATCTACTTT+CGG | + | chr5.2:37282830-37282849 | None:intergenic | 15.0% |
| !! | AATGACATTTAATTAAAATG+GGG | + | chr5.2:37284048-37284067 | None:intergenic | 15.0% |
| !! | ATATTGTCTATTGATAAATA+GGG | + | chr5.2:37283843-37283862 | None:intergenic | 15.0% |
| !! | GAAATGACATTTAATTAAAA+TGG | + | chr5.2:37284050-37284069 | None:intergenic | 15.0% |
| !! | TTAAAAAAATCAAATTGTGA+AGG | - | chr5.2:37284781-37284800 | MS.gene064007:intron | 15.0% |
| !!! | AATTTCTTTGAAAATATTGA+TGG | - | chr5.2:37283206-37283225 | MS.gene064007:intron | 15.0% |
| !!! | ATATTTTCAAAGAAATTAGA+CGG | + | chr5.2:37283203-37283222 | None:intergenic | 15.0% |
| !!! | TGTTTTTGGAATTATATTAT+AGG | - | chr5.2:37283940-37283959 | MS.gene064007:intron | 15.0% |
| !!! | TTATTTTGTATGCTTTATTT+TGG | - | chr5.2:37283546-37283565 | MS.gene064007:intron | 15.0% |
| !!! | TTGTTTTTGTTAATTTTGTT+GGG | - | chr5.2:37283044-37283063 | MS.gene064007:intron | 15.0% |
| !!! | TTTGTTTTTGTTAATTTTGT+TGG | - | chr5.2:37283043-37283062 | MS.gene064007:intron | 15.0% |
| !! | AAATTATAGTCAAGAAGAAA+CGG | + | chr5.2:37283646-37283665 | None:intergenic | 20.0% |
| !! | ACTACATTGAAATAATTACT+TGG | + | chr5.2:37284969-37284988 | None:intergenic | 20.0% |
| !! | AGGTTAACAAATAAATAGTT+CGG | + | chr5.2:37284634-37284653 | None:intergenic | 20.0% |
| !! | ATAATAGAATTTCAACATCA+TGG | - | chr5.2:37283335-37283354 | MS.gene064007:intron | 20.0% |
| !! | CATATTGTCTATTGATAAAT+AGG | + | chr5.2:37283844-37283863 | None:intergenic | 20.0% |
| !! | CTATTATTATAAAGTCATAG+AGG | + | chr5.2:37282857-37282876 | None:intergenic | 20.0% |
| !! | CTATTTATCAATAGACAATA+TGG | - | chr5.2:37283842-37283861 | MS.gene064007:CDS | 20.0% |
| !! | CTTGTATATGAAATGTTATT+TGG | - | chr5.2:37284252-37284271 | MS.gene064007:intron | 20.0% |
| !! | GTAATTATTTCAATGTAGTT+TGG | - | chr5.2:37284970-37284989 | MS.gene064007:intron | 20.0% |
| !! | TAGTTACTATTAATAAAGCA+AGG | + | chr5.2:37283288-37283307 | None:intergenic | 20.0% |
| !! | TTATGCTTAGAAAAAAAACT+TGG | + | chr5.2:37284942-37284961 | None:intergenic | 20.0% |
| !! | TTATTTGGACTTACATAATT+TGG | - | chr5.2:37284267-37284286 | MS.gene064007:intron | 20.0% |
| !!! | AATTCTTTTTCTTACATTTC+AGG | - | chr5.2:37284075-37284094 | MS.gene064007:CDS | 20.0% |
| !!! | ATATGTTTTAATAATTCTGC+AGG | - | chr5.2:37283712-37283731 | MS.gene064007:CDS | 20.0% |
| !!! | ATTCTTTTTCTTACATTTCA+GGG | - | chr5.2:37284076-37284095 | MS.gene064007:CDS | 20.0% |
| !!! | CAATTTGATTTTTTTAAGTG+TGG | + | chr5.2:37284778-37284797 | None:intergenic | 20.0% |
| !!! | TTTTATTTACTTGCTTTGTA+GGG | - | chr5.2:37282886-37282905 | MS.gene064007:intron | 20.0% |
| ! | AAACTTACAATGTTTATGTC+TGG | + | chr5.2:37283799-37283818 | None:intergenic | 25.0% |
| ! | AAATTGAACAAAACTGTTGA+TGG | - | chr5.2:37284477-37284496 | MS.gene064007:intron | 25.0% |
| ! | ATAGCTTAATACACAAGTAA+TGG | + | chr5.2:37283311-37283330 | None:intergenic | 25.0% |
| ! | GGAAACAATATAAACCATAT+AGG | + | chr5.2:37283687-37283706 | None:intergenic | 25.0% |
| ! | TGTAAAACAACAACATTGAA+AGG | + | chr5.2:37282728-37282747 | None:intergenic | 25.0% |
| ! | TGTAATAGTATTTGTAGTTC+TGG | + | chr5.2:37284567-37284586 | None:intergenic | 25.0% |
| ! | TTAATTAAAATGGGGAATTG+TGG | + | chr5.2:37284040-37284059 | None:intergenic | 25.0% |
| !! | AGTAATGATTCTTTTCAGTT+CGG | + | chr5.2:37284442-37284461 | None:intergenic | 25.0% |
| !! | TCTACGTTTGATTCAATTTT+AGG | - | chr5.2:37282673-37282692 | MS.gene064007:CDS | 25.0% |
| !! | TTAAATTTTGCTCAAATTGC+TGG | - | chr5.2:37284680-37284699 | MS.gene064007:intron | 25.0% |
| !!! | CTTTTATTTACTTGCTTTGT+AGG | - | chr5.2:37282885-37282904 | MS.gene064007:intron | 25.0% |
| !!! | TAGTTTGTTTCTTCTTACTA+AGG | - | chr5.2:37283093-37283112 | MS.gene064007:intron | 25.0% |
| !!! | TTTTGTATGCTTTATTTTGG+AGG | - | chr5.2:37283549-37283568 | MS.gene064007:intron | 25.0% |
| !!! | TTTTTAAGTGTGGTTTGATT+CGG | + | chr5.2:37284768-37284787 | None:intergenic | 25.0% |
| ATACTTGTATGCATGTTGTT+TGG | - | chr5.2:37283583-37283602 | MS.gene064007:intron | 30.0% | |
| CAATAATTGCTTAGCTACAA+GGG | - | chr5.2:37283125-37283144 | MS.gene064007:intron | 30.0% | |
| GTACAAAATCTACCAATTGT+TGG | + | chr5.2:37284115-37284134 | None:intergenic | 30.0% | |
| GTCATTAGATGATAGAATGA+CGG | - | chr5.2:37283172-37283191 | MS.gene064007:intron | 30.0% | |
| GTTCGGTTTAACATTCAATT+TGG | - | chr5.2:37284887-37284906 | MS.gene064007:intron | 30.0% | |
| TACAATGTTTATGTCTGGAT+TGG | + | chr5.2:37283794-37283813 | None:intergenic | 30.0% | |
| TATTGTAGCATGCGTATAAA+AGG | - | chr5.2:37283503-37283522 | MS.gene064007:intron | 30.0% | |
| TGAATAACAAGGACTGTTTA+TGG | - | chr5.2:37284393-37284412 | MS.gene064007:intron | 30.0% | |
| TGATAACATGACAATGATCT+TGG | - | chr5.2:37285121-37285140 | MS.gene064007:intron | 30.0% | |
| TTCATATACAAGACAGTACT+AGG | + | chr5.2:37284244-37284263 | None:intergenic | 30.0% | |
| TTGCACAAACTAGATATGAT+AGG | + | chr5.2:37282796-37282815 | None:intergenic | 30.0% | |
| TTTCAACATCATGGTCTAAT+AGG | - | chr5.2:37283344-37283363 | MS.gene064007:intron | 30.0% | |
| TTTGAATTCTGTATGCTTGT+CGG | - | chr5.2:37283456-37283475 | MS.gene064007:intron | 30.0% | |
| ! | ATTCAATTTTAGGCCACTAA+AGG | - | chr5.2:37282683-37282702 | MS.gene064007:CDS | 30.0% |
| ! | GTTCACAGTTCTTTTCTTTT+TGG | - | chr5.2:37284860-37284879 | MS.gene064007:intron | 30.0% |
| ! | TTTATAGTGATAGCTTGTGA+TGG | - | chr5.2:37283986-37284005 | MS.gene064007:intron | 30.0% |
| !! | GTTGTGTTACTTGAATAACA+AGG | - | chr5.2:37284382-37284401 | MS.gene064007:intron | 30.0% |
| !!! | ATACACTTTTTTCATCTCAC+AGG | - | chr5.2:37285022-37285041 | MS.gene064007:intron | 30.0% |
| !!! | CTGAATGAGAGTTTTGTTTT+TGG | - | chr5.2:37283926-37283945 | MS.gene064007:intron | 30.0% |
| !!! | GTTGTTGTTTTACATGAAGA+TGG | - | chr5.2:37282734-37282753 | MS.gene064007:CDS | 30.0% |
| AACAAGGACTGTTTATGGTT+TGG | - | chr5.2:37284398-37284417 | MS.gene064007:intron | 35.0% | |
| ACATTAACCATGACCTTTAG+TGG | + | chr5.2:37282699-37282718 | None:intergenic | 35.0% | |
| CAATTTGGTACACAAAGCAA+AGG | + | chr5.2:37284654-37284673 | None:intergenic | 35.0% | |
| CCAATAATTGCTTAGCTACA+AGG | - | chr5.2:37283124-37283143 | MS.gene064007:intron | 35.0% | |
| CCTTGTAGCTAAGCAATTAT+TGG | + | chr5.2:37283127-37283146 | None:intergenic | 35.0% | |
| TAAACTCATCTTCGTCATGA+AGG | + | chr5.2:37283970-37283989 | None:intergenic | 35.0% | |
| TAGATGATAGAATGACGGTA+TGG | - | chr5.2:37283177-37283196 | MS.gene064007:intron | 35.0% | |
| TAGGATGATGAAAAGTTACC+AGG | - | chr5.2:37282957-37282976 | MS.gene064007:intron | 35.0% | |
| TTATTGGAGCTACTTACTTC+AGG | - | chr5.2:37282636-37282655 | MS.gene064007:CDS | 35.0% | |
| TTCACAAACTTCAGAGAGTT+TGG | + | chr5.2:37285051-37285070 | None:intergenic | 35.0% | |
| ! | AATGTTTATGTCTGGATTGG+CGG | + | chr5.2:37283791-37283810 | None:intergenic | 35.0% |
| ! | TGATTCTTTTCAGTTCGGTT+TGG | + | chr5.2:37284437-37284456 | None:intergenic | 35.0% |
| ! | TTTTCATCATCCTACCTCAA+AGG | + | chr5.2:37282951-37282970 | None:intergenic | 35.0% |
| !! | CAGTTCTTTTCTTTTTGGTG+TGG | - | chr5.2:37284865-37284884 | MS.gene064007:intron | 35.0% |
| !! | CTTTTCTTTTTGGTGTGGTT+CGG | - | chr5.2:37284870-37284889 | MS.gene064007:intron | 35.0% |
| !! | TGTTAATTTTGTTGGGTTGC+CGG | - | chr5.2:37283051-37283070 | MS.gene064007:intron | 35.0% |
| ACACAGACAGAACTGATGAT+TGG | + | chr5.2:37284533-37284552 | None:intergenic | 40.0% | |
| AGATGCATCTGAACCAACAT+TGG | - | chr5.2:37285208-37285227 | MS.gene064007:CDS | 40.0% | |
| AGCAAAAACAGATCCTGTAC+CGG | + | chr5.2:37283073-37283092 | None:intergenic | 40.0% | |
| AGCGTATAAGCCTGTGTTAT+TGG | - | chr5.2:37282620-37282639 | MS.gene064007:CDS | 40.0% | |
| CAGAACCAGAACTGGTATAA+AGG | - | chr5.2:37284505-37284524 | MS.gene064007:intron | 40.0% | |
| GAAGATGATTGTTCTTGAGC+CGG | + | chr5.2:37285179-37285198 | None:intergenic | 40.0% | |
| GCGAAGAAATTGCACCTATA+TGG | - | chr5.2:37283670-37283689 | MS.gene064007:intron | 40.0% | |
| GTAAGTAGCTCCAATAACAC+AGG | + | chr5.2:37282633-37282652 | None:intergenic | 40.0% | |
| TAATAATTCTGCAGGTGACG+TGG | - | chr5.2:37283720-37283739 | MS.gene064007:CDS | 40.0% | |
| TCTGCGCATTAACTGATGTT+AGG | - | chr5.2:37284727-37284746 | MS.gene064007:intron | 40.0% | |
| TGGAACCTTTATACCAGTTC+TGG | + | chr5.2:37284513-37284532 | None:intergenic | 40.0% | |
| TGTACGTCAAGAACTTCTCT+TGG | - | chr5.2:37284130-37284149 | MS.gene064007:intron | 40.0% | |
| TTGCCTATCAAGCCAACAAT+TGG | - | chr5.2:37284100-37284119 | MS.gene064007:intron | 40.0% | |
| ! | GAACAGCTCTTTTTCCTTTG+AGG | - | chr5.2:37282934-37282953 | MS.gene064007:intron | 40.0% |
| ! | TAGGGTAATCTGACTTGCAA+TGG | + | chr5.2:37283825-37283844 | None:intergenic | 40.0% |
| ! | TGATAGCTTGTGATGGCATT+TGG | - | chr5.2:37283993-37284012 | MS.gene064007:intron | 40.0% |
| ! | TTTGTGAAAGAGTGCAAGAC+CGG | - | chr5.2:37285063-37285082 | MS.gene064007:intron | 40.0% |
| ! | TTTTAGGCCACTAAAGGTCA+TGG | - | chr5.2:37282689-37282708 | MS.gene064007:CDS | 40.0% |
| !! | CTACCAATTGTTGGCTTGAT+AGG | + | chr5.2:37284106-37284125 | None:intergenic | 40.0% |
| !!! | AGCTCTTTTTCCTTTGAGGT+AGG | - | chr5.2:37282938-37282957 | MS.gene064007:intron | 40.0% |
| !!! | TGCTTTATTTTGGAGGCAAG+AGG | - | chr5.2:37283556-37283575 | MS.gene064007:intron | 40.0% |
| !!! | TTTATTTTGGAGGCAAGAGG+AGG | - | chr5.2:37283559-37283578 | MS.gene064007:intron | 40.0% |
| GCTTGTGATGGCATTTGGTA+TGG | - | chr5.2:37283998-37284017 | MS.gene064007:intron | 45.0% | |
| GTTCATGAACTGAACTGAGC+TGG | + | chr5.2:37284839-37284858 | None:intergenic | 45.0% | |
| TGATTCTTACGCACTCTTCC+TGG | + | chr5.2:37282978-37282997 | None:intergenic | 45.0% | |
| TGCTGGCCATCACAAGTTAA+AGG | - | chr5.2:37284697-37284716 | MS.gene064007:intron | 45.0% | |
| TGGAGCTACTTACTTCAGGT+TGG | - | chr5.2:37282640-37282659 | MS.gene064007:CDS | 45.0% | |
| ! | CAATCTTTGGCTGTTGGTGA+TGG | - | chr5.2:37285095-37285114 | MS.gene064007:intron | 45.0% |
| ! | TGGTTTGTCAGAACCAGAAC+TGG | - | chr5.2:37284497-37284516 | MS.gene064007:intron | 45.0% |
| !! | CGAGTGCCTTTAACTTGTGA+TGG | + | chr5.2:37284706-37284725 | None:intergenic | 45.0% |
| !! | GTGTGGTTTGATTCGGTCTT+TGG | + | chr5.2:37284761-37284780 | None:intergenic | 45.0% |
| !! | AATTATTAAAACATATTAAA+TGG | + | chr5.2:37283708-37283727 | None:intergenic | 5.0% |
| !! | ACAAAATAAAATAAAATAAT+AGG | + | chr5.2:37283535-37283554 | None:intergenic | 5.0% |
| CCAAAGATTGCGCCAAACAC+CGG | + | chr5.2:37285085-37285104 | None:intergenic | 50.0% | |
| TTGGCGCAATCTTTGGCTGT+TGG | - | chr5.2:37285089-37285108 | MS.gene064007:intron | 50.0% | |
| ! | AAGAGTGCAAGACCGGTGTT+TGG | - | chr5.2:37285070-37285089 | MS.gene064007:intron | 50.0% |
| !! | TTTTGTTGGGTTGCCGGTAC+AGG | - | chr5.2:37283057-37283076 | MS.gene064007:intron | 50.0% |
| ACCAGTGCAGACTAGTGCAC+CGG | - | chr5.2:37285157-37285176 | MS.gene064007:intron | 55.0% | |
| CCGGTGTTTGGCGCAATCTT+TGG | - | chr5.2:37285082-37285101 | MS.gene064007:intron | 55.0% | |
| ! | GCCGGTGCACTAGTCTGCAC+TGG | + | chr5.2:37285161-37285180 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 37282606 | 37285241 | 37282606 | ID=MS.gene064007 |
| chr5.2 | mRNA | 37282606 | 37285241 | 37282606 | ID=MS.gene064007.t1;Parent=MS.gene064007 |
| chr5.2 | exon | 37285190 | 37285241 | 37285190 | ID=MS.gene064007.t1.exon1;Parent=MS.gene064007.t1 |
| chr5.2 | CDS | 37285190 | 37285241 | 37285190 | ID=cds.MS.gene064007.t1;Parent=MS.gene064007.t1 |
| chr5.2 | exon | 37284037 | 37284113 | 37284037 | ID=MS.gene064007.t1.exon2;Parent=MS.gene064007.t1 |
| chr5.2 | CDS | 37284037 | 37284113 | 37284037 | ID=cds.MS.gene064007.t1;Parent=MS.gene064007.t1 |
| chr5.2 | exon | 37283833 | 37283885 | 37283833 | ID=MS.gene064007.t1.exon3;Parent=MS.gene064007.t1 |
| chr5.2 | CDS | 37283833 | 37283885 | 37283833 | ID=cds.MS.gene064007.t1;Parent=MS.gene064007.t1 |
| chr5.2 | exon | 37283696 | 37283750 | 37283696 | ID=MS.gene064007.t1.exon4;Parent=MS.gene064007.t1 |
| chr5.2 | CDS | 37283696 | 37283750 | 37283696 | ID=cds.MS.gene064007.t1;Parent=MS.gene064007.t1 |
| chr5.2 | exon | 37282606 | 37282803 | 37282606 | ID=MS.gene064007.t1.exon5;Parent=MS.gene064007.t1 |
| chr5.2 | CDS | 37282606 | 37282803 | 37282606 | ID=cds.MS.gene064007.t1;Parent=MS.gene064007.t1 |
| Gene Sequence |
| Protein sequence |
